Query 042632
Match_columns 659
No_of_seqs 710 out of 4860
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.6E-69 1.2E-73 611.0 46.9 580 1-585 96-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.3E-61 4.6E-66 549.0 41.6 560 1-576 73-721 (768)
3 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-56 3.9E-61 513.8 38.3 488 4-576 23-564 (844)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.4E-55 4.7E-60 495.6 43.8 540 5-577 25-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 6.6E-56 2.3E-60 491.6 40.2 493 5-576 33-564 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-54 6.5E-59 479.9 33.2 487 5-577 32-563 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-53 2E-57 474.3 44.3 529 1-554 45-627 (680)
8 3t6q_A CD180 antigen; protein- 100.0 3.1E-53 1.1E-57 470.2 36.8 491 1-554 53-565 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 6.2E-52 2.1E-56 459.7 35.5 468 1-555 52-564 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 3.4E-51 1.2E-55 468.6 33.1 516 1-584 44-591 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 8.9E-50 3E-54 439.4 34.8 482 8-577 10-536 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.3E-48 2.2E-52 422.5 33.6 483 5-576 5-514 (549)
13 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-48 1.2E-52 421.2 25.5 453 8-553 3-485 (520)
14 2z63_A TOLL-like receptor 4, v 100.0 5E-47 1.7E-51 417.5 30.3 469 5-558 28-540 (570)
15 4eco_A Uncharacterized protein 100.0 1.3E-48 4.3E-53 432.6 17.1 472 29-573 81-601 (636)
16 4eco_A Uncharacterized protein 100.0 8E-48 2.8E-52 426.2 18.9 468 5-553 81-604 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-46 4E-51 409.3 26.3 452 32-576 3-485 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 3E-45 1E-49 409.0 36.9 491 6-576 53-584 (635)
19 4ecn_A Leucine-rich repeat pro 100.0 3.1E-45 1.1E-49 411.4 29.7 473 29-573 323-865 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-45 7.5E-50 402.3 27.0 462 5-554 26-515 (549)
21 4ecn_A Leucine-rich repeat pro 100.0 2.4E-45 8.3E-50 412.3 26.8 369 147-573 424-841 (876)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-44 4.2E-49 396.6 22.9 457 5-555 31-516 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-43 1.1E-47 385.2 24.1 457 27-576 29-514 (562)
24 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-41 1.2E-45 376.1 35.2 468 1-553 72-584 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 4.7E-41 1.6E-45 359.0 31.2 353 171-576 30-412 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 4.6E-42 1.6E-46 363.4 22.0 415 5-573 11-430 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1.2E-40 4E-45 355.9 29.0 385 101-556 13-415 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-40 4.6E-45 352.2 22.1 404 22-573 5-410 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 3.6E-38 1.2E-42 338.5 24.6 345 149-574 14-358 (477)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.2E-37 1.8E-41 325.0 28.5 361 20-555 33-393 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-37 1.5E-41 325.6 27.5 356 2-532 39-394 (457)
32 1o6v_A Internalin A; bacterial 100.0 2.8E-36 9.5E-41 322.2 32.1 346 97-551 45-390 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.9E-36 9.9E-41 322.1 31.8 346 146-575 46-391 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 1E-36 3.5E-41 327.2 27.8 322 198-576 14-337 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 8.2E-36 2.8E-40 311.3 25.6 335 145-576 44-378 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 9E-35 3.1E-39 303.4 27.0 312 194-575 44-355 (390)
37 3oja_B Anopheles plasmodium-re 100.0 6.7E-35 2.3E-39 321.0 25.8 334 146-576 51-384 (597)
38 4fmz_A Internalin; leucine ric 100.0 1.2E-33 4E-38 290.3 29.4 304 170-549 43-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 4.9E-35 1.7E-39 294.9 18.6 259 244-581 50-312 (313)
40 3oja_B Anopheles plasmodium-re 100.0 5.5E-34 1.9E-38 313.7 27.2 312 194-575 50-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 7E-33 2.4E-37 284.5 30.3 282 170-525 65-346 (347)
42 2ft3_A Biglycan; proteoglycan, 100.0 5.8E-32 2E-36 275.5 26.1 287 196-547 34-331 (332)
43 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-32 2.5E-36 274.7 26.0 288 172-523 34-331 (332)
44 1z7x_W Ribonuclease inhibitor; 100.0 4.1E-35 1.4E-39 313.6 0.3 357 146-550 3-412 (461)
45 1xku_A Decorin; proteoglycan, 100.0 1.5E-31 5.3E-36 272.2 26.4 289 172-547 32-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-34 4.3E-39 309.8 3.5 385 98-549 3-440 (461)
47 1xku_A Decorin; proteoglycan, 100.0 2.5E-31 8.5E-36 270.7 27.7 249 146-406 31-282 (330)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.7E-37 277.8 16.7 252 220-550 50-306 (313)
49 3ogk_B Coronatine-insensitive 100.0 1.3E-31 4.5E-36 295.9 3.7 343 45-396 64-445 (592)
50 2z66_A Variable lymphocyte rec 100.0 9.2E-30 3.2E-34 256.2 14.9 252 223-553 10-265 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 2.8E-29 9.5E-34 258.0 17.2 202 195-400 31-235 (353)
52 2z80_A TOLL-like receptor 2, v 100.0 3.1E-29 1.1E-33 257.6 17.1 280 218-554 29-319 (353)
53 2z66_A Variable lymphocyte rec 100.0 1.2E-28 4E-33 248.1 17.8 276 199-555 11-293 (306)
54 3zyj_A Leucine-rich repeat-con 100.0 1.1E-27 3.8E-32 253.7 23.5 251 245-553 44-296 (440)
55 3ogk_B Coronatine-insensitive 100.0 1.5E-30 5.1E-35 287.4 1.5 410 89-551 64-528 (592)
56 3zyi_A Leucine-rich repeat-con 100.0 2.4E-27 8.2E-32 252.0 25.7 249 223-552 57-306 (452)
57 3zyj_A Leucine-rich repeat-con 100.0 2.2E-27 7.4E-32 251.4 25.3 248 221-526 44-293 (440)
58 3zyi_A Leucine-rich repeat-con 100.0 1.4E-27 4.8E-32 253.8 23.8 230 292-576 75-307 (452)
59 1ozn_A Reticulon 4 receptor; N 100.0 3.6E-28 1.2E-32 241.8 17.7 250 247-575 14-264 (285)
60 3o53_A Protein LRIM1, AGAP0063 100.0 2.5E-29 8.6E-34 253.9 8.0 267 197-554 12-281 (317)
61 4fcg_A Uncharacterized protein 100.0 9.9E-28 3.4E-32 242.9 19.0 236 243-550 80-315 (328)
62 1ozn_A Reticulon 4 receptor; N 100.0 3.5E-27 1.2E-31 234.7 21.2 127 198-328 14-141 (285)
63 4fcg_A Uncharacterized protein 99.9 3E-27 1E-31 239.4 19.7 236 218-525 79-314 (328)
64 2p1m_B Transport inhibitor res 99.9 1.4E-29 4.8E-34 279.8 2.6 448 9-550 47-545 (594)
65 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-26 1.5E-30 248.2 27.8 268 171-535 40-307 (622)
66 3g06_A SSPH2 (leucine-rich rep 99.9 4.4E-26 1.5E-30 248.1 26.6 263 195-554 40-302 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 4.1E-28 1.4E-32 245.0 6.9 268 172-530 11-281 (317)
68 1wwl_A Monocyte differentiatio 99.9 1.6E-28 5.5E-33 247.4 3.7 249 243-550 42-310 (312)
69 3oja_A Leucine-rich immune mol 99.9 2.2E-27 7.6E-32 253.4 12.4 234 245-544 35-270 (487)
70 2p1m_B Transport inhibitor res 99.9 4.3E-29 1.5E-33 275.9 -1.4 407 91-550 59-520 (594)
71 3oja_A Leucine-rich immune mol 99.9 1.9E-27 6.5E-32 254.0 9.8 246 266-576 32-286 (487)
72 1wwl_A Monocyte differentiatio 99.9 2.9E-27 1E-31 238.2 6.8 244 147-401 44-310 (312)
73 2z62_A TOLL-like receptor 4, v 99.9 9.5E-25 3.3E-29 215.9 22.0 209 293-555 29-243 (276)
74 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5.2E-29 215.3 19.9 203 288-550 6-209 (290)
75 2o6q_A Variable lymphocyte rec 99.9 3.9E-24 1.3E-28 210.6 22.0 205 293-553 17-222 (270)
76 2o6q_A Variable lymphocyte rec 99.9 1.8E-23 6E-28 205.9 23.3 203 318-575 18-221 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.7E-28 208.4 20.9 223 152-403 13-240 (276)
78 1p9a_G Platelet glycoprotein I 99.9 6E-23 2E-27 203.8 20.3 202 266-526 8-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.2E-28 206.5 15.4 202 291-555 40-241 (272)
80 3goz_A Leucine-rich repeat-con 99.9 4.8E-24 1.6E-28 219.5 8.0 259 225-551 3-299 (362)
81 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.2E-27 202.1 15.7 208 192-411 38-246 (272)
82 3m19_A Variable lymphocyte rec 99.9 5.3E-22 1.8E-26 193.0 20.1 212 317-584 15-232 (251)
83 2ca6_A RAN GTPase-activating p 99.9 2.4E-24 8.3E-29 224.0 0.8 239 238-552 26-319 (386)
84 4glp_A Monocyte differentiatio 99.9 9.8E-23 3.3E-27 204.9 12.3 204 292-550 91-308 (310)
85 3goz_A Leucine-rich repeat-con 99.9 9.1E-23 3.1E-27 209.9 12.2 261 9-307 2-299 (362)
86 3m19_A Variable lymphocyte rec 99.9 1.1E-21 3.9E-26 190.6 17.9 180 339-574 14-194 (251)
87 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.8E-28 219.0 3.6 216 265-543 91-337 (386)
88 4glp_A Monocyte differentiatio 99.9 2.3E-22 7.8E-27 202.3 12.8 154 246-400 93-264 (310)
89 2ast_B S-phase kinase-associat 99.9 3.6E-23 1.2E-27 211.1 6.7 230 268-555 70-312 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 8E-22 2.7E-26 190.3 15.1 38 488-525 179-218 (239)
91 1h6u_A Internalin H; cell adhe 99.9 1.7E-21 5.9E-26 195.3 17.5 193 266-550 39-231 (308)
92 2ast_B S-phase kinase-associat 99.9 2.8E-23 9.7E-28 211.8 3.5 198 195-397 47-257 (336)
93 2xwt_C Thyrotropin receptor; s 99.9 2.6E-21 8.7E-26 186.8 16.8 196 196-397 32-236 (239)
94 1h6u_A Internalin H; cell adhe 99.9 3.7E-21 1.3E-25 192.8 16.1 206 226-525 25-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 3.1E-20 1.1E-24 189.9 16.4 241 247-548 12-258 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 184.4 19.5 198 196-397 31-233 (350)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-20 5.4E-25 178.2 10.9 157 342-554 14-171 (220)
98 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 171.3 16.1 175 319-555 10-184 (208)
99 2v9t_B SLIT homolog 2 protein 99.8 2.3E-20 8E-25 177.1 10.9 156 342-553 14-169 (220)
100 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 192.9 17.5 188 269-536 60-254 (571)
101 2o6s_A Variable lymphocyte rec 99.8 2.6E-19 9E-24 168.6 15.5 160 196-362 29-188 (208)
102 2xot_A Amphoterin-induced prot 99.8 5.4E-20 1.8E-24 188.9 11.5 179 319-552 21-205 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 1.9E-19 6.4E-24 170.8 13.8 155 366-576 14-169 (220)
104 2xot_A Amphoterin-induced prot 99.8 3.4E-19 1.2E-23 182.9 14.6 176 295-526 21-203 (361)
105 3cvr_A Invasion plasmid antige 99.8 8.3E-19 2.8E-23 188.5 18.0 196 221-513 60-255 (571)
106 3e6j_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 167.4 16.0 156 341-553 21-176 (229)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 4.1E-19 1.4E-23 168.4 13.6 156 365-576 13-170 (220)
108 1h6t_A Internalin B; cell adhe 99.8 1.3E-18 4.5E-23 172.6 16.6 170 315-550 45-214 (291)
109 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.5E-23 166.2 15.7 156 364-576 20-176 (229)
110 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.5E-23 172.0 13.1 171 266-526 44-214 (291)
111 4ezg_A Putative uncharacterize 99.8 3.9E-18 1.4E-22 158.9 13.3 153 337-550 42-195 (197)
112 1m9s_A Internalin B; cell inva 99.8 6.3E-18 2.1E-22 183.8 15.6 166 222-400 23-188 (605)
113 1w8a_A SLIT protein; signaling 99.8 1.5E-18 5.2E-23 160.8 9.2 91 463-553 53-143 (192)
114 1m9s_A Internalin B; cell inva 99.7 1.8E-17 6E-22 180.3 17.2 106 288-400 39-144 (605)
115 1dce_A Protein (RAB geranylger 99.7 1.1E-20 3.7E-25 204.4 -9.3 87 464-553 463-550 (567)
116 1w8a_A SLIT protein; signaling 99.7 1E-17 3.5E-22 155.2 11.9 181 342-581 11-192 (192)
117 3sb4_A Hypothetical leucine ri 99.7 1.1E-17 3.7E-22 169.5 11.1 289 97-394 24-328 (329)
118 1xeu_A Internalin C; cellular 99.7 7.8E-18 2.7E-22 164.3 9.2 169 316-551 19-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 5.4E-20 1.8E-24 198.9 -8.7 203 266-543 347-567 (567)
120 3sb4_A Hypothetical leucine ri 99.7 2E-17 6.7E-22 167.6 10.3 292 5-322 25-327 (329)
121 4ezg_A Putative uncharacterize 99.7 8.4E-17 2.9E-21 149.8 13.2 151 170-329 43-194 (197)
122 1xeu_A Internalin C; cellular 99.7 2.6E-17 8.7E-22 160.6 8.5 167 220-400 19-185 (263)
123 2wfh_A SLIT homolog 2 protein 99.7 6.1E-17 2.1E-21 149.8 9.6 131 366-553 13-143 (193)
124 2wfh_A SLIT homolog 2 protein 99.7 2E-16 7E-21 146.3 12.6 113 463-576 30-143 (193)
125 2ell_A Acidic leucine-rich nuc 99.7 2.4E-16 8.3E-21 142.7 12.3 135 362-551 23-162 (168)
126 4b8c_D Glucose-repressible alc 99.7 1.7E-17 5.9E-22 185.1 5.0 97 309-408 217-313 (727)
127 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.7E-21 142.6 11.1 139 337-531 22-165 (168)
128 2je0_A Acidic leucine-rich nuc 99.7 3.1E-16 1.1E-20 138.8 10.9 129 362-545 16-149 (149)
129 4fdw_A Leucine rich hypothetic 99.7 7.8E-15 2.7E-19 151.5 22.4 264 28-327 112-381 (401)
130 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.4E-19 149.9 22.8 123 195-325 113-235 (401)
131 4b8c_D Glucose-repressible alc 99.6 8.7E-17 3E-21 179.4 5.5 129 277-409 210-338 (727)
132 2o6r_A Variable lymphocyte rec 99.6 1.7E-15 5.8E-20 138.3 13.0 91 463-553 51-141 (177)
133 2je0_A Acidic leucine-rich nuc 99.6 5.9E-16 2E-20 137.1 9.2 129 338-521 16-149 (149)
134 2o6r_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 134.0 13.2 133 341-529 9-141 (177)
135 4fs7_A Uncharacterized protein 99.6 1.4E-13 4.9E-18 142.8 23.0 315 162-546 62-376 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.6 6.5E-15 2.2E-19 134.3 10.3 86 463-550 63-154 (176)
137 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.9E-18 143.6 21.1 289 91-397 87-376 (394)
138 1ds9_A Outer arm dynein; leuci 99.6 1.5E-16 5.2E-21 148.2 -2.0 136 355-550 40-186 (198)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.6E-19 130.7 10.5 132 337-526 17-154 (176)
140 3g39_A Variable lymphocyte rec 99.5 4.3E-14 1.5E-18 127.8 11.1 92 463-554 29-120 (170)
141 3g39_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 126.3 10.2 109 465-576 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.5 1.3E-13 4.4E-18 125.0 11.1 91 463-553 32-122 (174)
143 1ds9_A Outer arm dynein; leuci 99.5 4.8E-16 1.6E-20 144.8 -5.5 138 359-554 14-158 (198)
144 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.9E-18 123.7 10.5 108 466-576 14-122 (174)
145 4gt6_A Cell surface protein; l 99.5 1.2E-11 4.2E-16 128.2 25.2 336 18-399 52-390 (394)
146 4gt6_A Cell surface protein; l 99.4 4.5E-11 1.5E-15 124.0 25.9 307 173-547 66-389 (394)
147 3un9_A NLR family member X1; l 99.3 1.6E-13 5.3E-18 140.4 0.7 164 339-550 72-253 (372)
148 2ifg_A High affinity nerve gro 99.3 4.4E-12 1.5E-16 129.3 10.1 86 464-550 31-117 (347)
149 2ifg_A High affinity nerve gro 99.3 3.2E-12 1.1E-16 130.4 7.9 107 468-576 12-120 (347)
150 3un9_A NLR family member X1; l 99.2 9.5E-13 3.2E-17 134.6 -2.4 63 171-233 72-139 (372)
151 4h09_A Hypothetical leucine ri 99.2 2.2E-09 7.5E-14 110.7 22.6 302 25-363 42-356 (379)
152 4h09_A Hypothetical leucine ri 99.2 6.1E-09 2.1E-13 107.3 25.9 124 170-302 45-168 (379)
153 2ra8_A Uncharacterized protein 98.9 9.3E-10 3.2E-14 111.3 6.7 83 463-547 251-341 (362)
154 2ra8_A Uncharacterized protein 98.9 2.2E-09 7.4E-14 108.6 8.1 84 170-255 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 2.8E-08 9.6E-13 90.6 3.8 44 357-400 30-78 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 4.8E-08 1.6E-12 89.0 4.3 120 23-159 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 2.1E-07 7.3E-12 89.0 7.3 78 463-542 169-257 (267)
158 3rw6_A Nuclear RNA export fact 98.4 1.1E-07 3.6E-12 91.1 2.2 54 463-518 195-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 5.6E-07 1.9E-11 79.6 2.1 84 464-547 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.8 6.9E-06 2.3E-10 72.6 2.6 34 221-254 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 7.7E-05 2.6E-09 67.2 2.5 41 360-400 38-83 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00026 9E-09 63.7 5.9 115 26-157 38-168 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00099 3.4E-08 56.0 6.8 55 468-524 12-67 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0011 3.8E-08 55.7 6.7 57 8-67 11-68 (130)
165 2lz0_A Uncharacterized protein 71.4 4 0.00014 31.8 4.0 49 14-64 5-53 (100)
166 2k1k_A Ephrin type-A receptor 46.2 30 0.001 21.2 3.8 17 608-624 14-30 (38)
167 2lz0_A Uncharacterized protein 44.8 50 0.0017 25.4 6.0 46 475-521 7-52 (100)
168 2l9u_A Receptor tyrosine-prote 33.7 67 0.0023 18.8 3.7 21 610-630 12-32 (40)
169 4gnt_B Carbohydrate-responsive 31.2 16 0.00055 19.3 0.8 15 629-643 9-23 (26)
170 3s8f_C Cytochrome C oxidase po 27.6 74 0.0025 18.9 3.2 15 611-625 15-29 (34)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.6e-69 Score=611.03 Aligned_cols=580 Identities=34% Similarity=0.456 Sum_probs=396.7
Q ss_pred CCCCCCCCEEeCCCCcCcccCCc--cccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhh--hc
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQ--CLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSV--LA 76 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~ 76 (659)
|+++++|++|||++|.+++.+|. .++++++|++|+|++|.+.+.+|...+.++++|++|++++|.+++..+... +.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 45778888888888888877777 788888888888888888766663333667777777777776665443221 11
Q ss_pred ----------------------cCCC-----CccccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEE
Q 042632 77 ----------------------NHSR-----LEHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILF 129 (659)
Q Consensus 77 ----------------------~l~~-----L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (659)
++.+ |++|++++.+|. ++++++|++|++++|.+++.+|..+ ..+++|++|+
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~ 253 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLN 253 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEE
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEE
Confidence 2222 236777776666 8888888889988888886667665 4888899999
Q ss_pred ccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCcc
Q 042632 130 LFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSG 209 (659)
Q Consensus 130 L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 209 (659)
+++|.+++..+.. .+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+.+
T Consensus 254 Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 332 (768)
T 3rgz_A 254 ISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332 (768)
T ss_dssp CCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence 9888887654333 678888888888888888888777655888888888888887888888888888888888888877
Q ss_pred ccChhhhhCCCCCCEEEccCccccccCCcCCCCCC-CCCEEEccCC--------------------------CCCccccc
Q 042632 210 ELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLT-QLAWLYLSDN--------------------------QFTGRLEE 262 (659)
Q Consensus 210 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n--------------------------~i~~~~~~ 262 (659)
.+|...+..+++|++|++++|++.+..|..+.+++ +|++|++++| .+++..|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 78877667788888888888877766666555444 4555555544 44444555
Q ss_pred cccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCC
Q 042632 263 GLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSL 341 (659)
Q Consensus 263 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L 341 (659)
.+..+++|++|++++|.+++..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+... .+++|
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 492 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence 55555555555555555555555555555555555555555555555555555556666666665555444332 55566
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCC
Q 042632 342 RHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFN 421 (659)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~ 421 (659)
++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+..............
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 66666666665555666666666666666666665556666666666666666666666666655544332211110000
Q ss_pred -Cceeec-----------cccccccCC---cccccccccceEeeeccccc---cccccccccccEEEccCCcCcccCChh
Q 042632 422 -GFVIWH-----------GILLDASGR---RLSRIKSTSRNKFMAKNRYE---SYKGDVLNYMTGLDLSSNELTGDIPSE 483 (659)
Q Consensus 422 -~~~~~~-----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 483 (659)
...... ...+...+. .+..+...... ....+.+. ......+++|+.|||++|+++|.+|..
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS-CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred ccccccccccccccccccccccccccccchhhhcccccccc-ccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 000000 000000000 00000000000 00000000 011234788999999999999999999
Q ss_pred hhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCc
Q 042632 484 IGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDE 563 (659)
Q Consensus 484 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~ 563 (659)
++.+++|+.|+|++|+++|.+|..|+.+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|...+++++..
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCCCCCCCC
Q 042632 564 NNYRGNPLLCGPPVLKNCSSDL 585 (659)
Q Consensus 564 ~~~~~N~~~c~~~~~~~C~~~~ 585 (659)
.+|.|||++||+|.. .|+...
T Consensus 732 ~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 732 AKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGGCSCTEEESTTSC-CCCSCC
T ss_pred HHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999976 897654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-61 Score=549.02 Aligned_cols=560 Identities=29% Similarity=0.375 Sum_probs=402.2
Q ss_pred CCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChh--hhcCCCCCCEEEccCcccccccChhhhccC
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPIS--VFANLTSLEYLSLSDKKFQGSFSLSVLANH 78 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 78 (659)
+.++++|+.++++.+.+. ..|+.|+++++|++|+|++|.+.|.+| . .++++++|++|++++|.+.+..+.....++
T Consensus 73 l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp TTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred HhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence 456788888888888775 466889999999999999999988788 5 799999999999999999877665544555
Q ss_pred CCCc-----cccccccchhh---hhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccE
Q 042632 79 SRLE-----HCNISGTIASF---LQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLH 150 (659)
Q Consensus 79 ~~L~-----~~~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~ 150 (659)
.+|+ +|++++..+.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+++..+....+++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCCE
Confidence 5444 78888888777 78899999999999999866664 4789999999999999876555668889999
Q ss_pred EEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCc
Q 042632 151 LVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHN 230 (659)
Q Consensus 151 L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 230 (659)
|++++|.+.+.+|..+.. +++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..++..+++|++|++++|
T Consensus 228 L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp EECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS
T ss_pred EECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC
Confidence 999999998888887765 889999999999888766654 78888888888888887888776555688888888888
Q ss_pred cccccCCcCCCCCCCCCEEEccCCCCCcccccc-ccCCCCCcEEEeecccccCCCChhhhCCC-CCCEEEccCCcccccC
Q 042632 231 LFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEG-LLNAPSLYILDVSNNMLSGQLPHWAGNFS-NLDVLLMSRNSLEGDV 308 (659)
Q Consensus 231 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~ 308 (659)
++.+..|..+.++++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+..
T Consensus 305 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 888888888888888888888888887666654 77788888888888888777777766665 6666666666666555
Q ss_pred CccCCC--CCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccC
Q 042632 309 SVPLSN--LQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCH 385 (659)
Q Consensus 309 ~~~l~~--l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (659)
+..+.. +++|++|++++|.+++..+... .+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 555444 4555566666555554433322 5555555555555555555555555555555555555555555555555
Q ss_pred CCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccc-ccc--ccc
Q 042632 386 LRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYE-SYK--GDV 462 (659)
Q Consensus 386 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 462 (659)
+++|++|++++|++++.+|..+.+++.+.......+......... +...+ ......+..+.+. ..+ ...
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-------~~~l~-~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-------IGRLE-NLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-------GGGCT-TCCEEECCSSCCEEECCGGGGG
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-------HhcCC-CCCEEECCCCcccCcCCHHHcC
Confidence 555555555555555555555554443332222211111000000 00000 0011111111111 011 123
Q ss_pred cccccEEEccCCcCcccCCh------------------------------------------------------------
Q 042632 463 LNYMTGLDLSSNELTGDIPS------------------------------------------------------------ 482 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~------------------------------------------------------------ 482 (659)
+++|+.||+++|++++.+|.
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 55666666666666555554
Q ss_pred ----------hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCC
Q 042632 483 ----------EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPV 552 (659)
Q Consensus 483 ----------~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 552 (659)
.++.+++|+.|+|++|+++|.+|..|+.+++|+.|+|++|.++|.+|+.+.++++|++||+++|+++|.+
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence 4455678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 553 PNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 553 p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
|.. ..++.++.+++++|+.....|
T Consensus 697 p~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 697 PQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ChHHhCCCCCCEEECcCCcccccCC
Confidence 987 778889999999998765433
No 3
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-56 Score=513.83 Aligned_cols=488 Identities=21% Similarity=0.229 Sum_probs=363.4
Q ss_pred CCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcc
Q 042632 4 LKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEH 83 (659)
Q Consensus 4 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (659)
.+++++|||++|.+++..|.+|.++++|++|+|++|...+.++..+|.++++|++|+|++|.+++.
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-------------- 88 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-------------- 88 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE--------------
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc--------------
Confidence 468999999999999888999999999999999999766678658899999999999999988754
Q ss_pred ccccccchhhhhCCCCCCEEEccCccccccCchH-HhhcCCCCCEEEccCcccccccC--CCCCCCCccEEEcccCcCcc
Q 042632 84 CNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTW-LLQNNTKLEILFLFNNFLTGRLH--LPDSKRDLLHLVISNNNFIG 160 (659)
Q Consensus 84 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~L~~L~l~~n~l~~ 160 (659)
.|..|.++++|++|++++|.+++.+|.. .+..+++|++|++++|.+++... ....+++|++|++++|.+.+
T Consensus 89 ------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 89 ------HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp ------CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred ------CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 4556666666777777777666444432 23466667777777766665432 12356667777777766665
Q ss_pred cCChhhhhcC--CCCcEEEcccCcccccCChhhcCCCC------CCEEeCcCCcCccccChhhh----------------
Q 042632 161 TLPDNFGVIL--PELVYLDMSQNSFVGSIPPSTGYMER------LLFLDLSSNNFSGELPKQFL---------------- 216 (659)
Q Consensus 161 ~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~---------------- 216 (659)
..+..+.. + ++|+.|++++|.+.+..|..++.+.+ |+.|++++|.+.+.++..+.
T Consensus 163 ~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 55555543 3 56666677666666555555554444 66666666665544443322
Q ss_pred -------------------hC--CCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEe
Q 042632 217 -------------------TG--CVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDV 275 (659)
Q Consensus 217 -------------------~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 275 (659)
.+ .++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 22 257888888888888777777888888888888888888777777888888888888
Q ss_pred ecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCC
Q 042632 276 SNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNI 355 (659)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 355 (659)
++|.+++..+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++.. .+++|+.|++++|+++ .+
T Consensus 322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~L~l~~N~l~-~l 396 (844)
T 3j0a_A 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV-TL 396 (844)
T ss_dssp ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSEEEEESCCCC-CC
T ss_pred CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcchhccCCCCcc-cc
Confidence 888887777778888888888888888887777777888888888888888876433 2677888888888877 44
Q ss_pred chhhhcCCCCceEecCCCcccccCC-ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccccc
Q 042632 356 PHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDAS 434 (659)
Q Consensus 356 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (659)
|.. ..+++.|++++|++++... ..+..+++|+.|++++|++++..+....
T Consensus 397 ~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------- 447 (844)
T 3j0a_A 397 PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP-------------------------- 447 (844)
T ss_dssp CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS--------------------------
T ss_pred ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc--------------------------
Confidence 432 4567888888888874322 2345788888888888888744332111
Q ss_pred CCcccccccccceEeeeccccccccccccccccEEEccCCcCc-----ccCChhhhccccCCEEeCCCCcCcccCCcccc
Q 042632 435 GRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELT-----GDIPSEIGLLQELHALNLSHNHFSGSIPRSFS 509 (659)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~ 509 (659)
..+++|+.|++++|.++ +..+..|..+++|++|+|++|++++..|..|.
T Consensus 448 --------------------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 448 --------------------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp --------------------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred --------------------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence 11578999999999997 34456788999999999999999988888999
Q ss_pred ccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCCCCC
Q 042632 510 ILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 510 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~ 576 (659)
.+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|.. +..+..+++++||+.|+|+
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 999999999999999977776665 88999999999999988854 5678888999999999665
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.4e-55 Score=495.63 Aligned_cols=540 Identities=21% Similarity=0.168 Sum_probs=407.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCc--
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLE-- 82 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~-- 82 (659)
+++++|+|++|.+++..+.+|.++++|++|+|++|.+. .++...|+++++|++|++++|.+++.. ...+.++.+|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCEE
Confidence 47899999999998777778999999999999999988 444378899999999999999887543 33344444444
Q ss_pred ---cccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCC---CCCCCccEEEcccC
Q 042632 83 ---HCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLP---DSKRDLLHLVISNN 156 (659)
Q Consensus 83 ---~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~---~~~~~L~~L~l~~n 156 (659)
+|++++..+..++++++|++|++++|.+++..|.. +.++++|++|++++|.+++..... ..+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 67787777788888899999999999888554544 347888999999988887654321 24578888888888
Q ss_pred cCcccCChhhhh--------------------------cCCCCcEEEcccCcccccCChhhcCCCC--CCEEeCcCCcCc
Q 042632 157 NFIGTLPDNFGV--------------------------ILPELVYLDMSQNSFVGSIPPSTGYMER--LLFLDLSSNNFS 208 (659)
Q Consensus 157 ~l~~~~~~~~~~--------------------------~l~~L~~L~L~~n~i~~~~~~~~~~l~~--L~~L~L~~n~l~ 208 (659)
.+.+..|..+.. ..++|++|++++|.+.+..|..+..++. |++|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 887666654432 1256788888888888777777777754 889999988888
Q ss_pred cccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCc-----ccc----ccccCCCCCcEEEeeccc
Q 042632 209 GELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTG-----RLE----EGLLNAPSLYILDVSNNM 279 (659)
Q Consensus 209 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-----~~~----~~~~~l~~L~~L~L~~n~ 279 (659)
.++...+..+++|++|++++|++.+..+..|.++++|++|++++|...+ .+| ..+..+++|++|++++|.
T Consensus 262 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 -VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp -EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred -ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 4444445788889999999888888888888888888888888765442 122 267778888888888888
Q ss_pred ccCCCChhhhCCCCCCEEEccCCcccc--cCCccCCCC--CCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCC
Q 042632 280 LSGQLPHWAGNFSNLDVLLMSRNSLEG--DVSVPLSNL--QVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGN 354 (659)
Q Consensus 280 l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~ 354 (659)
+++..+..+..+++|++|++++|.+.. .....+..+ +.|+.|++++|++.+..+... .+++|+.|++++|.+++.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 888777888888888888888886432 222233322 478888888888877655444 778888888888888765
Q ss_pred Cc-hhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCC--cccchhhccccccccccCCCCCceeeccccc
Q 042632 355 IP-HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLN--GSIPSCFTNISLWMEESDSFNGFVIWHGILL 431 (659)
Q Consensus 355 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 431 (659)
+| ..+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+.+++.+.. +
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~---------------L 485 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI---------------L 485 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE---------------E
T ss_pred cCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE---------------E
Confidence 54 67788888888888888888777778888888888888888876 456666666543322 2
Q ss_pred cccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCC--------hhhhccccCCEEeCCCCcCccc
Q 042632 432 DASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIP--------SEIGLLQELHALNLSHNHFSGS 503 (659)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~~~ 503 (659)
+.+++.+..++. .....+++|+.|++++|++++..+ ..++.+++|++|+|++|+++..
T Consensus 486 ~Ls~N~l~~i~~--------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 486 DLSNNNIANIND--------------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp ECCSSCCCCCCT--------------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCcCCh--------------hhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 222222221110 001337889999999999986422 2378899999999999999965
Q ss_pred CCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-C-CCCCCCcCccCCCCCCCCCCC
Q 042632 504 IPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-R-QFANFDENNYRGNPLLCGPPV 577 (659)
Q Consensus 504 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~-~~~~l~~~~~~~N~~~c~~~~ 577 (659)
.+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++.+|.. . .++++..+++++|||.|+|+.
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 5567999999999999999999777777899999999999999999977654 2 577889999999999998764
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-56 Score=491.61 Aligned_cols=493 Identities=23% Similarity=0.232 Sum_probs=413.3
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
+++++|+|++|.+++..|.+|.++++|++|+|++|++. .++..+|+++++|++|++++|.+++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~---------------- 95 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIF---------------- 95 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSE----------------
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccc----------------
Confidence 46889999999998877888999999999999999988 4543788999999999999888764
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccccc-CCCCCCCCccEEEcccCcCcccCC
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL-HLPDSKRDLLHLVISNNNFIGTLP 163 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~ 163 (659)
..|..++++++|++|++++|.++ .++...+.++++|++|++++|.+++.. .....+++|++|++++|.+.+..+
T Consensus 96 ----~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 96 ----MAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp ----ECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred ----cChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 35677889999999999999998 443333568999999999999998753 233358899999999999886666
Q ss_pred hhhhhcCCCCc--EEEcccCcccccCChhhcCCCCCCEEeCcCCcCc-------------------------cccChhhh
Q 042632 164 DNFGVILPELV--YLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFS-------------------------GELPKQFL 216 (659)
Q Consensus 164 ~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~ 216 (659)
..+.. +++|+ +|++++|.+.+..|..+. ..+|+.|++++|... ..++...+
T Consensus 171 ~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 171 EDMSS-LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp HHHHT-TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred hhhhh-hcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 66654 88888 899999999876665544 467888888877511 02222333
Q ss_pred hCCC--CCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCC
Q 042632 217 TGCV--SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNL 294 (659)
Q Consensus 217 ~~l~--~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 294 (659)
.++. +|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC
Confidence 3332 7899999999999888888999999999999999998 678889999999999999999998778889999999
Q ss_pred CEEEccCCcccccCCc-cCCCCCCCcEEEccCCcCcCcC--C-CCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEec
Q 042632 295 DVLLMSRNSLEGDVSV-PLSNLQVTRILDISGNKLYGPL--E-FSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLL 370 (659)
Q Consensus 295 ~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 370 (659)
++|++++|.+.+..+. .+..+++|++|++++|.+.+.. + ....+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 9999999998865554 5889999999999999998764 3 3448899999999999998888889999999999999
Q ss_pred CCCcccccCCc-cccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEe
Q 042632 371 RGNNLQGNIPE-PLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKF 449 (659)
Q Consensus 371 ~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (659)
++|++++..+. .+..+++|++|++++|.+++..|..+..
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------- 447 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------------- 447 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------------------
Confidence 99999877654 4889999999999999998777777655
Q ss_pred eeccccccccccccccccEEEccCCcCccc---CChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 450 MAKNRYESYKGDVLNYMTGLDLSSNELTGD---IPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 450 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
+++|++|++++|++++. .+..++.+++|++|++++|++++..|..|+.+++|+.|++++|++++
T Consensus 448 -------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 448 -------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp -------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred -------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 67899999999999862 33678999999999999999998889999999999999999999999
Q ss_pred cCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 527 RIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 527 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
..|+.+.+++.| .|++++|++++.+|.. ..+++++.+++++||+.|+++
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999 9999999999987765 567788999999999999764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-54 Score=479.91 Aligned_cols=487 Identities=20% Similarity=0.178 Sum_probs=314.9
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
+++++|+|++|.+++..+.+|.++++|++|++++|.++ .++..+|.++++|++|++++|.+++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~---------------- 94 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQS---------------- 94 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCC----------------
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccc----------------
Confidence 45666666666666555556666666666666666665 4433556666666666666665553
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccc--ccCCCCCCCCccEEEcccCcCcccC
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTG--RLHLPDSKRDLLHLVISNNNFIGTL 162 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~ 162 (659)
..|..|+++++|++|++++|.++ .++...+.++++|++|++++|.+++ .+.....+++|++|++++|++++..
T Consensus 95 ----~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 95 ----FSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp ----CCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred ----cChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 23455666666666666666665 3332223466666666666666653 2223335566666666666665544
Q ss_pred ChhhhhcCCC----CcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEc-----------
Q 042632 163 PDNFGVILPE----LVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNL----------- 227 (659)
Q Consensus 163 ~~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l----------- 227 (659)
+..+.. +++ +++|++++|.+++..+..+. ..+|++|++++|.+.+......+..++.|+.+++
T Consensus 170 ~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 170 VNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp TTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred hhhhhh-hhccccccceeeccCCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 444332 332 23566666666533333332 3356666666666543333333455555555444
Q ss_pred ----------------------cCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCC
Q 042632 228 ----------------------SHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLP 285 (659)
Q Consensus 228 ----------------------~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 285 (659)
..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+|
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc
Confidence 33334443433 5566666677776666653 33 566666677777777666 3555
Q ss_pred hhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcC--C-CCCCCCCCcEEEccCCcCCCCCchhhhcC
Q 042632 286 HWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPL--E-FSSNHSSLRHLFLHNNSLNGNIPHLINED 362 (659)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 362 (659)
. + .+++|++|++++|...+.. .+..+++|++|++++|.+++.. + ....+++|++|++++|.+++ +|..+..+
T Consensus 324 ~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l 398 (606)
T 3vq2_A 324 T-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGL 398 (606)
T ss_dssp C-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC
T ss_pred c-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCC
Confidence 3 3 6666777777666443322 4556666777777776665542 1 12256667777777766653 44566666
Q ss_pred CCCceEecCCCcccccCC-ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccc
Q 042632 363 SNLRALLLRGNNLQGNIP-EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRI 441 (659)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (659)
++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|..+..
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------- 446 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-------------------------------- 446 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC--------------------------------
Confidence 677777777776665555 45666667777777777666555555544
Q ss_pred ccccceEeeeccccccccccccccccEEEccCCcCcc-cCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECc
Q 042632 442 KSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTG-DIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLS 520 (659)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 520 (659)
+++|+.|++++|++++ ..|..++.+++|++|+|++|++++..|..|+.+++|++|+++
T Consensus 447 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 447 ---------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ---------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 6789999999999997 478889999999999999999999889999999999999999
Q ss_pred CCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCC-CCCcCccCCCCCCCCCCC
Q 042632 521 YNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFA-NFDENNYRGNPLLCGPPV 577 (659)
Q Consensus 521 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~-~l~~~~~~~N~~~c~~~~ 577 (659)
+|++++.+|..+..+++|++|++++|+++..++....++ +++.+++++||+.|+++.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999889999999999999999999996444435554 588899999999997764
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.8e-53 Score=474.29 Aligned_cols=529 Identities=22% Similarity=0.196 Sum_probs=422.5
Q ss_pred CCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCC
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR 80 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 80 (659)
|+++++|++|+|++|.+++..|.+|+++++|++|+|++|.++ .+|..+|+++++|++|++++|.+++..+ ..+.++.+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~ 122 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKN 122 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTT
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccCh-hHccccCC
Confidence 356889999999999999888999999999999999999998 7886789999999999999999986543 33445554
Q ss_pred Cc-----cccccccchhhhhCCCCCCEEEccCccccccCchHHh-hcCCCCCEEEccCcccccccCCCC-----------
Q 042632 81 LE-----HCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLL-QNNTKLEILFLFNNFLTGRLHLPD----------- 143 (659)
Q Consensus 81 L~-----~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~----------- 143 (659)
|+ +|.+++..+..+.++++|++|++++|.+++..+..+. ..+++|++|++++|.+++......
