BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042633
(428 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/418 (26%), Positives = 197/418 (47%), Gaps = 45/418 (10%)
Query: 34 IFKTPKILLRHNESAYIPHAFSFGPFHCKNEQLKLTQRIKWKYMQGILRRSPDPHLKWRE 93
IF+ P+ + N AY P S GP+H + L++ Q+ K + +Q L + ++
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107
Query: 94 LVDAIASLKDPARQCYAGSIDLDDREFIEVLVLDGCFIIELFRKDCDILPKEPDDPIFAM 153
LV A+ L+D R+ Y+ + + + ++VLDGCFI+ +F + + +DPIF++
Sbjct: 108 LVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMSGNI-ELSEDPIFSI 165
Query: 154 SCFLEYLNHDLILLENQIPWLVLERLF---SLTMAPDSERKSLIMVTLEYFANIFSSKKP 210
L + DL+LLENQ+P+ VL+ L+ + ++ D R + +F N +
Sbjct: 166 PWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSDLNR-----IAFHFFKNPIDKEGS 220
Query: 211 DETKPEQFEVRNVKHIIDLLRHSLV---------------LPLEKGYKCSNRKREWDICP 255
K ++ KH++DL+R + + + L +G + + P
Sbjct: 221 YWEKHRNYK---AKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVP 277
Query: 256 ---SAMTLQESGIK--LQRVNSASILDIKFRNGVLEIPPLLIQETTETLFRNLISFEQCC 310
SA L+ GIK L+R SIL+++ + L+IP L + F N ++FEQ
Sbjct: 278 LILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCVAFEQFY 337
Query: 311 PNYEPIVTSYAKLMDSLIDTNKDV------KLLFEYHLIDNWLNIGDVTQFFKKLYYDA- 363
+ +T+Y M L++ +DV KL+ E H N +V++FFK + D
Sbjct: 338 TDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSN----NEVSEFFKTISKDVV 393
Query: 364 -RVKNFYYLPVCQEVNLYCRRWRSRLRYAYTHRYCGSPWAIVSQVVGTILLILAILQT 420
V Y V + VN Y ++W + L + H + SPW +S +++L +LQ+
Sbjct: 394 FEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQS 451
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 30 LNASIFKTPKILLRHNESAYIPHAFSFGPFHCKNEQLKLTQRIKWKYMQGILRRSPDPHL 89
+ SIF PK L+ + +Y PH S GP+HC +L +R K + I R+
Sbjct: 41 VTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKI--RNQYNSF 98
Query: 90 KWRELVDAIASLKDPARQCYAGSIDLDDREFIEVLVLDGCFIIEL-----FRKDCDILPK 144
++ +LV+ + S++ R CY I + + ++ +D F+IE FRK ++ +
Sbjct: 99 RFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINR 158
Query: 145 EPDDPIFAMSCFLEYLNHDLILLENQIPWLVLERLFSLTMAPDSERKSLIMVTLEYFANI 204
+ I D++++ENQIP VL + + L++ L
Sbjct: 159 VGHNEIL----------RDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKD 208
Query: 205 FSSK--KPDETKPEQFEVRNVKHIIDLLRHSLVLP 237
S K D+ + + + + HI+D L + +++P
Sbjct: 209 LSPLVIKFDDDQILKAQFQECNHILDFL-YQMIVP 242
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 255 PSAMTLQESGIKLQRVNSASILDIKF--RNGVLEIPPLLIQETTETLFRNLISFEQCCPN 312
PS L ++G++ + +I + F +G +P + + TET+ RNL+++E +
Sbjct: 346 PSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTS 405
Query: 313 YEPIVTSYAKLMDSLIDTNKDVKLLFEYH-LIDNWLNIGDVTQFFKKLYYDARVKNFYYL 371
+ T Y +L++ +ID+ +DV+LL E L+ + + + + + R+ +L
Sbjct: 406 GPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFL 465
Query: 372 -PVCQEVN-LYCRRWRSRL 388
++VN Y RW+ ++