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEEC
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhc
Confidence 44 7888888888999999999999999999954444331 256899999999999887543211
Q ss_pred -----------------CCCCccEEEcccCcCcccCChhhhhcCC--CCcEEEcccCcccccCChhhcCCCCCCEEeCcC
Q 042632 144 -----------------SKRDLLHLVISNNNFIGTLPDNFGVILP--ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSS 204 (659)
Q Consensus 144 -----------------~~~~L~~L~l~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 204 (659)
..++|+.|++++|.+.+..|..+.. ++ +|++|++++|.+++..|..++.+++|++|++++
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence 1267899999999998777777654 54 499999999999988888899999999999999
Q ss_pred CcCccccChhhhhCCCCCCEEEccCccccc---------cCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEe
Q 042632 205 NNFSGELPKQFLTGCVSLEFMNLSHNLFVG---------QIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDV 275 (659)
Q Consensus 205 n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 275 (659)
|.+.+..| ..+.++++|++|++++|...+ .....|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 282 n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 282 NNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp CCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 99984444 445889999999999875442 12236788999999999999999888888999999999999
Q ss_pred ecccccCC--CChhhhC--CCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCC--CCCCCCCCcEEEccCC
Q 042632 276 SNNMLSGQ--LPHWAGN--FSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLE--FSSNHSSLRHLFLHNN 349 (659)
Q Consensus 276 ~~n~l~~~--~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n 349 (659)
++|.+... ....+.. .++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..+ .+..+++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 99875422 2223332 3589999999999998888889999999999999999876544 3347889999999999
Q ss_pred cCCCCCchhhhcCCCCceEecCCCccc--ccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeec
Q 042632 350 SLNGNIPHLINEDSNLRALLLRGNNLQ--GNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWH 427 (659)
Q Consensus 350 ~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~ 427 (659)
++.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..|..++.+...
T Consensus 441 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L----------- 509 (680)
T 1ziw_A 441 KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL----------- 509 (680)
T ss_dssp SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-----------
T ss_pred CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEE-----------
Confidence 988777888888999999999999886 4678888899999999999999987777777766544332
Q ss_pred cccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCcc
Q 042632 428 GILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRS 507 (659)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 507 (659)
+.+++.+..+...... .. .......+++|+.|+|++|+++...+..|+.+++|++|+|++|++++..+..
T Consensus 510 ----~Ls~N~l~~~~~~~~~----~~--~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 579 (680)
T 1ziw_A 510 ----DLQHNNLARLWKHANP----GG--PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579 (680)
T ss_dssp ----ECCSSCCGGGGSTTST----TS--CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ----eCCCCCccccchhhcc----CC--cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhH
Confidence 2223322221100000 00 0001234789999999999999555567999999999999999999877778
Q ss_pred ccccCCCCEEECcCCcccccCChhhh-cCCCCCeEeccCCccccCCCC
Q 042632 508 FSILKMIESMDLSYNELSGRIPLELS-ELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 508 ~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~N~l~~~~p~ 554 (659)
|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 580 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred hCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 99999999999999999988888787 789999999999999998775
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-53 Score=470.20 Aligned_cols=491 Identities=20% Similarity=0.138 Sum_probs=376.0
Q ss_pred CCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCC
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR 80 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 80 (659)
|+++++|++|+|++|++++..|.+|.++++|++|+|++|.+.+..| ..|+++++|++|++++|.+++..+ ..+.++.+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~l~~-~~~~~l~~ 130 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFFIQTGISSIDF-IPLHNQKT 130 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEECTTSCCSCGGG-SCCTTCTT
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeeccccCcccCCc-chhccCCc
Confidence 4689999999999999998889999999999999999999984445 899999999999999999885311 11122222
Q ss_pred C-----ccccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCC--EEEccCcccccccCCCCCCCCccEEEc
Q 042632 81 L-----EHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLE--ILFLFNNFLTGRLHLPDSKRDLLHLVI 153 (659)
Q Consensus 81 L-----~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~~~L~~L~l 153 (659)
| ++|++++.....+..+++|++|++++|.++ .++...+..+++|+ .|++++|.+++..........|++|++
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred ccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 2 234444432222223445555555555544 22222223444444 445555554444333334444455555
Q ss_pred ccCcCcccCChhhhhcCCCCcEEEcccCccc-----ccCChhhcCCC--CCCEEeCcCCcCccccChhhhhCCCCCCEEE
Q 042632 154 SNNNFIGTLPDNFGVILPELVYLDMSQNSFV-----GSIPPSTGYME--RLLFLDLSSNNFSGELPKQFLTGCVSLEFMN 226 (659)
Q Consensus 154 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 226 (659)
++|. .++..+.. +.+++...+....+. ...+..+..+. +|+.|++++|.+. .++...+..+++|++|+
T Consensus 210 ~~~~---~~~~~~~~-l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 210 GGTQ---NLLVIFKG-LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELD 284 (606)
T ss_dssp TTCS---CHHHHHHH-TTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEE
T ss_pred CCch---hHHHHhhh-ccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEe
Confidence 4443 11222211 222222222111111 11122233332 7899999999998 77777778999999999
Q ss_pred ccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCCh-hhhCCCCCCEEEccCCccc
Q 042632 227 LSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPH-WAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 227 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~ 305 (659)
+++|++. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus 285 l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred ccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 9999998 5677899999999999999999988888999999999999999999865554 5889999999999999998
Q ss_pred ccC--CccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCch-hhhcCCCCceEecCCCcccccCCc
Q 042632 306 GDV--SVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPH-LINEDSNLRALLLRGNNLQGNIPE 381 (659)
Q Consensus 306 ~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 381 (659)
+.. +..+..+++|++|++++|.+.+..+... .+++|++|++++|++++..+. .+..+++|++|++++|.+.+..|.
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence 766 7789999999999999999987766544 889999999999999876554 488999999999999999988899
Q ss_pred cccCCCCCcEEEccCCcCCcccc---hhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccc
Q 042632 382 PLCHLRKLSIVDISCNNLNGSIP---SCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESY 458 (659)
Q Consensus 382 ~~~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (659)
.+..+++|++|++++|++++... ..+..
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------------------------------------------- 474 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------------------------------------------- 474 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------------------------------------------
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhcc-------------------------------------------------
Confidence 99999999999999999975321 22322
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCC
Q 042632 459 KGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYL 538 (659)
Q Consensus 459 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 538 (659)
+++|+.|++++|++++..|..|+.+++|++|+|++|++++..|..+..++.| .|++++|.+++..|+.+..+++|
T Consensus 475 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 475 ----LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred ----CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC
Confidence 6789999999999999989999999999999999999999999999999999 99999999999999999999999
Q ss_pred CeEeccCCccccCCCC
Q 042632 539 AIFNVSYNDLLGPVPN 554 (659)
Q Consensus 539 ~~L~l~~N~l~~~~p~ 554 (659)
+.|++++|++.|.++.
T Consensus 550 ~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 550 RTINLRQNPLDCTCSN 565 (606)
T ss_dssp SEEECTTCCEECSGGG
T ss_pred CEEeCCCCCccccCCc
Confidence 9999999999997664
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.2e-52 Score=459.74 Aligned_cols=468 Identities=21% Similarity=0.164 Sum_probs=363.5
Q ss_pred CCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCC
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR 80 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 80 (659)
|+++++|++|++++|.+++..|.+|.++++|++|+|++|.++ .++...|+++++|++|++++|.+++..+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~--------- 121 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENLVAVETKLASLES--------- 121 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEEECTTSCCCCSSS---------
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcccCCEEEccCCccccccc---------
Confidence 468899999999999999888999999999999999999998 5533899999999999999999875432
Q ss_pred CccccccccchhhhhCCCCCCEEEccCccccc-cCchHHhhcCCCCCEEEccCcccccccCCCC-CCCC----ccEEEcc
Q 042632 81 LEHCNISGTIASFLQYQYDLRYIDLSHNNLAG-TIPTWLLQNNTKLEILFLFNNFLTGRLHLPD-SKRD----LLHLVIS 154 (659)
Q Consensus 81 L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~----L~~L~l~ 154 (659)
..++++++|++|++++|.+++ .+|..+. ++++|++|++++|.+++...... .+++ +.+++++
T Consensus 122 -----------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 122 -----------FPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp -----------SCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred -----------cccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 334445555555555555542 2343332 45555555555555544322111 1111 2245555
Q ss_pred cCcCcccCChhhhhcCCCCcEEEcccCccc-ccCChhhcCCCCCC--------------------------------EEe
Q 042632 155 NNNFIGTLPDNFGVILPELVYLDMSQNSFV-GSIPPSTGYMERLL--------------------------------FLD 201 (659)
Q Consensus 155 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~--------------------------------~L~ 201 (659)
+|.+.+ ++...+. ..+|++|++++|.+. +..|..+..++.++ .++
T Consensus 190 ~n~l~~-~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 190 LNPIDF-IQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TCCCCE-ECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred CCCcce-eCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 555442 2222222 224555555555443 22333344444444 344
Q ss_pred C-cCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccc
Q 042632 202 L-SSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNML 280 (659)
Q Consensus 202 L-~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 280 (659)
+ ..+.+.+.+|. +..+++|+.|++++|.+... + .+..+++|++|++++|.+. .+| .+ .+++|+.|++++|..
T Consensus 268 l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 268 LTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp ECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSS
T ss_pred ccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcC
Confidence 4 56677766665 57889999999999999753 3 7889999999999999994 667 45 899999999999966
Q ss_pred cCCCChhhhCCCCCCEEEccCCccccc--CCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCc-h
Q 042632 281 SGQLPHWAGNFSNLDVLLMSRNSLEGD--VSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIP-H 357 (659)
Q Consensus 281 ~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 357 (659)
.+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.......+++|++|++++|++.+..+ .
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChh
Confidence 5443 577899999999999999866 3778889999999999999998866666689999999999999998777 6
Q ss_pred hhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcc-cchhhccccccccccCCCCCceeeccccccccCC
Q 042632 358 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGS-IPSCFTNISLWMEESDSFNGFVIWHGILLDASGR 436 (659)
Q Consensus 358 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (659)
.+..+++|++|++++|.+++..|..+..+++|++|++++|.+++. +|..+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--------------------------- 471 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN--------------------------- 471 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc---------------------------
Confidence 889999999999999999988999999999999999999999873 5666654
Q ss_pred cccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCE
Q 042632 437 RLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIES 516 (659)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 516 (659)
+++|+.|++++|++++..|..++.+++|++|+|++|++++..|..|+.+++|++
T Consensus 472 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 472 --------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred --------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 678999999999999999999999999999999999999999999999999999
Q ss_pred EECcCCcccccCChhhhcCC-CCCeEeccCCccccCCCCC
Q 042632 517 MDLSYNELSGRIPLELSELN-YLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 517 L~Ls~N~l~~~~p~~l~~l~-~L~~L~l~~N~l~~~~p~~ 555 (659)
|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999 7777799997 5999999999999977754
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.4e-51 Score=468.59 Aligned_cols=516 Identities=20% Similarity=0.160 Sum_probs=394.3
Q ss_pred CCCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccCh-hhhccC
Q 042632 1 ICELKNLVELNLSGNKFDGSL-PQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSL-SVLANH 78 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l 78 (659)
|+++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..| ..|+++++|++|+|++|.+++..+. ..+.++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 568999999999999654444 8899999999999999999984445 8999999999999999999874432 224444
Q ss_pred CCCc-----cccccccch-hhhhCCCCCCEEEccCccccccCchHHhhcC--CCCCEEEccCcccccccCCC-CCC----
Q 042632 79 SRLE-----HCNISGTIA-SFLQYQYDLRYIDLSHNNLAGTIPTWLLQNN--TKLEILFLFNNFLTGRLHLP-DSK---- 145 (659)
Q Consensus 79 ~~L~-----~~~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~-~~~---- 145 (659)
.+|+ +|.+++..+ ..++++++|++|++++|.+++..+..+. .+ ++|+.|++++|.+.+..... ..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCcc
Confidence 4444 566655433 4677777777777777777654554433 33 67777777777766532221 112
Q ss_pred --CCccEEEcccCcCcccCChhhhhcC--CCCcEEEcccCc---------ccccCChhhcCC--CCCCEEeCcCCcCccc
Q 042632 146 --RDLLHLVISNNNFIGTLPDNFGVIL--PELVYLDMSQNS---------FVGSIPPSTGYM--ERLLFLDLSSNNFSGE 210 (659)
Q Consensus 146 --~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~---------i~~~~~~~~~~l--~~L~~L~L~~n~l~~~ 210 (659)
..|+.|++++|.+.+..+..+...+ ..++.+.++.+. +.+..+..+..+ ++|+.|++++|.+. .
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~ 280 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-S 280 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-E
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc-c
Confidence 2377777777777666666554322 456666665322 222222333333 78999999999998 5
Q ss_pred cChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhC
Q 042632 211 LPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGN 290 (659)
Q Consensus 211 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 290 (659)
++...+..+++|+.|++++|++.+..+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 360 (844)
T 3j0a_A 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF 360 (844)
T ss_dssp ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS
T ss_pred cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC
Confidence 55555689999999999999999998999999999999999999999888999999999999999999999888888999
Q ss_pred CCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCC-chhhhcCCCCceEe
Q 042632 291 FSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNI-PHLINEDSNLRALL 369 (659)
Q Consensus 291 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 369 (659)
+++|++|++++|.+.+. ..+++|+.|++++|++..... ...+++.|++++|.+++.. +..+..+++|++|+
T Consensus 361 l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l~~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 361 LEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp CCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCCCC---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccccc---cccccceeecccCccccCchhhhhhcCCccceee
Confidence 99999999999998742 337899999999999985433 3568999999999998643 23456899999999
Q ss_pred cCCCcccccCCc-cccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceE
Q 042632 370 LRGNNLQGNIPE-PLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNK 448 (659)
Q Consensus 370 L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (659)
+++|++++..+. .+..+++|+.|++++|.+++..+..+..
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------------- 473 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW--------------------------------------- 473 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS---------------------------------------
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccch---------------------------------------
Confidence 999999865443 4567899999999999997433221100
Q ss_pred eeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccC
Q 042632 449 FMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRI 528 (659)
Q Consensus 449 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 528 (659)
-....+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+. ++|+.|+|++|++++..
T Consensus 474 ---------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 474 ---------DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp ---------SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCC
T ss_pred ---------hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCC
Confidence 0002267899999999999998899999999999999999999987777776 89999999999999998
Q ss_pred ChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCCCCCCCCCCCCC
Q 042632 529 PLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGPPVLKNCSSD 584 (659)
Q Consensus 529 p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~~~~C~~~ 584 (659)
|+.+ ++|+.+++++|++.|.++.. .+.......|...|+.+....|..+
T Consensus 543 ~~~~---~~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 543 PDVF---VSLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp SCCC---SSCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred hhHh---CCcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCccCCc
Confidence 8765 57999999999999977643 2222223456677887777788654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.9e-50 Score=439.44 Aligned_cols=482 Identities=20% Similarity=0.200 Sum_probs=335.5
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccccc
Q 042632 8 VELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNIS 87 (659)
Q Consensus 8 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~ 87 (659)
+.++.++.+++ .+|..+. +++++|++++|.++ .++..+|.++++|++|++++|++++.
T Consensus 10 ~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i------------------ 67 (570)
T 2z63_A 10 ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTI------------------ 67 (570)
T ss_dssp TEEECCSSCCS-SCCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEE------------------
T ss_pred cEEEeCCCCcc-ccCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCcc------------------
Confidence 34555555555 3444333 35666666666665 44435566666666666666554432
Q ss_pred ccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCC-CCCCCCccEEEcccCcCcc-cCChh
Q 042632 88 GTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHL-PDSKRDLLHLVISNNNFIG-TLPDN 165 (659)
Q Consensus 88 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~~~L~~L~l~~n~l~~-~~~~~ 165 (659)
.+..|.++++|++|++++|.++ .++...+.++++|++|++++|.++..+.. ...+++|++|++++|.+.+ .+|..
T Consensus 68 --~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 144 (570)
T 2z63_A 68 --EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (570)
T ss_dssp --CTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred --CcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh
Confidence 3344555556666666666655 33333334556666666666655554432 2355566666666665554 24555
Q ss_pred hhhcCCCCcEEEcccCcccccCChhhcCCCCC----CEEeCcCCcCccccChhhhhCCCCCCEEEccCccc---------
Q 042632 166 FGVILPELVYLDMSQNSFVGSIPPSTGYMERL----LFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLF--------- 232 (659)
Q Consensus 166 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i--------- 232 (659)
+.. +++|++|++++|.+++..+..++.+++| +.|++++|.+. .++...+... +|+.|++++|..
T Consensus 145 ~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~ 221 (570)
T 2z63_A 145 FSN-LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI 221 (570)
T ss_dssp GGG-CTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred hcc-cCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhh
Confidence 543 5666666666666655445555555555 55666666665 3333333332 455555555421
Q ss_pred ----------------------cccCCcCCCCCC--CCCEEEccCC-CCCccccccccCCCCCcEEEeecccccCCCChh
Q 042632 233 ----------------------VGQIFPKYMNLT--QLAWLYLSDN-QFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHW 287 (659)
Q Consensus 233 ----------------------~~~~~~~~~~l~--~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 287 (659)
.......+..++ .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..
T Consensus 222 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~ 300 (570)
T 2z63_A 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF 300 (570)
T ss_dssp HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC
T ss_pred cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh
Confidence 111112222222 2456666666 566677788888999999999999998 67888
Q ss_pred hhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCC--chhhhcCCCC
Q 042632 288 AGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNI--PHLINEDSNL 365 (659)
Q Consensus 288 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L 365 (659)
+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|
T Consensus 301 ~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp CSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred hccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence 8888 9999999999888 4443 4678899999999988765554 57889999999999988543 6788899999
Q ss_pred ceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccc-hhhccccccccccCCCCCceeeccccccccCCcccccccc
Q 042632 366 RALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIP-SCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKST 444 (659)
Q Consensus 366 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (659)
++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+.+
T Consensus 376 ~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------------------- 419 (570)
T 2z63_A 376 KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLS----------------------------------- 419 (570)
T ss_dssp CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTT-----------------------------------
T ss_pred CEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhc-----------------------------------
Confidence 9999999999855444 8899999999999999886555 23333
Q ss_pred cceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCc-ccCCccccccCCCCEEECcCCc
Q 042632 445 SRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFS-GSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
+++|++|++++|++++..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|+
T Consensus 420 ------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 420 ------------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp ------------------CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ------------------CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 678999999999999888999999999999999999997 5788999999999999999999
Q ss_pred ccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCCC
Q 042632 524 LSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPPV 577 (659)
Q Consensus 524 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~~ 577 (659)
+++..|..+..+++|++|++++|++++.+|.. ..+++++.+++++||+.|.++.
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99888999999999999999999999987764 6788889999999999997653
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.3e-48 Score=422.45 Aligned_cols=483 Identities=19% Similarity=0.182 Sum_probs=350.9
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
+...+.|.+++.++ .+|..+. ++|++|++++|.++ .++...|.++++|++|++++|++++.
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~--------------- 65 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTI--------------- 65 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEE---------------
T ss_pred CCCceEECCCCccc-cccccCC--CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCcc---------------
Confidence 44556788888888 6676654 68999999999998 45437899999999999998887743
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccc--cCCCCCCCCccEEEcccCcCcccC
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR--LHLPDSKRDLLHLVISNNNFIGTL 162 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~ 162 (659)
.+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++. +.....+++|++|++++|.+.+.+
T Consensus 66 -----~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 139 (549)
T 2z81_A 66 -----EGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139 (549)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred -----ChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence 4567888899999999999998 55555556899999999999998854 334557889999999999866667
Q ss_pred ChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccC---CcC
Q 042632 163 PDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQI---FPK 239 (659)
Q Consensus 163 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~---~~~ 239 (659)
|...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|++.+.. ...
T Consensus 140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 218 (549)
T 2z81_A 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218 (549)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccch
Confidence 6544445899999999999998888889999999999999999887 778777778899999999999988642 122
Q ss_pred CCCCCCCCEEEccCCCCCcccc----ccccCCCCCcEEEeecccccCCC------ChhhhCCCCCCEEEccCCcccccC-
Q 042632 240 YMNLTQLAWLYLSDNQFTGRLE----EGLLNAPSLYILDVSNNMLSGQL------PHWAGNFSNLDVLLMSRNSLEGDV- 308 (659)
Q Consensus 240 ~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~l~~n~l~~~~- 308 (659)
...+++|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+....
T Consensus 219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 298 (549)
T 2z81_A 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298 (549)
T ss_dssp CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG
T ss_pred hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh
Confidence 3457889999999998875433 33456788999999988876431 123456778888888877665321
Q ss_pred ----CccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCch---hhhcCCCCceEecCCCcccccCC
Q 042632 309 ----SVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPH---LINEDSNLRALLLRGNNLQGNIP 380 (659)
Q Consensus 309 ----~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~ 380 (659)
+..+....+|+.|++++|.+........ .+++|++|++++|++++..|. .++.+++|++|++++|++++..+
T Consensus 299 ~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp SCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred cccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 1111224578888888888764333332 577888888888888765543 35677888888888888874432
Q ss_pred --ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccc
Q 042632 381 --EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESY 458 (659)
Q Consensus 381 --~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (659)
..+..+++|++|++++|+++ .+|..+..
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------------------------------- 408 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQW------------------------------------------------- 408 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCC-------------------------------------------------
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcc-------------------------------------------------
Confidence 45777888888888888887 55554433
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCC
Q 042632 459 KGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYL 538 (659)
Q Consensus 459 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 538 (659)
+++|++|++++|+++ .+|..+ .++|++|+|++|++++.. ..+++|++|++++|+++ .+|+ ...+++|
T Consensus 409 ----~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L 475 (549)
T 2z81_A 409 ----PEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVL 475 (549)
T ss_dssp ----CTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTC
T ss_pred ----cccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccC
Confidence 456777777777776 334332 256777777777777432 45677777777777776 5565 3567777
Q ss_pred CeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 539 AIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 539 ~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
++|++++|++++.+|.. ..++.++.+++++||+.|+++
T Consensus 476 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 476 LVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 77777777777766653 556667777777777777654
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-48 Score=421.24 Aligned_cols=453 Identities=22% Similarity=0.240 Sum_probs=343.3
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccccc
Q 042632 8 VELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNIS 87 (659)
Q Consensus 8 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~ 87 (659)
++||+++|+++ .+|..+. ++|++|++++|.+. .++...|.++++|++|++++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~------------------- 59 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY------------------- 59 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCE-------------------
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCC-------------------
Confidence 68999999999 6787776 89999999999998 6766899999999999999998774
Q ss_pred ccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccccc--CCCCCCCCccEEEcccCcCcccCChh
Q 042632 88 GTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL--HLPDSKRDLLHLVISNNNFIGTLPDN 165 (659)
Q Consensus 88 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~ 165 (659)
..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++.. .....+++|++|++++|.+.+ ..
T Consensus 60 -~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 60 -LDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp -EEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred -cChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh
Confidence 35788999999999999999999 78875 7899999999999998642 344578889999999988775 23
Q ss_pred hhhcCCCC--cEEEcccCcc--cccCChhhcCCC-CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcc-------cc
Q 042632 166 FGVILPEL--VYLDMSQNSF--VGSIPPSTGYME-RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNL-------FV 233 (659)
Q Consensus 166 ~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-------i~ 233 (659)
+. .+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++...+..+++|+.+++++|. +.
T Consensus 132 ~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 132 VL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred cc-ccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 33 36777 9999999888 667777776655 334567888888777777777788888888888886 55
Q ss_pred ccCCcCCCCCCCCCEEEccCCCCCcccccccc---CCCCCcEEEeecccccCCCChhh-----hCCCCCCEEEccCCccc
Q 042632 234 GQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLL---NAPSLYILDVSNNMLSGQLPHWA-----GNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 234 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~ 305 (659)
+.++ .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+++.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 5444 677788888888888877653322211 14578888888888887777777 7788888888888877
Q ss_pred ccCC-ccCCCC---CCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccc--cC
Q 042632 306 GDVS-VPLSNL---QVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQG--NI 379 (659)
Q Consensus 306 ~~~~-~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~ 379 (659)
.+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++ .+
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 233 333332 56888888888775432 12467788888888888887777778888888888888888875 44
Q ss_pred CccccCCCCCcEEEccCCcCCcccchh-hccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccc
Q 042632 380 PEPLCHLRKLSIVDISCNNLNGSIPSC-FTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESY 458 (659)
Q Consensus 380 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (659)
|..+..+++|++|++++|.+++.+|.. +..
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~------------------------------------------------- 397 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSW------------------------------------------------- 397 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCC-------------------------------------------------
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhcc-------------------------------------------------
Confidence 566778888888888888887645543 222
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChh-hhcCCC
Q 042632 459 KGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLE-LSELNY 537 (659)
Q Consensus 459 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~ 537 (659)
+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++
T Consensus 398 ----l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 398 ----TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp ----CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred ----CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 56788888888888776666554 67888888888887 67777778888888888888887 45554 777888
Q ss_pred CCeEeccCCccccCCC
Q 042632 538 LAIFNVSYNDLLGPVP 553 (659)
Q Consensus 538 L~~L~l~~N~l~~~~p 553 (659)
|++|++++|+++|.++
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 8888888888877554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-47 Score=417.53 Aligned_cols=469 Identities=21% Similarity=0.205 Sum_probs=389.1
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
+++++|++++|.+++..+.+|.++++|++|+|++|++. .++...|+++++|++|++++|++++.
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~--------------- 91 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL--------------- 91 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE---------------
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCcc---------------
Confidence 47999999999999888889999999999999999998 67658899999999999999988743
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccc--cCCCCCCCCccEEEcccCcCcccC
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR--LHLPDSKRDLLHLVISNNNFIGTL 162 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~ 162 (659)
.+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++. +.....+++|++|++++|++.+..
T Consensus 92 -----~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 92 -----ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred -----CHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 4567888888999999999888 55554456888999999999888763 333446888999999999888665
Q ss_pred ChhhhhcCCCC----cEEEcccCcccccCChhhcCCCCCCEEeCcCCcCcc-----------------------------
Q 042632 163 PDNFGVILPEL----VYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSG----------------------------- 209 (659)
Q Consensus 163 ~~~~~~~l~~L----~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~----------------------------- 209 (659)
+..+.. +++| ++|++++|.+++..+..+... +|+.|++++|....
T Consensus 166 ~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 166 CTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp GGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred HHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 665554 6677 788999998887666666555 78888888774321
Q ss_pred -ccChhhhhCCC--CCCEEEccCc-cccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCC
Q 042632 210 -ELPKQFLTGCV--SLEFMNLSHN-LFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLP 285 (659)
Q Consensus 210 -~~~~~~~~~l~--~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 285 (659)
.++...+.++. .++.++++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~ 320 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFP 320 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccC
Confidence 12222222222 2455666666 677778888999999999999999998 577888888 9999999999998 555
Q ss_pred hhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcC---CCCCCCCCCcEEEccCCcCCCCCchhhhcC
Q 042632 286 HWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPL---EFSSNHSSLRHLFLHNNSLNGNIPHLINED 362 (659)
Q Consensus 286 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 362 (659)
. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.. .....+++|++|++++|.+.+..+ .+..+
T Consensus 321 ~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l 395 (570)
T 2z63_A 321 T--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGL 395 (570)
T ss_dssp B--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETC
T ss_pred c--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccc-ccccc
Confidence 5 4789999999999998865554 67899999999999998653 223378999999999999985544 48999
Q ss_pred CCCceEecCCCcccccCC-ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccc
Q 042632 363 SNLRALLLRGNNLQGNIP-EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRI 441 (659)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (659)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..
T Consensus 396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------------- 443 (570)
T 2z63_A 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------------------------------- 443 (570)
T ss_dssp TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------------------------------
T ss_pred CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------------------------------
Confidence 999999999999987666 57889999999999999999877777665
Q ss_pred ccccceEeeeccccccccccccccccEEEccCCcCc-ccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECc
Q 042632 442 KSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELT-GDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLS 520 (659)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 520 (659)
+++|+.|++++|+++ +.+|..++.+++|++|+|++|++++..|..|..+++|++|+++
T Consensus 444 ---------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 444 ---------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp ---------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 678999999999998 5789999999999999999999998889999999999999999
Q ss_pred CCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCC
Q 042632 521 YNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQF 558 (659)
Q Consensus 521 ~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 558 (659)
+|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 99999888888999999999999999999998876433
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.3e-48 Score=432.63 Aligned_cols=472 Identities=18% Similarity=0.180 Sum_probs=253.6
Q ss_pred CCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccCc
Q 042632 29 TYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHN 108 (659)
Q Consensus 29 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n 108 (659)
.+++.|+|++|.+.|.+| .+++++++|++|+|++|.+....... + .-.+...+|... +.+|+ +++++|
T Consensus 81 ~~V~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~--~------~~~~~~~~~~~~--~~~l~-l~l~~~ 148 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLF--G------PKGISANMSDEQ--KQKMR-MHYQKT 148 (636)
T ss_dssp CCEEEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSB--S------TTSBCTTCCHHH--HHHHH-THHHHH
T ss_pred CCEEEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccc--c------ccccccCchHHH--HHHHH-hhHHHh
Confidence 467888888888887888 77888888888888888652110000 0 000000122222 23344 555555
Q ss_pred cccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcc--cCcCcccCChhhhhcCCCCcEEEcccCccccc
Q 042632 109 NLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVIS--NNNFIGTLPDNFGVILPELVYLDMSQNSFVGS 186 (659)
Q Consensus 109 ~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 186 (659)
.+.+.+|..+...+..+..+++....+... ....++.+.+. .|++++ +|..+.. +++|++|+|++|.+++.
T Consensus 149 ~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~l~~l~l~~~~n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~ 221 (636)
T 4eco_A 149 FVDYDPREDFSDLIKDCINSDPQQKSIKKS-----SRITLKDTQIGQLSNNITF-VSKAVMR-LTKLRQFYMGNSPFVAE 221 (636)
T ss_dssp HTCCCGGGGSCHHHHHHHHHCTTSCCCCCC-----CCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGG
T ss_pred hhccCchhhHHHHHHHHhhcCccccccccc-----cccchhhhhhccccCCCcc-CCHHHhc-ccCCCEEECcCCccccc
Confidence 555444443322122222222222111110 11112222221 344554 5555543 55666666666665543
Q ss_pred -----------------CChhhc--CCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcc-ccc-cCCcCCCCC--
Q 042632 187 -----------------IPPSTG--YMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNL-FVG-QIFPKYMNL-- 243 (659)
Q Consensus 187 -----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l-- 243 (659)
+|..++ ++++|++|++++|.+.+.+|..+ ..+++|++|++++|+ +++ .+|..+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~ 300 (636)
T 4eco_A 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALAD 300 (636)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhc
Confidence 555555 56666666666666555555443 455666666666665 554 444444443
Q ss_pred ----CCCCEEEccCCCCCccccc--cccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCC
Q 042632 244 ----TQLAWLYLSDNQFTGRLEE--GLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQV 317 (659)
Q Consensus 244 ----~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 317 (659)
++|++|++++|+++ .+|. .+..+++|++|++++|.+++.+| .+..+++|++|++++|.+. .+|..+..+++
T Consensus 301 ~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 301 APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 56666666666665 4555 56666666666666666665555 5555666666666666665 45555555665
Q ss_pred -CcEEEccCCcCcCcCCCCCC--CCCCcEEEccCCcCCCCCchhhh-------cCCCCceEecCCCcccccCCccccCCC
Q 042632 318 -TRILDISGNKLYGPLEFSSN--HSSLRHLFLHNNSLNGNIPHLIN-------EDSNLRALLLRGNNLQGNIPEPLCHLR 387 (659)
Q Consensus 318 -L~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~ 387 (659)
|++|++++|.++........ +++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..++
T Consensus 378 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp TCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred cCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 66666666666533222222 23566666666666665555555 555666666666666633333344566
Q ss_pred CCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccccccc
Q 042632 388 KLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMT 467 (659)
Q Consensus 388 ~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 467 (659)
+|+.|++++|.++ .+|........ .....+++|+
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~~---------------------------------------------~~~~~l~~L~ 491 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDEN---------------------------------------------ENFKNTYLLT 491 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEETT---------------------------------------------EECTTGGGCC
T ss_pred CCCEEECCCCCCC-CcCHHHhcccc---------------------------------------------ccccccCCcc
Confidence 6666666666666 44432211000 0001133566
Q ss_pred EEEccCCcCcccCChhhh--ccccCCEEeCCCCcCcccCCccccccCCCCEEEC------cCCcccccCChhhhcCCCCC
Q 042632 468 GLDLSSNELTGDIPSEIG--LLQELHALNLSHNHFSGSIPRSFSILKMIESMDL------SYNELSGRIPLELSELNYLA 539 (659)
Q Consensus 468 ~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~ 539 (659)
.|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+| ++|.+.+.+|..+..+++|+
T Consensus 492 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~ 569 (636)
T 4eco_A 492 SIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569 (636)
T ss_dssp EEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC
Confidence 6666666666 5555554 66666666666666664 5666666666666666 34555666666666666666
Q ss_pred eEeccCCccccCCCCCCCCCCCCcCccCCCCCCC
Q 042632 540 IFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLC 573 (659)
Q Consensus 540 ~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c 573 (659)
.|++++|++ +.+|.. ..++++.+++++||+.|
T Consensus 570 ~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 570 QLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp EEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred EEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 666666666 344543 22556666666666665
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8e-48 Score=426.17 Aligned_cols=468 Identities=17% Similarity=0.231 Sum_probs=298.4
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCC------cC------CCChhhhcCCCCCCEEEccCcccccccCh
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQL------SG------SLPISVFANLTSLEYLSLSDKKFQGSFSL 72 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 72 (659)
.+++.|+|+++.+.|.+|.+|+++++|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4789999999999999999999999999999999976 22 455222 45566 77777766654332
Q ss_pred hhhccCC-----CCccccccccchhhhhCCCCCCEEEcc--CccccccCchHHhhcCCCCCEEEccCcccccccCCCCCC
Q 042632 73 SVLANHS-----RLEHCNISGTIASFLQYQYDLRYIDLS--HNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSK 145 (659)
Q Consensus 73 ~~~~~l~-----~L~~~~l~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 145 (659)
.....+. ++....+. ......++.+.+. +|.+++ +|..+. ++++|++|++++|.+++........
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hHHHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCcccccccccccc
Confidence 1100000 00000000 0011122222222 467775 776644 7777777777777776610000000
Q ss_pred CCccEEEcccCcCcccCChhhh--hcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCc-Ccc-ccChhhhhCC--
Q 042632 146 RDLLHLVISNNNFIGTLPDNFG--VILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNN-FSG-ELPKQFLTGC-- 219 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~l-- 219 (659)
+ -+.+...+.+|..++ . +++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..+ ..+
T Consensus 229 ~------~~~~~~~~~ip~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~ 300 (636)
T 4eco_A 229 N------ENSEYAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW-QALAD 300 (636)
T ss_dssp C------TTSHHHHHHTTSCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHH
T ss_pred c------cccchhcccCchhhhhcc-cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH-Hhhhc
Confidence 0 000011112444443 3 5555555555555555555555555556666665555 554 455443 222
Q ss_pred ----CCCCEEEccCccccccCCc--CCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCC
Q 042632 220 ----VSLEFMNLSHNLFVGQIFP--KYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSN 293 (659)
Q Consensus 220 ----~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 293 (659)
++|++|++++|+++ .+|. .+.++++|++|++++|.+++.+| .+..+++|++|++++|+++ .+|..+..+++
T Consensus 301 ~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 301 APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 55666666666655 4444 45556666666666666655555 5555566666666666665 55555666666
Q ss_pred -CCEEEccCCcccccCCccCCCCC--CCcEEEccCCcCcCcCCCCC--------CCCCCcEEEccCCcCCCCCchhhhcC
Q 042632 294 -LDVLLMSRNSLEGDVSVPLSNLQ--VTRILDISGNKLYGPLEFSS--------NHSSLRHLFLHNNSLNGNIPHLINED 362 (659)
Q Consensus 294 -L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l 362 (659)
|++|++++|.+. .+|..+.... +|+.|++++|.+.+..+... .+++|++|++++|.++...+..+..+
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 666666666665 4455554433 56666666666655433211 45688888888888884444455668
Q ss_pred CCCceEecCCCcccccCCcc-ccCC-------CCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccccc
Q 042632 363 SNLRALLLRGNNLQGNIPEP-LCHL-------RKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDAS 434 (659)
Q Consensus 363 ~~L~~L~L~~n~l~~~~~~~-~~~l-------~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (659)
++|++|++++|+++ .+|.. +... ++|++|++++|+++ .+|..+..
T Consensus 457 ~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~------------------------- 509 (636)
T 4eco_A 457 SPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA------------------------- 509 (636)
T ss_dssp CCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-------------------------
T ss_pred CCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-------------------------
Confidence 89999999999998 45543 3322 28999999999998 67766541
Q ss_pred CCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeC------CCCcCcccCCccc
Q 042632 435 GRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNL------SHNHFSGSIPRSF 508 (659)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L------s~N~l~~~~p~~~ 508 (659)
..+++|+.|+|++|++++ +|..+..+++|++|+| ++|++.+.+|..+
T Consensus 510 --------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 510 --------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp --------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred --------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 016789999999999996 8888999999999999 5678888999999
Q ss_pred cccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCC
Q 042632 509 SILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 509 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 553 (659)
..+++|++|+|++|++ +.+|..+. ++|+.|++++|++.+..+
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred hcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccH
Confidence 9999999999999999 58888765 799999999999887443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=409.30 Aligned_cols=452 Identities=20% Similarity=0.198 Sum_probs=374.4
Q ss_pred CEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccCcccc
Q 042632 32 RVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSHNNLA 111 (659)
Q Consensus 32 ~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 111 (659)
++|++++|.++ .+| ..+. ++|++|++++|.+++ ..+..+.++++|++|++++|.++
T Consensus 3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~--------------------~~~~~~~~l~~L~~L~Ls~n~l~ 58 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISE--------------------LWTSDILSLSKLRILIISHNRIQ 58 (520)
T ss_dssp CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCC--------------------CCHHHHTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccc--------------------cChhhccccccccEEecCCCccC
Confidence 58999999998 899 4444 899999999998774 35678999999999999999999
Q ss_pred ccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcc-cCChhhhhcCCCCcEEEcccCcccccCChh
Q 042632 112 GTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIG-TLPDNFGVILPELVYLDMSQNSFVGSIPPS 190 (659)
Q Consensus 112 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 190 (659)
+..|.. +.++++|++|++++|.++.++.. .+++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++ ..
T Consensus 59 ~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~ 131 (520)
T 2z7x_B 59 YLDISV-FKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SS 131 (520)
T ss_dssp EEEGGG-GTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GG
T ss_pred CcChHH-hhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhcc-CCcceEEEecCcccch---hh
Confidence 544554 55999999999999999987655 89999999999999986 46777775 9999999999999985 46
Q ss_pred hcCCCCC--CEEeCcCCcC--ccccChhhhhCCC-CCCEEEccCccccccCCc-CCCCCCCCCEEEccCCC-------CC
Q 042632 191 TGYMERL--LFLDLSSNNF--SGELPKQFLTGCV-SLEFMNLSHNLFVGQIFP-KYMNLTQLAWLYLSDNQ-------FT 257 (659)
Q Consensus 191 ~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~-------i~ 257 (659)
+..+++| ++|++++|.+ .+..|..+ ..+. ....+++++|.+.+..+. .+.++++|+.|++++|. +.
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccceeeEEEeecccccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceee
Confidence 7778888 9999999999 65666543 3433 234678888887765444 57789999999999997 56
Q ss_pred ccccccccCCCCCcEEEeecccccCCCChhhh---CCCCCCEEEccCCcccccCCccC-----CCCCCCcEEEccCCcCc
Q 042632 258 GRLEEGLLNAPSLYILDVSNNMLSGQLPHWAG---NFSNLDVLLMSRNSLEGDVSVPL-----SNLQVTRILDISGNKLY 329 (659)
Q Consensus 258 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~ 329 (659)
+.++ .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+.+|..+ ..++.|+.+++++|.+
T Consensus 211 ~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 211 SILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred cchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence 5555 788999999999999988754322221 24689999999999998888888 8999999999999998
Q ss_pred CcCCC--CC---CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc--c
Q 042632 330 GPLEF--SS---NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG--S 402 (659)
Q Consensus 330 ~~~~~--~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~ 402 (659)
..+. .. ...+|+.|++++|.+.... .+..+++|++|++++|++++..|..+..+++|++|++++|++++ .
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 2221 11 1257999999999987432 12688999999999999998889999999999999999999985 4
Q ss_pred cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCCh
Q 042632 403 IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPS 482 (659)
Q Consensus 403 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 482 (659)
+|..+.. +++|+.|++++|++++.+|.
T Consensus 366 ~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~l~~ 392 (520)
T 2z7x_B 366 IAEMTTQ-----------------------------------------------------MKSLQQLDISQNSVSYDEKK 392 (520)
T ss_dssp HHHHHTT-----------------------------------------------------CTTCCEEECCSSCCBCCGGG
T ss_pred chHHHhh-----------------------------------------------------CCCCCEEECCCCcCCccccc
Confidence 4455544 67899999999999985665
Q ss_pred -hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCC-CCCCCC
Q 042632 483 -EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPN-SRQFAN 560 (659)
Q Consensus 483 -~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~ 560 (659)
.+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. ...++.
T Consensus 393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 488899999999999999988887765 79999999999999 8898888999999999999999975444 366788
Q ss_pred CCcCccCCCCCCCCCC
Q 042632 561 FDENNYRGNPLLCGPP 576 (659)
Q Consensus 561 l~~~~~~~N~~~c~~~ 576 (659)
++.+++++||+.|+|+
T Consensus 470 L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred ccEEECcCCCCcccCC
Confidence 9999999999999764
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-45 Score=408.98 Aligned_cols=491 Identities=19% Similarity=0.156 Sum_probs=307.0
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccc
Q 042632 6 NLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCN 85 (659)
Q Consensus 6 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~ 85 (659)
++++|||++|+|++..+.+|.++++|++|+|++|+|+ .++.++|.++++|++|+|++|++++.
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l---------------- 115 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL---------------- 115 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE----------------
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC----------------
Confidence 6788888888888666777888888888888888887 67667788888888888888776632
Q ss_pred ccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccccc--CCCCCCCCccEEEcccCcCcccCC
Q 042632 86 ISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL--HLPDSKRDLLHLVISNNNFIGTLP 163 (659)
Q Consensus 86 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~ 163 (659)
.+.+|.++++|++|++++|.++ .++...++++++|++|++++|.++... .....+++|++|++++|++.+..+
T Consensus 116 ----~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 116 ----ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp ----CGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ----CHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 4456777888888888888887 566555567888888888888876542 223367788888888888776555
Q ss_pred hhhhhcCCC----CcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccc------c
Q 042632 164 DNFGVILPE----LVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLF------V 233 (659)
Q Consensus 164 ~~~~~~l~~----L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i------~ 233 (659)
..+.. +.+ ...++++.|.+....+ .......++.+++.+|.....++...+..+..++...+..+.. .
T Consensus 191 ~~l~~-L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 191 TDLRV-LHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp GGGHH-HHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ccccc-hhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 55432 332 3467777777774333 3334445667777777655445555556666666655543221 1
Q ss_pred ccCCcCCCCCCCCCEEEccCCCCCc---cccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCc
Q 042632 234 GQIFPKYMNLTQLAWLYLSDNQFTG---RLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSV 310 (659)
Q Consensus 234 ~~~~~~~~~l~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 310 (659)
......+.....+....+..+.... .....+....+++.+++.++.+... ..+.....++.|++.+|.+....+.
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc
Confidence 1111222223333333332222111 1112223334444555444444321 1233334445555554444322221
Q ss_pred -------------------cCCCCCCCcEEEccCCcCcCcCCCC---CCCCCCcEEEccCCcCCCCCchhhhcCCCCceE
Q 042632 311 -------------------PLSNLQVTRILDISGNKLYGPLEFS---SNHSSLRHLFLHNNSLNGNIPHLINEDSNLRAL 368 (659)
Q Consensus 311 -------------------~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 368 (659)
....+++|+.+++++|.+....... ....+|+.+++..+... ..+..+..+++|+.+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHL 425 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEE
T ss_pred cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccch
Confidence 2223444455555554443211111 13344445554444443 222334444555555
Q ss_pred ecCCCcccccCC-ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccce
Q 042632 369 LLRGNNLQGNIP-EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRN 447 (659)
Q Consensus 369 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (659)
++.++......+ ..+..+++++.+++++|.+.+..+..+.
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~--------------------------------------- 466 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN--------------------------------------- 466 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT---------------------------------------
T ss_pred hhhhccccccccccccccccccccccccccccccccccccc---------------------------------------
Confidence 555444432222 2344445555555555555443333332
Q ss_pred EeeeccccccccccccccccEEEccCCcCc-ccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 448 KFMAKNRYESYKGDVLNYMTGLDLSSNELT-GDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 448 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
.++.++.|++++|++. +..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++
T Consensus 467 --------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 467 --------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp --------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred --------------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 2678999999999854 4678889999999999999999999999999999999999999999998
Q ss_pred cCChhhhcCCCCCeEeccCCccccCCCCC-CCC-CCCCcCccCCCCCCCCCC
Q 042632 527 RIPLELSELNYLAIFNVSYNDLLGPVPNS-RQF-ANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 527 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~-~~l~~~~~~~N~~~c~~~ 576 (659)
..|..|..+++|++|++++|++++.+|.. ..+ .+++.+++++|||.|+|.
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 88999999999999999999999988876 344 678899999999999764
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-45 Score=411.38 Aligned_cols=473 Identities=17% Similarity=0.202 Sum_probs=341.0
Q ss_pred CCCCEEECCCCCCcCCCChhhhcCCCCCCEEEc-cCcccccccChhhhccCCC--------------------Ccccccc
Q 042632 29 TYLRVLNLSSNQLSGSLPISVFANLTSLEYLSL-SDKKFQGSFSLSVLANHSR--------------------LEHCNIS 87 (659)
Q Consensus 29 ~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~~l~~--------------------L~~~~l~ 87 (659)
.+++.|+|++|.+.|.+| ..++++++|++|+| ++|.+.|..+......... .....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 467788888888887788 77888888888888 7777765532211000000 0011111
Q ss_pred ccchhhhh-----------CCCCCCEEEccC--ccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcc
Q 042632 88 GTIASFLQ-----------YQYDLRYIDLSH--NNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVIS 154 (659)
Q Consensus 88 ~~~~~~l~-----------~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~ 154 (659)
...+..+. ....++.+.+.. |.+++ +|..+. ++++|++|+|++|.+++..-.... +..+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~------~~~s 473 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDW------EDAN 473 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSC------SCTT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccc------cccc
Confidence 11111111 122333344433 77775 777654 788888888888887762000000 0112
Q ss_pred cCcCcccCChhhh-hcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCc-Ccc-ccChhhh------hCCCCCCEE
Q 042632 155 NNNFIGTLPDNFG-VILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNN-FSG-ELPKQFL------TGCVSLEFM 225 (659)
Q Consensus 155 ~n~l~~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~------~~l~~L~~L 225 (659)
.|...+.+|..+. ..+++|++|+|++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. ..+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 2344455777763 238888888888888887888888888888888888887 776 6776541 234588888
Q ss_pred EccCccccccCCc--CCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCC-CCEEEccCC
Q 042632 226 NLSHNLFVGQIFP--KYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSN-LDVLLMSRN 302 (659)
Q Consensus 226 ~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n 302 (659)
++++|++. .+|. .+.++++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 88888888 6666 7888888888888888888 666 7888888899999988888 77888888888 999999999
Q ss_pred cccccCCccCCCCCC--CcEEEccCCcCcCcCCCCC------CCCCCcEEEccCCcCCCCCchh-hhcCCCCceEecCCC
Q 042632 303 SLEGDVSVPLSNLQV--TRILDISGNKLYGPLEFSS------NHSSLRHLFLHNNSLNGNIPHL-INEDSNLRALLLRGN 373 (659)
Q Consensus 303 ~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~------~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~n 373 (659)
.+. .+|..+..++. |+.|++++|.+.+..+... .+++|+.|++++|.++ .+|.. +..+++|+.|++++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 888 66777766654 8999999999887655332 4568999999999999 45554 458899999999999
Q ss_pred cccccCCccccCC--------CCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccccccc
Q 042632 374 NLQGNIPEPLCHL--------RKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTS 445 (659)
Q Consensus 374 ~l~~~~~~~~~~l--------~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (659)
+++ .+|..+... ++|+.|+|++|+++ .+|..+..
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------ 749 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------ 749 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------
Confidence 998 556544332 38999999999998 67766541
Q ss_pred ceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCC------CcCcccCCccccccCCCCEEEC
Q 042632 446 RNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSH------NHFSGSIPRSFSILKMIESMDL 519 (659)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~L 519 (659)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|..+++|+.|+|
T Consensus 750 ---------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 750 ---------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp ---------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred ---------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 016789999999999996 788999999999999976 8888899999999999999999
Q ss_pred cCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCC
Q 042632 520 SYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLC 573 (659)
Q Consensus 520 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c 573 (659)
++|++ +.+|..+. ++|+.|++++|++....+.. ..........+.+|+..+
T Consensus 814 s~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 814 GSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 99999 68888765 69999999999998754432 111223445566776654
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-45 Score=402.28 Aligned_cols=462 Identities=18% Similarity=0.206 Sum_probs=381.0
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
++|++|+|++|++++..|.+|.++++|++|++++|++. .++.++|.++++|++|++++|.+++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~---------------- 88 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSS---------------- 88 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCS----------------
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCc----------------
Confidence 58999999999999888899999999999999999998 5555889999999999999998774
Q ss_pred cccccchhhhhCCCCCCEEEccCcccccc-CchHHhhcCCCCCEEEccCcc-cccccC-CCCCCCCccEEEcccCcCccc
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGT-IPTWLLQNNTKLEILFLFNNF-LTGRLH-LPDSKRDLLHLVISNNNFIGT 161 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~~~~~L~~L~l~~n~l~~~ 161 (659)
..+..++.+++|++|++++|.+++. .|.. +.++++|++|++++|. +...+. ....+++|++|++++|.+.+.
T Consensus 89 ----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 89 ----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp ----CCHHHHTTCTTCCEEECTTCCCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred ----cCHHHhccCCCCcEEECCCCcccccchhhh-hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 3566789999999999999999842 3443 4589999999999998 454432 345789999999999999988
Q ss_pred CChhhhhcCCCCcEEEcccCcccccCChh-hcCCCCCCEEeCcCCcCcccc--ChhhhhCCCCCCEEEccCccccccCC-
Q 042632 162 LPDNFGVILPELVYLDMSQNSFVGSIPPS-TGYMERLLFLDLSSNNFSGEL--PKQFLTGCVSLEFMNLSHNLFVGQIF- 237 (659)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~- 237 (659)
.|..+.. +++|++|++++|.+. ..|.. +..+++|++|++++|.+.+.. |..+...+++|+.|++++|.+.+..+
T Consensus 164 ~~~~l~~-l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 164 QSQSLKS-IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp CTTTTTT-CSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred Chhhhhc-cccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 8888875 899999999999987 44444 457999999999999998421 33334567899999999999876433
Q ss_pred ---cCCCCCCCCCEEEccCCCCCccc------cccccCCCCCcEEEeecccccCC-----CChhhhCCCCCCEEEccCCc
Q 042632 238 ---PKYMNLTQLAWLYLSDNQFTGRL------EEGLLNAPSLYILDVSNNMLSGQ-----LPHWAGNFSNLDVLLMSRNS 303 (659)
Q Consensus 238 ---~~~~~l~~L~~L~l~~n~i~~~~------~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~ 303 (659)
..+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+... .+..+...++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 33466789999999999876431 23456788999999999877532 23334556789999999999
Q ss_pred ccccCCccC-CCCCCCcEEEccCCcCcCcCC----CCCCCCCCcEEEccCCcCCCCCc--hhhhcCCCCceEecCCCccc
Q 042632 304 LEGDVSVPL-SNLQVTRILDISGNKLYGPLE----FSSNHSSLRHLFLHNNSLNGNIP--HLINEDSNLRALLLRGNNLQ 376 (659)
Q Consensus 304 l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~----~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~ 376 (659)
+. .+|..+ ..+++|++|++++|.+.+..+ ....+++|++|++++|++++..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 87 555554 578999999999999987532 23478999999999999985432 46889999999999999999
Q ss_pred ccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccc
Q 042632 377 GNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYE 456 (659)
Q Consensus 377 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (659)
.+|..+..+++|++|++++|+++ .+|..+
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------------------------------------------- 429 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------------------------------------------- 429 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-------------------------------------------------
T ss_pred -cCChhhcccccccEEECCCCCcc-cccchh-------------------------------------------------
Confidence 67888999999999999999987 333321
Q ss_pred cccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCC
Q 042632 457 SYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELN 536 (659)
Q Consensus 457 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 536 (659)
+++|+.||+++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|+|++|++++..|+.+..++
T Consensus 430 ------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 497 (549)
T 2z81_A 430 ------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT 497 (549)
T ss_dssp ------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred ------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence 357999999999999643 57899999999999999 6776 57899999999999999998898999999
Q ss_pred CCCeEeccCCccccCCCC
Q 042632 537 YLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 537 ~L~~L~l~~N~l~~~~p~ 554 (659)
+|+.|++++|+++|.+|.
T Consensus 498 ~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 498 SLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TCCEEECCSSCBCCCHHH
T ss_pred ccCEEEecCCCccCCCcc
Confidence 999999999999998774
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-45 Score=412.26 Aligned_cols=369 Identities=18% Similarity=0.199 Sum_probs=310.1
Q ss_pred CccEEEccc--CcCcccCChhhhhcCCCCcEEEcccCcccc-----------------cCChhhc--CCCCCCEEeCcCC
Q 042632 147 DLLHLVISN--NNFIGTLPDNFGVILPELVYLDMSQNSFVG-----------------SIPPSTG--YMERLLFLDLSSN 205 (659)
Q Consensus 147 ~L~~L~l~~--n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n 205 (659)
.++.+.+.. |++++ +|..+.. +++|++|+|++|.+++ .+|..++ .+++|++|++++|
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred chhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 344444443 78887 8988876 9999999999999997 3898887 9999999999999
Q ss_pred cCccccChhhhhCCCCCCEEEccCcc-ccc-cCCcCC-------CCCCCCCEEEccCCCCCccccc--cccCCCCCcEEE
Q 042632 206 NFSGELPKQFLTGCVSLEFMNLSHNL-FVG-QIFPKY-------MNLTQLAWLYLSDNQFTGRLEE--GLLNAPSLYILD 274 (659)
Q Consensus 206 ~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~-------~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~ 274 (659)
.+.+.+|..+ ..+++|+.|++++|+ +++ .+|..+ ..+++|++|++++|.++ .+|. .+..+++|+.|+
T Consensus 502 ~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 502 PNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579 (876)
T ss_dssp TTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred CCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence 9988999765 799999999999998 887 666544 45569999999999999 7787 899999999999
Q ss_pred eecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCC-CcEEEccCCcCcCcCCCCCCC--CCCcEEEccCCcC
Q 042632 275 VSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQV-TRILDISGNKLYGPLEFSSNH--SSLRHLFLHNNSL 351 (659)
Q Consensus 275 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~l 351 (659)
+++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+.......... ++|+.|++++|.+
T Consensus 580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcC
Confidence 9999999 778 8999999999999999999 78888999999 999999999998544333333 4599999999999
Q ss_pred CCCCchh---hh--cCCCCceEecCCCcccccCCcc-ccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 352 NGNIPHL---IN--EDSNLRALLLRGNNLQGNIPEP-LCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 352 ~~~~~~~---~~--~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
.+.+|.. +. .+++|++|++++|.++ .+|.. +..+++|+.|+|++|+++ .+|..+.....
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~------------- 721 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD------------- 721 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-------------
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-------------
Confidence 8766532 22 3458999999999999 55654 458999999999999998 66654432100
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhh--ccccCCEEeCCCCcCccc
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIG--LLQELHALNLSHNHFSGS 503 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~ 503 (659)
-....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++
T Consensus 722 --------------------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~- 767 (876)
T 4ecn_A 722 --------------------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS- 767 (876)
T ss_dssp --------------------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-
T ss_pred --------------------------------ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-
Confidence 00012558999999999999 7888887 99999999999999996
Q ss_pred CCccccccCCCCEEECcC------CcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCC
Q 042632 504 IPRSFSILKMIESMDLSY------NELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLC 573 (659)
Q Consensus 504 ~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c 573 (659)
+|..+..+++|+.|+|++ |.+.+.+|..+.++++|+.|++++|++ +.+|.. ..++++.+++++||+..
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 799999999999999977 888899999999999999999999999 667776 33689999999999865
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-44 Score=396.56 Aligned_cols=457 Identities=19% Similarity=0.201 Sum_probs=349.1
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
...+++|+++|+++ .+|..+. ++|++|++++|.+. .++...|.++++|++|++++|++++.
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~--------------- 91 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSL--------------- 91 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEE---------------
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcC---------------
Confidence 34578999999998 4776664 79999999999998 67668899999999999999887743
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCccccccc--CCCCCCCCccEEEcccCcCcccC
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL--HLPDSKRDLLHLVISNNNFIGTL 162 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~ 162 (659)
.|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++.+ .....+++|++|++++|++.+.
T Consensus 92 -----~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~- 161 (562)
T 3a79_B 92 -----DFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL- 161 (562)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-
T ss_pred -----CHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-
Confidence 5677888999999999999998 78775 7899999999999998754 2344788999999999988753
Q ss_pred ChhhhhcCCCC--cEEEcccCcc--cccCChhhcCCC-CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccc-----
Q 042632 163 PDNFGVILPEL--VYLDMSQNSF--VGSIPPSTGYME-RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLF----- 232 (659)
Q Consensus 163 ~~~~~~~l~~L--~~L~L~~n~i--~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i----- 232 (659)
.+. .+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|+.
T Consensus 162 --~~~-~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l 238 (562)
T 3a79_B 162 --DLL-PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRL 238 (562)
T ss_dssp --TTG-GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHH
T ss_pred --chh-hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchH
Confidence 222 25555 9999999988 777777777654 1225678888888777777677888999999998852
Q ss_pred cccCCcCCCCCCCCCEEEccCCCCCccc----cccccCCCCCcEEEeecccccCCCChhh-----hCCCCCCEEEccCCc
Q 042632 233 VGQIFPKYMNLTQLAWLYLSDNQFTGRL----EEGLLNAPSLYILDVSNNMLSGQLPHWA-----GNFSNLDVLLMSRNS 303 (659)
Q Consensus 233 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~ 303 (659)
.+ ....+..+++|+.+++.++.+.+.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.+++..+.
T Consensus 239 ~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 239 MT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 21 1234667788888888877765421 1222 24589999999999988888776 555666666666665
Q ss_pred ccccCC-ccCC---CCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCccccc-
Q 042632 304 LEGDVS-VPLS---NLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGN- 378 (659)
Q Consensus 304 l~~~~~-~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~- 378 (659)
+ ..| ..+. ...+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|++|++++|++++.
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc
Confidence 5 222 1111 1256899999999885432 224778899999999999988888889999999999999999853
Q ss_pred -CCccccCCCCCcEEEccCCcCCcccchh-hccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccc
Q 042632 379 -IPEPLCHLRKLSIVDISCNNLNGSIPSC-FTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYE 456 (659)
Q Consensus 379 -~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (659)
.|..+..+++|++|++++|.+++.+|.. +..
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~----------------------------------------------- 426 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW----------------------------------------------- 426 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-----------------------------------------------
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcC-----------------------------------------------
Confidence 3456888999999999999998755543 322
Q ss_pred cccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChh-hhcC
Q 042632 457 SYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLE-LSEL 535 (659)
Q Consensus 457 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l 535 (659)
+++|+.|++++|++++..|..+. ++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+
T Consensus 427 ------l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 427 ------AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp ------CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred ------cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 67899999999999877766554 68999999999998 67777779999999999999998 56655 8889
Q ss_pred CCCCeEeccCCccccCCCCC
Q 042632 536 NYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 536 ~~L~~L~l~~N~l~~~~p~~ 555 (659)
++|+.|++++|++.|.+|..
T Consensus 497 ~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTCCCEECCSCCBCCCHHHH
T ss_pred CCCCEEEecCCCcCCCcchH
Confidence 99999999999999876643
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-43 Score=385.22 Aligned_cols=457 Identities=18% Similarity=0.192 Sum_probs=358.7
Q ss_pred CCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEcc
Q 042632 27 NLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLS 106 (659)
Q Consensus 27 ~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls 106 (659)
.+...+++++++|.++ .+| ..+. ++|++|++++|.+++ ..+..|.++++|++|+++
T Consensus 29 ~~~~~~~l~ls~~~L~-~ip-~~~~--~~L~~L~Ls~N~i~~--------------------~~~~~~~~l~~L~~L~Ls 84 (562)
T 3a79_B 29 SNELESMVDYSNRNLT-HVP-KDLP--PRTKALSLSQNSISE--------------------LRMPDISFLSELRVLRLS 84 (562)
T ss_dssp ----CCEEECTTSCCC-SCC-TTSC--TTCCEEECCSSCCCC--------------------CCGGGTTTCTTCCEEECC
T ss_pred ccCCCcEEEcCCCCCc-cCC-CCCC--CCcCEEECCCCCccc--------------------cChhhhccCCCccEEECC
Confidence 4556699999999998 799 4343 899999999998874 356789999999999999
Q ss_pred CccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcc-cCChhhhhcCCCCcEEEcccCcccc
Q 042632 107 HNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIG-TLPDNFGVILPELVYLDMSQNSFVG 185 (659)
Q Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~i~~ 185 (659)
+|.+++..|. .+.++++|++|++++|.++.++.. .+++|++|++++|++.+ .+|..+.. +++|++|++++|.+++
T Consensus 85 ~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 85 HNRIRSLDFH-VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCCCEECTT-TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCT
T ss_pred CCCCCcCCHH-HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCcccc
Confidence 9999944444 456899999999999999987655 89999999999999985 34566665 9999999999999885
Q ss_pred cCChhhcCCCCC--CEEeCcCCcC--ccccChhhhhCCC-CCCEEEccCccccccCCc-CCCCCCCCCEEEccCCCCC--
Q 042632 186 SIPPSTGYMERL--LFLDLSSNNF--SGELPKQFLTGCV-SLEFMNLSHNLFVGQIFP-KYMNLTQLAWLYLSDNQFT-- 257 (659)
Q Consensus 186 ~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~-- 257 (659)
. .+..+++| ++|++++|.+ ++..|..+ ..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|+..
T Consensus 161 ~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 161 L---DLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp T---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred C---chhhhhhceeeEEEeecccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 3 45555666 9999999999 75566543 3333 122567788887764443 3567889999999998522
Q ss_pred --ccccccccCCCCCcEEEeecccccCCC----ChhhhCCCCCCEEEccCCcccccCCccC-----CCCCCCcEEEccCC
Q 042632 258 --GRLEEGLLNAPSLYILDVSNNMLSGQL----PHWAGNFSNLDVLLMSRNSLEGDVSVPL-----SNLQVTRILDISGN 326 (659)
Q Consensus 258 --~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n 326 (659)
......+..+++|+.++++++.+.+.. +.. ...++|++|++++|.+.+.+|..+ ..++.|+.++++.+
T Consensus 237 ~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 122345778899999999988776421 122 234589999999999998888776 66777777777777
Q ss_pred cCcCcCCCC--C---CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc
Q 042632 327 KLYGPLEFS--S---NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG 401 (659)
Q Consensus 327 ~l~~~~~~~--~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 401 (659)
.+ ..+.. . ...+|++|++++|.+.... ....+++|++|++++|++++..|..+..+++|++|++++|++++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 66 12210 0 2357999999999986432 12678999999999999998889999999999999999999985
Q ss_pred c--cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc
Q 042632 402 S--IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD 479 (659)
Q Consensus 402 ~--~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 479 (659)
. +|..+.+ +++|+.|++++|++++.
T Consensus 392 ~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 392 FFKVALMTKN-----------------------------------------------------MSSLETLDVSLNSLNSH 418 (562)
T ss_dssp TTHHHHTTTT-----------------------------------------------------CTTCCEEECTTSCCBSC
T ss_pred cccchhhhcC-----------------------------------------------------CCCCCEEECCCCcCCCc
Confidence 3 2344443 67899999999999984
Q ss_pred CCh-hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCC-CCC
Q 042632 480 IPS-EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPN-SRQ 557 (659)
Q Consensus 480 ~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~-~~~ 557 (659)
+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++.++. ...
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 554 588999999999999999988777664 79999999999999 7888888999999999999999975554 467
Q ss_pred CCCCCcCccCCCCCCCCCC
Q 042632 558 FANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 558 ~~~l~~~~~~~N~~~c~~~ 576 (659)
++.++.+++++||+.|+++
T Consensus 496 l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CTTCCCEECCSCCBCCCHH
T ss_pred CCCCCEEEecCCCcCCCcc
Confidence 8889999999999999764
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-41 Score=376.08 Aligned_cols=468 Identities=20% Similarity=0.161 Sum_probs=340.2
Q ss_pred CCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCC
Q 042632 1 ICELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSR 80 (659)
Q Consensus 1 i~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 80 (659)
|.++++|++|||++|+|+++.|.+|.++++|++|+|++|+++ .+|.+.|.++++|++|++++|++++.
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l----------- 139 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL----------- 139 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCS-----------
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCC-----------
Confidence 568999999999999999888889999999999999999998 88878999999999999999998753
Q ss_pred CccccccccchhhhhCCCCCCEEEccCcccccc-CchHHhhcCCCCCEEEccCcccccccCCCC-----CCCCccEEEcc
Q 042632 81 LEHCNISGTIASFLQYQYDLRYIDLSHNNLAGT-IPTWLLQNNTKLEILFLFNNFLTGRLHLPD-----SKRDLLHLVIS 154 (659)
Q Consensus 81 L~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~~~L~~L~l~ 154 (659)
.+..|+++++|++|++++|.+++. +|. .+..+++|++|++++|++++...... .......++++
T Consensus 140 ---------~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 140 ---------ENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ---------TTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ---------ChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 223455555555555555555422 222 23355555555555555554321111 11122344455
Q ss_pred cCcCcccCChhhhhcCCCCcEEEcccCccc-------------------------------ccCChhhcCCCCCCEEeCc
Q 042632 155 NNNFIGTLPDNFGVILPELVYLDMSQNSFV-------------------------------GSIPPSTGYMERLLFLDLS 203 (659)
Q Consensus 155 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-------------------------------~~~~~~~~~l~~L~~L~L~ 203 (659)
.|.+.. ++...+. ...++.+++.+|... ......+..+..+....+.
T Consensus 210 ~n~l~~-i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 210 LNPMNF-IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp TCCCCE-ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cCcccc-cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 554442 2222221 223344444443221 1111222233333333333
Q ss_pred CCcCcc---ccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccc
Q 042632 204 SNNFSG---ELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNML 280 (659)
Q Consensus 204 ~n~l~~---~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 280 (659)
.+.... .++. .+..+.+++.+++.++.+.... .+.....++.|++.+|.+....+ ..++.|+.+++..|..
T Consensus 288 ~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 288 LAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred hhhhcccccchhh-hhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 222210 1111 2345677888888888776543 35566788999999988775433 3467788999998887
Q ss_pred cCCCChhhhCCCCCCEEEccCCcccc--cCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCc-h
Q 042632 281 SGQLPHWAGNFSNLDVLLMSRNSLEG--DVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIP-H 357 (659)
Q Consensus 281 ~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~ 357 (659)
... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+...........+++|+.++++++......+ .
T Consensus 362 ~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 362 GNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC
T ss_pred CCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc
Confidence 643 234568999999999998863 34455667889999999999988777767789999999999887765443 4
Q ss_pred hhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc-ccchhhccccccccccCCCCCceeeccccccccCC
Q 042632 358 LINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG-SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGR 436 (659)
Q Consensus 358 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (659)
.+..+++++.++++.|.+.+..+..+..+++|+.|++++|++.+ ..|..|..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------------------------- 492 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------------------- 492 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh---------------------------
Confidence 67889999999999999998889999999999999999998543 45555544
Q ss_pred cccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCE
Q 042632 437 RLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIES 516 (659)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 516 (659)
+++|++|||++|++++..|..|+.+++|++|+|++|++++..|..|..+++|++
T Consensus 493 --------------------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 493 --------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp --------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred --------------------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 678999999999999999999999999999999999999888999999999999
Q ss_pred EECcCCcccccCChhhhcC-CCCCeEeccCCccccCCC
Q 042632 517 MDLSYNELSGRIPLELSEL-NYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 517 L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p 553 (659)
|||++|++++..|+.+..+ ++|++|++++|++.|.+.
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999998 689999999999999754
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-41 Score=358.97 Aligned_cols=353 Identities=21% Similarity=0.248 Sum_probs=165.7
Q ss_pred CCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEE
Q 042632 171 PELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLY 250 (659)
Q Consensus 171 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 250 (659)
++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+.++++|++|++++|++.+..+..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 34444555554444444444444555555555555444344433344445555555555555444444445555555555
Q ss_pred ccCCCCCcccccc--ccCCCCCcEEEeecccccCCCChh-hhCCCCCCEEEccCCcccccCCccCCCC--CCCcEEEccC
Q 042632 251 LSDNQFTGRLEEG--LLNAPSLYILDVSNNMLSGQLPHW-AGNFSNLDVLLMSRNSLEGDVSVPLSNL--QVTRILDISG 325 (659)
Q Consensus 251 l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~l~~ 325 (659)
+++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ ..++.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 5555544322222 444455555555555554443433 4445555555555555544444444333 3445555555
Q ss_pred CcCcCcCCCC---------CCCCCCcEEEccCCcCCCCCchhhhcC---CCCceEecCCCcccccC----------Cccc
Q 042632 326 NKLYGPLEFS---------SNHSSLRHLFLHNNSLNGNIPHLINED---SNLRALLLRGNNLQGNI----------PEPL 383 (659)
Q Consensus 326 n~l~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~----------~~~~ 383 (659)
|.+.+..+.. ..+++|++|++++|.+++..|..+... ++|+.|++++|.+.+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 5544332221 123445555555555544444443322 44555555544332211 0011
Q ss_pred c--CCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccc
Q 042632 384 C--HLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGD 461 (659)
Q Consensus 384 ~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (659)
. ..++|+.|++++|.+++..|..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------------------- 297 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSH---------------------------------------------------- 297 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTT----------------------------------------------------
T ss_pred ccccccCceEEEecCccccccchhhccc----------------------------------------------------
Confidence 1 1234555555555555444444333
Q ss_pred ccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeE
Q 042632 462 VLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIF 541 (659)
Q Consensus 462 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 541 (659)
+++|+.|++++|++++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|++++|.+++..|..+..+++|++|
T Consensus 298 -l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 298 -FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp -CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred -CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 3345555555555554444455555555555555555554444555555555555555555554445555555555555
Q ss_pred eccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 542 NVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 542 ~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
++++|++++.++.. ..+++++.+++++||+.|++|
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 55555555433322 344445555555555555443
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.6e-42 Score=363.39 Aligned_cols=415 Identities=23% Similarity=0.265 Sum_probs=234.5
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHC 84 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~ 84 (659)
++|++|++++|.+ +.+|++|+++++|++|++++|.+.|.+| ..++++++|+++++++|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------------ 70 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------------ 70 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------------
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------------
Confidence 4455555555555 3455555555555555555555554455 4444444443333332210
Q ss_pred cccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCCh
Q 042632 85 NISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPD 164 (659)
Q Consensus 85 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 164 (659)
.++++|++++|.++ .+|. ..++|++|++++|.+++++ ...++|++|++++|++.+ ++.
T Consensus 71 -------------~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~lp---~~~~~L~~L~l~~n~l~~-l~~ 128 (454)
T 1jl5_A 71 -------------RQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELP---ELPQSLKSLLVDNNNLKA-LSD 128 (454)
T ss_dssp -------------HTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC-CCS
T ss_pred -------------cCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCccc---cccCCCcEEECCCCccCc-ccC
Confidence 24678888888877 5554 2367888888888777643 234678888888887763 332
Q ss_pred hhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCC
Q 042632 165 NFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLT 244 (659)
Q Consensus 165 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 244 (659)
. .++|++|++++|.+++ +| .++.+++|++|++++|+++ .+|.. ..+|++|++++|++.+ .| .+.+++
T Consensus 129 ~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~ 195 (454)
T 1jl5_A 129 L----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLP 195 (454)
T ss_dssp C----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred C----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCC
Confidence 1 2578888888888874 66 5888888888888888887 56643 3578888888888876 33 578888
Q ss_pred CCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEcc
Q 042632 245 QLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDIS 324 (659)
Q Consensus 245 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 324 (659)
+|++|++++|.+++ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++.+ +|. ..++|+.|+++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~ 265 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVR 265 (454)
T ss_dssp TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECC
T ss_pred CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECC
Confidence 88888888888875 3332 257888888888887 5563 7778888888888888774 332 23678888888
Q ss_pred CCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCC-CCCcEEEccCCcCCccc
Q 042632 325 GNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHL-RKLSIVDISCNNLNGSI 403 (659)
Q Consensus 325 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~ 403 (659)
+|.+.+... .+++|++|++++|.+++ +|. ..++|++|++++|++++. + .+ ++|++|++++|++++ +
T Consensus 266 ~N~l~~l~~---~~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-l 332 (454)
T 1jl5_A 266 DNYLTDLPE---LPQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-L 332 (454)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-C
T ss_pred CCcccccCc---ccCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-c
Confidence 888776332 24678888888888774 221 125788888888887742 2 22 478888888888774 3
Q ss_pred chhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChh
Q 042632 404 PSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSE 483 (659)
Q Consensus 404 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 483 (659)
|.. +++|+.|++++|+++ .+|.
T Consensus 333 p~~--------------------------------------------------------~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 333 PAL--------------------------------------------------------PPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp CCC--------------------------------------------------------CTTCCEEECCSSCCS-CCCC-
T ss_pred ccc--------------------------------------------------------CCcCCEEECCCCccc-cccc-
Confidence 432 356788888888887 4555
Q ss_pred hhccccCCEEeCCCCcCcc--cCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc--CCCCCCCCC
Q 042632 484 IGLLQELHALNLSHNHFSG--SIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG--PVPNSRQFA 559 (659)
Q Consensus 484 l~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~--~~p~~~~~~ 559 (659)
.+++|++|++++|++++ .+|.++..+ +.|.+.+.+|.. +++|+.|++++|++++ .+|.
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~----- 416 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE----- 416 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC--------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh-----
Confidence 46788888888888886 556555432 346666666653 4789999999999988 4443
Q ss_pred CCCcCccCCCCCCC
Q 042632 560 NFDENNYRGNPLLC 573 (659)
Q Consensus 560 ~l~~~~~~~N~~~c 573 (659)
++..+.+.+|...|
T Consensus 417 sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 417 SVEDLRMNSERVVD 430 (454)
T ss_dssp --------------
T ss_pred hHhheeCcCcccCC
Confidence 35556666666555
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-40 Score=355.93 Aligned_cols=385 Identities=19% Similarity=0.156 Sum_probs=265.4
Q ss_pred CEEEccCccccccCchHHhhcCCCCCEEEccCccccccc-CCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcc
Q 042632 101 RYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRL-HLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMS 179 (659)
Q Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 179 (659)
+.++.+++.++ .+|. -.++|++|++++|.+++.. .....+++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35566666665 5554 1256666666666666542 2233556666666666666545544433346677777777
Q ss_pred cCcccccCChhhcCCCCCCEEeCcCCcCccccCh-hhhhCCCCCCEEEccCccccccCCcC-CCCCCCCCEEEccCCCCC
Q 042632 180 QNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPK-QFLTGCVSLEFMNLSHNLFVGQIFPK-YMNLTQLAWLYLSDNQFT 257 (659)
Q Consensus 180 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~n~i~ 257 (659)
+|.+++..|..++.+++|++|++++|.+++.++. ..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 7776666666667777777777777766643332 22456666777777777666655544 566666777777666666
Q ss_pred ccccccccCC--CCCcEEEeecccccCCCChhh--------hCCCCCCEEEccCCcccccCCccCCC---CCCCcEEEcc
Q 042632 258 GRLEEGLLNA--PSLYILDVSNNMLSGQLPHWA--------GNFSNLDVLLMSRNSLEGDVSVPLSN---LQVTRILDIS 324 (659)
Q Consensus 258 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~ 324 (659)
+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+.. ..+|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6655555544 566666666666664433322 23456666666666665544443322 2556666666
Q ss_pred CCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhc--CCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcc
Q 042632 325 GNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINE--DSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGS 402 (659)
Q Consensus 325 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 402 (659)
+|...+.... .+.+.+..+..+.. .++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 248 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 248 NSYNMGSSFG-------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp TCTTTSCCTT-------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccc-------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 6654432111 11222222222322 36899999999999988899999999999999999999977
Q ss_pred cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCCh
Q 042632 403 IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPS 482 (659)
Q Consensus 403 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 482 (659)
.|..|.. +++|+.|+|++|++++..|.
T Consensus 315 ~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 315 DDNAFWG-----------------------------------------------------LTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCEECGG
T ss_pred ChhHhcC-----------------------------------------------------cccCCEEECCCCccCCcChh
Confidence 7777765 67899999999999988899
Q ss_pred hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCC
Q 042632 483 EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSR 556 (659)
Q Consensus 483 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 556 (659)
.++.+++|++|+|++|++++..|..|..+++|++|++++|++++..++.+..+++|++|++++|+++|.+|...
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 99999999999999999998889999999999999999999997777778999999999999999999988653
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-40 Score=352.19 Aligned_cols=404 Identities=24% Similarity=0.281 Sum_probs=279.5
Q ss_pred CccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCC
Q 042632 22 PQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLR 101 (659)
Q Consensus 22 ~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~ 101 (659)
|+.+ +.++|++|++++|.+ +.+| ..++++++|++|++++|.+.+. .|..++++++|+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP-~~i~~L~~L~~L~l~~n~~~~~--------------------~p~~~~~l~~L~ 61 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMP-VEAENVKSKTEYYNAWSEWERN--------------------APPGNGEQREMA 61 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHT--------------------SCTTSCCCHHHH
T ss_pred cccc-ccccchhhhcccCch-hhCC-hhHhcccchhhhhccCCccccc--------------------CCcccccchhcc
Confidence 4444 458999999999999 5999 7899999999999999887754 566777777777
Q ss_pred EEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccC
Q 042632 102 YIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQN 181 (659)
Q Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n 181 (659)
.+++++|.. .++++|++++|.+++.+.. .++|++|++++|.+++ +|.. +++|++|++++|
T Consensus 62 ~l~l~~c~~------------~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n 121 (454)
T 1jl5_A 62 VSRLRDCLD------------RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNN 121 (454)
T ss_dssp HHHHHHHHH------------HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSS
T ss_pred hhhhhhhhc------------cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCC
Confidence 766665532 5689999999999986553 4789999999999985 6652 579999999999
Q ss_pred cccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcccc
Q 042632 182 SFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLE 261 (659)
Q Consensus 182 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 261 (659)
.+++ ++.. .++|++|++++|.++ .+|. +..+++|++|++++|++++ +|.. .++|++|++++|++++ +|
T Consensus 122 ~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~ 189 (454)
T 1jl5_A 122 NLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP 189 (454)
T ss_dssp CCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC
T ss_pred ccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc
Confidence 9984 3322 278999999999998 6884 6899999999999999986 4433 3589999999999996 45
Q ss_pred ccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCC
Q 042632 262 EGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSL 341 (659)
Q Consensus 262 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L 341 (659)
.+..+++|+.|++++|.+++ +|... ++|++|++++|.+. .+| .+..+++|++|++++|++++... .+++|
T Consensus 190 -~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L 259 (454)
T 1jl5_A 190 -ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSL 259 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTC
T ss_pred -cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---ccccc
Confidence 58999999999999999985 44432 58999999999998 555 48899999999999999986433 35789
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCC
Q 042632 342 RHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFN 421 (659)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~ 421 (659)
++|++++|++++ +|.. +++|++|++++|++++. |.. .++|+.|++++|++++ ++.
T Consensus 260 ~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~~---------------- 314 (454)
T 1jl5_A 260 EALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LCD---------------- 314 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-ECC----------------
T ss_pred CEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-ccC----------------
Confidence 999999999985 5543 47899999999999863 221 2689999999999874 221
Q ss_pred CceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCc
Q 042632 422 GFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFS 501 (659)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 501 (659)
..++|+.|++++|++++ +|.. +++|++|++++|+++
T Consensus 315 ----------------------------------------~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 315 ----------------------------------------LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ----------------------------------------CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence 03579999999999995 6654 588999999999999
Q ss_pred ccCCccccccCCCCEEECcCCcccc--cCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCC
Q 042632 502 GSIPRSFSILKMIESMDLSYNELSG--RIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLC 573 (659)
Q Consensus 502 ~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c 573 (659)
.+|. .+++|++|++++|++++ .+|..+. +++.|.+.+.+|.. +++++.+++++|+...
T Consensus 351 -~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~--------~L~~n~~~~~i~~~--~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 351 -EVPE---LPQNLKQLHVEYNPLREFPDIPESVE--------DLRMNSHLAEVPEL--PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC--------EEECCC--------------------------
T ss_pred -cccc---hhhhccEEECCCCCCCcCCCChHHHH--------hhhhcccccccccc--cCcCCEEECCCCcCCc
Confidence 5666 47899999999999997 6666543 23567788888764 5788899999998875
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=338.53 Aligned_cols=345 Identities=17% Similarity=0.143 Sum_probs=198.1
Q ss_pred cEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEcc
Q 042632 149 LHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLS 228 (659)
Q Consensus 149 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 228 (659)
+.++.++++++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECC
Confidence 45666666655 556544 346677777777776655666666777777777777666 3333334666666666666
Q ss_pred CccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccC
Q 042632 229 HNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDV 308 (659)
Q Consensus 229 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 308 (659)
+|++....+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 66666555555666666666666666666555566666666666666666666555555666666666666666655444
Q ss_pred CccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCC
Q 042632 309 SVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 388 (659)
Q Consensus 309 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 388 (659)
+..+..+++|+.|++++|.+. +..+..+..+++|++|++++|...+.++.......+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~-----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNIN-----------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCC-----------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred hhHhcccCCCcEEeCCCCcCc-----------------------EeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 444555555555555555544 333444455555555555555544444444444445
Q ss_pred CcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccE
Q 042632 389 LSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTG 468 (659)
Q Consensus 389 L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 468 (659)
|+.|++++|++++..+..+.. +++|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~-----------------------------------------------------l~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRH-----------------------------------------------------LVYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTT-----------------------------------------------------CTTCCE
T ss_pred ccEEECcCCcccccCHHHhcC-----------------------------------------------------ccccCe
Confidence 666666666555322233332 445666
Q ss_pred EEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcc
Q 042632 469 LDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDL 548 (659)
Q Consensus 469 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 548 (659)
|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 66666666655555566666666666666666655566666666666666666666655555555666666666666666
Q ss_pred ccCCCCCCCCCCCCcCccCCCCCCCC
Q 042632 549 LGPVPNSRQFANFDENNYRGNPLLCG 574 (659)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~~N~~~c~ 574 (659)
.|.++..+.+.......+.++...|.
T Consensus 333 ~c~c~~~~~~~~~~~~~~~~~~~~C~ 358 (477)
T 2id5_A 333 ACDCRLLWVFRRRWRLNFNRQQPTCA 358 (477)
T ss_dssp ECSGGGHHHHTTTTSSCCTTCCCBEE
T ss_pred cCccchHhHHhhhhccccCccCceeC
Confidence 65443322222233344455555554
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.2e-37 Score=324.97 Aligned_cols=361 Identities=20% Similarity=0.162 Sum_probs=211.1
Q ss_pred cCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCC
Q 042632 20 SLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYD 99 (659)
Q Consensus 20 ~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~ 99 (659)
..+..++++++|++|++++|.++ .+| .++.+++|++|++++|.+++ ++ ++.+++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~---------------------~~--~~~l~~ 86 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITT---------------------LD--LSQNTN 86 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSC---------------------CC--CTTCTT
T ss_pred ccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCe---------------------Ec--cccCCC
Confidence 34455667777777777777776 455 47777777777777776663 11 456667
Q ss_pred CCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcc
Q 042632 100 LRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMS 179 (659)
Q Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 179 (659)
|++|++++|.++ .++ +..+++|++|++++|.+++.+ ... +++|++|+++
T Consensus 87 L~~L~Ls~N~l~-~~~---~~~l~~L~~L~L~~N~l~~l~--~~~-------------------------l~~L~~L~l~ 135 (457)
T 3bz5_A 87 LTYLACDSNKLT-NLD---VTPLTKLTYLNCDTNKLTKLD--VSQ-------------------------NPLLTYLNCA 135 (457)
T ss_dssp CSEEECCSSCCS-CCC---CTTCTTCCEEECCSSCCSCCC--CTT-------------------------CTTCCEEECT
T ss_pred CCEEECcCCCCc-eee---cCCCCcCCEEECCCCcCCeec--CCC-------------------------CCcCCEEECC
Confidence 777777777776 343 346666666666666665431 223 3444444444
Q ss_pred cCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcc
Q 042632 180 QNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGR 259 (659)
Q Consensus 180 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 259 (659)
+|++++ ++ ++.+++|++|++++|...+.++ +..+++|++|++++|++++. + +..+++|++|++++|++++.
T Consensus 136 ~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 136 RNTLTE-ID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp TSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC
T ss_pred CCccce-ec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee
Confidence 444442 11 3444445555555543322332 23445555555555555442 1 44555555555555555543
Q ss_pred ccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCC
Q 042632 260 LEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHS 339 (659)
Q Consensus 260 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 339 (659)
.+..+++|+.|++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++|
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------------- 264 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------------- 264 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------
T ss_pred ---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------
Confidence 24555666666666666654 33 555666666666666665432 344556666666554
Q ss_pred CCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCC
Q 042632 340 SLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDS 419 (659)
Q Consensus 340 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~ 419 (659)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++|
T Consensus 265 ~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------------- 317 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------------- 317 (457)
T ss_dssp CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC----------------------
T ss_pred CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc----------------------
Confidence 34556666666655554 35567777777777766555543 2334444444332
Q ss_pred CCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCc
Q 042632 420 FNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNH 499 (659)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 499 (659)
++|+.|++++|++++. + ++.+++|+.|++++|+
T Consensus 318 --------------------------------------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 318 --------------------------------------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp --------------------------------------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSC
T ss_pred --------------------------------------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCC
Confidence 3567777777777763 2 6777777777777777
Q ss_pred CcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC
Q 042632 500 FSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 500 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
+++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..
T Consensus 351 l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 351 IQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 774 24455667777777765 24455677778888888777754
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-37 Score=325.60 Aligned_cols=356 Identities=20% Similarity=0.215 Sum_probs=218.1
Q ss_pred CCCCCCCEEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCC
Q 042632 2 CELKNLVELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRL 81 (659)
Q Consensus 2 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 81 (659)
+++++|++|++++|.+++. | .+..+++|++|++++|+++ .+| ++.+++|++|++++|.+++.
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~------------ 100 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL------------ 100 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC------------
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee------------
Confidence 3578999999999999964 5 6999999999999999998 576 89999999999999998742
Q ss_pred ccccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCccc
Q 042632 82 EHCNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGT 161 (659)
Q Consensus 82 ~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 161 (659)
+ ++.+++|++|++++|.++ .+| +..+++|++|++++|.+++. ....+++|++|++++|+..+.
T Consensus 101 ---------~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~ 163 (457)
T 3bz5_A 101 ---------D--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITK 163 (457)
T ss_dssp ---------C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCC
T ss_pred ---------e--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccc
Confidence 2 678899999999999999 465 45899999999999998875 234566666666666644434
Q ss_pred CChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCC
Q 042632 162 LPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYM 241 (659)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 241 (659)
++ +. .+++|++|++++|++++ +| +..+++|+.|++++|.++ .++ +..+++|++|++++|++.+
T Consensus 164 ~~--~~-~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~-~~~---l~~l~~L~~L~Ls~N~l~~------- 226 (457)
T 3bz5_A 164 LD--VT-PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT-KLD---LNQNIQLTFLDCSSNKLTE------- 226 (457)
T ss_dssp CC--CT-TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSC-------
T ss_pred cc--cc-cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC-eec---cccCCCCCEEECcCCcccc-------
Confidence 32 22 25556666666655553 23 445555555555555554 222 2344455555555554444
Q ss_pred CCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEE
Q 042632 242 NLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRIL 321 (659)
Q Consensus 242 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 321 (659)
+| +..+++|+.|++++|++++.. ++.+++|+.|++++| +|+.+
T Consensus 227 ------------------ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L 269 (457)
T 3bz5_A 227 ------------------ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEI 269 (457)
T ss_dssp ------------------CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCC
T ss_pred ------------------cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEE
Confidence 22 444445555555555544322 233444555554443 23344
Q ss_pred EccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc
Q 042632 322 DISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG 401 (659)
Q Consensus 322 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 401 (659)
++++|.+.+..+ ...+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++
T Consensus 270 ~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 270 DLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE 332 (457)
T ss_dssp CCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC
T ss_pred ECCCCccCCccc-ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc
Confidence 455554444333 22455566666666655444442 2334444444433 456666666666654
Q ss_pred ccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCC
Q 042632 402 SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIP 481 (659)
Q Consensus 402 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 481 (659)
. + +.+ +++|+.||+++|++++
T Consensus 333 l-~--l~~-----------------------------------------------------l~~L~~L~l~~N~l~~--- 353 (457)
T 3bz5_A 333 L-D--VSH-----------------------------------------------------NTKLKSLSCVNAHIQD--- 353 (457)
T ss_dssp C-C--CTT-----------------------------------------------------CTTCSEEECCSSCCCB---
T ss_pred c-c--ccc-----------------------------------------------------CCcCcEEECCCCCCCC---
Confidence 2 1 222 4556666666666663
Q ss_pred hhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhh
Q 042632 482 SEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLEL 532 (659)
Q Consensus 482 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 532 (659)
++.|..|++++|.++|. ..+..|+.+++++|+++|.+|..+
T Consensus 354 -----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 354 -----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred -----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 23445556666666644 234556666677777766666544
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.8e-36 Score=322.22 Aligned_cols=346 Identities=24% Similarity=0.286 Sum_probs=213.5
Q ss_pred CCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEE
Q 042632 97 QYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYL 176 (659)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 176 (659)
++++++|+++++.++ .+|. +..+++|++|++++|.+++.+. ... +++|++|
T Consensus 45 l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~-------------------------l~~L~~L 95 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKN-------------------------LTKLVDI 95 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTT-------------------------CTTCCEE
T ss_pred hccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhc-------------------------cccCCEE
Confidence 446777777777776 5554 3366777777777766665432 233 4455555
Q ss_pred EcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCC
Q 042632 177 DMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQF 256 (659)
Q Consensus 177 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i 256 (659)
++++|.+.+. +. +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|+++ |.+
T Consensus 96 ~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~ 167 (466)
T 1o6v_A 96 LMNNNQIADI-TP-LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQV 167 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESC
T ss_pred ECCCCccccC-hh-hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-Ccc
Confidence 5555554422 22 445555555555555554 3332 34555555555555555432 124455555555554 233
Q ss_pred CccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC
Q 042632 257 TGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS 336 (659)
Q Consensus 257 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 336 (659)
.+.. .+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. +...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~ 240 (466)
T 1o6v_A 168 TDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GTLA 240 (466)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGG
T ss_pred cCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hhhh
Confidence 3221 255555555666655555432 235555666666666666554333 44556666666666666543 2233
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------- 307 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------- 307 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG-------
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC-------
Confidence 56677777777777765433 6777788888888888775433 6777888888888887775333 222
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLS 496 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 496 (659)
+++|+.|++++|++++..| ++.+++|++|+++
T Consensus 308 ----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 308 ----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp ----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred ----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 5678888888888886554 6778888888888
Q ss_pred CCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccC
Q 042632 497 HNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 497 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
+|++++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 8888754 467788888888888888887666 77888888888888888874
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=322.08 Aligned_cols=346 Identities=22% Similarity=0.264 Sum_probs=290.8
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEE
Q 042632 146 RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFM 225 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 225 (659)
++++.|+++++.+. .+|. +. .+++|++|++++|.+++. +. +..+++|++|++++|.+. .++. +..+++|++|
T Consensus 46 ~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence 34555555555544 3443 33 389999999999999854 44 899999999999999998 5655 6899999999
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccc
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 305 (659)
++++|.+.+..+ +.++++|++|++++|.+.+. + .+..+++|+.|+++ |.+.+. ..+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999999987543 88999999999999999854 3 48899999999997 455433 33889999999999999988
Q ss_pred ccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccC
Q 042632 306 GDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCH 385 (659)
Q Consensus 306 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (659)
+. ..+..+++|++|++++|.+.+..+ ...+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 54 358889999999999999987655 44789999999999999854 468899999999999999986544 889
Q ss_pred CCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccccc
Q 042632 386 LRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNY 465 (659)
Q Consensus 386 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 465 (659)
+++|+.|++++|.+++..+ +.. +++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~-----------------------------------------------------l~~ 288 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAG-----------------------------------------------------LTA 288 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTT-----------------------------------------------------CTT
T ss_pred CCCCCEEECCCCccCcccc--ccC-----------------------------------------------------CCc
Confidence 9999999999999985433 332 678
Q ss_pred ccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccC
Q 042632 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSY 545 (659)
Q Consensus 466 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 545 (659)
|+.|++++|++++..+ ++.+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCC
Confidence 9999999999996544 8899999999999999997766 78999999999999999865 4789999999999999
Q ss_pred CccccCCCCCCCCCCCCcCccCCCCCCCCC
Q 042632 546 NDLLGPVPNSRQFANFDENNYRGNPLLCGP 575 (659)
Q Consensus 546 N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~ 575 (659)
|++++.+| ...++.+..+++++|++..-+
T Consensus 363 n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 363 NQISDLTP-LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp SCCCBCGG-GTTCTTCCEEECCCEEEECCC
T ss_pred CccCccch-hhcCCCCCEEeccCCcccCCc
Confidence 99999887 677888999999999987643
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=327.16 Aligned_cols=322 Identities=21% Similarity=0.164 Sum_probs=261.9
Q ss_pred CEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeec
Q 042632 198 LFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSN 277 (659)
Q Consensus 198 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 277 (659)
+.++.+++.++ .+|..+ .+.++.|++++|++.+..+..|.++++|++|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666665 666543 24677777777777766666777777777777777777766677777777777777777
Q ss_pred ccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCc
Q 042632 278 NMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIP 356 (659)
Q Consensus 278 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 356 (659)
|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+... .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 77775555566777777777777777777777777777788888888887776554333 77888889999998887777
Q ss_pred hhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCC
Q 042632 357 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGR 436 (659)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (659)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.....
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------- 222 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--------------------------- 222 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc---------------------------
Confidence 78999999999999999999888889999999999999999887766654332
Q ss_pred cccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCE
Q 042632 437 RLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIES 516 (659)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 516 (659)
..+|+.|++++|++++..+..+..+++|+.|+|++|++++..+..|..+++|+.
T Consensus 223 --------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 223 --------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp --------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred --------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 347999999999999655578999999999999999999888889999999999
Q ss_pred EECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 517 MDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 517 L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
|+|++|.+++..|..|..+++|+.|++++|++++..+.. ..+++++.+++++||+.|++.
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 999999999999999999999999999999999876654 667889999999999999764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-36 Score=311.30 Aligned_cols=335 Identities=20% Similarity=0.168 Sum_probs=176.0
Q ss_pred CCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCE
Q 042632 145 KRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEF 224 (659)
Q Consensus 145 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 224 (659)
+++++.++++++.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 344555555555543 344433333555555555555554444444555555555555555554 333333344455555
Q ss_pred EEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcc
Q 042632 225 MNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSL 304 (659)
Q Consensus 225 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 304 (659)
|++++|++....+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++. .+..++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~------------ 186 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIP------------ 186 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCT------------
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cccccc------------
Confidence 55555554433333344444555555555544444444444444444444444444422 123334
Q ss_pred cccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCcccc
Q 042632 305 EGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLC 384 (659)
Q Consensus 305 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 384 (659)
+|+.+++++|.+.+.. ..++|++|++++|.+... |.. ..++|++|++++|.+++. ..+.
T Consensus 187 ------------~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 187 ------------SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp ------------TCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG
T ss_pred ------------ccceeecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc
Confidence 4444444444443211 123455555555555422 221 234566666666666532 3455
Q ss_pred CCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccc
Q 042632 385 HLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLN 464 (659)
Q Consensus 385 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 464 (659)
.+++|++|++++|.+++..|..+.. ++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------------------------------------l~ 272 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQ 272 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CS
T ss_pred CCCCccEEECCCCcCCCcChhHccc-----------------------------------------------------cc
Confidence 5666666666666666555554443 44
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEecc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVS 544 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 544 (659)
+|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. | +..+++|+.|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence 56666666666663 3444556667777777777776 4555666677777777777777633 2 5566777777777
Q ss_pred CCccccCCCCCCCCCCCCcCccCCCCCCCCCC
Q 042632 545 YNDLLGPVPNSRQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 545 ~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+|++.+.... ..+..+....+.+++..|+.+
T Consensus 348 ~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 348 HNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 7777764221 234445555667777777653
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=9e-35 Score=303.41 Aligned_cols=312 Identities=20% Similarity=0.185 Sum_probs=257.0
Q ss_pred CCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEE
Q 042632 194 MERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYIL 273 (659)
Q Consensus 194 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 273 (659)
+++++.|++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 567777777777776 7777777777888888888888777777778888888888888888887777778888888888
Q ss_pred EeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCC
Q 042632 274 DVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNG 353 (659)
Q Consensus 274 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 353 (659)
++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. ...+++|+.|++++|.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccc
Confidence 88888888554555678888888888888888777777888888999999988887642 3367899999999998874
Q ss_pred CCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccc
Q 042632 354 NIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDA 433 (659)
Q Consensus 354 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (659)
+...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~------------------------ 246 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN------------------------ 246 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGG------------------------
T ss_pred -----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcC------------------------
Confidence 23456899999999999854 332 357999999999999853 23332
Q ss_pred cCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCC
Q 042632 434 SGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKM 513 (659)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 513 (659)
+++|+.|++++|++++..|..+..+++|++|+|++|++++ +|..+..+++
T Consensus 247 -----------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~ 296 (390)
T 3o6n_A 247 -----------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT 296 (390)
T ss_dssp -----------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTT
T ss_pred -----------------------------CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCC
Confidence 6789999999999999889999999999999999999994 6777788999
Q ss_pred CCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCCCC
Q 042632 514 IESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGP 575 (659)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~ 575 (659)
|++|++++|+++ .+|..+..+++|+.|++++|+++... ...++.++.+++++||+.|.+
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchh
Confidence 999999999998 67888899999999999999998753 456788999999999999954
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-35 Score=320.98 Aligned_cols=334 Identities=20% Similarity=0.175 Sum_probs=188.4
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEE
Q 042632 146 RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFM 225 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 225 (659)
.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+.+++|++|++++|.+. .+|...+..+++|++|
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEE
Confidence 44555555555544 334433333555555555555555444445555555555555555554 3333334455555555
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccc
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 305 (659)
++++|.+.+..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l-------------- 191 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLI-------------- 191 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGC--------------
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhh--------------
Confidence 55555555443333445555555555555555444444444555555555555444321 2333
Q ss_pred ccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccC
Q 042632 306 GDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCH 385 (659)
Q Consensus 306 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (659)
++|+.|++++|.+.+.. .+++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..
T Consensus 192 ----------~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~ 252 (597)
T 3oja_B 192 ----------PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLN 252 (597)
T ss_dssp ----------TTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGG
T ss_pred ----------hhhhhhhcccCcccccc----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--Chhhcc
Confidence 44445555554443321 223455566666555422 2211 2466666666666663 245666
Q ss_pred CCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccccc
Q 042632 386 LRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNY 465 (659)
Q Consensus 386 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 465 (659)
+++|+.|++++|.+++..|..|.. +++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------------------------l~~ 279 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVK-----------------------------------------------------MQR 279 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT-----------------------------------------------------CSS
T ss_pred CCCCCEEECCCCccCCCCHHHhcC-----------------------------------------------------ccC
Confidence 667777777777766665655544 456
Q ss_pred ccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccC
Q 042632 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSY 545 (659)
Q Consensus 466 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 545 (659)
|+.|+|++|++++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | +..+++|+.|++++
T Consensus 280 L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 280 LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCS
T ss_pred CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeC
Confidence 6777777777764 4555566777777777777777 5666677777777777777777643 2 56677888888888
Q ss_pred CccccCCCCCCCCCCCCcCccCCCCCCCCCC
Q 042632 546 NDLLGPVPNSRQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 546 N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~ 576 (659)
|++.|..+. ..+..+....+.+++..|+.+
T Consensus 355 N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 355 NDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 888875322 234455556677888888753
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-33 Score=290.27 Aligned_cols=304 Identities=20% Similarity=0.293 Sum_probs=205.0
Q ss_pred CCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEE
Q 042632 170 LPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWL 249 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (659)
+++|++|+++++.+. .++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+... +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 556666666666665 233 3666666666666666666 4444 45666677777766666542 346666677777
Q ss_pred EccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCc
Q 042632 250 YLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLY 329 (659)
Q Consensus 250 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 329 (659)
++++|.+.+..+ +..+++|++|++++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 777776664332 66667777777777754433 3336667777777777776664333 566677777777777766
Q ss_pred CcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcc
Q 042632 330 GPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTN 409 (659)
Q Consensus 330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 409 (659)
+..+ ...+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. + .+..
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~ 263 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-N-AVKD 263 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTT
T ss_pred cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-h-hHhc
Confidence 5433 3466777777777777775433 6777888888888888874333 77788888888888877642 1 2222
Q ss_pred ccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhcccc
Q 042632 410 ISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQE 489 (659)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 489 (659)
+++|+.|++++|++++. +.+..+++
T Consensus 264 -----------------------------------------------------l~~L~~L~l~~n~l~~~--~~~~~l~~ 288 (347)
T 4fmz_A 264 -----------------------------------------------------LTKLKMLNVGSNQISDI--SVLNNLSQ 288 (347)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred -----------------------------------------------------CCCcCEEEccCCccCCC--hhhcCCCC
Confidence 56788888888888753 35778888
Q ss_pred CCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccc
Q 042632 490 LHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLL 549 (659)
Q Consensus 490 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 549 (659)
|++|++++|++++..|..++.+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888887777778888888888888888876555 777888888888888775
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.9e-35 Score=294.89 Aligned_cols=259 Identities=30% Similarity=0.510 Sum_probs=207.9
Q ss_pred CCCCEEEccCCCCCc--cccccccCCCCCcEEEeec-ccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcE
Q 042632 244 TQLAWLYLSDNQFTG--RLEEGLLNAPSLYILDVSN-NMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRI 320 (659)
Q Consensus 244 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 320 (659)
.++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.+..|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------- 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------- 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-------
Confidence 345566666666655 5555555556666666653 555555555555555555555555555544444444
Q ss_pred EEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCC-CCcEEEccCCcC
Q 042632 321 LDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLR-KLSIVDISCNNL 399 (659)
Q Consensus 321 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 399 (659)
.+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|.+
T Consensus 123 ----------------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 123 ----------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ----------------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ----------------CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 455666666666666667788889999999999999999988999999998 999999999999
Q ss_pred CcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc
Q 042632 400 NGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD 479 (659)
Q Consensus 400 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 479 (659)
++.+|..+.. ++ |+.|++++|++++.
T Consensus 187 ~~~~~~~~~~-----------------------------------------------------l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 187 TGKIPPTFAN-----------------------------------------------------LN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp EEECCGGGGG-----------------------------------------------------CC-CSEEECCSSEEEEC
T ss_pred eccCChHHhC-----------------------------------------------------Cc-ccEEECcCCcccCc
Confidence 9888887765 33 89999999999999
Q ss_pred CChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCC
Q 042632 480 IPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFA 559 (659)
Q Consensus 480 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~ 559 (659)
.|..++.+++|++|+|++|++++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|....++
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~ 291 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGG
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcccc
Confidence 999999999999999999999976665 8889999999999999999999999999999999999999999999998899
Q ss_pred CCCcCccCCCCCCCCCCCCCCC
Q 042632 560 NFDENNYRGNPLLCGPPVLKNC 581 (659)
Q Consensus 560 ~l~~~~~~~N~~~c~~~~~~~C 581 (659)
+++.+++.+||++||.|.. .|
T Consensus 292 ~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 292 RFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GSCGGGTCSSSEEESTTSS-CC
T ss_pred ccChHHhcCCCCccCCCCC-CC
Confidence 9999999999999998764 46
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-34 Score=313.72 Aligned_cols=312 Identities=20% Similarity=0.178 Sum_probs=263.2
Q ss_pred CCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEE
Q 042632 194 MERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYIL 273 (659)
Q Consensus 194 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 273 (659)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 567778888888877 7777777788888888888888887777788888888888888888888777788888888888
Q ss_pred EeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCC
Q 042632 274 DVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNG 353 (659)
Q Consensus 274 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~ 353 (659)
++++|.+++..+..|+.+++|++|++++|.+.+..+..+..+++|++|++++|.+++.. ...+++|+.|++++|.+++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence 88888888665666788889999999999888888888888999999999999887642 3367899999999998874
Q ss_pred CCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccc
Q 042632 354 NIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDA 433 (659)
Q Consensus 354 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 433 (659)
+...++|+.|++++|.+....+. + .++|+.|++++|.+++. ..+..
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~------------------------ 252 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLN------------------------ 252 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGG------------------------
T ss_pred -----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhcc------------------------
Confidence 34557899999999999854433 2 36899999999999853 33333
Q ss_pred cCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCC
Q 042632 434 SGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKM 513 (659)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 513 (659)
+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++ +|..+..+++
T Consensus 253 -----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 302 (597)
T 3oja_B 253 -----------------------------YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPT 302 (597)
T ss_dssp -----------------------------CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTT
T ss_pred -----------------------------CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCC
Confidence 6789999999999999999999999999999999999995 6778888999
Q ss_pred CCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCCCC
Q 042632 514 IESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGP 575 (659)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~ 575 (659)
|+.|+|++|.++ .+|..+..+++|+.|++++|++++.. ...++.+..+++++||+.|.+
T Consensus 303 L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 303 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHH
T ss_pred CcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChh
Confidence 999999999999 78888999999999999999998863 355788999999999999954
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7e-33 Score=284.51 Aligned_cols=282 Identities=24% Similarity=0.323 Sum_probs=200.6
Q ss_pred CCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEE
Q 042632 170 LPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWL 249 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (659)
+++|++|++++|.+++ ++. +..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred cCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCCEEECcCCcccCchh--hccCCceeEE
Confidence 5666666666666653 232 566666666666666665 4442 4566666666666666654332 5566666777
Q ss_pred EccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCc
Q 042632 250 YLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLY 329 (659)
Q Consensus 250 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 329 (659)
++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.
T Consensus 138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 77666444333 236667777777777777663322 6667777777777777764332 666777777888777776
Q ss_pred CcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcc
Q 042632 330 GPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTN 409 (659)
Q Consensus 330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 409 (659)
+..+ ...+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. + .+..
T Consensus 213 ~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~ 285 (347)
T 4fmz_A 213 DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN 285 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG
T ss_pred CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC
Confidence 5444 4467788888888888875433 78889999999999998853 4688899999999999998743 2 2322
Q ss_pred ccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhcccc
Q 042632 410 ISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQE 489 (659)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 489 (659)
+++|+.|++++|++++..|..++.+++
T Consensus 286 -----------------------------------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 286 -----------------------------------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp -----------------------------------------------------CTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred -----------------------------------------------------CCCCCEEECcCCcCCCcChhHhhcccc
Confidence 678999999999999888899999999
Q ss_pred CCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 490 LHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 490 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
|++|++++|++++..| +..+++|++|++++|+++
T Consensus 313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999999997666 888999999999999986
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.8e-32 Score=275.51 Aligned_cols=287 Identities=20% Similarity=0.209 Sum_probs=205.4
Q ss_pred CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEe
Q 042632 196 RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDV 275 (659)
Q Consensus 196 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 275 (659)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|.++++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666665 666543 256667777777766666666677777777777777777666666777777777777
Q ss_pred ecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcC--cCCCCC-CCCCCcEEEccCCcCC
Q 042632 276 SNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYG--PLEFSS-NHSSLRHLFLHNNSLN 352 (659)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~-~~~~L~~L~l~~n~l~ 352 (659)
++|.++ .+|..+. ++|++|++++|.+....+..+..+++|+.|++++|.++. ..+... .+ +|+.|++++|+++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3444333 667777777777776555567777777777777777653 223222 33 7778888888777
Q ss_pred CCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccc
Q 042632 353 GNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLD 432 (659)
Q Consensus 353 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (659)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------- 239 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------- 239 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------
Confidence 4 444433 68888888888888777778888888888899888888666655554
Q ss_pred ccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCcccccc-
Q 042632 433 ASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSIL- 511 (659)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l- 511 (659)
+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus 240 ------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 240 ------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp ------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred ------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 567888999999888 778788889999999999999987766666553
Q ss_pred -----CCCCEEECcCCccc--ccCChhhhcCCCCCeEeccCCc
Q 042632 512 -----KMIESMDLSYNELS--GRIPLELSELNYLAIFNVSYND 547 (659)
Q Consensus 512 -----~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~l~~N~ 547 (659)
+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 67889999999887 6677888889999999998885
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.4e-32 Score=274.70 Aligned_cols=288 Identities=21% Similarity=0.220 Sum_probs=174.2
Q ss_pred CCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEc
Q 042632 172 ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251 (659)
Q Consensus 172 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 251 (659)
+++.++++++.++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|++.+..+..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3455555555554 344333 245555555555555 333333455555555555555555555555555555555555
Q ss_pred cCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccc--cCCccCCCCCCCcEEEccCCcCc
Q 042632 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEG--DVSVPLSNLQVTRILDISGNKLY 329 (659)
Q Consensus 252 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 329 (659)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 555555 2233222 556666666666654444455666666666666666542 444555555 6666666666665
Q ss_pred CcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcc
Q 042632 330 GPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTN 409 (659)
Q Consensus 330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 409 (659)
+..... .++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+++ .+|..+..
T Consensus 186 ~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 186 GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp SCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred ccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 533222 256777777777777666667777777777777777777666667777777777777777776 55555443
Q ss_pred ccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhc---
Q 042632 410 ISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGL--- 486 (659)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~--- 486 (659)
+++|+.|++++|++++..+..|..
T Consensus 263 -----------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~ 289 (332)
T 2ft3_A 263 -----------------------------------------------------LKLLQVVYLHTNNITKVGVNDFCPVGF 289 (332)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCCBCCTTSSSCSSC
T ss_pred -----------------------------------------------------CccCCEEECCCCCCCccChhHcccccc
Confidence 556777777777777665555544
Q ss_pred ---cccCCEEeCCCCcCc--ccCCccccccCCCCEEECcCCc
Q 042632 487 ---LQELHALNLSHNHFS--GSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 487 ---l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
...|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 290 ~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356778888888776 5667777888888888887774
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.1e-35 Score=313.56 Aligned_cols=357 Identities=18% Similarity=0.119 Sum_probs=249.4
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccc----cCChhhcCCCCCCEEeCcCCcCccccChhhhhCCC-
Q 042632 146 RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVG----SIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCV- 220 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 220 (659)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777777766544444434457788888888888763 23556777788888888888887544555555555
Q ss_pred ---CCCEEEccCccccc----cCCcCCCCCCCCCEEEccCCCCCcccccccc-----CCCCCcEEEeecccccCCC----
Q 042632 221 ---SLEFMNLSHNLFVG----QIFPKYMNLTQLAWLYLSDNQFTGRLEEGLL-----NAPSLYILDVSNNMLSGQL---- 284 (659)
Q Consensus 221 ---~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~---- 284 (659)
+|++|++++|++.. ..+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 3466677888888888888887754443332 2567888888888887533
Q ss_pred ChhhhCCCCCCEEEccCCcccccCCccCC-----CCCCCcEEEccCCcCcCcC----C-CCCCCCCCcEEEccCCcCCCC
Q 042632 285 PHWAGNFSNLDVLLMSRNSLEGDVSVPLS-----NLQVTRILDISGNKLYGPL----E-FSSNHSSLRHLFLHNNSLNGN 354 (659)
Q Consensus 285 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~----~-~~~~~~~L~~L~l~~n~l~~~ 354 (659)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.. + ....+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566678888888888887654433332 2457888888888876531 1 122567888888888887643
Q ss_pred Cc-----hhhhcCCCCceEecCCCccccc----CCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 355 IP-----HLINEDSNLRALLLRGNNLQGN----IPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 355 ~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
.. ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+...-
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------------- 308 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-------------- 308 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------
Confidence 22 2223578888888888888754 456677788888888888888654444433210
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc----CChhhhccccCCEEeCCCCcCc
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD----IPSEIGLLQELHALNLSHNHFS 501 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 501 (659)
....++|+.|++++|.+++. ++..+..+++|++|+|++|+++
T Consensus 309 ----------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 309 ----------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp ----------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred ----------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 01135788889998888865 4566677788999999988887
Q ss_pred ccCCccccc-----cCCCCEEECcCCcccc----cCChhhhcCCCCCeEeccCCcccc
Q 042632 502 GSIPRSFSI-----LKMIESMDLSYNELSG----RIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 502 ~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
+..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 665554443 6788899999998886 678888888889999999988875
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.5e-31 Score=272.22 Aligned_cols=289 Identities=19% Similarity=0.229 Sum_probs=171.7
Q ss_pred CCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEc
Q 042632 172 ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251 (659)
Q Consensus 172 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 251 (659)
+++.++++++.++ .+|..+. ++++.|++++|.++ .++...+..+++|++|++++|++.+..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4666666666665 4444332 45666666666665 444444456666666666666666555556666666666666
Q ss_pred cCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccc--cCCccCCCCCCCcEEEccCCcCc
Q 042632 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEG--DVSVPLSNLQVTRILDISGNKLY 329 (659)
Q Consensus 252 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~ 329 (659)
++|+++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~------------- 171 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK------------- 171 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-------------
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-------------
Confidence 666655 2333222 455666666665554444455555555555555555532 3333444444
Q ss_pred CcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcc
Q 042632 330 GPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTN 409 (659)
Q Consensus 330 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 409 (659)
+|++|++++|.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 172 ----------~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 172 ----------KLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp ----------TCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred ----------CcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 44444444444442 232222 56677777777766666666667777777777777776544444433
Q ss_pred ccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhcccc
Q 042632 410 ISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQE 489 (659)
Q Consensus 410 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 489 (659)
+++|+.|++++|+++ .+|..+..+++
T Consensus 239 -----------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 239 -----------------------------------------------------TPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp -----------------------------------------------------STTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred -----------------------------------------------------CCCCCEEECCCCcCc-cCChhhccCCC
Confidence 456777777777777 66667777777
Q ss_pred CCEEeCCCCcCcccCCccccc------cCCCCEEECcCCcccc--cCChhhhcCCCCCeEeccCCc
Q 042632 490 LHALNLSHNHFSGSIPRSFSI------LKMIESMDLSYNELSG--RIPLELSELNYLAIFNVSYND 547 (659)
Q Consensus 490 L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~l~~N~ 547 (659)
|++|++++|++++..+..|.. .+.|+.|++++|++.. ..|..|..++.++.+++++|+
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777777777665555543 3677788888887753 456677778888888888774
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.3e-34 Score=309.80 Aligned_cols=385 Identities=18% Similarity=0.130 Sum_probs=223.6
Q ss_pred CCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccc-----cCCCCCCCCccEEEcccCcCcccCChhhhhcCC-
Q 042632 98 YDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGR-----LHLPDSKRDLLHLVISNNNFIGTLPDNFGVILP- 171 (659)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~- 171 (659)
++|++||+++|.+++.....++..+++|++|++++|.++.. +.....+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46889999999988544455567889999999999988743 122235677778888877776555555554455
Q ss_pred ---CCcEEEcccCcccc----cCChhhcCCCCCCEEeCcCCcCccccChhh----hhCCCCCCEEEccCccccccC----
Q 042632 172 ---ELVYLDMSQNSFVG----SIPPSTGYMERLLFLDLSSNNFSGELPKQF----LTGCVSLEFMNLSHNLFVGQI---- 236 (659)
Q Consensus 172 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~l~~L~~L~l~~n~i~~~~---- 236 (659)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ....++|++|++++|++.+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57788888777763 346667777777777777777763323222 122445666666666665432
Q ss_pred CcCCCCCCCCCEEEccCCCCCcccccccc-----CCCCCcEEEeecccccCC----CChhhhCCCCCCEEEccCCccccc
Q 042632 237 FPKYMNLTQLAWLYLSDNQFTGRLEEGLL-----NAPSLYILDVSNNMLSGQ----LPHWAGNFSNLDVLLMSRNSLEGD 307 (659)
Q Consensus 237 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 307 (659)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 23334455666666666665543333222 234555555555555532 234444455555555555554422
Q ss_pred CCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCC----CchhhhcCCCCceEecCCCcccccCCccc
Q 042632 308 VSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGN----IPHLINEDSNLRALLLRGNNLQGNIPEPL 383 (659)
Q Consensus 308 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 383 (659)
....+. ......+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+
T Consensus 243 ~~~~l~------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 243 GMAELC------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HHHHHH------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred HHHHHH------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 110000 00011345666666666666532 45556667777777777777754433322
Q ss_pred c-----CCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccc
Q 042632 384 C-----HLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESY 458 (659)
Q Consensus 384 ~-----~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (659)
. ..++|++|++++|.+++.....+...-
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----------------------------------------------- 337 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVL----------------------------------------------- 337 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-----------------------------------------------
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHH-----------------------------------------------
Confidence 2 225777777777777644222111100
Q ss_pred cccccccccEEEccCCcCcccCChhhhc-----cccCCEEeCCCCcCcc----cCCccccccCCCCEEECcCCcccccCC
Q 042632 459 KGDVLNYMTGLDLSSNELTGDIPSEIGL-----LQELHALNLSHNHFSG----SIPRSFSILKMIESMDLSYNELSGRIP 529 (659)
Q Consensus 459 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p 529 (659)
..+++|+.||+++|++++..+..+.. .++|++|+|++|.+++ .+|..+..+++|++|++++|++++...
T Consensus 338 --~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~ 415 (461)
T 1z7x_W 338 --AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI 415 (461)
T ss_dssp --HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred --hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence 01456777777777777655544443 5677777777777775 566677777777777777777765422
Q ss_pred hhhh-----cCCCCCeEeccCCccc
Q 042632 530 LELS-----ELNYLAIFNVSYNDLL 549 (659)
Q Consensus 530 ~~l~-----~l~~L~~L~l~~N~l~ 549 (659)
..+. ...+|+.|++.++...
T Consensus 416 ~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 416 LQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHhccCCcchhheeecccccC
Confidence 2222 1335666666665544
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=2.5e-31 Score=270.66 Aligned_cols=249 Identities=19% Similarity=0.191 Sum_probs=186.6
Q ss_pred CCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEE
Q 042632 146 RDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFM 225 (659)
Q Consensus 146 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 225 (659)
.+++.++++++.+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEE
Confidence 47899999999987 677765 468999999999999777778999999999999999998 5533445899999999
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccC--CCChhhhCCCCCCEEEccCCc
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSG--QLPHWAGNFSNLDVLLMSRNS 303 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 303 (659)
++++|++... |..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 9999999854 44433 799999999999998888889999999999999999964 667889999999999999999
Q ss_pred ccccCCccCCCCCCCcEEEccCCcCcCcCCC-CCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCcc
Q 042632 304 LEGDVSVPLSNLQVTRILDISGNKLYGPLEF-SSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEP 382 (659)
Q Consensus 304 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 382 (659)
+.. +|..+. ++|++|++++|.+++..+. ...+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 884 343332 5666666666666554332 225556666666666665554455555666666666666665 45555
Q ss_pred ccCCCCCcEEEccCCcCCcccchh
Q 042632 383 LCHLRKLSIVDISCNNLNGSIPSC 406 (659)
Q Consensus 383 ~~~l~~L~~L~Ls~n~l~~~~p~~ 406 (659)
+..+++|++|++++|++++..+..
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTS
T ss_pred hccCCCcCEEECCCCcCCccChhh
Confidence 555666666666666665433333
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=277.76 Aligned_cols=252 Identities=27% Similarity=0.452 Sum_probs=204.3
Q ss_pred CCCCEEEccCccccc--cCCcCCCCCCCCCEEEccC-CCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCE
Q 042632 220 VSLEFMNLSHNLFVG--QIFPKYMNLTQLAWLYLSD-NQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDV 296 (659)
Q Consensus 220 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 296 (659)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8899999999999999995 9999899999999999999999999999899999999999999
Q ss_pred EEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCC-CCceEecCCCcc
Q 042632 297 LLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDS-NLRALLLRGNNL 375 (659)
Q Consensus 297 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 375 (659)
|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..++ +|++|++++|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------------~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-----------------------GAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-----------------------EECCGGGGCCCTTCCEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCccc-----------------------CcCCHHHhhhhhcCcEEECcCCee
Confidence 999999999888877777766666666665554 44555666665 677777777777
Q ss_pred cccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccc
Q 042632 376 QGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRY 455 (659)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (659)
++..|..+..++ |+.|++++|.+++..|..+..
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~---------------------------------------------- 219 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS---------------------------------------------- 219 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT----------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhc----------------------------------------------
Confidence 767777777665 777777777777666655544
Q ss_pred ccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcC
Q 042632 456 ESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSEL 535 (659)
Q Consensus 456 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 535 (659)
+++|+.|++++|++++..|. +..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+
T Consensus 220 -------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 220 -------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp -------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred -------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 55677777777777755554 677788888888888888888888888888888888888888888876 778
Q ss_pred CCCCeEeccCCc-ccc
Q 042632 536 NYLAIFNVSYND-LLG 550 (659)
Q Consensus 536 ~~L~~L~l~~N~-l~~ 550 (659)
++|+.+++++|+ +.|
T Consensus 291 ~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGSCGGGTCSSSEEES
T ss_pred cccChHHhcCCCCccC
Confidence 888888888888 444
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-31 Score=295.86 Aligned_cols=343 Identities=14% Similarity=0.046 Sum_probs=193.0
Q ss_pred CChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcccccc-ccchhhhhCCCCCCEEEccCccccccCchHHhhcCC
Q 042632 45 LPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNIS-GTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNT 123 (659)
Q Consensus 45 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 123 (659)
.+...+..+++|++|+++++.....+. +......... ..++.....+++|++|++++|.+++..+..+...++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~------~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 137 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFN------LIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGT------CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcc------cccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc
Confidence 344667778888888887754321100 0000000000 012333447888999999988887655555543344
Q ss_pred C-CCEEEccCccccc---ccCCCCCCCCccEEEcccCcCcccCCh---hhhhcCCCCcEEEcccCccc----ccCChhhc
Q 042632 124 K-LEILFLFNNFLTG---RLHLPDSKRDLLHLVISNNNFIGTLPD---NFGVILPELVYLDMSQNSFV----GSIPPSTG 192 (659)
Q Consensus 124 ~-L~~L~L~~n~i~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~i~----~~~~~~~~ 192 (659)
+ |++|++++|.... .......+++|++|++++|.+++.... .+...+++|++|++++|.++ ..++..+.
T Consensus 138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 5 8888888876211 111122567888888888876554222 13334788888888888776 23344456
Q ss_pred CCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcccc---ccCCcCCCCCCCCCEEEccCCCCCccccccccCCCC
Q 042632 193 YMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFV---GQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPS 269 (659)
Q Consensus 193 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 269 (659)
.+++|++|++++|.+. .+|.. +..+++|+.|+++..... ...+..+..+++|+.|+++++... .++..+..+++
T Consensus 218 ~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~ 294 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQ 294 (592)
T ss_dssp HCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGG
T ss_pred hCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCC
Confidence 7788888888888877 56643 467788888888753322 223344566777777777765433 45666666777
Q ss_pred CcEEEeecccccCCCC-hhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccC-----------CcCcCcCC--CC
Q 042632 270 LYILDVSNNMLSGQLP-HWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISG-----------NKLYGPLE--FS 335 (659)
Q Consensus 270 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~--~~ 335 (659)
|++|++++|.+++... ..+..+++|++|+++++......+.....+++|++|++++ +.+++... ..
T Consensus 295 L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 7777777777653322 3356677777777773322222222234456677777762 33322110 01
Q ss_pred CCCCCCcEEEccCCcCCCCCchhhhc-CCCCceEecC----CCccccc-----CCccccCCCCCcEEEccC
Q 042632 336 SNHSSLRHLFLHNNSLNGNIPHLINE-DSNLRALLLR----GNNLQGN-----IPEPLCHLRKLSIVDISC 396 (659)
Q Consensus 336 ~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~ 396 (659)
..+++|++|+++.+.+++..+..+.. +++|++|+++ .|.+++. ++..+..+++|+.|++++
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 13455666666555555444444433 5556666664 3444432 112234455555555553
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.2e-30 Score=256.20 Aligned_cols=252 Identities=22% Similarity=0.197 Sum_probs=153.7
Q ss_pred CEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCC--CChhhhCCCCCCEEEcc
Q 042632 223 EFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQ--LPHWAGNFSNLDVLLMS 300 (659)
Q Consensus 223 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~ 300 (659)
+.++++++.++.. |..+. +++++|++++|+++...+..|..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4566666666533 32222 4667777777776654444566667777777777766522 24455556666666666
Q ss_pred CCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCC
Q 042632 301 RNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIP 380 (659)
Q Consensus 301 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 380 (659)
+|.+.. .+..+..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.+..+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE----------------------FSVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTT----------------------TTTTTTCTTCCEEECTTSCCEECST
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCccccccc----------------------chhhhhccCCCEEECCCCcCCccch
Confidence 666652 33344455555555555554443222 0345555666666666666665555
Q ss_pred ccccCCCCCcEEEccCCcCCc-ccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccc
Q 042632 381 EPLCHLRKLSIVDISCNNLNG-SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYK 459 (659)
Q Consensus 381 ~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (659)
..+..+++|++|++++|.+++ ..|..+..
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------------------------------------------- 173 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-------------------------------------------------- 173 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTT--------------------------------------------------
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhh--------------------------------------------------
Confidence 566666666666666666654 33444333
Q ss_pred ccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCC-CC
Q 042632 460 GDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELN-YL 538 (659)
Q Consensus 460 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L 538 (659)
+++|+.|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|..+..++ +|
T Consensus 174 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 250 (306)
T 2z66_A 174 ---LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250 (306)
T ss_dssp ---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTC
T ss_pred ---CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccC
Confidence 45666677777777666666677777777777777777766555677777777777777777777777777664 77
Q ss_pred CeEeccCCccccCCC
Q 042632 539 AIFNVSYNDLLGPVP 553 (659)
Q Consensus 539 ~~L~l~~N~l~~~~p 553 (659)
++|++++|+++|.++
T Consensus 251 ~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 251 AFLNLTQNDFACTCE 265 (306)
T ss_dssp CEEECTTCCEECSGG
T ss_pred CEEEccCCCeecccC
Confidence 777777777776543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=258.02 Aligned_cols=202 Identities=18% Similarity=0.153 Sum_probs=110.6
Q ss_pred CCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEE
Q 042632 195 ERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILD 274 (659)
Q Consensus 195 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 274 (659)
+.....+++++.++ .+|..+. ++|++|++++|++.+..+..+.++++|++|++++|.+++..+..|..+++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 33445666666666 6666442 4677777777777666555677777777777777777766666677777777777
Q ss_pred eecccccCCCChhhhCCCCCCEEEccCCcccccCC-ccCCCCCCCcEEEccCCc-CcCcCCC-CCCCCCCcEEEccCCcC
Q 042632 275 VSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVTRILDISGNK-LYGPLEF-SSNHSSLRHLFLHNNSL 351 (659)
Q Consensus 275 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~L~~L~l~~n~l 351 (659)
+++|++++..+..+..+++|++|++++|++..... ..+..+++|++|++++|. +.+..+. ...+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777764444446667777777777776664333 345555666666665552 3222211 11334444444444444
Q ss_pred CCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCC
Q 042632 352 NGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 352 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 4333444444444444444444443221122223444444444444444
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=257.62 Aligned_cols=280 Identities=18% Similarity=0.146 Sum_probs=229.2
Q ss_pred CCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEE
Q 042632 218 GCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVL 297 (659)
Q Consensus 218 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 297 (659)
.|+.....+++++.++. +|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34566678889998885 444443 589999999999997777789999999999999999998888889999999999
Q ss_pred EccCCcccccCCccCCCCCCCcEEEccCCcCcCcCC--CCCCCCCCcEEEccCC-cCCCCCchhhhcCCCCceEecCCCc
Q 042632 298 LMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLE--FSSNHSSLRHLFLHNN-SLNGNIPHLINEDSNLRALLLRGNN 374 (659)
Q Consensus 298 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 374 (659)
++++|++++..+..+..+++|++|++++|++.+... ....+++|++|++++| .+.+..+..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999999997666668899999999999999987655 3448899999999998 4666667788999999999999999
Q ss_pred ccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccc
Q 042632 375 LQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNR 454 (659)
Q Consensus 375 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (659)
+++..|..+..+++|++|++++|.+. .+|..+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~--------------------------------------------- 219 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD--------------------------------------------- 219 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH---------------------------------------------
T ss_pred cCccCHHHHhccccCCeecCCCCccc-cchhhhhh---------------------------------------------
Confidence 99888899999999999999999986 44443221
Q ss_pred cccccccccccccEEEccCCcCcccCChhhh---ccccCCEEeCCCCcCcc----cCCccccccCCCCEEECcCCccccc
Q 042632 455 YESYKGDVLNYMTGLDLSSNELTGDIPSEIG---LLQELHALNLSHNHFSG----SIPRSFSILKMIESMDLSYNELSGR 527 (659)
Q Consensus 455 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ 527 (659)
.+++|+.|++++|++++..+..+. ..+.++.++|+++.+++ .+|+.+..+++|++|++++|+++ .
T Consensus 220 -------~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 220 -------VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp -------HTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred -------hcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 157899999999999976554443 45678888888888875 36778888999999999999998 5
Q ss_pred CChh-hhcCCCCCeEeccCCccccCCCC
Q 042632 528 IPLE-LSELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 528 ~p~~-l~~l~~L~~L~l~~N~l~~~~p~ 554 (659)
+|.. +..+++|++|++++|++.|.+|.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 5655 58899999999999999987663
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.2e-28 Score=248.11 Aligned_cols=276 Identities=21% Similarity=0.226 Sum_probs=168.7
Q ss_pred EEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcc--ccccccCCCCCcEEEee
Q 042632 199 FLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGR--LEEGLLNAPSLYILDVS 276 (659)
Q Consensus 199 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~ 276 (659)
.++++++.++ .+|..+. ++|++|++++|++....+..|.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555555555 5555332 4566666666666654444456666666666666666532 24555566777777777
Q ss_pred cccccCCCChhhhCCCCCCEEEccCCcccccCC-ccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCC
Q 042632 277 NNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNI 355 (659)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 355 (659)
+|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. +..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----------------------VAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-----------------------ECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-----------------------ccc
Confidence 77776 455556677777777777777765443 34555555555555555443 333
Q ss_pred chhhhcCCCCceEecCCCcccc-cCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccccc
Q 042632 356 PHLINEDSNLRALLLRGNNLQG-NIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDAS 434 (659)
Q Consensus 356 ~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (659)
+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------- 197 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS------------------------- 197 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT-------------------------
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC-------------------------
Confidence 4445555666666666666654 35566666666677777766666554555443
Q ss_pred CCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccC-C
Q 042632 435 GRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILK-M 513 (659)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~ 513 (659)
+++|+.|++++|++++..+..+..+++|+.|+|++|++++..|..+..++ +
T Consensus 198 ----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 249 (306)
T 2z66_A 198 ----------------------------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249 (306)
T ss_dssp ----------------------------CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred ----------------------------CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence 45667777777777766566677777777777777777777777777774 7
Q ss_pred CCEEECcCCcccccCC--hhhhcCCCCCeEeccCCccccCCCCC
Q 042632 514 IESMDLSYNELSGRIP--LELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 514 L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
|+.|++++|++++..+ ....-+...+.+.+..+.+.|..|..
T Consensus 250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 7777777777764321 11122333445555666677665543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=253.67 Aligned_cols=251 Identities=20% Similarity=0.208 Sum_probs=219.8
Q ss_pred CCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEcc
Q 042632 245 QLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDIS 324 (659)
Q Consensus 245 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 324 (659)
....++.++..++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+....+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3568888888888 556655 3789999999999998888999999999999999999998888899999999999999
Q ss_pred CCcCcCcCCCC-CCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCC-cccccCCccccCCCCCcEEEccCCcCCcc
Q 042632 325 GNKLYGPLEFS-SNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGN-NLQGNIPEPLCHLRKLSIVDISCNNLNGS 402 (659)
Q Consensus 325 ~n~l~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 402 (659)
+|.+++..+.. ..+++|++|++++|.++...+..|..+++|++|++++| .+....+..|..+++|++|++++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99998776644 48899999999999999777778999999999999994 555455567899999999999999997 4
Q ss_pred cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCCh
Q 042632 403 IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPS 482 (659)
Q Consensus 403 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 482 (659)
+|. +. .+++|+.|+|++|++++..|.
T Consensus 200 ~~~-~~-----------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 200 IPN-LT-----------------------------------------------------PLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCC-CT-----------------------------------------------------TCSSCCEEECTTSCCCEECTT
T ss_pred ccc-cC-----------------------------------------------------CCcccCEEECCCCccCccChh
Confidence 442 22 167899999999999988899
Q ss_pred hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCC
Q 042632 483 EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 483 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 553 (659)
.|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..++.+..+++|+.|++++|++.|.+.
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999889999999999999999999998888888999999999999999998654
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.5e-30 Score=287.42 Aligned_cols=410 Identities=14% Similarity=0.058 Sum_probs=286.4
Q ss_pred cchhhhhCCCCCCEEEccCcccc---ccCc-----------hHHhhcCCCCCEEEccCcccccccCC--CCCCCC-ccEE
Q 042632 89 TIASFLQYQYDLRYIDLSHNNLA---GTIP-----------TWLLQNNTKLEILFLFNNFLTGRLHL--PDSKRD-LLHL 151 (659)
Q Consensus 89 ~~~~~l~~l~~L~~L~Ls~n~l~---~~~~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~~~-L~~L 151 (659)
..+..+..+++|++|+++++... +.+| ..+...+++|++|++++|.+++.... ...++. |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34566778899999999885421 1121 22334789999999999977643111 112334 9999
Q ss_pred EcccCc-CcccCChhhhhcCCCCcEEEcccCccccc----CChhhcCCCCCCEEeCcCCcCc----cccChhhhhCCCCC
Q 042632 152 VISNNN-FIGTLPDNFGVILPELVYLDMSQNSFVGS----IPPSTGYMERLLFLDLSSNNFS----GELPKQFLTGCVSL 222 (659)
Q Consensus 152 ~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L 222 (659)
++++|. +.......+...+++|++|++++|.+++. ++.....+++|++|++++|.+. +.++. ++..+++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCC
Confidence 999886 22111122333489999999999988755 2334567889999999999886 22332 34678999
Q ss_pred CEEEccCccccccCCcCCCCCCCCCEEEccCCCCC---ccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEc
Q 042632 223 EFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFT---GRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLM 299 (659)
Q Consensus 223 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 299 (659)
++|++++|.+.+ .+..+..+++|++|+++..... ...+..+..+++|+.++++++... .+|..+..+++|++|++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~L 300 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDL 300 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEec
Confidence 999999998876 4466788899999999864322 233456677889999999886443 66777888899999999
Q ss_pred cCCcccccCC-ccCCCCCCCcEEEccCCcCcC-cCCCC-CCCCCCcEEEccC-----------CcCCCCC-chhhhcCCC
Q 042632 300 SRNSLEGDVS-VPLSNLQVTRILDISGNKLYG-PLEFS-SNHSSLRHLFLHN-----------NSLNGNI-PHLINEDSN 364 (659)
Q Consensus 300 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~-~~~~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~ 364 (659)
++|.+.+... ..+..+++|++|+++ +.+.. ..+.. ..+++|++|++++ +.+++.. +.....+++
T Consensus 301 s~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 301 LYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred CCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 9998764433 335788999999998 33332 22222 2578899999993 4555332 223456899
Q ss_pred CceEecCCCcccccCCccccC-CCCCcEEEcc----CCcCCcccch-hhccccccccccCCCCCceeeccccccccCCcc
Q 042632 365 LRALLLRGNNLQGNIPEPLCH-LRKLSIVDIS----CNNLNGSIPS-CFTNISLWMEESDSFNGFVIWHGILLDASGRRL 438 (659)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (659)
|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++...+ .+...
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~---------------------------- 431 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL---------------------------- 431 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH----------------------------
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH----------------------------
Confidence 999999888888766666655 8899999996 5666642111 11110
Q ss_pred cccccccceEeeeccccccccccccccccEEEccCCc--CcccCChhhhc-cccCCEEeCCCCcCccc-CCccccccCCC
Q 042632 439 SRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNE--LTGDIPSEIGL-LQELHALNLSHNHFSGS-IPRSFSILKMI 514 (659)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 514 (659)
...+++|+.|++++|. +++..+..+.. +++|++|+|++|++++. ++..+..+++|
T Consensus 432 ---------------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 432 ---------------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ---------------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred ---------------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCccc
Confidence 0126789999998654 77665555554 88999999999999863 45556788999
Q ss_pred CEEECcCCccccc-CChhhhcCCCCCeEeccCCccccC
Q 042632 515 ESMDLSYNELSGR-IPLELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 515 ~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
++|++++|.+++. ++.....+++|++|++++|+++..
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9999999998755 444556799999999999998764
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.4e-27 Score=252.01 Aligned_cols=249 Identities=19% Similarity=0.158 Sum_probs=147.0
Q ss_pred CEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCC
Q 042632 223 EFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRN 302 (659)
Q Consensus 223 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 302 (659)
..++.++..+.. +|..+. +++++|++++|++++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 57 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 445555555443 222222 34555555555555554555555555555555555555444445555555555555555
Q ss_pred cccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCC-CcccccCCc
Q 042632 303 SLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRG-NNLQGNIPE 381 (659)
Q Consensus 303 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 381 (659)
.+....+..|.. +++|++|++++|.++...+..+..+++|++|++++ +.+....+.
T Consensus 134 ~l~~~~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 134 WLTVIPSGAFEY-----------------------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp CCSBCCTTTSSS-----------------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred cCCccChhhhcc-----------------------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 554443334444 44555555555555544444556666666666666 334433334
Q ss_pred cccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccc
Q 042632 382 PLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGD 461 (659)
Q Consensus 382 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (659)
.+..+++|+.|++++|++++ +|. +.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~-~~~-~~----------------------------------------------------- 215 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD-MPN-LT----------------------------------------------------- 215 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS-CCC-CT-----------------------------------------------------
T ss_pred hccCCCCCCEEECCCCcccc-ccc-cc-----------------------------------------------------
Confidence 56666677777777776653 221 11
Q ss_pred ccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeE
Q 042632 462 VLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIF 541 (659)
Q Consensus 462 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 541 (659)
.+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..++.+..+++|+.|
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEE
T ss_pred ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEE
Confidence 15567777777777776667777777777777777777776667777777777777777777776666666777777777
Q ss_pred eccCCccccCC
Q 042632 542 NVSYNDLLGPV 552 (659)
Q Consensus 542 ~l~~N~l~~~~ 552 (659)
++++|++.|.+
T Consensus 296 ~L~~Np~~CdC 306 (452)
T 3zyi_A 296 HLHHNPWNCDC 306 (452)
T ss_dssp ECCSSCEECST
T ss_pred EccCCCcCCCC
Confidence 77777776643
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=251.40 Aligned_cols=248 Identities=23% Similarity=0.176 Sum_probs=217.7
Q ss_pred CCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEcc
Q 042632 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMS 300 (659)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 300 (659)
..+.++.++..+.. +|..+. ++++.|++++|+++...+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45678888888874 444443 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCc-CCCCCchhhhcCCCCceEecCCCccccc
Q 042632 301 RNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNS-LNGNIPHLINEDSNLRALLLRGNNLQGN 378 (659)
Q Consensus 301 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 378 (659)
+|+++...+..|..+++|++|++++|.+....+... .+++|++|++++|. +....+..|..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997777789999999999999999987666444 89999999999954 55444457899999999999999998 4
Q ss_pred CCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccc
Q 042632 379 IPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESY 458 (659)
Q Consensus 379 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (659)
+| .+..+++|+.|++++|++++..|..|.+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------- 229 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------------------------------- 229 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTT-------------------------------------------------
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhcc-------------------------------------------------
Confidence 55 4888999999999999999777777765
Q ss_pred cccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 459 KGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 459 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 230 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 230 ----LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ----CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ----CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 6789999999999999989999999999999999999998888889999999999999999863
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-27 Score=253.79 Aligned_cols=230 Identities=21% Similarity=0.192 Sum_probs=184.9
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEec
Q 042632 292 SNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLL 370 (659)
Q Consensus 292 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 370 (659)
+++++|++++|.+.+..+..|..+++|++|++++|.+.+..+... .+++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 345555555555555555555555566666666665555443322 5667777777777777666677889999999999
Q ss_pred CCCcccccCCccccCCCCCcEEEccCCcCCcccch-hhccccccccccCCCCCceeeccccccccCCcccccccccceEe
Q 042632 371 RGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPS-CFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKF 449 (659)
Q Consensus 371 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (659)
++|+++...+..+..+++|+.|++++|+..+.++. .|.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~---------------------------------------- 194 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG---------------------------------------- 194 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT----------------------------------------
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC----------------------------------------
Confidence 99999977778899999999999999654444443 3433
Q ss_pred eeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCC
Q 042632 450 MAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIP 529 (659)
Q Consensus 450 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 529 (659)
+++|+.|++++|++++ +| .+..+++|++|+|++|++++..|..|..+++|+.|++++|.+++..|
T Consensus 195 -------------l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 195 -------------LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp -------------CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred -------------CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 6789999999999995 45 58899999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 530 LELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 530 ~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
..|..+++|+.|++++|++++.++.. ..++.++.+++++|||.|+|.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999999876655 668889999999999999875
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.6e-28 Score=241.80 Aligned_cols=250 Identities=20% Similarity=0.170 Sum_probs=154.0
Q ss_pred CEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCC
Q 042632 247 AWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGN 326 (659)
Q Consensus 247 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 326 (659)
++++.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l----------- 79 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL----------- 79 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCc-----------
Confidence 455555555552 23322 3455555555555554444445555555555555555554444444444
Q ss_pred cCcCcCCCCCCCCCCcEEEccCCc-CCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccch
Q 042632 327 KLYGPLEFSSNHSSLRHLFLHNNS-LNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPS 405 (659)
Q Consensus 327 ~l~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 405 (659)
++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 80 ------------~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 80 ------------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp ------------TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ------------cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 455555555554 4444455666667777777777777665566666777777777777777644444
Q ss_pred hhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhh
Q 042632 406 CFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIG 485 (659)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 485 (659)
.+.. +++|+.|++++|++++..+..+.
T Consensus 148 ~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 148 TFRD-----------------------------------------------------LGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp TTTT-----------------------------------------------------CTTCCEEECCSSCCCEECTTTTT
T ss_pred Hhcc-----------------------------------------------------CCCccEEECCCCcccccCHHHhc
Confidence 4433 45677777777777755555677
Q ss_pred ccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCc
Q 042632 486 LLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENN 565 (659)
Q Consensus 486 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~ 565 (659)
.+++|++|++++|++++..|..|..+++|+.|++++|.+++..++.+..+++|+.|++++|++.+..+....+..+....
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~ 254 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcc
Confidence 77777777777777777777777777777788888777776655667777778888888887777555433333344444
Q ss_pred cCCCCCCCCC
Q 042632 566 YRGNPLLCGP 575 (659)
Q Consensus 566 ~~~N~~~c~~ 575 (659)
...+...|..
T Consensus 255 ~~~~~~~c~~ 264 (285)
T 1ozn_A 255 GSSSEVPCSL 264 (285)
T ss_dssp SEECCCBEEE
T ss_pred cccCccccCC
Confidence 4555555543
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-29 Score=253.91 Aligned_cols=267 Identities=18% Similarity=0.169 Sum_probs=189.5
Q ss_pred CCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEee
Q 042632 197 LLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVS 276 (659)
Q Consensus 197 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 276 (659)
++..+++.+.+. ..+..++..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344566666665 4455555556666666666666666555556666666666666666654333 5555566666666
Q ss_pred cccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCc
Q 042632 277 NNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIP 356 (659)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 356 (659)
+|.+++.. .. ++|++|++++|.+++..+. .+++|++|++++|++++..+
T Consensus 89 ~n~l~~l~-----~~------------------------~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 89 NNYVQELL-----VG------------------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SSEEEEEE-----EC------------------------TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGG
T ss_pred CCcccccc-----CC------------------------CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccc
Confidence 55554211 12 4455555555555443222 24668888888888887667
Q ss_pred hhhhcCCCCceEecCCCcccccCCccc-cCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccC
Q 042632 357 HLINEDSNLRALLLRGNNLQGNIPEPL-CHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASG 435 (659)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (659)
..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. |...
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~---------------------------- 188 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQV---------------------------- 188 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCC----------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cccc----------------------------
Confidence 778888999999999999987766666 4688999999999998743 2110
Q ss_pred CcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCC
Q 042632 436 RRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIE 515 (659)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 515 (659)
.+++|+.|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|+
T Consensus 189 --------------------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 189 --------------------------VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp --------------------------CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred --------------------------ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 15789999999999995 4556999999999999999999 5788899999999
Q ss_pred EEECcCCccc-ccCChhhhcCCCCCeEecc-CCccccCCCC
Q 042632 516 SMDLSYNELS-GRIPLELSELNYLAIFNVS-YNDLLGPVPN 554 (659)
Q Consensus 516 ~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~-~N~l~~~~p~ 554 (659)
.|++++|++. +.+|..+..+++|+.++++ .+.+++..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999998 7888899999999999998 4556665443
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.9e-28 Score=242.90 Aligned_cols=236 Identities=19% Similarity=0.213 Sum_probs=190.6
Q ss_pred CCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEE
Q 042632 243 LTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILD 322 (659)
Q Consensus 243 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 322 (659)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467888888888888 56677777888888888888888 77777888888888888888887 5677777777888888
Q ss_pred ccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcc
Q 042632 323 ISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGS 402 (659)
Q Consensus 323 l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 402 (659)
+++|.+.+..+... ... ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++
T Consensus 157 L~~n~~~~~~p~~~-----~~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 157 IRACPELTELPEPL-----AST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEEETTCCCCCSCS-----EEE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCCccccChhH-----hhc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 87776655444321 111 11233566889999999999988 778888899999999999999884
Q ss_pred cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCCh
Q 042632 403 IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPS 482 (659)
Q Consensus 403 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 482 (659)
+|..+.. +++|+.|++++|++.+.+|.
T Consensus 221 l~~~l~~-----------------------------------------------------l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 221 LGPAIHH-----------------------------------------------------LPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp CCGGGGG-----------------------------------------------------CTTCCEEECTTCTTCCBCCC
T ss_pred Cchhhcc-----------------------------------------------------CCCCCEEECcCCcchhhhHH
Confidence 5555544 67899999999999989999
Q ss_pred hhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc
Q 042632 483 EIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 483 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
.++.+++|++|+|++|++.+.+|..+..+++|+.|+|++|++.+.+|+.+.++++|+.+++..|.+..
T Consensus 248 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999988776554
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3.5e-27 Score=234.66 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=61.2
Q ss_pred CEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeec
Q 042632 198 LFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSN 277 (659)
Q Consensus 198 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 277 (659)
+.++.+++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34444444444 444322 23455555555555544444455555555555555555544444555555555555555
Q ss_pred cc-ccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcC
Q 042632 278 NM-LSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKL 328 (659)
Q Consensus 278 n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 328 (659)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence 54 4433344455555555555555555444444444444444444444433
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3e-27 Score=239.37 Aligned_cols=236 Identities=19% Similarity=0.192 Sum_probs=203.7
Q ss_pred CCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEE
Q 042632 218 GCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVL 297 (659)
Q Consensus 218 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 297 (659)
..+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 56777888999999999999999 78889999999999999999999 789999999999999
Q ss_pred EccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccc
Q 042632 298 LMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQG 377 (659)
Q Consensus 298 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 377 (659)
++++|.+.+..|..+... .+. .....+++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~~~--------~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------DAS--------GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C-C--------CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc------cch--------hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999998887787765431 111 11225678888888888888 77888899999999999999998
Q ss_pred cCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccc
Q 042632 378 NIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYES 457 (659)
Q Consensus 378 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (659)
.+|..+..+++|++|++++|++.+.+|..+..
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------ 251 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------ 251 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------------------------------------------------
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcC------------------------------------------------
Confidence 46667889999999999999998888877765
Q ss_pred ccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 458 YKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 458 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
+++|+.|++++|++.+.+|..++.+++|++|+|++|++.+.+|+.++.+++|+.+++..+.+.
T Consensus 252 -----l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 252 -----RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp -----CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred -----CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 678999999999999899999999999999999999999999999999999999999887765
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.4e-29 Score=279.78 Aligned_cols=448 Identities=15% Similarity=0.086 Sum_probs=256.4
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCC---C-----------hhhhcCCCCCCEEEccCcccccccChhh
Q 042632 9 ELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSL---P-----------ISVFANLTSLEYLSLSDKKFQGSFSLSV 74 (659)
Q Consensus 9 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l---~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 74 (659)
.++++++... .....+.++++|++|++++|.....+ | ......+++|++|++++|.+++.
T Consensus 47 ~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~----- 120 (594)
T 2p1m_B 47 KVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD----- 120 (594)
T ss_dssp EEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-----
T ss_pred EEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-----
Confidence 4455444322 22234566777788887776522111 1 02234567777887777765532
Q ss_pred hccCCCCccccccccchhhhh-CCCCCCEEEccCc-cccccCchHHhhcCCCCCEEEccCcccccc-----cCCCCCCCC
Q 042632 75 LANHSRLEHCNISGTIASFLQ-YQYDLRYIDLSHN-NLAGTIPTWLLQNNTKLEILFLFNNFLTGR-----LHLPDSKRD 147 (659)
Q Consensus 75 ~~~l~~L~~~~l~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~-----~~~~~~~~~ 147 (659)
.+..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++. ......+++
T Consensus 121 ---------------~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 121 ---------------CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp ---------------HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred ---------------HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 223333 5677888888777 444322333444677888888877776542 223345667
Q ss_pred ccEEEcccCc--CcccCChhhhhcCCCCcEEEcccC-cccccCChhhcCCCCCCEEeCcCCc-------CccccChhhhh
Q 042632 148 LLHLVISNNN--FIGTLPDNFGVILPELVYLDMSQN-SFVGSIPPSTGYMERLLFLDLSSNN-------FSGELPKQFLT 217 (659)
Q Consensus 148 L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~ 217 (659)
|++|++++|. +.......+...+++|++|++++| .+. .++..+..+++|++|+++.+. +. .++.. +.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~-l~ 262 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA-LS 262 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH-HH
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHH-Hh
Confidence 7777777775 221111222223577777777777 333 356666677777777754432 33 23333 36
Q ss_pred CCCCCCEE-EccCccccccCCcCCCCCCCCCEEEccCCCCCcccc-ccccCCCCCcEEEeecccccCC-CChhhhCCCCC
Q 042632 218 GCVSLEFM-NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLE-EGLLNAPSLYILDVSNNMLSGQ-LPHWAGNFSNL 294 (659)
Q Consensus 218 ~l~~L~~L-~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 294 (659)
++++|+.+ .+.+... ...+..+..+++|++|++++|.+++... ..+..+++|++|++++| +.+. ++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 67777776 3332221 1222223355667777777776553322 22445667777777666 3211 12222345666
Q ss_pred CEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCC--CCCCCCCCcEEEccCCcCCCCCchhhh-cCCCCceEecC
Q 042632 295 DVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLE--FSSNHSSLRHLFLHNNSLNGNIPHLIN-EDSNLRALLLR 371 (659)
Q Consensus 295 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~ 371 (659)
++|++.++.-.+ ....+.+++... ....+++|+.|.++.+.+++..+..+. .+++|++|+++
T Consensus 341 ~~L~L~~~~~~g---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 341 RELRVFPSEPFV---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CEEEEECSCTTC---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CEEEEecCcccc---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 666664432000 001122221100 001356777777777777655444554 57888888888
Q ss_pred --C----Cccccc-----CCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccc
Q 042632 372 --G----NNLQGN-----IPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSR 440 (659)
Q Consensus 372 --~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (659)
+ +.+++. ++..+..+++|+.|++++ .+++..+..+..
T Consensus 406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~------------------------------- 453 (594)
T 2p1m_B 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT------------------------------- 453 (594)
T ss_dssp ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH-------------------------------
T ss_pred cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH-------------------------------
Confidence 3 455421 112256678899999977 555433333322
Q ss_pred cccccceEeeeccccccccccccccccEEEccCCcCcccCChhh-hccccCCEEeCCCCcCcccCCc-cccccCCCCEEE
Q 042632 441 IKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEI-GLLQELHALNLSHNHFSGSIPR-SFSILKMIESMD 518 (659)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ 518 (659)
.+++|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|+.|+
T Consensus 454 ---------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 454 ---------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp ---------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred ---------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 15678999999999876655555 6789999999999998654443 445688999999
Q ss_pred CcCCcccccCChhh-hcCCCCCeEeccCCcccc
Q 042632 519 LSYNELSGRIPLEL-SELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 519 Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~~ 550 (659)
+++|+++......+ ..++.|+...+..+.-..
T Consensus 513 l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~ 545 (594)
T 2p1m_B 513 MSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD 545 (594)
T ss_dssp EESSCCBHHHHHHHHHHCTTEEEEEECSSSCGG
T ss_pred eeCCCCCHHHHHHHHHhCCCCEEEEecCCCccc
Confidence 99999865555555 567888777777665433
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.3e-26 Score=248.18 Aligned_cols=268 Identities=24% Similarity=0.240 Sum_probs=153.8
Q ss_pred CCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEE
Q 042632 171 PELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLY 250 (659)
Q Consensus 171 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 250 (659)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++.. |. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEE
Confidence 35778888888877 5666554 67888888888777 6665 457777777777777642 22 556777777
Q ss_pred ccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcC
Q 042632 251 LSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYG 330 (659)
Q Consensus 251 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 330 (659)
+++|.+++. |. .+++|+.|++++|+++. +|.. +++|++|++++|.+.+. |. ...+|+.|++++|.+++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 777777643 32 45667777777777663 3432 36666777776666532 22 23456666666666654
Q ss_pred cCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccc
Q 042632 331 PLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNI 410 (659)
Q Consensus 331 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 410 (659)
.. ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +|..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~~---- 239 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---- 239 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCCC----
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCCC----
Confidence 32 234556666666665553 222 1345555666655555 23321 2455555555555542 2210
Q ss_pred cccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccC
Q 042632 411 SLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQEL 490 (659)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 490 (659)
+++|+.|++++|+++ .+|. .+++|
T Consensus 240 ----------------------------------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L 263 (622)
T 3g06_A 240 ----------------------------------------------------PSELKELMVSGNRLT-SLPM---LPSGL 263 (622)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred ----------------------------------------------------CCcCcEEECCCCCCC-cCCc---ccccC
Confidence 344555555555555 3333 34555
Q ss_pred CEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcC
Q 042632 491 HALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSEL 535 (659)
Q Consensus 491 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 535 (659)
+.|+|++|+++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 55555555555 445555555555555555555555555544443
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.4e-26 Score=248.10 Aligned_cols=263 Identities=27% Similarity=0.285 Sum_probs=192.7
Q ss_pred CCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEE
Q 042632 195 ERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILD 274 (659)
Q Consensus 195 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 274 (659)
.+++.|++++|.++ .+|..+. ++|++|++++|.++.. |. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35788888888887 7777553 6888888888888743 33 46788888888888874 443 568888888
Q ss_pred eecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCC
Q 042632 275 VSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGN 354 (659)
Q Consensus 275 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~ 354 (659)
+++|.+++ +|. .+++|+.|++++|+++. +|.. +++|++|++++|.+++... .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-
Confidence 88888874 343 46778888888888874 3432 3778888888888775432 35678888888888874
Q ss_pred CchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccccc
Q 042632 355 IPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDAS 434 (659)
Q Consensus 355 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (659)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---------------------------- 219 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---------------------------- 219 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC----------------------------
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC----------------------------
Confidence 44 456788888888888874 4432 467888888888876 33321
Q ss_pred CCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCC
Q 042632 435 GRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMI 514 (659)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 514 (659)
+++|+.|++++|++++ +| ..+++|+.|+|++|+++ .+|. .+++|
T Consensus 220 ----------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L 263 (622)
T 3g06_A 220 ----------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGL 263 (622)
T ss_dssp ----------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred ----------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccC
Confidence 3568888888888884 55 45577888888888887 4555 56788
Q ss_pred CEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCC
Q 042632 515 ESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 515 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 554 (659)
+.|+|++|.++ .+|..+.++++|+.|++++|++++.+|.
T Consensus 264 ~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 264 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred cEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 88888888888 7788888888888888888888876554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.1e-28 Score=245.03 Aligned_cols=268 Identities=21% Similarity=0.201 Sum_probs=198.3
Q ss_pred CCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEc
Q 042632 172 ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYL 251 (659)
Q Consensus 172 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 251 (659)
.++..+++.+.+.......+..+++|++|++++|.++ .++...+..+++|++|++++|++.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4566677788776555555667789999999999998 6666667899999999999999987654 889999999999
Q ss_pred cCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCc
Q 042632 252 SDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGP 331 (659)
Q Consensus 252 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 331 (659)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++.+..+..+..+++|++|++
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L-------- 151 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL-------- 151 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC--------
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC--------
Confidence 999988543 348999999999999855433 2466777777777776555555555555555554
Q ss_pred CCCCCCCCCCcEEEccCCcCCCCCchhh-hcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccc
Q 042632 332 LEFSSNHSSLRHLFLHNNSLNGNIPHLI-NEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNI 410 (659)
Q Consensus 332 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 410 (659)
++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ +|..+..
T Consensus 152 ---------------s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~- 212 (317)
T 3o53_A 152 ---------------KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQS- 212 (317)
T ss_dssp ---------------TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGG-
T ss_pred ---------------CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcc-
Confidence 5555544444444 3577888888888888754 2 23347888888888888874 3433443
Q ss_pred cccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccC
Q 042632 411 SLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQEL 490 (659)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 490 (659)
+++|+.|++++|+++ .+|..+..+++|
T Consensus 213 ----------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 213 ----------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp ----------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTTC
T ss_pred ----------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCCC
Confidence 567888888888888 567778888889
Q ss_pred CEEeCCCCcCc-ccCCccccccCCCCEEECcCC-cccccCCh
Q 042632 491 HALNLSHNHFS-GSIPRSFSILKMIESMDLSYN-ELSGRIPL 530 (659)
Q Consensus 491 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~ 530 (659)
+.|++++|+++ +..|..+..++.|+.|++++| .+.+..|.
T Consensus 240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999888 677788888888888888854 45554443
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.6e-28 Score=247.41 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=165.7
Q ss_pred CCCCCEEEccCCCCCccccccccCCCCCcEEEeeccccc-CCCChhhh-------CCCCCCEEEccCCcccccCCccC--
Q 042632 243 LTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLS-GQLPHWAG-------NFSNLDVLLMSRNSLEGDVSVPL-- 312 (659)
Q Consensus 243 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~l-- 312 (659)
.++|++|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|.+.+..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 333333322 556666666653 23444333 46666666666666665555554
Q ss_pred CCCCCCcEEEccCCcCcCcCCCCCC-----CCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCccccc--CCccc--
Q 042632 313 SNLQVTRILDISGNKLYGPLEFSSN-----HSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGN--IPEPL-- 383 (659)
Q Consensus 313 ~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~-- 383 (659)
..+++|++|++++|.+++....... +++|++|++++|++++..+..++.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 5666666666666666655211112 27788888888888877777888888888888888887654 23333
Q ss_pred cCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccc
Q 042632 384 CHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVL 463 (659)
Q Consensus 384 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 463 (659)
..+++|++|++++|++++ ++.....+. ..+
T Consensus 198 ~~l~~L~~L~L~~N~l~~-~~~~~~~~~-------------------------------------------------~~l 227 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMET-PSGVCSALA-------------------------------------------------AAR 227 (312)
T ss_dssp TSCTTCCEEECTTSCCCC-HHHHHHHHH-------------------------------------------------HTT
T ss_pred ccCCCCCEEECCCCcCcc-hHHHHHHHH-------------------------------------------------hcC
Confidence 778888888888888873 221110000 115
Q ss_pred ccccEEEccCCcCcccCC-hhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 464 NYMTGLDLSSNELTGDIP-SEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 464 ~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
++|+.|++++|++++..| ..+..+++|++|+|++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence 678888888888887664 45667788888888888888 6777665 7888888888888855 65 78888888888
Q ss_pred ccCCcccc
Q 042632 543 VSYNDLLG 550 (659)
Q Consensus 543 l~~N~l~~ 550 (659)
+++|++++
T Consensus 303 L~~N~l~~ 310 (312)
T 1wwl_A 303 LKGNPFLD 310 (312)
T ss_dssp CTTCTTTC
T ss_pred ccCCCCCC
Confidence 88888876
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-27 Score=253.45 Aligned_cols=234 Identities=19% Similarity=0.154 Sum_probs=146.8
Q ss_pred CCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEcc
Q 042632 245 QLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDIS 324 (659)
Q Consensus 245 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 324 (659)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44444444444444444444444444444444444443322 4444555555555555443221 1455666666
Q ss_pred CCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCcccc-CCCCCcEEEccCCcCCccc
Q 042632 325 GNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLC-HLRKLSIVDISCNNLNGSI 403 (659)
Q Consensus 325 ~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~ 403 (659)
+|.+.+..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|+|++|.+++..
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6655543332 345677777777777766677777778888888888888776666665 6778888888888776431
Q ss_pred chhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChh
Q 042632 404 PSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSE 483 (659)
Q Consensus 404 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 483 (659)
+.. .+++|+.|+|++|++++. |..
T Consensus 186 ~~~-------------------------------------------------------~l~~L~~L~Ls~N~l~~~-~~~ 209 (487)
T 3oja_A 186 GQV-------------------------------------------------------VFAKLKTLDLSSNKLAFM-GPE 209 (487)
T ss_dssp CCC-------------------------------------------------------CCTTCCEEECCSSCCCEE-CGG
T ss_pred ccc-------------------------------------------------------cCCCCCEEECCCCCCCCC-CHh
Confidence 111 156777888888888754 444
Q ss_pred hhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc-ccCChhhhcCCCCCeEecc
Q 042632 484 IGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS-GRIPLELSELNYLAIFNVS 544 (659)
Q Consensus 484 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~l~ 544 (659)
+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 210 ~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 7777888888888888873 6667777788888888888776 5666667777777666665
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.3e-29 Score=275.87 Aligned_cols=407 Identities=16% Similarity=0.104 Sum_probs=271.5
Q ss_pred hhhhhCCCCCCEEEccCccccccC---c-----------hHHhhcCCCCCEEEccCcccccccC--CCCCCCCccEEEcc
Q 042632 91 ASFLQYQYDLRYIDLSHNNLAGTI---P-----------TWLLQNNTKLEILFLFNNFLTGRLH--LPDSKRDLLHLVIS 154 (659)
Q Consensus 91 ~~~l~~l~~L~~L~Ls~n~l~~~~---~-----------~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~L~~L~l~ 154 (659)
...+..+++|++|+++++.....+ | ..+...+++|++|++++|.+++... ....+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 345677888999999987532111 1 2234578899999999888764321 11147889999998
Q ss_pred cC-cCcccCChhhhhcCCCCcEEEcccCcccccCChhhc----CCCCCCEEeCcCCc--CccccChhhhhCCCCCCEEEc
Q 042632 155 NN-NFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTG----YMERLLFLDLSSNN--FSGELPKQFLTGCVSLEFMNL 227 (659)
Q Consensus 155 ~n-~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l 227 (659)
+| .+.......+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 88 444332334444588999999999987755444443 56789999999886 221111223345789999999
Q ss_pred cCccccccCCcCCCCCCCCCEEEccCCC-------CCccccccccCCCCCcEE-EeecccccCCCChhhhCCCCCCEEEc
Q 042632 228 SHNLFVGQIFPKYMNLTQLAWLYLSDNQ-------FTGRLEEGLLNAPSLYIL-DVSNNMLSGQLPHWAGNFSNLDVLLM 299 (659)
Q Consensus 228 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~l 299 (659)
++|...+..+..+..+++|++|+++.+. +. ..+..+..+++|+.+ .+.+... +.++..+..+++|++|++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEEC
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEc
Confidence 9883322355566778889999866553 22 234467788888888 3433322 244555557789999999
Q ss_pred cCCcccccCC-ccCCCCCCCcEEEccCCcCcCc-CCCCC-CCCCCcEEEccC---------CcCCCCCchhh-hcCCCCc
Q 042632 300 SRNSLEGDVS-VPLSNLQVTRILDISGNKLYGP-LEFSS-NHSSLRHLFLHN---------NSLNGNIPHLI-NEDSNLR 366 (659)
Q Consensus 300 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~-~~~~~-~~~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~ 366 (659)
++|.+..... ..+..+++|++|++++| +... .+... .+++|++|++++ +.+++.....+ ..+++|+
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 9988664322 22567889999999988 3321 11111 478899998843 44443322333 3488999
Q ss_pred eEecCCCcccccCCcccc-CCCCCcEEEcc--C----CcCCcccc-hhhccccccccccCCCCCceeeccccccccCCcc
Q 042632 367 ALLLRGNNLQGNIPEPLC-HLRKLSIVDIS--C----NNLNGSIP-SCFTNISLWMEESDSFNGFVIWHGILLDASGRRL 438 (659)
Q Consensus 367 ~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----n~l~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (659)
+|.+..|.+++..+..+. .+++|+.|+++ + +.+++... ..+..+
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l---------------------------- 427 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI---------------------------- 427 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH----------------------------
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH----------------------------
Confidence 998888888765555554 57899999998 3 44442111 111110
Q ss_pred cccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhc-cccCCEEeCCCCcCcccCCccc-cccCCCCE
Q 042632 439 SRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGL-LQELHALNLSHNHFSGSIPRSF-SILKMIES 516 (659)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~ 516 (659)
...+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++
T Consensus 428 ---------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 428 ---------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp ---------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred ---------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 01267899999988 777666666665 8999999999999986665555 67899999
Q ss_pred EECcCCcccccCCh-hhhcCCCCCeEeccCCcccc
Q 042632 517 MDLSYNELSGRIPL-ELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 517 L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~~ 550 (659)
|++++|.+++..+. ....+++|+.|++++|+++.
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 99999999765544 34558999999999998843
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=253.97 Aligned_cols=246 Identities=20% Similarity=0.161 Sum_probs=206.3
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEE
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLF 345 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 345 (659)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+. ++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 44589999999999998888899999999999999999987655 89999999999999999875543 7999999
Q ss_pred ccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 346 LHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 346 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
+++|.+++..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 999999876554 4689999999999999888888999999999999999999877776642
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 505 (659)
.+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+++. |
T Consensus 167 ------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~ 207 (487)
T 3oja_A 167 ------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-G 207 (487)
T ss_dssp ------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-C
T ss_pred ------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-C
Confidence 16789999999999996633 44699999999999999964 4
Q ss_pred ccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc-CCCCC-CCCCCCCcCccC-------CCCCCCCCC
Q 042632 506 RSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG-PVPNS-RQFANFDENNYR-------GNPLLCGPP 576 (659)
Q Consensus 506 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~-~~p~~-~~~~~l~~~~~~-------~N~~~c~~~ 576 (659)
..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+ .+|.. ..++.+..+.+. +|++.|.++
T Consensus 208 ~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 559999999999999999994 78889999999999999999983 33322 344444444543 788888665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.9e-27 Score=238.16 Aligned_cols=244 Identities=22% Similarity=0.187 Sum_probs=138.2
Q ss_pred CccEEEcccCcCcccCChhhhhcCCCCcEEEcccCccc-ccCChhhc-------CCCCCCEEeCcCCcCccccChhhh-h
Q 042632 147 DLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFV-GSIPPSTG-------YMERLLFLDLSSNNFSGELPKQFL-T 217 (659)
Q Consensus 147 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~-~ 217 (659)
+|+.+++++|.+ .+|..+.. .|++|++++|.+. ..+|..+. .+++|++|++++|.+++.+|..++ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 344444555554 44444433 1555555555552 23333333 455555555555555544554432 4
Q ss_pred CCCCCCEEEccCccccccCCcCCCCC-----CCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCC--CChhh--
Q 042632 218 GCVSLEFMNLSHNLFVGQIFPKYMNL-----TQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQ--LPHWA-- 288 (659)
Q Consensus 218 ~l~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l-- 288 (659)
.+++|++|++++|++.+. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 555555555555555544 3434333 5566666666665555555555566666666666654432 12222
Q ss_pred hCCCCCCEEEccCCccccc---CCccCCCCCCCcEEEccCCcCcCcCC--CCCCCCCCcEEEccCCcCCCCCchhhhcCC
Q 042632 289 GNFSNLDVLLMSRNSLEGD---VSVPLSNLQVTRILDISGNKLYGPLE--FSSNHSSLRHLFLHNNSLNGNIPHLINEDS 363 (659)
Q Consensus 289 ~~l~~L~~L~l~~n~l~~~---~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 363 (659)
..+++|++|++++|++.+. ....+..+++|++|++++|.+.+..+ ....+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 5556666666666665521 11223455666666666666665442 2225677777777777777 5566554 7
Q ss_pred CCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc
Q 042632 364 NLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG 401 (659)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 401 (659)
+|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 788888888888755 55 7778888888888888764
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=9.5e-25 Score=215.95 Aligned_cols=209 Identities=22% Similarity=0.237 Sum_probs=146.6
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCC-CCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecC
Q 042632 293 NLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEF-SSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLR 371 (659)
Q Consensus 293 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 371 (659)
++++|++++|.+.+..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 455555555555544444455555555555555555443332 2255666666666666665556677777888888888
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcCCcc-cchhhccccccccccCCCCCceeeccccccccCCcccccccccceEee
Q 042632 372 GNNLQGNIPEPLCHLRKLSIVDISCNNLNGS-IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFM 450 (659)
Q Consensus 372 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (659)
+|.+.+..+..+..+++|++|++++|.+++. +|..+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 8888766666677888888888888888753 4666554
Q ss_pred eccccccccccccccccEEEccCCcCcccCChhhhccccCC----EEeCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 451 AKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELH----ALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 451 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
+++|+.|++++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|++|++++|.+++
T Consensus 148 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 148 ------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKS 214 (276)
T ss_dssp ------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSC
T ss_pred ------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceee
Confidence 56788888888888877777777777777 888999999865555554 4479999999999886
Q ss_pred cCChhhhcCCCCCeEeccCCccccCCCCC
Q 042632 527 RIPLELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 527 ~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
..+..+..+++|+.|++++|+++|.+|..
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cCHhHhcccccccEEEccCCcccccCCch
Confidence 66666788899999999999998876644
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.5e-24 Score=215.26 Aligned_cols=203 Identities=23% Similarity=0.188 Sum_probs=107.4
Q ss_pred hhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCC-CCCCCCCcEEEccCCcCCCCCchhhhcCCCCc
Q 042632 288 AGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEF-SSNHSSLRHLFLHNNSLNGNIPHLINEDSNLR 366 (659)
Q Consensus 288 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 366 (659)
++.++++++++++++.++. +|..+. +.++.|++++|.+++..+. +..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 3455666666666666652 333332 4555666666665544332 2255555555555555553221 14455555
Q ss_pred eEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccc
Q 042632 367 ALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSR 446 (659)
Q Consensus 367 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (659)
+|++++|+++ .+|..+..+++|++|++++|++++..|..|..
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------- 122 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------- 122 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-------------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC-------------------------------------
Confidence 5555555555 44445555555555555555555443333333
Q ss_pred eEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccc
Q 042632 447 NKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 447 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 123 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 123 ----------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ----------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 345555555555555444444555555555555555555444444555555555555555555
Q ss_pred cCChhhhcCCCCCeEeccCCcccc
Q 042632 527 RIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 527 ~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
.+|..+..+++|+.+++++|++.|
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCeEEeCCCCccC
Confidence 445555555555555555555554
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.9e-24 Score=210.60 Aligned_cols=205 Identities=23% Similarity=0.251 Sum_probs=135.7
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCC-CCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecC
Q 042632 293 NLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEF-SSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLR 371 (659)
Q Consensus 293 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 371 (659)
..+.++++++.++. +|..+. ++++.|++++|.+.+..+. +..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46677777777763 444332 4677777777777665543 3366777777777777765555555667777777777
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeee
Q 042632 372 GNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMA 451 (659)
Q Consensus 372 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (659)
+|++++..+..+..+++|++|++++|.+++..+..|..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------ 131 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------ 131 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------------------------------
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------------------------------
Confidence 77776555556667777777777777776554444433
Q ss_pred ccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChh
Q 042632 452 KNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLE 531 (659)
Q Consensus 452 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 531 (659)
+++|++|++++|++++..+..|+.+++|++|+|++|++++..+..|..+++|+.|++++|++++..+..
T Consensus 132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 456777777777777555555677777777777777777655556677777777777777777555555
Q ss_pred hhcCCCCCeEeccCCccccCCC
Q 042632 532 LSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 532 l~~l~~L~~L~l~~N~l~~~~p 553 (659)
+..+++|+.|++++|++.+..+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 6667777777777777766543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.8e-23 Score=205.89 Aligned_cols=203 Identities=21% Similarity=0.214 Sum_probs=104.4
Q ss_pred CcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCC
Q 042632 318 TRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 318 L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
.+.++++++.++..... ..+++++|++++|++++..+..+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 44555555555432221 1234555555555555444445555555555555555555433444455555555555555
Q ss_pred cCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCc
Q 042632 398 NLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELT 477 (659)
Q Consensus 398 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 477 (659)
.+++..+..|.. +++|++|++++|+++
T Consensus 96 ~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~ 122 (270)
T 2o6q_A 96 KLQALPIGVFDQ-----------------------------------------------------LVNLAELRLDRNQLK 122 (270)
T ss_dssp CCCCCCTTTTTT-----------------------------------------------------CSSCCEEECCSSCCC
T ss_pred cCCcCCHhHccc-----------------------------------------------------ccCCCEEECCCCccC
Confidence 555333333322 345555555555555
Q ss_pred ccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-C
Q 042632 478 GDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-R 556 (659)
Q Consensus 478 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~ 556 (659)
+..+..|+.+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.. .
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 202 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD 202 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhc
Confidence 544455555555555555555555444444555555555555555555444444555555555555555555443322 3
Q ss_pred CCCCCCcCccCCCCCCCCC
Q 042632 557 QFANFDENNYRGNPLLCGP 575 (659)
Q Consensus 557 ~~~~l~~~~~~~N~~~c~~ 575 (659)
.+++++.+++++|||.|++
T Consensus 203 ~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 203 SLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TCTTCCEEECCSSCBCCSS
T ss_pred cccCCCEEEecCCCeeCCC
Confidence 3445555555555555544
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=208.38 Aligned_cols=223 Identities=22% Similarity=0.179 Sum_probs=148.0
Q ss_pred EcccCcCcccCChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcc
Q 042632 152 VISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNL 231 (659)
Q Consensus 152 ~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 231 (659)
+..+..+. .+|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.
T Consensus 13 ~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp ECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCC
T ss_pred EecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCc
Confidence 33333433 455544 246788888888887665667777888888888888877 5665556777888888888888
Q ss_pred ccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCC-CChhhhCCCCCCEEEccCCcccccCCc
Q 042632 232 FVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQ-LPHWAGNFSNLDVLLMSRNSLEGDVSV 310 (659)
Q Consensus 232 i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~ 310 (659)
+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8777777778888888888888888766666677788888888888887753 477777788888888888877766555
Q ss_pred cCCCCCCCc----EEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCC
Q 042632 311 PLSNLQVTR----ILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHL 386 (659)
Q Consensus 311 ~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 386 (659)
.+..+..|+ .|++++|.+.+..+..... .+|++|++++|++++..+..+..+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~------------------------~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE------------------------IRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS------------------------CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC------------------------CcccEEECCCCceeecCHhHhccc
Confidence 555554444 4555555544333322222 355556666665554444445556
Q ss_pred CCCcEEEccCCcCCccc
Q 042632 387 RKLSIVDISCNNLNGSI 403 (659)
Q Consensus 387 ~~L~~L~Ls~n~l~~~~ 403 (659)
++|+.|++++|++++..
T Consensus 224 ~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CSCCEEECCSSCBCCCT
T ss_pred ccccEEEccCCcccccC
Confidence 66666666666665443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6e-23 Score=203.78 Aligned_cols=202 Identities=22% Similarity=0.153 Sum_probs=143.2
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEE
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLF 345 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 345 (659)
.++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+. ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3444444444444444 2332222 3455555555555544445555555555555555555543322 4566777777
Q ss_pred ccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 346 LHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 346 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
+++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------------- 146 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP---------------- 146 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT----------------
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc----------------
Confidence 7777777 56777788888999999999988777778888899999999999888655555544
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 505 (659)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|
T Consensus 147 -------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 147 -------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp -------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred -------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 568899999999999666667788999999999999998 778
Q ss_pred ccccccCCCCEEECcCCcccc
Q 042632 506 RSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 506 ~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
..+..+++|+.|+|++|++..
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCC
T ss_pred hhhcccccCCeEEeCCCCccC
Confidence 888888899999999999863
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.5e-23 Score=206.49 Aligned_cols=202 Identities=23% Similarity=0.267 Sum_probs=145.6
Q ss_pred CCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEec
Q 042632 291 FSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLL 370 (659)
Q Consensus 291 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 370 (659)
+++|+.|++++|.+.. ...+..+++|++|++++|.+.+. +....+++|++|++++|.+++..+..+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 3444444444444431 11234444555555555554432 22335666777777777777666666778888888888
Q ss_pred CCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEee
Q 042632 371 RGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFM 450 (659)
Q Consensus 371 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (659)
++|++++..+..+..+++|++|++++|.+++..+..+..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----------------------------------------- 155 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK----------------------------------------- 155 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-----------------------------------------
Confidence 888888766777788888888888888887655555544
Q ss_pred eccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCCh
Q 042632 451 AKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPL 530 (659)
Q Consensus 451 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 530 (659)
+++|+.|++++|++++..+..++.+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus 156 ------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 220 (272)
T 3rfs_A 156 ------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 220 (272)
T ss_dssp ------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---
T ss_pred ------------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---
Confidence 56788889999988877777788899999999999999988787888999999999999988744
Q ss_pred hhhcCCCCCeEeccCCccccCCCCC
Q 042632 531 ELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 531 ~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
++.|+.+++++|.++|.+|..
T Consensus 221 ----~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 221 ----CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp ----TTTTHHHHHHHHHTGGGBBCT
T ss_pred ----CcHHHHHHHHHHhCCCcccCc
Confidence 456888899999999988865
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.8e-24 Score=219.48 Aligned_cols=259 Identities=19% Similarity=0.157 Sum_probs=122.5
Q ss_pred EEccCccccccCCcCCCCCCCCCEEEccCCCCCcccc----ccccCCC-CCcEEEeecccccCCCChhhhCC-----CCC
Q 042632 225 MNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLE----EGLLNAP-SLYILDVSNNMLSGQLPHWAGNF-----SNL 294 (659)
Q Consensus 225 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~L 294 (659)
++++.|.+++.++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555544444444446666666666554444 4455555 56666666665554444444432 555
Q ss_pred CEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCC-CCCcEEEccCCcCCCCCchhhh----c-CCCCceE
Q 042632 295 DVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNH-SSLRHLFLHNNSLNGNIPHLIN----E-DSNLRAL 368 (659)
Q Consensus 295 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~L 368 (659)
++|++++|.+.+..+..+... ...+ ++|++|++++|.+++..+..+. . .++|++|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT-------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHHHHH-------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 555555555554333321111 0111 3455555555554433333222 2 2355555
Q ss_pred ecCCCcccccCC----ccccCCC-CCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccccc
Q 042632 369 LLRGNNLQGNIP----EPLCHLR-KLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKS 443 (659)
Q Consensus 369 ~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (659)
++++|.+++..+ ..+..++ +|++|++++|++++..+..+...-
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-------------------------------- 191 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL-------------------------------- 191 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH--------------------------------
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH--------------------------------
Confidence 555555553222 2223333 555555555555544443332210
Q ss_pred ccceEeeecccccccccccc-ccccEEEccCCcCccc----CChhhhc-cccCCEEeCCCCcCcccCC----ccccccCC
Q 042632 444 TSRNKFMAKNRYESYKGDVL-NYMTGLDLSSNELTGD----IPSEIGL-LQELHALNLSHNHFSGSIP----RSFSILKM 513 (659)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~ 513 (659)
... ++|+.|||++|++++. ++..+.. .++|++|+|++|.+++..+ ..+..+++
T Consensus 192 -----------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 192 -----------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp -----------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred -----------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 001 2555566666655542 2333333 2356666666666554332 22344555
Q ss_pred CCEEECcCCccccc-------CChhhhcCCCCCeEeccCCccccC
Q 042632 514 IESMDLSYNELSGR-------IPLELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 514 L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
|+.|++++|.+.+. ++..+..+++|+.||+++|++...
T Consensus 255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 66666666653322 122344555566666666665543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.3e-23 Score=202.07 Aligned_cols=208 Identities=17% Similarity=0.158 Sum_probs=131.7
Q ss_pred cCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCc
Q 042632 192 GYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLY 271 (659)
Q Consensus 192 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 271 (659)
..+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34455555555555554 3332 24455555555555555432 2455555566666666665555555555566666
Q ss_pred EEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCC-CCCCCCcEEEccCCc
Q 042632 272 ILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFS-SNHSSLRHLFLHNNS 350 (659)
Q Consensus 272 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~L~~L~l~~n~ 350 (659)
+|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.. ..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 6666666666555555566666666666666666555555566666666666666666554443 356777777777777
Q ss_pred CCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcccc
Q 042632 351 LNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNIS 411 (659)
Q Consensus 351 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 411 (659)
+++..+..+..+++|++|++++|.+.+ .+++|+.++++.|.++|.+|..++.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 776666677888888888888887763 355788888888888888888877654
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.3e-22 Score=193.02 Aligned_cols=212 Identities=19% Similarity=0.157 Sum_probs=162.7
Q ss_pred CCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccC
Q 042632 317 VTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISC 396 (659)
Q Consensus 317 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 396 (659)
..++++++++.++...... .+.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4566777777766544332 25788888888888877777888999999999999999988888889999999999999
Q ss_pred CcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcC
Q 042632 397 NNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNEL 476 (659)
Q Consensus 397 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 476 (659)
|++++..+..|.. +++|++|+|++|++
T Consensus 93 n~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~l 119 (251)
T 3m19_A 93 NQLASLPLGVFDH-----------------------------------------------------LTQLDKLYLGGNQL 119 (251)
T ss_dssp SCCCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSCC
T ss_pred CcccccChhHhcc-----------------------------------------------------cCCCCEEEcCCCcC
Confidence 9998665555554 67899999999999
Q ss_pred cccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCC
Q 042632 477 TGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSR 556 (659)
Q Consensus 477 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~ 556 (659)
++..+..|..+++|++|+|++|++++..+..|+.+++|+.|+|++|++++..+..+..+++|+.|++++|++.+......
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~ 199 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHH
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccH
Confidence 97777778999999999999999997777789999999999999999998888889999999999999999998643321
Q ss_pred CCCC------CCcCccCCCCCCCCCCCCCCCCCC
Q 042632 557 QFAN------FDENNYRGNPLLCGPPVLKNCSSD 584 (659)
Q Consensus 557 ~~~~------l~~~~~~~N~~~c~~~~~~~C~~~ 584 (659)
.+.. .......|+. .|+.+....|..+
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 200 YLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp HHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred HHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 1111 1112233443 5666767778654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.4e-24 Score=224.00 Aligned_cols=239 Identities=21% Similarity=0.274 Sum_probs=138.4
Q ss_pred cCCCCCCCCCEEEccCCCCCcccc----ccccCCCCCcEEEeecccc---cCCCChhh-------hCCCCCCEEEccCCc
Q 042632 238 PKYMNLTQLAWLYLSDNQFTGRLE----EGLLNAPSLYILDVSNNML---SGQLPHWA-------GNFSNLDVLLMSRNS 303 (659)
Q Consensus 238 ~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~l-------~~l~~L~~L~l~~n~ 303 (659)
..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 344556667777777776665432 2355566666666666433 22333332 344555555555555
Q ss_pred ccc----cCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchh----hhcC---------CCCc
Q 042632 304 LEG----DVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHL----INED---------SNLR 366 (659)
Q Consensus 304 l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~ 366 (659)
+.. .++..+. .+++|++|++++|.+++..+.. +..+ ++|+
T Consensus 106 l~~~~~~~l~~~l~-----------------------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 106 FGPTAQEPLIDFLS-----------------------KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp CCTTTHHHHHHHHH-----------------------HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHH-----------------------hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 443 1222333 3445555555555554322222 2222 6777
Q ss_pred eEecCCCccc-ccCC---ccccCCCCCcEEEccCCcCCcc-----cchhhccccccccccCCCCCceeeccccccccCCc
Q 042632 367 ALLLRGNNLQ-GNIP---EPLCHLRKLSIVDISCNNLNGS-----IPSCFTNISLWMEESDSFNGFVIWHGILLDASGRR 437 (659)
Q Consensus 367 ~L~L~~n~l~-~~~~---~~~~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
+|++++|+++ +..+ ..+..+++|++|++++|+++.. .|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~---------------------------- 214 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY---------------------------- 214 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG----------------------------
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc----------------------------
Confidence 7777777765 2223 3455666777777777766521 1112221
Q ss_pred ccccccccceEeeeccccccccccccccccEEEccCCcCc----ccCChhhhccccCCEEeCCCCcCccc----CCcccc
Q 042632 438 LSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELT----GDIPSEIGLLQELHALNLSHNHFSGS----IPRSFS 509 (659)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~ 509 (659)
+++|+.|+|++|+++ +.+|..+..+++|+.|+|++|.+++. +|..+.
T Consensus 215 -------------------------~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 215 -------------------------CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp -------------------------CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred -------------------------CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 456777777777775 45666677777777777777777654 345553
Q ss_pred --ccCCCCEEECcCCcccc----cCChhh-hcCCCCCeEeccCCccccCC
Q 042632 510 --ILKMIESMDLSYNELSG----RIPLEL-SELNYLAIFNVSYNDLLGPV 552 (659)
Q Consensus 510 --~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~~~~ 552 (659)
.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 37777777777777776 366666 55777888888888777654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=9.8e-23 Score=204.94 Aligned_cols=204 Identities=17% Similarity=0.154 Sum_probs=127.9
Q ss_pred CCCCEEEccCCcccccCCccC--CCCCCCcEEEccCCcCcCcCCC-----CCCCCCCcEEEccCCcCCCCCchhhhcCCC
Q 042632 292 SNLDVLLMSRNSLEGDVSVPL--SNLQVTRILDISGNKLYGPLEF-----SSNHSSLRHLFLHNNSLNGNIPHLINEDSN 364 (659)
Q Consensus 292 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 364 (659)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+. ...+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 446666666666655555555 5566666666666666543221 114667777777777776666667777777
Q ss_pred CceEecCCCccccc--C--CccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccc
Q 042632 365 LRALLLRGNNLQGN--I--PEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSR 440 (659)
Q Consensus 365 L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (659)
|++|++++|++.+. . +..+..+++|++|++++|+++ .++.....+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l------------------------------ 219 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL------------------------------ 219 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH------------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH------------------------------
Confidence 77777777776532 1 223356777777777777775 222210000
Q ss_pred cccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhcc---ccCCEEeCCCCcCcccCCccccccCCCCEE
Q 042632 441 IKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLL---QELHALNLSHNHFSGSIPRSFSILKMIESM 517 (659)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 517 (659)
...+++|++|||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|
T Consensus 220 -------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 220 -------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp -------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred -------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 0114667777777777776666666665 57777777777777 5566553 677777
Q ss_pred ECcCCcccccCChhhhcCCCCCeEeccCCcccc
Q 042632 518 DLSYNELSGRIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 518 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
+|++|++++. |. +..+++|+.|++++|+++.
T Consensus 278 ~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 278 DLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp ECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred ECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777777743 33 5667777777777777764
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=9.1e-23 Score=209.89 Aligned_cols=261 Identities=17% Similarity=0.109 Sum_probs=148.9
Q ss_pred EEeCCCCcCcccCCccccCCCCCCEEECCCCCCcCCCCh----hhhcCCC-CCCEEEccCcccccccChhhhccCCCCcc
Q 042632 9 ELNLSGNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPI----SVFANLT-SLEYLSLSDKKFQGSFSLSVLANHSRLEH 83 (659)
Q Consensus 9 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (659)
++++++|.+++.+|+.+...++|++|+|++|.+. .++. ..|.+++ +|++|++++|.+++....
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~----------- 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSD----------- 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-----------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-----------
Confidence 5788999999888887777777999999999998 6775 6788898 899999999988753211
Q ss_pred ccccccchhhhhCC-CCCCEEEccCccccccCchHHh---hcC-CCCCEEEccCcccccccCCC-----CC-CCCccEEE
Q 042632 84 CNISGTIASFLQYQ-YDLRYIDLSHNNLAGTIPTWLL---QNN-TKLEILFLFNNFLTGRLHLP-----DS-KRDLLHLV 152 (659)
Q Consensus 84 ~~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~---~~l-~~L~~L~L~~n~i~~~~~~~-----~~-~~~L~~L~ 152 (659)
.+...+... ++|++|++++|.+++..+..+. ..+ ++|++|++++|.+++..... .. .++|++|+
T Consensus 70 -----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 70 -----ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp -----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred -----HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEE
Confidence 012223333 8899999999999855555432 233 78888888888776542110 01 23455555
Q ss_pred cccCcCcccCChhhhh---cCC-CCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCC-CCCCEEEc
Q 042632 153 ISNNNFIGTLPDNFGV---ILP-ELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGC-VSLEFMNL 227 (659)
Q Consensus 153 l~~n~l~~~~~~~~~~---~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~l 227 (659)
+++|.+.+..+..+.. .++ +|++|++++|++++..+..+.. .+..+ ++|++|++
T Consensus 145 Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~l~~~~~~L~~L~L 203 (362)
T 3goz_A 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK---------------------FLASIPASVTSLDL 203 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------------HHHTSCTTCCEEEC
T ss_pred ccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH---------------------HHHhCCCCCCEEEC
Confidence 5555544322222110 122 4445555544444333222211 11222 24555555
Q ss_pred cCcccccc----CCcCCCC-CCCCCEEEccCCCCCcccc----ccccCCCCCcEEEeecccccCCCC-------hhhhCC
Q 042632 228 SHNLFVGQ----IFPKYMN-LTQLAWLYLSDNQFTGRLE----EGLLNAPSLYILDVSNNMLSGQLP-------HWAGNF 291 (659)
Q Consensus 228 ~~n~i~~~----~~~~~~~-l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~l 291 (659)
++|.+.+. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 55554431 1112222 2355566666665554322 233455666666666666442222 234456
Q ss_pred CCCCEEEccCCccccc
Q 042632 292 SNLDVLLMSRNSLEGD 307 (659)
Q Consensus 292 ~~L~~L~l~~n~l~~~ 307 (659)
++|+.|++++|.+...
T Consensus 284 ~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 284 QKIILVDKNGKEIHPS 299 (362)
T ss_dssp CEEEEECTTSCBCCGG
T ss_pred CceEEEecCCCcCCCc
Confidence 6677777777776644
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.1e-21 Score=190.64 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=161.2
Q ss_pred CCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccC
Q 042632 339 SSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESD 418 (659)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~ 418 (659)
...++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++..+..|..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------- 81 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD--------- 81 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT---------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc---------
Confidence 45788999999998 5666554 68999999999999888888999999999999999999777766655
Q ss_pred CCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCC
Q 042632 419 SFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHN 498 (659)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N 498 (659)
+++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 82 --------------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 82 --------------------------------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp --------------------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC
Confidence 678999999999999888888999999999999999
Q ss_pred cCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCC
Q 042632 499 HFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCG 574 (659)
Q Consensus 499 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~ 574 (659)
++++..+..|..+++|+.|+|++|.+++..+..+..+++|++|++++|++++.++.. ..++.++.+++++|++.|.
T Consensus 118 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999777778899999999999999999777778999999999999999999877744 6788899999999999996
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.1e-23 Score=218.99 Aligned_cols=216 Identities=17% Similarity=0.224 Sum_probs=138.5
Q ss_pred cCCCCCcEEEeecccccC----CCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCC
Q 042632 265 LNAPSLYILDVSNNMLSG----QLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSS 340 (659)
Q Consensus 265 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 340 (659)
..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+... +.. +..+.+.+ ..++
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--l~~--l~~~~~~~------~~~~ 160 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQE--LAVNKKAK------NAPP 160 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHH--HHHHHHHH------TCCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--HHH--Hhhhhhcc------cCCC
Confidence 567777777777777775 355567777788888888887754333222211 000 00000000 0145
Q ss_pred CcEEEccCCcCC-CCCc---hhhhcCCCCceEecCCCcccc-----cCCccccCCCCCcEEEccCCcCC----cccchhh
Q 042632 341 LRHLFLHNNSLN-GNIP---HLINEDSNLRALLLRGNNLQG-----NIPEPLCHLRKLSIVDISCNNLN----GSIPSCF 407 (659)
Q Consensus 341 L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~ 407 (659)
|++|++++|+++ ..++ ..+..+++|++|++++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+
T Consensus 161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 240 (386)
T 2ca6_A 161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 240 (386)
T ss_dssp CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHH
Confidence 566666666654 2233 356677888888888888762 23336777888888888888885 3445444
Q ss_pred ccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc----CChh
Q 042632 408 TNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD----IPSE 483 (659)
Q Consensus 408 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~ 483 (659)
.. +++|+.|+|++|++++. ++..
T Consensus 241 ~~-----------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 241 KS-----------------------------------------------------WPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp GG-----------------------------------------------------CTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred cc-----------------------------------------------------CCCcCEEECCCCCCchhhHHHHHHH
Confidence 33 56788889988888865 4556
Q ss_pred hhc--cccCCEEeCCCCcCcc----cCCccc-cccCCCCEEECcCCcccccCC--hhhh-cCCCCCeEec
Q 042632 484 IGL--LQELHALNLSHNHFSG----SIPRSF-SILKMIESMDLSYNELSGRIP--LELS-ELNYLAIFNV 543 (659)
Q Consensus 484 l~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~p--~~l~-~l~~L~~L~l 543 (659)
+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..+ ..+. .++.++.+++
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 643 8889999999999986 477776 668999999999999987664 3332 2444444444
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=202.25 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=74.4
Q ss_pred CCEEEccCCCCCccccccc--cCCCCCcEEEeecccccCCCC----hhhhCCCCCCEEEccCCcccccCCccCCCCCCCc
Q 042632 246 LAWLYLSDNQFTGRLEEGL--LNAPSLYILDVSNNMLSGQLP----HWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTR 319 (659)
Q Consensus 246 L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 319 (659)
|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444444 444555555555555543322 2223455566666666666555555555566666
Q ss_pred EEEccCCcCcCc---CCC--CCCCCCCcEEEccCCcCCCCCch----hhhcCCCCceEecCCCcccccCCccccCC---C
Q 042632 320 ILDISGNKLYGP---LEF--SSNHSSLRHLFLHNNSLNGNIPH----LINEDSNLRALLLRGNNLQGNIPEPLCHL---R 387 (659)
Q Consensus 320 ~L~l~~n~l~~~---~~~--~~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~ 387 (659)
+|++++|++.+. ... ...+++|++|++++|+++ .++. .+..+++|++|++++|++++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 666666654321 111 124455555555555554 1222 23445555555555555554444444333 3
Q ss_pred CCcEEEccCCcCC
Q 042632 388 KLSIVDISCNNLN 400 (659)
Q Consensus 388 ~L~~L~Ls~n~l~ 400 (659)
+|++|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 252 ALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 4444444444444
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.6e-23 Score=211.06 Aligned_cols=230 Identities=16% Similarity=0.177 Sum_probs=144.2
Q ss_pred CCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccccc-CCccCCCCCCCcEEEccCCcCcCcCCC-CCCCCCCcEEE
Q 042632 268 PSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGD-VSVPLSNLQVTRILDISGNKLYGPLEF-SSNHSSLRHLF 345 (659)
Q Consensus 268 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~L~~L~ 345 (659)
+.++.+++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+. ...+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4455555555555433332 33445555555555554433 344445555555555555554432211 12456666666
Q ss_pred ccCC-cCCC-CCchhhhcCCCCceEecCCC-ccccc-CCccccCCC-CCcEEEccCC--cCC-cccchhhcccccccccc
Q 042632 346 LHNN-SLNG-NIPHLINEDSNLRALLLRGN-NLQGN-IPEPLCHLR-KLSIVDISCN--NLN-GSIPSCFTNISLWMEES 417 (659)
Q Consensus 346 l~~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls~n--~l~-~~~p~~~~~l~~~~~~~ 417 (659)
+++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-------- 220 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-------- 220 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--------
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--------
Confidence 6666 4553 25556777888888888888 77653 456677788 8888888888 444 233443333
Q ss_pred CCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCc-CcccCChhhhccccCCEEeCC
Q 042632 418 DSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNE-LTGDIPSEIGLLQELHALNLS 496 (659)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls 496 (659)
+++|+.|++++|. +++..+..+..+++|++|+++
T Consensus 221 ---------------------------------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 221 ---------------------------------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp ---------------------------------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred ---------------------------------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 5688889999888 776777788888999999999
Q ss_pred CCc-CcccCCccccccCCCCEEECcCCcccccCChhhhcC-CCCCeEeccCCccccCCCCC
Q 042632 497 HNH-FSGSIPRSFSILKMIESMDLSYNELSGRIPLELSEL-NYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 497 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~l~~N~l~~~~p~~ 555 (659)
+|. ++......++.+++|+.|++++| ++. +.+..+ ..++.|++++|++++..|..
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 885 33222236788899999999988 432 233333 23667778999998877654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8e-22 Score=190.33 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=16.6
Q ss_pred ccCCEEeCCCCc-CcccCCcccccc-CCCCEEECcCCccc
Q 042632 488 QELHALNLSHNH-FSGSIPRSFSIL-KMIESMDLSYNELS 525 (659)
Q Consensus 488 ~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~ 525 (659)
++|++|++++|+ +++..+..|..+ ++|+.|++++|+++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 344444444442 443333344444 44444444444444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.7e-21 Score=195.27 Aligned_cols=193 Identities=19% Similarity=0.275 Sum_probs=109.9
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEE
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLF 345 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 345 (659)
.+++|+.|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~----------------------- 91 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELE----------------------- 91 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE-----------------------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEE-----------------------
Confidence 45566666666666653 23 35555666666666665553322 44444455554
Q ss_pred ccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 346 LHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 346 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
+++|.+++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|.+++..+ +..
T Consensus 92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~---------------- 149 (308)
T 1h6u_A 92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG---------------- 149 (308)
T ss_dssp CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG----------------
T ss_pred ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC----------------
Confidence 445544422 2355556666666666666532 2 25566666666666666653322 221
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 505 (659)
+++|+.|++++|++++. +. +..+++|+.|++++|++++..+
T Consensus 150 -------------------------------------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 150 -------------------------------------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred -------------------------------------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh
Confidence 45666666666666643 22 6666666777777766664332
Q ss_pred ccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc
Q 042632 506 RSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 506 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 191 --l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 --LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6666677777777776664332 5666677777777777665
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.8e-23 Score=211.81 Aligned_cols=198 Identities=17% Similarity=0.118 Sum_probs=119.9
Q ss_pred CCCCEEeCcCCcCccccChhhhhCC--CCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCcc-ccccccCCCCCc
Q 042632 195 ERLLFLDLSSNNFSGELPKQFLTGC--VSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGR-LEEGLLNAPSLY 271 (659)
Q Consensus 195 ~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~ 271 (659)
..++.++++++.+. ...+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 34788999988776 2233455 7899999999988876554 45678888888888887754 667777888888
Q ss_pred EEEeecccccCCCChhhhCCCCCCEEEccCC-ccccc-CCccCCCCCCCcEEEccCC-cCcCc--CCCCCCCC-CCcEEE
Q 042632 272 ILDVSNNMLSGQLPHWAGNFSNLDVLLMSRN-SLEGD-VSVPLSNLQVTRILDISGN-KLYGP--LEFSSNHS-SLRHLF 345 (659)
Q Consensus 272 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~--~~~~~~~~-~L~~L~ 345 (659)
+|++++|.+++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ......++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888877666777777888888888887 45532 3334555556666666665 44431 11111334 444444
Q ss_pred ccCC--cCC-CCCchhhhcCCCCceEecCCCc-ccccCCccccCCCCCcEEEccCC
Q 042632 346 LHNN--SLN-GNIPHLINEDSNLRALLLRGNN-LQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 346 l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
+++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4444 222 1233333444444444444444 33333334444444444444444
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.6e-21 Score=186.79 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=118.2
Q ss_pred CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcc-ccccCCcCCCCCCCCCEEEccC-CCCCccccccccCCCCCcEE
Q 042632 196 RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNL-FVGQIFPKYMNLTQLAWLYLSD-NQFTGRLEEGLLNAPSLYIL 273 (659)
Q Consensus 196 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L 273 (659)
++++|++++|.++ .+|...+..+++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4444444444444 3444334445555555555554 4444444455555555555555 55554444555556666666
Q ss_pred EeecccccCCCChhhhCCCCCC---EEEccCC-cccccCCccCCCCCCCc-EEEccCCcCcCcCCCCCCCCCCcEEEccC
Q 042632 274 DVSNNMLSGQLPHWAGNFSNLD---VLLMSRN-SLEGDVSVPLSNLQVTR-ILDISGNKLYGPLEFSSNHSSLRHLFLHN 348 (659)
Q Consensus 274 ~L~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 348 (659)
++++|++++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ .|++++|.++...+..+..++|++|++++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 666666653 343 55555555 6666666 66655555666677777 77777777664444334346778888888
Q ss_pred Cc-CCCCCchhhhcC-CCCceEecCCCcccccCCccccCCCCCcEEEccCC
Q 042632 349 NS-LNGNIPHLINED-SNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 349 n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
|+ +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 84 775556677777 888888888888874 4433 5677888888765
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.7e-21 Score=192.84 Aligned_cols=206 Identities=21% Similarity=0.294 Sum_probs=133.9
Q ss_pred EccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCccc
Q 042632 226 NLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLE 305 (659)
Q Consensus 226 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 305 (659)
.+..+.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence 34444444322 245678999999999999853 4 68889999999999999985444 899999999999999987
Q ss_pred ccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccC
Q 042632 306 GDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCH 385 (659)
Q Consensus 306 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 385 (659)
+. ..+..+++|++|++++|.+++.. .+..+++|++|++++|.+++..+ +..
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~~-------------------------~l~~l~~L~~L~l~~n~l~~~~~--l~~ 149 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDVT-------------------------PLAGLSNLQVLYLDLNQITNISP--LAG 149 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCCG-------------------------GGTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCch-------------------------hhcCCCCCCEEECCCCccCcCcc--ccC
Confidence 53 34666666666666666654322 14445555555555555553222 555
Q ss_pred CCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeecccccccccccccc
Q 042632 386 LRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNY 465 (659)
Q Consensus 386 l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 465 (659)
+++|+.|++++|.+++..+ +.. +++
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~-----------------------------------------------------l~~ 174 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LAN-----------------------------------------------------LSK 174 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTT-----------------------------------------------------CTT
T ss_pred CCCccEEEccCCcCCCChh--hcC-----------------------------------------------------CCC
Confidence 5566666666665553221 222 455
Q ss_pred ccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 466 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
|+.|++++|++++..+ +..+++|++|+|++|++++..| +..+++|+.|++++|+++
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 6666666666663322 6666777777777777764432 666777777777777776
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=3.1e-20 Score=189.89 Aligned_cols=241 Identities=15% Similarity=0.079 Sum_probs=177.2
Q ss_pred CEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCC-ccCCCCCCCcE-EEcc
Q 042632 247 AWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVTRI-LDIS 324 (659)
Q Consensus 247 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~ 324 (659)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|..+++|++|++++|++.+.++ .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888888 556655 4689999999999986666778999999999999998865444 56788887765 5666
Q ss_pred CCcCcCcCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCC-CcccccCCccccCCC-CCcEEEccCCcCCc
Q 042632 325 GNKLYGPLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRG-NNLQGNIPEPLCHLR-KLSIVDISCNNLNG 401 (659)
Q Consensus 325 ~n~l~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~ 401 (659)
+|++....+..+ .+++|++|++++|+++...+..+....++..|++.+ +.+....+..|..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 788887665544 788999999999998866666666677788888865 567655556666664 58889999998874
Q ss_pred ccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccC-CcCcccC
Q 042632 402 SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSS-NELTGDI 480 (659)
Q Consensus 402 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~ 480 (659)
..+..|. ..+|+.|++++ |.++...
T Consensus 169 i~~~~f~------------------------------------------------------~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 169 IHNSAFN------------------------------------------------------GTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ECTTSST------------------------------------------------------TEEEEEEECTTCTTCCCCC
T ss_pred CChhhcc------------------------------------------------------ccchhHHhhccCCcccCCC
Confidence 3333332 34688888875 6666444
Q ss_pred ChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcc
Q 042632 481 PSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDL 548 (659)
Q Consensus 481 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 548 (659)
++.|+.+++|++|+|++|+|+...+.. +.+|+.|.+.++.-...+|. +.++++|+.++++++.-
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH 258 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred HHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence 567889999999999999998444434 45666666666655557774 78889999999887643
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.7e-19 Score=184.44 Aligned_cols=198 Identities=17% Similarity=0.092 Sum_probs=101.8
Q ss_pred CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccC-CcCCCCCCCCCE-EEccCCCCCccccccccCCCCCcEE
Q 042632 196 RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQI-FPKYMNLTQLAW-LYLSDNQFTGRLEEGLLNAPSLYIL 273 (659)
Q Consensus 196 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~l~~n~i~~~~~~~~~~l~~L~~L 273 (659)
++++|+|++|+++ .+|...|.++++|++|++++|++.+.+ +.+|.+++++++ +.+..|+++...+..|..+++|++|
T Consensus 31 ~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 3444444444444 444443444444444444444443222 223444444433 3333445554444555555555555
Q ss_pred EeecccccCCCChhhhCCCCCCEEEccC-CcccccCCccCCCCC-CCcEEEccCCcCcCcCCCCCCCCCCcEEEccC-Cc
Q 042632 274 DVSNNMLSGQLPHWAGNFSNLDVLLMSR-NSLEGDVSVPLSNLQ-VTRILDISGNKLYGPLEFSSNHSSLRHLFLHN-NS 350 (659)
Q Consensus 274 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~-n~ 350 (659)
++++|+++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|+++...+..+...+|+++++++ |.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 5555555544333444444455555543 344444444454443 46667777777665555555556677777764 55
Q ss_pred CCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCC
Q 042632 351 LNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 351 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~ 233 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARST 233 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTC
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccC
Confidence 55433456677778888888888877443333 345555555444
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.6e-20 Score=178.25 Aligned_cols=157 Identities=21% Similarity=0.179 Sum_probs=127.9
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCC-ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCC
Q 042632 342 RHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIP-EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSF 420 (659)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 420 (659)
+.+++++|.++ .+|..+. +.+++|++++|++++..+ ..|..+++|+.|++++|.+++..+..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46777777776 3555442 356788888888886644 45778888888888888888666656654
Q ss_pred CCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcC
Q 042632 421 NGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHF 500 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 500 (659)
+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 80 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 80 ------------------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 56788899999999877777889999999999999999
Q ss_pred cccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCC
Q 042632 501 SGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 501 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~ 554 (659)
++..|..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++.|.++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 988888999999999999999999988899999999999999999999987653
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=171.30 Aligned_cols=175 Identities=22% Similarity=0.183 Sum_probs=139.0
Q ss_pred cEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCc
Q 042632 319 RILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNN 398 (659)
Q Consensus 319 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 398 (659)
+.++.+++.++..... ..++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3455555555443322 24578888888888886666677888999999999999986666677889999999999999
Q ss_pred CCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcc
Q 042632 399 LNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTG 478 (659)
Q Consensus 399 l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 478 (659)
+++..+..|.. +++|++|++++|++++
T Consensus 88 l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~l~~ 114 (208)
T 2o6s_A 88 LQSLPNGVFDK-----------------------------------------------------LTQLKELALNTNQLQS 114 (208)
T ss_dssp CCCCCTTTTTT-----------------------------------------------------CTTCCEEECCSSCCCC
T ss_pred CCccCHhHhcC-----------------------------------------------------ccCCCEEEcCCCcCcc
Confidence 88555544544 6789999999999997
Q ss_pred cCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCC
Q 042632 479 DIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNS 555 (659)
Q Consensus 479 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~ 555 (659)
..+..+..+++|++|++++|++++..+..|..+++|+.|++++|++.+ .+++|+.|+++.|+++|.+|..
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeecc
Confidence 777778899999999999999997777778999999999999998874 3567899999999999988864
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.3e-20 Score=177.06 Aligned_cols=156 Identities=21% Similarity=0.233 Sum_probs=123.8
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCC
Q 042632 342 RHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFN 421 (659)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~ 421 (659)
+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|+.|+|++|.+++..|..|.+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 45667777766 4554443 57888888888888766777888888888888888888666766655
Q ss_pred CceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCc
Q 042632 422 GFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFS 501 (659)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 501 (659)
+++|++|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 79 -----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 79 -----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 567888888888888666666788888999999999988
Q ss_pred ccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCC
Q 042632 502 GSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 502 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 553 (659)
+..|..|..+++|+.|+|++|.+++..+..+..+++|+.|++++|++.+...
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 8888888888999999999999887777778888889999999998887543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.2e-19 Score=192.94 Aligned_cols=188 Identities=26% Similarity=0.324 Sum_probs=128.1
Q ss_pred CCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccC
Q 042632 269 SLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHN 348 (659)
Q Consensus 269 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 348 (659)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++... .. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hh--cCCCEEECCC
Confidence 78888888888875 55544 267888888888887 444 346778888888887776333 22 2777778877
Q ss_pred CcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecc
Q 042632 349 NSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHG 428 (659)
Q Consensus 349 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 428 (659)
|.+++ +|. .+++|++|++++|.+++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------------------- 179 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------------------- 179 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--------------------
Confidence 77775 444 56777777777777774 444 45677777777777764 443 21
Q ss_pred ccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccC-------CEEeCCCCcCc
Q 042632 429 ILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQEL-------HALNLSHNHFS 501 (659)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~Ls~N~l~ 501 (659)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+
T Consensus 180 -----------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 180 -----------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp -----------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC
T ss_pred -----------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce
Confidence 35777777777777 5555 443 55 77777777777
Q ss_pred ccCCccccccCCCCEEECcCCcccccCChhhhcCC
Q 042632 502 GSIPRSFSILKMIESMDLSYNELSGRIPLELSELN 536 (659)
Q Consensus 502 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 536 (659)
.+|..+..+++|+.|+|++|++++.+|..+..++
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5666666677777777777777777777766544
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.6e-19 Score=168.62 Aligned_cols=160 Identities=20% Similarity=0.182 Sum_probs=77.2
Q ss_pred CCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEe
Q 042632 196 RLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDV 275 (659)
Q Consensus 196 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 275 (659)
+|++|++++|.++ .++...+..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4444444444444 333333344444444444444444433333444455555555555554444444445555555555
Q ss_pred ecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCC
Q 042632 276 SNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNI 355 (659)
Q Consensus 276 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~ 355 (659)
++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .++.|+.|+++.|++++.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence 5555554444444555555555555555554444444555555555555554332 2334555555555555555
Q ss_pred chhhhcC
Q 042632 356 PHLINED 362 (659)
Q Consensus 356 ~~~~~~l 362 (659)
|.+++.+
T Consensus 182 p~~~~~l 188 (208)
T 2o6s_A 182 RNSAGSV 188 (208)
T ss_dssp BCTTSSB
T ss_pred eccCccc
Confidence 5544433
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=5.4e-20 Score=188.91 Aligned_cols=179 Identities=24% Similarity=0.162 Sum_probs=143.3
Q ss_pred cEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhh-cCCCCceEecCCCcccccCCccccCCCCCcEEEccCC
Q 042632 319 RILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLIN-EDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 319 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
+.++++++.++..... ..+.++.|++++|++++..+..+. .+++|++|++++|++++..+..|..+++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 6788888888765433 235688999999999877777776 8899999999999998777788889999999999999
Q ss_pred cCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCc
Q 042632 398 NLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELT 477 (659)
Q Consensus 398 ~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 477 (659)
++++..+..|.. +++|+.|+|++|+++
T Consensus 99 ~l~~~~~~~~~~-----------------------------------------------------l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 99 HLHTLDEFLFSD-----------------------------------------------------LQALEVLLLYNNHIV 125 (361)
T ss_dssp CCCEECTTTTTT-----------------------------------------------------CTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCC-----------------------------------------------------CcCCCEEECCCCccc
Confidence 988655555554 668899999999999
Q ss_pred ccCChhhhccccCCEEeCCCCcCcccCCccc---cccCCCCEEECcCCcccccCChhhhcCCC--CCeEeccCCccccCC
Q 042632 478 GDIPSEIGLLQELHALNLSHNHFSGSIPRSF---SILKMIESMDLSYNELSGRIPLELSELNY--LAIFNVSYNDLLGPV 552 (659)
Q Consensus 478 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~--L~~L~l~~N~l~~~~ 552 (659)
+..|..|..+++|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.|..
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCc
Confidence 8888889999999999999999985544455 56889999999999998666677788876 488999999988754
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=1.9e-19 Score=170.79 Aligned_cols=155 Identities=19% Similarity=0.276 Sum_probs=137.8
Q ss_pred ceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccccccc
Q 042632 366 RALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTS 445 (659)
Q Consensus 366 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (659)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 67999999998 5676554 68999999999999666656654
Q ss_pred ceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 446 RNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
+++|+.|+|++|++++..|..|..+++|++|+|++|+++...+..|..+++|+.|+|++|.++
T Consensus 55 -----------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 55 -----------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -----------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 678999999999999888999999999999999999999777777899999999999999999
Q ss_pred ccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 526 GRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 526 ~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+..|..|..+++|+.|++++|++++..+.. ..++.++.+++++||+.|++.
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 998999999999999999999999977754 668889999999999999764
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=3.4e-19 Score=182.88 Aligned_cols=176 Identities=24% Similarity=0.217 Sum_probs=140.4
Q ss_pred CEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCC--CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCC
Q 042632 295 DVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSS--NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRG 372 (659)
Q Consensus 295 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 372 (659)
+.++++++.+.. +|..+. ..++.|++++|.+++..+... .+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 678888888874 555443 458889999999887666544 788999999999999877777888899999999999
Q ss_pred CcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeec
Q 042632 373 NNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAK 452 (659)
Q Consensus 373 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (659)
|++++..+..|..+++|+.|+|++|++++..|..|..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------------------- 134 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED------------------------------------------- 134 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-------------------------------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-------------------------------------------
Confidence 9998777778888999999999999998666666655
Q ss_pred cccccccccccccccEEEccCCcCcccCChhh---hccccCCEEeCCCCcCcccCCccccccCC--CCEEECcCCcccc
Q 042632 453 NRYESYKGDVLNYMTGLDLSSNELTGDIPSEI---GLLQELHALNLSHNHFSGSIPRSFSILKM--IESMDLSYNELSG 526 (659)
Q Consensus 453 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~ 526 (659)
+++|+.|+|++|++++..+..| ..+++|+.|+|++|++++..+..+..++. |+.|+|++|++..
T Consensus 135 ----------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 135 ----------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ----------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ----------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 6688999999999986544445 56889999999999998666677888876 4889999998873
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=8.3e-19 Score=188.46 Aligned_cols=196 Identities=27% Similarity=0.283 Sum_probs=119.9
Q ss_pred CCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEcc
Q 042632 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMS 300 (659)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 300 (659)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-------------- 117 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-------------- 117 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC--------------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch--------------
Confidence 56666666666654 33333 245666666666555 333 224455555555555543 333
Q ss_pred CCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCC
Q 042632 301 RNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIP 380 (659)
Q Consensus 301 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 380 (659)
+.. +|+.|++++|.+++... .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|
T Consensus 118 -----------l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 118 -----------LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp -----------CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred -----------hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 322 55555555555554222 45666677777777664 443 45677888888887775 55
Q ss_pred ccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccc
Q 042632 381 EPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKG 460 (659)
Q Consensus 381 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (659)
. +. ++|+.|++++|+|+ .+|. +.. . + .
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~-L----------------------------------------------~ 203 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV-R-N----------------------------------------------H 203 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------------------------------
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH-h-h----------------------------------------------h
Confidence 5 54 77888888888877 5554 321 0 0 0
Q ss_pred cccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCC
Q 042632 461 DVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKM 513 (659)
Q Consensus 461 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 513 (659)
...+.|+.|+|++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus 204 ~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 01344588999999998 67888888999999999999998888888776654
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=8.8e-19 Score=167.37 Aligned_cols=156 Identities=21% Similarity=0.199 Sum_probs=119.3
Q ss_pred CcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCC
Q 042632 341 LRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSF 420 (659)
Q Consensus 341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 420 (659)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|++++..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 445666666665 4454332 67888888888888777777888888888888888886444444443
Q ss_pred CCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcC
Q 042632 421 NGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHF 500 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 500 (659)
+++|+.|+|++|++++..+..|..+++|++|+|++|++
T Consensus 87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 56788888888888876666778888888888888888
Q ss_pred cccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCC
Q 042632 501 SGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 501 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p 553 (659)
+ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8 678888888888888888888886666778888888888888888887655
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=168.42 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=137.7
Q ss_pred CceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccch-hhccccccccccCCCCCceeeccccccccCCccccccc
Q 042632 365 LRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPS-CFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKS 443 (659)
Q Consensus 365 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (659)
-+++++++|.++ .+|..+. +.+++|++++|.+++..|. .|..
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~---------------------------------- 55 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK---------------------------------- 55 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG----------------------------------
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc----------------------------------
Confidence 368999999998 5676553 4678999999999866443 3433
Q ss_pred ccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCc
Q 042632 444 TSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|.
T Consensus 56 -------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 116 (220)
T 2v70_A 56 -------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR 116 (220)
T ss_dssp -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred -------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence 6789999999999998888899999999999999999998888889999999999999999
Q ss_pred ccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 524 LSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 524 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+++..|..|..+++|++|++++|++++..|.. ..++.++.+++++||+.|+++
T Consensus 117 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 117 ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998999999999999999999999987765 678889999999999999765
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.3e-18 Score=172.63 Aligned_cols=170 Identities=22% Similarity=0.334 Sum_probs=114.4
Q ss_pred CCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEc
Q 042632 315 LQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDI 394 (659)
Q Consensus 315 l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (659)
+++|+.|++++|.+... +....+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 34444555555544432 222345566666666666664333 6677777777777777764 22 3777777888888
Q ss_pred cCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCC
Q 042632 395 SCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSN 474 (659)
Q Consensus 395 s~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 474 (659)
++|.+++. + .+.. +++|+.|++++|
T Consensus 120 ~~n~i~~~-~-~l~~-----------------------------------------------------l~~L~~L~l~~n 144 (291)
T 1h6t_A 120 EHNGISDI-N-GLVH-----------------------------------------------------LPQLESLYLGNN 144 (291)
T ss_dssp TTSCCCCC-G-GGGG-----------------------------------------------------CTTCCEEECCSS
T ss_pred CCCcCCCC-h-hhcC-----------------------------------------------------CCCCCEEEccCC
Confidence 87777642 1 2222 567888888888
Q ss_pred cCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc
Q 042632 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 475 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|.+++ +| .+..+++|+.|++++|+++.
T Consensus 145 ~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 145 KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88754 467788888888888888875544 7788888888888888874 44 37788888888888888876
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.3e-18 Score=166.17 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=138.2
Q ss_pred CCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccccc
Q 042632 364 NLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKS 443 (659)
Q Consensus 364 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (659)
..+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~---------------------------------- 62 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDS---------------------------------- 62 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTT----------------------------------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhC----------------------------------
Confidence 4678999999998 6666553 79999999999999877877765
Q ss_pred ccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCc
Q 042632 444 TSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNE 523 (659)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 523 (659)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.
T Consensus 63 -------------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 63 -------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK 123 (229)
T ss_dssp -------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc
Confidence 6789999999999997767778999999999999999998777889999999999999999
Q ss_pred ccccCChhhhcCCCCCeEeccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 524 LSGRIPLELSELNYLAIFNVSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 524 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
++ .+|..+..+++|++|++++|++++..+.. ..+..++.+++.+||+.|.++
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 88999999999999999999999876643 667889999999999999764
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.6e-18 Score=171.98 Aligned_cols=171 Identities=22% Similarity=0.328 Sum_probs=110.1
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEE
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLF 345 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~ 345 (659)
.+++|+.|++++|.+... + .+..+++|++|++++|++. +..+ ...+++|+.|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~------------------------~~~~-l~~l~~L~~L~ 96 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT------------------------DIKP-LANLKNLGWLF 96 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC------------------------CCGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC------------------------CCcc-cccCCCCCEEE
Confidence 345555666655555522 2 2444555555555555554 3332 23445555555
Q ss_pred ccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCcee
Q 042632 346 LHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVI 425 (659)
Q Consensus 346 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~ 425 (659)
+++|.+++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|.+++. ..+..
T Consensus 97 l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~---------------- 154 (291)
T 1h6t_A 97 LDENKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSR---------------- 154 (291)
T ss_dssp CCSSCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGG----------------
T ss_pred CCCCcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhcc----------------
Confidence 55555553 2 2366777777777777777643 3567777888888888877643 22222
Q ss_pred eccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC
Q 042632 426 WHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP 505 (659)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 505 (659)
+++|+.|++++|++++..| +..+++|+.|++++|.+++ +|
T Consensus 155 -------------------------------------l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~ 194 (291)
T 1h6t_A 155 -------------------------------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR 194 (291)
T ss_dssp -------------------------------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG
T ss_pred -------------------------------------CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch
Confidence 5678888888888885444 7888888888888888874 34
Q ss_pred ccccccCCCCEEECcCCcccc
Q 042632 506 RSFSILKMIESMDLSYNELSG 526 (659)
Q Consensus 506 ~~~~~l~~L~~L~Ls~N~l~~ 526 (659)
.+..+++|+.|++++|+++.
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhccCCCCCEEECcCCcccC
Confidence 47888888888888888874
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.9e-18 Score=158.88 Aligned_cols=153 Identities=18% Similarity=0.272 Sum_probs=110.8
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------- 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------- 110 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence 4456777777777776 344 5677778888888888665 2346777888888888888887655555544
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLS 496 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 496 (659)
+++|+.|++++|++++..|..++.+++|++|+++
T Consensus 111 ----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 111 ----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp ----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred ----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 5678888888888887777788888888888888
Q ss_pred CCc-CcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCcccc
Q 042632 497 HNH-FSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 497 ~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
+|+ ++ .+| .+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus 145 ~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 887 55 444 67888888888888888874 44 67888888888888888754
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=6.3e-18 Score=183.81 Aligned_cols=166 Identities=20% Similarity=0.281 Sum_probs=85.7
Q ss_pred CCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccC
Q 042632 222 LEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSR 301 (659)
Q Consensus 222 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 301 (659)
+..+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334455555443322 34566777777777777643 2 46667777777777777764333 66666677777776
Q ss_pred CcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCc
Q 042632 302 NSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPE 381 (659)
Q Consensus 302 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 381 (659)
|.+.+. ..+..+++|+.|++++|.+.+. +....+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 666532 2455555555555555555432 2222344444444444444432 334444444444444444443222
Q ss_pred cccCCCCCcEEEccCCcCC
Q 042632 382 PLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 382 ~~~~l~~L~~L~Ls~n~l~ 400 (659)
+..+++|+.|+|++|.++
T Consensus 171 -l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp -GTTCTTCCEEECCSSCCC
T ss_pred -hccCCCCCEEECcCCCCC
Confidence 444444444444444443
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.5e-18 Score=160.77 Aligned_cols=91 Identities=24% Similarity=0.318 Sum_probs=63.5
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45666677777777666666677777777777777777766666677777777777777777766677777777777777
Q ss_pred ccCCccccCCC
Q 042632 543 VSYNDLLGPVP 553 (659)
Q Consensus 543 l~~N~l~~~~p 553 (659)
+++|+++|.++
T Consensus 133 L~~N~l~c~c~ 143 (192)
T 1w8a_A 133 LASNPFNCNCH 143 (192)
T ss_dssp CTTCCBCCSGG
T ss_pred eCCCCccCcCc
Confidence 77777776554
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.8e-17 Score=180.30 Aligned_cols=106 Identities=21% Similarity=0.338 Sum_probs=53.8
Q ss_pred hhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCce
Q 042632 288 AGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRA 367 (659)
Q Consensus 288 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 367 (659)
+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ ...+++|+.|+|++|.+++ + ..+..+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 34556666666766666532 2 35555566666666655554333 3344555555555555542 1 13444555555
Q ss_pred EecCCCcccccCCccccCCCCCcEEEccCCcCC
Q 042632 368 LLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 368 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
|+|++|.+.+. ..+..+++|+.|+|++|.++
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 55555555421 23444555555555555444
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.1e-20 Score=204.36 Aligned_cols=87 Identities=25% Similarity=0.293 Sum_probs=42.5
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccC-ChhhhcCCCCCeEe
Q 042632 464 NYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRI-PLELSELNYLAIFN 542 (659)
Q Consensus 464 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ 542 (659)
++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 34444555555544 444445555555555555555543 33 4444555555555555554443 44455555555555
Q ss_pred ccCCccccCCC
Q 042632 543 VSYNDLLGPVP 553 (659)
Q Consensus 543 l~~N~l~~~~p 553 (659)
+++|++++.+|
T Consensus 540 L~~N~l~~~~~ 550 (567)
T 1dce_A 540 LQGNSLCQEEG 550 (567)
T ss_dssp CTTSGGGGSSS
T ss_pred ecCCcCCCCcc
Confidence 55555554433
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=1e-17 Score=155.15 Aligned_cols=181 Identities=21% Similarity=0.280 Sum_probs=126.1
Q ss_pred cEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCc-cccCCCCCcEEEccCCcCCcccchhhccccccccccCCC
Q 042632 342 RHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPE-PLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSF 420 (659)
Q Consensus 342 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 420 (659)
+.+++++|.++ .+|..+. +++++|++++|++++..+. .+..+++|++|++++|++++..|..|.+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56777777775 4555443 3788888888888765554 4788888888888888888777777665
Q ss_pred CCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcC
Q 042632 421 NGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHF 500 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 500 (659)
+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 77 ------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 77 ------------------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp ------------------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 56788899999999888888888999999999999999
Q ss_pred cccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccCCCCCCCCCCCCcCccCCCCCCCCCCCCCC
Q 042632 501 SGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGPVPNSRQFANFDENNYRGNPLLCGPPVLKN 580 (659)
Q Consensus 501 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~~~~~ 580 (659)
++..|..|..+++|+.|++++|++.+..+.... ...++...+..+...+..|.. +....-.++..+.+.|..+....
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~ 191 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEG 191 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---C
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCC
Confidence 988899999999999999999999866542110 011222234445555544433 22333345566777776544333
Q ss_pred C
Q 042632 581 C 581 (659)
Q Consensus 581 C 581 (659)
|
T Consensus 192 c 192 (192)
T 1w8a_A 192 C 192 (192)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.1e-17 Score=169.48 Aligned_cols=289 Identities=12% Similarity=0.013 Sum_probs=180.3
Q ss_pred CCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhc-------
Q 042632 97 QYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVI------- 169 (659)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~------- 169 (659)
+.+++.|.++++--. .-...+...+++|+.|+|++|++..........+.++.+.+..+ .+|+..+..
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 457888988875321 22223332378899999999988832222223333444444444 345555555
Q ss_pred -CCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccc----cccCCcCCCCCC
Q 042632 170 -LPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLF----VGQIFPKYMNLT 244 (659)
Q Consensus 170 -l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i----~~~~~~~~~~l~ 244 (659)
+++|+.+++.+ .++...+.+|..+++|+.+++.+|.+. .++...|..+.++..+....+.. ......+|.++.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77778887777 666566667777777777777777776 67777777766666666554321 112233444555
Q ss_pred CCC-EEEccCCCC-CccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEE
Q 042632 245 QLA-WLYLSDNQF-TGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILD 322 (659)
Q Consensus 245 ~L~-~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 322 (659)
.|+ .+.+..... .......-....++..+.+.++-...........+++|+.+++++|+++.....+|.++.+|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 555 344432211 000001111244556666655422211111112378888899988888877778888888888888
Q ss_pred ccCCcCcCcCCCCC-CCCCCc-EEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEc
Q 042632 323 ISGNKLYGPLEFSS-NHSSLR-HLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDI 394 (659)
Q Consensus 323 l~~n~l~~~~~~~~-~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 394 (659)
+++| +....+..+ .+++|+ .+++.+ .++...+.+|.++++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8887 555444444 788888 888887 666566678888888888888888888777778888888888763
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=7.8e-18 Score=164.29 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=113.3
Q ss_pred CCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEcc
Q 042632 316 QVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDIS 395 (659)
Q Consensus 316 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (659)
..+..++++++.+++.. ....+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 34444555555554333 22255666677777776663 33 56677777777777777774433 7777777777777
Q ss_pred CCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCc
Q 042632 396 CNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNE 475 (659)
Q Consensus 396 ~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 475 (659)
+|++++ +|... .++|+.|++++|+
T Consensus 94 ~N~l~~-l~~~~-------------------------------------------------------~~~L~~L~L~~N~ 117 (263)
T 1xeu_A 94 RNRLKN-LNGIP-------------------------------------------------------SACLSRLFLDNNE 117 (263)
T ss_dssp SSCCSC-CTTCC-------------------------------------------------------CSSCCEEECCSSC
T ss_pred CCccCC-cCccc-------------------------------------------------------cCcccEEEccCCc
Confidence 777763 22110 1467778888888
Q ss_pred CcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCccccC
Q 042632 476 LTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 476 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
+++ ++ .++.+++|+.|++++|++++. + .++.+++|+.|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 118 l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 118 LRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 774 33 577788888888888888754 3 577788888888888888755 5677788888888888888765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=5.4e-20 Score=198.90 Aligned_cols=203 Identities=20% Similarity=0.190 Sum_probs=138.9
Q ss_pred CCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCc-------------ccccCCccCCCCCCCcEEE-ccCCcCcCc
Q 042632 266 NAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNS-------------LEGDVSVPLSNLQVTRILD-ISGNKLYGP 331 (659)
Q Consensus 266 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~~ 331 (659)
..++|+.|++++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455555555555554 445555555555555554442 3334455566666666666 5554432
Q ss_pred CCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcccc
Q 042632 332 LEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNIS 411 (659)
Q Consensus 332 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 411 (659)
.|+.+.+++|.++.. +. ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.+
T Consensus 424 --------~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-- 484 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-- 484 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG--
T ss_pred --------hhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc--
Confidence 344555555555421 11 248888888888884 565 888888888888888887 67776655
Q ss_pred ccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCC
Q 042632 412 LWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELH 491 (659)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 491 (659)
+++|+.|+|++|++++ +| .++.+++|+
T Consensus 485 ---------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 485 ---------------------------------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp ---------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred ---------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 5678888888888885 56 788889999
Q ss_pred EEeCCCCcCcccC-CccccccCCCCEEECcCCcccccCCh---hhhcCCCCCeEec
Q 042632 492 ALNLSHNHFSGSI-PRSFSILKMIESMDLSYNELSGRIPL---ELSELNYLAIFNV 543 (659)
Q Consensus 492 ~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~l 543 (659)
.|+|++|++++.. |..++.+++|+.|+|++|++++..|. .+..+++|+.|++
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999998776 88889999999999999998866543 2345888888864
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2e-17 Score=167.60 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=133.2
Q ss_pred CCCCEEeCCCCcCcccCCccccC-CCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCcc
Q 042632 5 KNLVELNLSGNKFDGSLPQCLSN-LTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEH 83 (659)
Q Consensus 5 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 83 (659)
++++.|.++++ +.......+.. +++|++|||++|++. ... ..-+.++.++.+.+..|.+..
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~-~~~~~~~~~~~~~~~~~~I~~--------------- 86 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYS-GKAGTYPNGKFYIYMANFVPA--------------- 86 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEE-ESSSSSGGGCCEEECTTEECT---------------
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-Eec-CccccccccccccccccccCH---------------
Confidence 45777777754 22122223444 677888888888875 111 111122223444444442210
Q ss_pred ccccccchhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCC-CCCCccEEEcccCcC---c
Q 042632 84 CNISGTIASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPD-SKRDLLHLVISNNNF---I 159 (659)
Q Consensus 84 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l---~ 159 (659)
..+.+..+....++++|++|++.+ .++ .++...|.+|++|+.+++++|.+..+....+ .+.++..+....... .
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 000111111111255566666655 555 5555555556666666666555544433222 333333333332110 0
Q ss_pred ccCChhhhhcCCCCc-EEEcccCcccccCChhh----cCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccc
Q 042632 160 GTLPDNFGVILPELV-YLDMSQNSFVGSIPPST----GYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVG 234 (659)
Q Consensus 160 ~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~ 234 (659)
..+....+..+..|+ .+.+.... .++..+ ....+++.+.+.++-.. .-...+...+++|+.+++++|+++.
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred ccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcce
Confidence 011111111234444 33332211 111111 12334444444433211 1111111235556666666555555
Q ss_pred cCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCc-EEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCC
Q 042632 235 QIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLY-ILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLS 313 (659)
Q Consensus 235 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 313 (659)
+...+|.++++|+++++.+| ++.+.+.+|.++++|+ .+++.+ .++...+.+|..+++|+.+++++|.+....+.+|.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 55555556666666666555 5545555566666666 666655 44444455566666666666666666655555666
Q ss_pred CCCCCcEEE
Q 042632 314 NLQVTRILD 322 (659)
Q Consensus 314 ~l~~L~~L~ 322 (659)
++++|+.++
T Consensus 319 ~~~~L~~ly 327 (329)
T 3sb4_A 319 NGVPSKLIY 327 (329)
T ss_dssp TTCCCCEEE
T ss_pred CCcchhhhc
Confidence 666666554
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=8.4e-17 Score=149.83 Aligned_cols=151 Identities=13% Similarity=0.204 Sum_probs=105.7
Q ss_pred CCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEE
Q 042632 170 LPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWL 249 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (659)
+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++. +..+++|++|++++|++.+..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 567778888877777 445 5777778888888877665 4442 4677788888888888777667777777888888
Q ss_pred EccCCCCCccccccccCCCCCcEEEeeccc-ccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcC
Q 042632 250 YLSDNQFTGRLEEGLLNAPSLYILDVSNNM-LSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKL 328 (659)
Q Consensus 250 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 328 (659)
++++|++++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+.+. + .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 888888777667777777788888887776 54 333 567777777777777777642 2 556666666666666665
Q ss_pred c
Q 042632 329 Y 329 (659)
Q Consensus 329 ~ 329 (659)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.6e-17 Score=160.63 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEc
Q 042632 220 VSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLM 299 (659)
Q Consensus 220 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 299 (659)
.++..++++++.+.+.. .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34555566666665433 355566666666666666632 2 45556666666666666653322 556666666666
Q ss_pred cCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccC
Q 042632 300 SRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNI 379 (659)
Q Consensus 300 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 379 (659)
++|++.+..+ +.. ++|+.|++++|.+++. +....+++|+.|++++|++++. + .+..+++|++|++++|++++.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 6666553221 111 4555555555555432 2223444555555555554432 2 344445555555555555433
Q ss_pred CccccCCCCCcEEEccCCcCC
Q 042632 380 PEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 380 ~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
..+..+++|+.|++++|+++
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCccc
Confidence 33444445555555554443
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.1e-17 Score=149.85 Aligned_cols=131 Identities=21% Similarity=0.275 Sum_probs=99.5
Q ss_pred ceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCccccccccc
Q 042632 366 RALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTS 445 (659)
Q Consensus 366 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (659)
+++++++|.++ .+|..+. ++|++|++++|.++ .+|..|.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 46777777776 4554442 46778888888776 55555544
Q ss_pred ceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCccc
Q 042632 446 RNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELS 525 (659)
Q Consensus 446 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 525 (659)
+++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|.++
T Consensus 53 -----------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 53 -----------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp -----------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 567888888888888777777888888888888888888777778888888888888888888
Q ss_pred ccCChhhhcCCCCCeEeccCCccccCCC
Q 042632 526 GRIPLELSELNYLAIFNVSYNDLLGPVP 553 (659)
Q Consensus 526 ~~~p~~l~~l~~L~~L~l~~N~l~~~~p 553 (659)
+..+..|..+++|+.|++++|++.|...
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 116 VVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred eeChhhhhcCccccEEEeCCCCeecCCc
Confidence 6666678888888888888888887543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=146.30 Aligned_cols=113 Identities=26% Similarity=0.345 Sum_probs=103.9
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
.+.++.|++++|+++ .+|..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 457999999999999 7889999999999999999999988888999999999999999999988888999999999999
Q ss_pred ccCCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 543 VSYNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 543 l~~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+++|++++..+.. ..++.+..+++++|||.|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9999999876653 678889999999999999764
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.4e-16 Score=142.68 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=98.2
Q ss_pred CCCCceEecCCCccc-ccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccc
Q 042632 362 DSNLRALLLRGNNLQ-GNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSR 440 (659)
Q Consensus 362 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (659)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 356777777777776 55666667777777777777777643 22222
Q ss_pred cccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccC-CccccccCCCCEEEC
Q 042632 441 IKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSI-PRSFSILKMIESMDL 519 (659)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L 519 (659)
+++|+.|++++|++++.+|..+..+++|++|+|++|++++.. +..+..+++|+.|++
T Consensus 70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 567788888888887667777777888888888888887532 267788888888888
Q ss_pred cCCcccccCC---hhhhcCCCCCeEeccCCccccC
Q 042632 520 SYNELSGRIP---LELSELNYLAIFNVSYNDLLGP 551 (659)
Q Consensus 520 s~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~~~ 551 (659)
++|++++..+ ..+..+++|++|++++|.+...
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 8888885544 4778888888888888887664
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=1.7e-17 Score=185.12 Aligned_cols=97 Identities=27% Similarity=0.284 Sum_probs=48.5
Q ss_pred CccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCC
Q 042632 309 SVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRK 388 (659)
Q Consensus 309 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 388 (659)
+..+..++.|+.|++++|.+....+..+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 34444445555555555554433333334555555555555555 45555555555555555555555 44555555555
Q ss_pred CcEEEccCCcCCcccchhhc
Q 042632 389 LSIVDISCNNLNGSIPSCFT 408 (659)
Q Consensus 389 L~~L~Ls~n~l~~~~p~~~~ 408 (659)
|++|+|++|.++ .+|..|.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~ 313 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFG 313 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTT
T ss_pred CCEEECCCCCCC-ccChhhh
Confidence 555555555554 4444443
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.5e-16 Score=142.55 Aligned_cols=139 Identities=27% Similarity=0.262 Sum_probs=116.4
Q ss_pred CCCCCcEEEccCCcCC-CCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcccccccc
Q 042632 337 NHSSLRHLFLHNNSLN-GNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWME 415 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~ 415 (659)
.+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------ 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH------
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh------
Confidence 4467888889888887 67777788899999999999999855 67889999999999999998767766654
Q ss_pred ccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccC-ChhhhccccCCEEe
Q 042632 416 ESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDI-PSEIGLLQELHALN 494 (659)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ 494 (659)
+++|+.|++++|++++.. +..+..+++|+.|+
T Consensus 94 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 94 -----------------------------------------------LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp -----------------------------------------------CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred -----------------------------------------------CCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 678999999999999542 27889999999999
Q ss_pred CCCCcCcccCC---ccccccCCCCEEECcCCcccccCChh
Q 042632 495 LSHNHFSGSIP---RSFSILKMIESMDLSYNELSGRIPLE 531 (659)
Q Consensus 495 Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 531 (659)
+++|++++..+ ..+..+++|+.|++++|.+. .+|++
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999996554 48899999999999999987 55543
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.1e-16 Score=138.82 Aligned_cols=129 Identities=20% Similarity=0.231 Sum_probs=100.9
Q ss_pred CCCCceEecCCCccc-ccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccc
Q 042632 362 DSNLRALLLRGNNLQ-GNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSR 440 (659)
Q Consensus 362 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (659)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 367888888888887 56777778888888888888888744 33322
Q ss_pred cccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCccc-CCccccccCCCCEEEC
Q 042632 441 IKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGS-IPRSFSILKMIESMDL 519 (659)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 519 (659)
+++|+.|++++|++++.+|..++.+++|++|++++|++++. .+..+..+++|++|++
T Consensus 63 ----------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 63 ----------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 66788888888888876788788888899999999988863 3477888899999999
Q ss_pred cCCcccccCC---hhhhcCCCCCeEeccC
Q 042632 520 SYNELSGRIP---LELSELNYLAIFNVSY 545 (659)
Q Consensus 520 s~N~l~~~~p---~~l~~l~~L~~L~l~~ 545 (659)
++|++++..+ ..+..+++|+.|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999886655 5788889999988764
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=7.8e-15 Score=151.54 Aligned_cols=264 Identities=9% Similarity=0.020 Sum_probs=143.5
Q ss_pred CCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEEccC
Q 042632 28 LTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYIDLSH 107 (659)
Q Consensus 28 l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~Ls~ 107 (659)
+..++.+.+.++ ++ .|+..+|.++ +|+.+++..+ ++. +...+|.++ +|+.+++..
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~--------------------I~~~aF~~~-~L~~i~lp~ 166 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKS--------------------IGDMAFFNS-TVQEIVFPS 166 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCE--------------------ECTTTTTTC-CCCEEECCT
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccE--------------------ECHHhcCCC-CceEEEeCC
Confidence 455666666543 33 4555566654 5666666543 221 223344443 466666654
Q ss_pred ccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCcccccC
Q 042632 108 NNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFVGSI 187 (659)
Q Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 187 (659)
.++ .++...|.+|++|+.+++.+|.++.++...+.+.+|+.+.+..+ +. .++...+..+++|+.+++..+ ++...
T Consensus 167 -~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~ 241 (401)
T 4fdw_A 167 -TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIG 241 (401)
T ss_dssp -TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEEC
T ss_pred -Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcc
Confidence 444 45555555666666666666666555444444455555555533 33 344444444666777776654 44344
Q ss_pred ChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcccc-----ccCCcCCCCCCCCCEEEccCCCCCccccc
Q 042632 188 PPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFV-----GQIFPKYMNLTQLAWLYLSDNQFTGRLEE 262 (659)
Q Consensus 188 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 262 (659)
..+|.. .+|+.+.+. +.++ .++...|.+|++|+.+++.++.+. .....+|.++++|+.+.+. +.++.+...
T Consensus 242 ~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~ 317 (401)
T 4fdw_A 242 QEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG 317 (401)
T ss_dssp TTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTT
T ss_pred cccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhh
Confidence 445555 566666663 3454 566666666777777776665543 3444556666666666666 335545555
Q ss_pred cccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCC-CCcEEEccCCc
Q 042632 263 GLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQ-VTRILDISGNK 327 (659)
Q Consensus 263 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 327 (659)
+|.++++|+.+.+..+ ++.....+|..+ +|+.+++.+|.........|.+++ .++.+.+..+.
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6666666666666443 443445555555 666666666655544444454442 44455554443
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.3e-14 Score=149.88 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=63.7
Q ss_pred CCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCCCCccccccccCCCCCcEEE
Q 042632 195 ERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILD 274 (659)
Q Consensus 195 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 274 (659)
..++.+.+.+ .++ .++...|.++ +|+.+.+..+ +..+...+|.+. +|+.+.+.+ .++.+.+.+|.++++|+.++
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 4444444443 233 4445455443 4555555544 444444455552 455665554 44444455566666666666
Q ss_pred eecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccC
Q 042632 275 VSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISG 325 (659)
Q Consensus 275 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 325 (659)
+++|.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 665555543344444 455666666533 4444455566666666666554
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=8.7e-17 Score=179.43 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=88.2
Q ss_pred cccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCc
Q 042632 277 NNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIP 356 (659)
Q Consensus 277 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 356 (659)
.|.+. ..+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++.....+..+++|+.|+|++|.++ .+|
T Consensus 210 ~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp 286 (727)
T 4b8c_D 210 ENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLP 286 (727)
T ss_dssp -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCC
T ss_pred cccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccC
Confidence 33433 44555666666666666666665 4444455666777777777776643333446777888888888887 678
Q ss_pred hhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhcc
Q 042632 357 HLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTN 409 (659)
Q Consensus 357 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 409 (659)
..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 88888999999999999987 67877999999999999999999888887755
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-15 Score=138.34 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=62.6
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
+++|++|++++|++++..+..|+.+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45666677777776655555567777777777777777766666667777777777777777755555556677777777
Q ss_pred ccCCccccCCC
Q 042632 543 VSYNDLLGPVP 553 (659)
Q Consensus 543 l~~N~l~~~~p 553 (659)
+++|++.+.+|
T Consensus 131 l~~N~~~~~~~ 141 (177)
T 2o6r_A 131 LHTNPWDCSCP 141 (177)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCeeccCc
Confidence 77777776554
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=5.9e-16 Score=137.05 Aligned_cols=129 Identities=23% Similarity=0.270 Sum_probs=106.3
Q ss_pred CCCCcEEEccCCcCC-CCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 338 HSSLRHLFLHNNSLN-GNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 338 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------- 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK------- 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH-------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh-------
Confidence 467888888888887 67777788889999999999998855 67888999999999999998767766554
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc-CChhhhccccCCEEeC
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD-IPSEIGLLQELHALNL 495 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L 495 (659)
+++|+.|++++|++++. .+..++.+++|++|++
T Consensus 87 ----------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 87 ----------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp ----------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred ----------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 56899999999999863 3478899999999999
Q ss_pred CCCcCcccCC---ccccccCCCCEEECcC
Q 042632 496 SHNHFSGSIP---RSFSILKMIESMDLSY 521 (659)
Q Consensus 496 s~N~l~~~~p---~~~~~l~~L~~L~Ls~ 521 (659)
++|++++..+ ..+..+++|+.||+++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999986655 5788999999999864
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=7.5e-15 Score=134.03 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=104.4
Q ss_pred CcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCC
Q 042632 341 LRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSF 420 (659)
Q Consensus 341 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~ 420 (659)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 456777777776 344333 367888888888888666667788888999999988888555544544
Q ss_pred CCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcC
Q 042632 421 NGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHF 500 (659)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 500 (659)
+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 75 ------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 75 ------------------------------------------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 66889999999999977777788999999999999999
Q ss_pred cccCCccccccCCCCEEECcCCcccccCC
Q 042632 501 SGSIPRSFSILKMIESMDLSYNELSGRIP 529 (659)
Q Consensus 501 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 529 (659)
++..+..+..+++|+.|++++|++.+..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 97666677889999999999999986554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.4e-13 Score=142.81 Aligned_cols=315 Identities=10% Similarity=0.052 Sum_probs=191.8
Q ss_pred CChhhhhcCCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCC
Q 042632 162 LPDNFGVILPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYM 241 (659)
Q Consensus 162 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 241 (659)
+.+..|..+.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|.
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeee
Confidence 33444444667777777543 55455566777777777777644 44 666666777777776666543 3334445565
Q ss_pred CCCCCCEEEccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEE
Q 042632 242 NLTQLAWLYLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRIL 321 (659)
Q Consensus 242 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 321 (659)
++..++..... ........+|.++++|+.+.+.++... ....+|..+.+|+.+.+..+ +......+|.++..|+.+
T Consensus 138 ~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCc--cccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 55433322222 222244456777777777777655432 45566777777777777665 444555667777777777
Q ss_pred EccCCcCcCcCCCCCCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCc
Q 042632 322 DISGNKLYGPLEFSSNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNG 401 (659)
Q Consensus 322 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 401 (659)
.+..+... ..........|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+....+.+.
T Consensus 214 ~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~- 289 (394)
T 4fs7_A 214 EFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP- 289 (394)
T ss_dssp CCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-
T ss_pred ecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-
Confidence 66655432 2222334556777766543 22233456667777777777766544 45556677777777666554321
Q ss_pred ccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCC
Q 042632 402 SIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIP 481 (659)
Q Consensus 402 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 481 (659)
...|.. ..+|+.+.+..+ ++....
T Consensus 290 --~~~F~~-----------------------------------------------------~~~L~~i~l~~~-i~~I~~ 313 (394)
T 4fs7_A 290 --EKTFYG-----------------------------------------------------CSSLTEVKLLDS-VKFIGE 313 (394)
T ss_dssp --TTTTTT-----------------------------------------------------CTTCCEEEECTT-CCEECT
T ss_pred --cccccc-----------------------------------------------------cccccccccccc-cceech
Confidence 112222 456777777654 554566
Q ss_pred hhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCC
Q 042632 482 SEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYN 546 (659)
Q Consensus 482 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N 546 (659)
.+|.++++|+.++|.++ ++.....+|.++++|+.+++..+ ++......|.++++|+.+++..+
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 67888888888888644 66555677888888888888766 66566677888888888887654
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=6.5e-15 Score=134.26 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCc--cccccCCCCEEECcCCcccccCChh----hhcCC
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPR--SFSILKMIESMDLSYNELSGRIPLE----LSELN 536 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~ 536 (659)
+++|+.|++++|++++..+..++.+++|++|+|++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 566777777777777554455577788888888888886 4554 6777888888888888887 45553 77788
Q ss_pred CCCeEeccCCcccc
Q 042632 537 YLAIFNVSYNDLLG 550 (659)
Q Consensus 537 ~L~~L~l~~N~l~~ 550 (659)
+|+.||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887654
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.1e-13 Score=143.57 Aligned_cols=289 Identities=13% Similarity=0.056 Sum_probs=179.4
Q ss_pred hhhhhCCCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcC
Q 042632 91 ASFLQYQYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVIL 170 (659)
Q Consensus 91 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l 170 (659)
..+|.++++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +..+....+....+........ .. .+....+..+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~-~~-~i~~~aF~~c 161 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEG-VT-VIGDEAFATC 161 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTC
T ss_pred hhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecccccccccCcc-cc-ccchhhhccc
Confidence 345555666666666543 33 455555555666665555433 2222222221112222222211 11 2333334457
Q ss_pred CCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEE
Q 042632 171 PELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLY 250 (659)
Q Consensus 171 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 250 (659)
++|+.+.+.++... .....|..+.+|+.+.+..+ ++ .++...|..+..|+.+.+..+... +...+....+|+.+.
T Consensus 162 ~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ 236 (394)
T 4fs7_A 162 ESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNII 236 (394)
T ss_dssp TTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEE
T ss_pred CCCcEEecCCccce-eccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEE
Confidence 77888888665332 55566777888888888765 44 667777778888887777665432 123334456778777
Q ss_pred ccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcC
Q 042632 251 LSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYG 330 (659)
Q Consensus 251 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 330 (659)
+... ++.+...++..+..++.+.+..+... .....+..+..++.+....+.+ ....|..+.+|+.+.+.++ +..
T Consensus 237 ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 237 IPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp ECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCE
T ss_pred ECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cce
Confidence 7644 33355567777888888888776554 5566777788888887776543 2456777888888888765 433
Q ss_pred cCCCCC-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCC
Q 042632 331 PLEFSS-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCN 397 (659)
Q Consensus 331 ~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 397 (659)
.....+ .+.+|+.+++.++ ++.....+|.++.+|+.+.+..+ ++.....+|.++++|+.+++..+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 333333 7788888888654 55455678888999999999876 66566778899999999988654
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.5e-16 Score=148.23 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=109.3
Q ss_pred CchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccccc
Q 042632 355 IPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDAS 434 (659)
Q Consensus 355 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (659)
+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~------------------------- 91 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV------------------------- 91 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-------------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-------------------------
Confidence 34488889999999999999985 56 7888899999999999987 55654433
Q ss_pred CCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCC-ccccccCC
Q 042632 435 GRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIP-RSFSILKM 513 (659)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~ 513 (659)
+++|+.|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++
T Consensus 92 ----------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~ 141 (198)
T 1ds9_A 92 ----------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDK 141 (198)
T ss_dssp ----------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTT
T ss_pred ----------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCC
Confidence 5679999999999985 44 68889999999999999985433 47888999
Q ss_pred CCEEECcCCcccccCChh----------hhcCCCCCeEeccCCcccc
Q 042632 514 IESMDLSYNELSGRIPLE----------LSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 514 L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~l~~N~l~~ 550 (659)
|+.|++++|++.+..|.. +..+++|+.|| +|+++.
T Consensus 142 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999999998776653 78889999887 666654
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=2.2e-14 Score=130.69 Aligned_cols=132 Identities=18% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcCCcccchhhccccccccc
Q 042632 337 NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEE 416 (659)
Q Consensus 337 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~ 416 (659)
.+++|+.|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 86 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA------- 86 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-------
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-------
Confidence 56677888888887773 444333344899999999998865 56888899999999999988544444444
Q ss_pred cCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCCh--hhhccccCCEEe
Q 042632 417 SDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPS--EIGLLQELHALN 494 (659)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~ 494 (659)
+++|+.|++++|+++ .+|. .++.+++|+.|+
T Consensus 87 ----------------------------------------------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 87 ----------------------------------------------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp ----------------------------------------------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred ----------------------------------------------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 678999999999997 5555 788899999999
Q ss_pred CCCCcCcccCCcc----ccccCCCCEEECcCCcccc
Q 042632 495 LSHNHFSGSIPRS----FSILKMIESMDLSYNELSG 526 (659)
Q Consensus 495 Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~ 526 (659)
+++|+++ .+|.. +..+++|+.||+++|....
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999998 55664 8899999999999998763
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=4.3e-14 Score=127.76 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=82.8
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
.+.++.|+|++|+|++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 45789999999999988888999999999999999999987777889999999999999999977777799999999999
Q ss_pred ccCCccccCCCC
Q 042632 543 VSYNDLLGPVPN 554 (659)
Q Consensus 543 l~~N~l~~~~p~ 554 (659)
+++|++++.++.
T Consensus 109 L~~N~~~c~c~~ 120 (170)
T 3g39_A 109 LLNNPWDCACSD 120 (170)
T ss_dssp CCSSCBCTTBGG
T ss_pred eCCCCCCCCchh
Confidence 999999987653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=7.1e-14 Score=126.31 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=97.7
Q ss_pred cccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEecc
Q 042632 465 YMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVS 544 (659)
Q Consensus 465 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 544 (659)
..+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999999999 5776653 889999999999998889999999999999999999997777788999999999999
Q ss_pred CCccccCCCCC-CCCCCCCcCccCCCCCCCCCC
Q 042632 545 YNDLLGPVPNS-RQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 545 ~N~l~~~~p~~-~~~~~l~~~~~~~N~~~c~~~ 576 (659)
+|++++.++.. ..+.+++.+++++||+.|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999977753 678899999999999999764
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.3e-13 Score=124.97 Aligned_cols=91 Identities=20% Similarity=0.159 Sum_probs=80.7
Q ss_pred cccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
.+.|+.|+|++|++++..|..|+.+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 45789999999999988888999999999999999999977667789999999999999999966666689999999999
Q ss_pred ccCCccccCCC
Q 042632 543 VSYNDLLGPVP 553 (659)
Q Consensus 543 l~~N~l~~~~p 553 (659)
+++|++.+.++
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999998654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.8e-16 Score=144.80 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=119.1
Q ss_pred hhcCCCCceEecCCCcccccCCc------cccCCCCCcEEEccCCcCCcccchhhccccccccccCCCCCceeecccccc
Q 042632 359 INEDSNLRALLLRGNNLQGNIPE------PLCHLRKLSIVDISCNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLD 432 (659)
Q Consensus 359 ~~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 432 (659)
+...+.++.++++++.+.+..|. .+..+++|++|++++|.+++ +| .+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----------------------- 68 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----------------------- 68 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-----------------------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-----------------------
Confidence 45667888888888888877776 88999999999999999985 55 5544
Q ss_pred ccCCcccccccccceEeeeccccccccccccccccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccC
Q 042632 433 ASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILK 512 (659)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 512 (659)
+++|+.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..++
T Consensus 69 ------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 69 ------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp ------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred ------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 678999999999999 678888889999999999999995 45 689999
Q ss_pred CCCEEECcCCcccccCC-hhhhcCCCCCeEeccCCccccCCCC
Q 042632 513 MIESMDLSYNELSGRIP-LELSELNYLAIFNVSYNDLLGPVPN 554 (659)
Q Consensus 513 ~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~p~ 554 (659)
+|+.|++++|.+++..+ ..+..+++|++|++++|++++.+|.
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 99999999999985433 5788999999999999999998765
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2e-13 Score=123.70 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=96.4
Q ss_pred ccEEEccCCcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccC
Q 042632 466 MTGLDLSSNELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSY 545 (659)
Q Consensus 466 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 545 (659)
-+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999998 6777664 8999999999999988899999999999999999999976666789999999999999
Q ss_pred CccccCCCC-CCCCCCCCcCccCCCCCCCCCC
Q 042632 546 NDLLGPVPN-SRQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 546 N~l~~~~p~-~~~~~~l~~~~~~~N~~~c~~~ 576 (659)
|++++.++. ...++.++.+++++||+.|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999987775 4678899999999999999764
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=1.2e-11 Score=128.16 Aligned_cols=336 Identities=10% Similarity=0.079 Sum_probs=171.0
Q ss_pred cccCCccccCCC-CCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhC
Q 042632 18 DGSLPQCLSNLT-YLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQY 96 (659)
Q Consensus 18 ~~~~~~~~~~l~-~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~ 96 (659)
+.+...+|.+++ .|+.+.+..+ ++ .|...+|.++++|+.+.+..|.-. .++.+...+|.+
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~-----------------~l~~Ig~~aF~~ 112 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPS-----------------CVKKIGRQAFMF 112 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCC-----------------CCCEECTTTTTT
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCC-----------------eeeEechhhchh
Confidence 334455677764 4788877654 54 677677888888888877765311 112223445556
Q ss_pred CCCCCEEEccCccccccCchHHhhcCCCCCEEEccCcccccccC-CCCCCCCccEEEcccCcCcccCChhhhhcCCCCcE
Q 042632 97 QYDLRYIDLSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLH-LPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVY 175 (659)
Q Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 175 (659)
+.+|+.+.+..+ ++ .++...|..+.+|+.+.+..+. ..+.. ....+..|+.+.+..+ +. .+....+. ...|+.
T Consensus 113 c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~ 186 (394)
T 4gt6_A 113 CSELTDIPILDS-VT-EIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQ 186 (394)
T ss_dssp CTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSE
T ss_pred cccceeeccCCc-cc-eehhhhhhhhccccccccccee-eeecccceecccccccccccce-ee-Eecccccc-ccceeE
Confidence 666666555443 33 4455555566666666664332 21211 1224445555555433 12 22333332 345555
Q ss_pred EEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEccCCC
Q 042632 176 LDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDNQ 255 (659)
Q Consensus 176 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 255 (659)
+.+..+-.. ....++..+..++.......... .+...++........- ...+.....+..+.+.. .
T Consensus 187 i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~-~ 252 (394)
T 4gt6_A 187 IHIPAKVTR-IGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN-G 252 (394)
T ss_dssp EEECTTCCE-ECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-T
T ss_pred EEECCcccc-cccchhhhccccceecccccccc-cccceeeccccccccc-----------ccccccccccceEEcCC-c
Confidence 555443222 33444555555555544443332 2221111111000000 00011222333333322 2
Q ss_pred CCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcCCCC
Q 042632 256 FTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPLEFS 335 (659)
Q Consensus 256 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 335 (659)
++.+...+|.++..|+.+.+..+... ....+|..++.|+.+.+.. .+......+|.++.+|+.+++..+ ++......
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 23344456666777777776554433 4455666777777777753 344455666777777777777654 33333333
Q ss_pred C-CCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEccCCcC
Q 042632 336 S-NHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDISCNNL 399 (659)
Q Consensus 336 ~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 399 (659)
+ .+.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 3 6777888887644 554556788888889998888876542 3566777888888776654
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=4.5e-11 Score=123.95 Aligned_cols=307 Identities=9% Similarity=0.048 Sum_probs=147.3
Q ss_pred CcEEEcccCcccccCChhhcCCCCCCEEeCcCCc---CccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEE
Q 042632 173 LVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNN---FSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWL 249 (659)
Q Consensus 173 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (659)
|+.+.+.++ ++..-..+|.++++|+.+.+..|. ++ .++...|..+.+|+.+.+..+ +......+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 555555433 333444455555555555555442 33 455555555555555554433 333344455555666666
Q ss_pred EccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCc
Q 042632 250 YLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLY 329 (659)
Q Consensus 250 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 329 (659)
.+..+ +..+...+|..+..|+.+.+..+ ++.....+|. ...|+.+.+..+-. .....+|..+..++..........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceecccccccc
Confidence 65433 22244445555566666655443 2212333333 24455555554322 233445555555555544433322
Q ss_pred CcCCCC--------------CCCCCCcEEEccCCcCCCCCchhhhcCCCCceEecCCCcccccCCccccCCCCCcEEEcc
Q 042632 330 GPLEFS--------------SNHSSLRHLFLHNNSLNGNIPHLINEDSNLRALLLRGNNLQGNIPEPLCHLRKLSIVDIS 395 (659)
Q Consensus 330 ~~~~~~--------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 395 (659)
...... .....+..+.+.. .++.....+|.++.+|+.+.+.++... ....+|.+++.|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC
Confidence 111000 0112223333322 122233345666666776666554433 445556666666666664
Q ss_pred CCcCCcccchhhccccccccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCc
Q 042632 396 CNNLNGSIPSCFTNISLWMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNE 475 (659)
Q Consensus 396 ~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 475 (659)
+.++.....+|.+ +.+|+.+++..+
T Consensus 297 -~~i~~I~~~aF~~-----------------------------------------------------c~~L~~i~lp~~- 321 (394)
T 4gt6_A 297 -SRITELPESVFAG-----------------------------------------------------CISLKSIDIPEG- 321 (394)
T ss_dssp -TTCCEECTTTTTT-----------------------------------------------------CTTCCEEECCTT-
T ss_pred -CcccccCceeecC-----------------------------------------------------CCCcCEEEeCCc-
Confidence 3333222333333 345666666543
Q ss_pred CcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccCCc
Q 042632 476 LTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSYND 547 (659)
Q Consensus 476 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 547 (659)
++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.+++.++.... ..+.....|+.+.+..|.
T Consensus 322 v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 322 ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 55455566777777777777544 544445567777777777777665431 344555666666655543
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=1.6e-13 Score=140.40 Aligned_cols=164 Identities=17% Similarity=0.176 Sum_probs=96.3
Q ss_pred CCCcEEEccCCcCCCCCchhhhc-----CCCCceEecCCCcccccCCccc-cCCCCCcEEEccCCcCCcccchhhccccc
Q 042632 339 SSLRHLFLHNNSLNGNIPHLINE-----DSNLRALLLRGNNLQGNIPEPL-CHLRKLSIVDISCNNLNGSIPSCFTNISL 412 (659)
Q Consensus 339 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 412 (659)
+.|+.|++++|.++......+.. .++|++|+|++|.++......+ ..+++|+.|+|++|.++......+...-
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L- 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL- 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH-
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH-
Confidence 34556666666655332222222 2567777777776653322222 2245677777777777643333332210
Q ss_pred cccccCCCCCceeeccccccccCCcccccccccceEeeeccccccccccccccccEEEccCCcCccc----CChhhhccc
Q 042632 413 WMEESDSFNGFVIWHGILLDASGRRLSRIKSTSRNKFMAKNRYESYKGDVLNYMTGLDLSSNELTGD----IPSEIGLLQ 488 (659)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~ 488 (659)
....+.|+.|+|++|.+++. ++..+..++
T Consensus 151 -----------------------------------------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 151 -----------------------------------------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp -----------------------------------------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred -----------------------------------------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence 00135677778887777642 334446677
Q ss_pred cCCEEeCCCCcCcccC----CccccccCCCCEEECcCCccccc----CChhhhcCCCCCeEeccCCcccc
Q 042632 489 ELHALNLSHNHFSGSI----PRSFSILKMIESMDLSYNELSGR----IPLELSELNYLAIFNVSYNDLLG 550 (659)
Q Consensus 489 ~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~ 550 (659)
+|++|+|++|.+++.. +..+...++|++|+|++|.++.. +...+...++|++|++++|+++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 7888888888776432 45566677788888888887643 33344556778888888887764
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=4.4e-12 Score=129.31 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=41.7
Q ss_pred ccccEEEccC-CcCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEe
Q 042632 464 NYMTGLDLSS-NELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFN 542 (659)
Q Consensus 464 ~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 542 (659)
++|+.|+|++ |++++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++..+..+..++ |+.|+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~ 109 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV 109 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence 3455555553 555544444455555555555555555544444455555555555555555433333333333 55555
Q ss_pred ccCCcccc
Q 042632 543 VSYNDLLG 550 (659)
Q Consensus 543 l~~N~l~~ 550 (659)
+++|++.+
T Consensus 110 l~~N~~~c 117 (347)
T 2ifg_A 110 LSGNPLHC 117 (347)
T ss_dssp CCSSCCCC
T ss_pred eeCCCccC
Confidence 55555544
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=3.2e-12 Score=130.36 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=93.1
Q ss_pred EEEccCC-cCcccCChhhhccccCCEEeCCC-CcCcccCCccccccCCCCEEECcCCcccccCChhhhcCCCCCeEeccC
Q 042632 468 GLDLSSN-ELTGDIPSEIGLLQELHALNLSH-NHFSGSIPRSFSILKMIESMDLSYNELSGRIPLELSELNYLAIFNVSY 545 (659)
Q Consensus 468 ~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~ 545 (659)
.++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4688888 888 5787 99999999999996 999988888999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCcCccCCCCCCCCCC
Q 042632 546 NDLLGPVPNSRQFANFDENNYRGNPLLCGPP 576 (659)
Q Consensus 546 N~l~~~~p~~~~~~~l~~~~~~~N~~~c~~~ 576 (659)
|+|++.++.......+..+++.+|++.|.|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9999876655433448889999999999763
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=9.5e-13 Score=134.57 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=27.7
Q ss_pred CCCcEEEcccCcccccCChhhcC-----CCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCcccc
Q 042632 171 PELVYLDMSQNSFVGSIPPSTGY-----MERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFV 233 (659)
Q Consensus 171 ~~L~~L~L~~n~i~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~ 233 (659)
+.|++|++++|.++......+.. .++|++|++++|.+.......+...+++|+.|++++|.+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~ 139 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence 45555555555554322222221 1455555555555542222222223344455555555443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=2.2e-09 Score=110.65 Aligned_cols=302 Identities=12% Similarity=0.055 Sum_probs=150.2
Q ss_pred ccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCCCEEE
Q 042632 25 LSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDLRYID 104 (659)
Q Consensus 25 ~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L~~L~ 104 (659)
+....+|+.+.+... ++ .|+..+|.++.+|+.+++..+ ++. +...+|.++ +|+.+.
T Consensus 42 ~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~--------------------Ig~~aF~~c-~l~~i~ 97 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTS--------------------IGDGAFADT-KLQSYT 97 (379)
T ss_dssp GGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCE--------------------ECTTTTTTC-CCCEEE
T ss_pred cccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceE--------------------echhhhcCC-CCceEE
Confidence 444556777666533 44 566667777777777777543 221 122334443 344444
Q ss_pred ccCccccccCchHHhhcCCCCCEEEccCcccccccCCCCCCCCccEEEcccCcCcccCChhhhhcCCCCcEEEcccCccc
Q 042632 105 LSHNNLAGTIPTWLLQNNTKLEILFLFNNFLTGRLHLPDSKRDLLHLVISNNNFIGTLPDNFGVILPELVYLDMSQNSFV 184 (659)
Q Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 184 (659)
+..+ ++ .++...|.. .+|+.+.+..+ ++......+....++.+.+..+ ++ .+....+..+..++...+..+...
T Consensus 98 ~~~~-l~-~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~ 171 (379)
T 4h09_A 98 GMER-VK-KFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKN 171 (379)
T ss_dssp ECTT-CC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSS
T ss_pred CCce-ee-Eeccceecc-CCcccccCCCc-cccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccce
Confidence 4322 22 344444422 34555555433 2222222222233444433322 11 122222222445555544432211
Q ss_pred c------------cCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEEEcc
Q 042632 185 G------------SIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLS 252 (659)
Q Consensus 185 ~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 252 (659)
. .....+.....+..+.+..... .+....+..+..|+.+.+..+ +......+|.++..|+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp 248 (379)
T 4h09_A 172 YVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP 248 (379)
T ss_dssp EEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC
T ss_pred eecccceecccccceecccccccccccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcC
Confidence 0 1112233344445544443322 233333455666666666543 333444556666677777665
Q ss_pred CCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCCcccccCCccCCCCCCCcEEEccCCcCcCcC
Q 042632 253 DNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRNSLEGDVSVPLSNLQVTRILDISGNKLYGPL 332 (659)
Q Consensus 253 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 332 (659)
.+ ++.+...+|.++.+|+.+.+..+ +.......|..+++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++...
T Consensus 249 ~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 249 KN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred CC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence 54 44455566666777777776543 33344556666777777777766666556666777777777777644 33333
Q ss_pred CCCC-CCCCCcEEEccCCcCCCCCchhhhcCC
Q 042632 333 EFSS-NHSSLRHLFLHNNSLNGNIPHLINEDS 363 (659)
Q Consensus 333 ~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~ 363 (659)
...+ .+.+|+.+.+..+ ++.....+|.++.
T Consensus 326 ~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred HHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 3333 6677777766543 4434445666553
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=6.1e-09 Score=107.27 Aligned_cols=124 Identities=8% Similarity=-0.038 Sum_probs=59.7
Q ss_pred CCCCcEEEcccCcccccCChhhcCCCCCCEEeCcCCcCccccChhhhhCCCCCCEEEccCccccccCCcCCCCCCCCCEE
Q 042632 170 LPELVYLDMSQNSFVGSIPPSTGYMERLLFLDLSSNNFSGELPKQFLTGCVSLEFMNLSHNLFVGQIFPKYMNLTQLAWL 249 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 249 (659)
..+|+.+.+... ++.+...+|.++.+|+.+.+..+ ++ .++...|.++ +|+.+.+..+ +......+|... +|+.+
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i 118 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDF 118 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEE
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccccc
Confidence 345666655432 44344455666666666666543 44 5555556555 4555555432 333333444432 56666
Q ss_pred EccCCCCCccccccccCCCCCcEEEeecccccCCCChhhhCCCCCCEEEccCC
Q 042632 250 YLSDNQFTGRLEEGLLNAPSLYILDVSNNMLSGQLPHWAGNFSNLDVLLMSRN 302 (659)
Q Consensus 250 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 302 (659)
.+..+ +......+|... +++.+.+..+ ++......+..+..++.+.+..+
T Consensus 119 ~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccc
Confidence 66543 222333333332 4444444332 22233444555555555555443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=9.3e-10 Score=111.33 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=45.8
Q ss_pred cccccEEEccCCcCcccCChhhh---ccccCCEEeCCCCcCccc----CCccccccCCCCEEECcCCcccccCChhhhc-
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIG---LLQELHALNLSHNHFSGS----IPRSFSILKMIESMDLSYNELSGRIPLELSE- 534 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 534 (659)
+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45566666666666543333332 356666666666666642 2333445667777777777666443333332
Q ss_pred CCCCCeEeccCCc
Q 042632 535 LNYLAIFNVSYND 547 (659)
Q Consensus 535 l~~L~~L~l~~N~ 547 (659)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456666665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.2e-09 Score=108.62 Aligned_cols=84 Identities=19% Similarity=0.261 Sum_probs=42.0
Q ss_pred CCCCcEEEcccCcccccCChhhc---CCCCCCEEeCcCCcCccccChhhh---hCCCCCCEEEccCccccccCCcCCCC-
Q 042632 170 LPELVYLDMSQNSFVGSIPPSTG---YMERLLFLDLSSNNFSGELPKQFL---TGCVSLEFMNLSHNLFVGQIFPKYMN- 242 (659)
Q Consensus 170 l~~L~~L~L~~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~---~~l~~L~~L~l~~n~i~~~~~~~~~~- 242 (659)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+..+..+. ..+++|+.|++++|.++......+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 45666666666655432222222 355666666666666532222221 23466677777666665433222222
Q ss_pred CCCCCEEEccCCC
Q 042632 243 LTQLAWLYLSDNQ 255 (659)
Q Consensus 243 l~~L~~L~l~~n~ 255 (659)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2446666554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=2.8e-08 Score=90.59 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=26.0
Q ss_pred hhhhcCCCCceEecCCC-ccccc----CCccccCCCCCcEEEccCCcCC
Q 042632 357 HLINEDSNLRALLLRGN-NLQGN----IPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 357 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
..+...++|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 34455666777777776 66432 2334455566666666666665
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=4.8e-08 Score=89.03 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=64.4
Q ss_pred ccccCCCCCCEEECCCC-CCcCC----CChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCC
Q 042632 23 QCLSNLTYLRVLNLSSN-QLSGS----LPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQ 97 (659)
Q Consensus 23 ~~~~~l~~L~~L~Ls~n-~l~~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l 97 (659)
..+...+.|++|+|++| .+.+. +. ..+...++|++|+|++|.+...... .+...+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n~i~~~g~~----------------~l~~~L~~n 92 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGTRSNDPVAF----------------ALAEMLKVN 92 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTSCCCHHHHH----------------HHHHHHHHC
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCCCCChHHHH----------------HHHHHHHhC
Confidence 34555666777777776 65421 22 3455566677777777666522110 133445555
Q ss_pred CCCCEEEccCccccccCchH---HhhcCCCCCEEEc--cCccccccc-----CCCCCCCCccEEEcccCcCc
Q 042632 98 YDLRYIDLSHNNLAGTIPTW---LLQNNTKLEILFL--FNNFLTGRL-----HLPDSKRDLLHLVISNNNFI 159 (659)
Q Consensus 98 ~~L~~L~Ls~n~l~~~~~~~---~~~~l~~L~~L~L--~~n~i~~~~-----~~~~~~~~L~~L~l~~n~l~ 159 (659)
+.|++|+|++|.+++..... .....++|++|++ ++|.+.... ......++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66777777777666321111 1224556777777 666665421 11113466777777777653
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=2.1e-07 Score=88.96 Aligned_cols=78 Identities=26% Similarity=0.290 Sum_probs=58.9
Q ss_pred cccccEEEccCCcCcc--cCChhhhccccCCEEeCCCCcCcccCCccccccC--CCCEEECcCCcccccCCh-------h
Q 042632 463 LNYMTGLDLSSNELTG--DIPSEIGLLQELHALNLSHNHFSGSIPRSFSILK--MIESMDLSYNELSGRIPL-------E 531 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~ 531 (659)
++.|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|+|++|++.+.+|+ .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 6788888888888886 4456777888888888888888854 3344444 888888888888876652 3
Q ss_pred hhcCCCCCeEe
Q 042632 532 LSELNYLAIFN 542 (659)
Q Consensus 532 l~~l~~L~~L~ 542 (659)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56788888776
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=1.1e-07 Score=91.10 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=29.4
Q ss_pred cccccEEEccCCcCcccCChhhhccc--cCCEEeCCCCcCcccCC-------ccccccCCCCEEE
Q 042632 463 LNYMTGLDLSSNELTGDIPSEIGLLQ--ELHALNLSHNHFSGSIP-------RSFSILKMIESMD 518 (659)
Q Consensus 463 l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~ 518 (659)
+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+..| ..+..+++|+.||
T Consensus 195 l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 195 APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 44566666666666543 2233333 66666666666665444 2345566666654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=5.6e-07 Score=79.61 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=70.5
Q ss_pred ccccEEEccCCcCcccCChhhhccccCCEEeCCCCc-CcccCCcccccc----CCCCEEECcCCc-ccccCChhhhcCCC
Q 042632 464 NYMTGLDLSSNELTGDIPSEIGLLQELHALNLSHNH-FSGSIPRSFSIL----KMIESMDLSYNE-LSGRIPLELSELNY 537 (659)
Q Consensus 464 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~ 537 (659)
..|+.||+++|.++...-..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 469999999999998777788999999999999996 776544555554 479999999995 88766677888999
Q ss_pred CCeEeccCCc
Q 042632 538 LAIFNVSYND 547 (659)
Q Consensus 538 L~~L~l~~N~ 547 (659)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=6.9e-06 Score=72.63 Aligned_cols=34 Identities=9% Similarity=0.132 Sum_probs=14.3
Q ss_pred CCCEEEccCccccccCCcCCCCCCCCCEEEccCC
Q 042632 221 SLEFMNLSHNLFVGQIFPKYMNLTQLAWLYLSDN 254 (659)
Q Consensus 221 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 254 (659)
.|+.||+++|.++......+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333334444444444444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=7.7e-05 Score=67.23 Aligned_cols=41 Identities=10% Similarity=0.369 Sum_probs=21.2
Q ss_pred hcCCCCceEecCCC-ccccc----CCccccCCCCCcEEEccCCcCC
Q 042632 360 NEDSNLRALLLRGN-NLQGN----IPEPLCHLRKLSIVDISCNNLN 400 (659)
Q Consensus 360 ~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 400 (659)
..-+.|++|+|++| .|... +.+.+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 33455666666653 44321 2234444556666666666654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00026 Score=63.75 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=56.7
Q ss_pred cCCCCCCEEECCCC-CCcC----CCChhhhcCCCCCCEEEccCcccccccChhhhccCCCCccccccccchhhhhCCCCC
Q 042632 26 SNLTYLRVLNLSSN-QLSG----SLPISVFANLTSLEYLSLSDKKFQGSFSLSVLANHSRLEHCNISGTIASFLQYQYDL 100 (659)
Q Consensus 26 ~~l~~L~~L~Ls~n-~l~~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~~~l~~~~~~~l~~l~~L 100 (659)
.+-+.|++|+|++| +|.+ .+. .++..-+.|+.|+|++|.+...-.. .+...+..-+.|
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~----------------alA~aL~~N~tL 100 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEAR----------------GLIELIETSPSL 100 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHT----------------THHHHHHHCSSC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHH----------------HHHHHHhcCCcc
Confidence 34456666666664 5431 022 3455556666666666666522110 134455555666
Q ss_pred CEEEccCccccccCchHH---hhcCCCCCEEEccCccc---ccc-----cCCCCCCCCccEEEcccCc
Q 042632 101 RYIDLSHNNLAGTIPTWL---LQNNTKLEILFLFNNFL---TGR-----LHLPDSKRDLLHLVISNNN 157 (659)
Q Consensus 101 ~~L~Ls~n~l~~~~~~~~---~~~l~~L~~L~L~~n~i---~~~-----~~~~~~~~~L~~L~l~~n~ 157 (659)
++|+|++|.|.+.....+ ...-+.|++|+|++|.. ... ......-+.|++|+++.+.
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 666666666663222221 12334566666664422 211 0011134566677776554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.08 E-value=0.00099 Score=55.99 Aligned_cols=55 Identities=20% Similarity=0.286 Sum_probs=26.9
Q ss_pred EEEccCCcCc-ccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcCCcc
Q 042632 468 GLDLSSNELT-GDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSYNEL 524 (659)
Q Consensus 468 ~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 524 (659)
.+|.++++++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4566666554 23343221 2355555555555544444455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.0011 Score=55.70 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=48.9
Q ss_pred CEEeCCCCcCc-ccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCcccc
Q 042632 8 VELNLSGNKFD-GSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDKKFQ 67 (659)
Q Consensus 8 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~ 67 (659)
+.++.++++++ ..+|..+. ++|++|+|++|+|+ .+|.+.|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 47889999886 35676554 37999999999998 899899999999999999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=71.41 E-value=4 Score=31.80 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCcCcccCCccccCCCCCCEEECCCCCCcCCCChhhhcCCCCCCEEEccCc
Q 042632 14 GNKFDGSLPQCLSNLTYLRVLNLSSNQLSGSLPISVFANLTSLEYLSLSDK 64 (659)
Q Consensus 14 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~l~~~~~~~l~~L~~L~L~~n 64 (659)
+..++.+...+|.+|+.|+.+.+-.+ ++ .|...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 45677777889999999999999876 34 677789999999999999764
No 166
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=46.17 E-value=30 Score=21.21 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHHHH
Q 042632 608 WSFAASYVAVILGLMAI 624 (659)
Q Consensus 608 ~~~~~~~~~~~~~~~~~ 624 (659)
..+.++.++++.++++.
T Consensus 14 AGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 34444444444433333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.81 E-value=50 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=24.8
Q ss_pred cCcccCChhhhccccCCEEeCCCCcCcccCCccccccCCCCEEECcC
Q 042632 475 ELTGDIPSEIGLLQELHALNLSHNHFSGSIPRSFSILKMIESMDLSY 521 (659)
Q Consensus 475 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 521 (659)
.++.+...+|.++++|+.+.|-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344444455666666666666543 3324445566666666655544
No 168
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=33.66 E-value=67 Score=18.83 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 042632 610 FAASYVAVILGLMAILLLNSY 630 (659)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~ 630 (659)
+.+|.++++..+-..++|++.
T Consensus 12 ~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEcc
Confidence 344555444444444544443
No 169
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=31.23 E-value=16 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=10.1
Q ss_pred hhhhhhhhhhhhhhc
Q 042632 629 SYWRRQWFLLVDACI 643 (659)
Q Consensus 629 ~~~~~~~~~~~~~~~ 643 (659)
--||.||..|+++..
T Consensus 9 aiwrawyiqyve~~~ 23 (26)
T 4gnt_B 9 AIWRAWYIQYVQRXX 23 (26)
T ss_dssp HHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhc
Confidence 458888888887654
No 170
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=27.59 E-value=74 Score=18.91 Aligned_cols=15 Identities=7% Similarity=-0.161 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHH
Q 042632 611 AASYVAVILGLMAIL 625 (659)
Q Consensus 611 ~~~~~~~~~~~~~~~ 625 (659)
...+++++|..+..+
T Consensus 15 lg~~I~i~W~~vf~l 29 (34)
T 3s8f_C 15 LTLTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHee
Confidence 344444555554433
Done!