Sbjct: 466 DKTIEDVNRYYTGRWKVKI 484
>sp|A6UPN9|SPSS_METVS O-phospho-L-seryl-tRNA:Cys-tRNA synthase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=Mevan_0554 PE=3
SV=1
Length = 381
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 311 PNYEPIVTSYAKLMDSLIDTNKDVKLLFEYHLIDNWLNIGDVTQFFK 357
PN+ I SYA+ +D L D+ K++ L+ H+ ++ N+ DV++ K
Sbjct: 134 PNFRVIPKSYAEKIDELEDSGKNIGLILLTHVDGSYGNVSDVSKVGK 180
>sp|Q979Y4|SYN_THEVO Asparagine--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=asnS
PE=3 SV=1
Length = 429
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 131 IIELFRKDCDILPKEPDDPIFAMSCFLEYLNHDLILLENQIPWLVLERLFSLTMAPDSER 190
+IE D +L ++P+ F D+I + N+I ++ + + D ER
Sbjct: 249 VIEENYDDLKLLGRDPEALRAMKPPFPRVKYSDIIKVANEIG---MQLKYGDDLGADEER 305
Query: 191 KSLIMVTLEYFANIFSSKKPDETKPEQFEVRNVKHIIDLLRHSLVLPLEKGYKCSNRKRE 250
+ +T+ Y +F + P E KP + ++ + ++L H L+ P G +R
Sbjct: 306 Q----ITMRYCKPVFVTNYPKELKP-FYMPQDPDNPSEVLNHDLLAPEGYGEIIGGSQRI 360
Query: 251 WDICPSAMTLQESGI 265
WD ++E+G+
Sbjct: 361 WDYKELMQRIREAGL 375
>sp|A8YTD2|SYE_LACH4 Glutamate--tRNA ligase OS=Lactobacillus helveticus (strain DPC
4571) GN=gltX PE=3 SV=1
Length = 499
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 79 GILRRSPDPH-LKW-RELVDAIA-------SLKDPARQCYAGSIDLDDREFIEVLVLDGC 129
G++ P P ++W R+LV+ + + D A+ + + DL D E E+ DG
Sbjct: 356 GLVDEHPTPEKMEWIRQLVNIYSIQMSYTKQIVDMAKIFFEEAKDLSDEEIEEIKNDDGR 415
Query: 130 FIIELFRKDCDILPK 144
+IE F+K D++P+
Sbjct: 416 GVIEEFKKQLDLIPR 430
>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorhabditis elegans GN=dhc-1
PE=3 SV=1
Length = 4568
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 99 ASLKDPARQC-YAGSIDLDDREFIEVL---VLDGCFIIELFRKDCDILPK-EPDDPIFA- 152
+L+ QC Y G ID +F +VL VL+ F + F +D ++PK + DD +F
Sbjct: 4189 TTLRTLLSQCIYGGKID---NQFDQVLLDCVLENLFTAKSFEQDHVLIPKYDGDDSLFTP 4245
Query: 153 -MSCFLEYLNHDLILLENQIP-WLVL----ERLFSLTMAPDSERKSLIMVTLEYFANIFS 206
MS + + L Q+P WL L E++ LT +S ++++ VT E A F+
Sbjct: 4246 NMSKKDQMIGWVEELKNEQLPAWLGLPNNAEKVL-LTKRGESMLRNMLKVTDEELA--FN 4302
Query: 207 SKKPDETKPE 216
+E KP+
Sbjct: 4303 EDGKEEVKPQ 4312
>sp|Q5FM35|SYE_LACAC Glutamate--tRNA ligase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=gltX PE=3 SV=1
Length = 499
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 79 GILRRSPDPH-LKW-RELVDAIA-------SLKDPARQCYAGSIDLDDREFIEVLVLDGC 129
G++ P P ++W R+LV+ A + D A+ + + +L D E E+ DG
Sbjct: 356 GLVDEHPTPEKMEWIRQLVNIYAVQMSYTKQIVDMAKIFFEDAKELSDEEIEEIKNDDGR 415
Query: 130 FIIELFRKDCDILPK 144
+IE F+K D++P+
Sbjct: 416 AVIEEFKKQLDLIPR 430
>sp|O94679|CND1_SCHPO Condensin complex subunit 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cnd1 PE=1 SV=1
Length = 1158
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 155 CFLEYLNHD----------LILLENQIPWLVLERLFSLTMAPDSERKSLIMVTLEYFANI 204
C LE+ ++D L+ L + IP L L++L L DSE +L +E AN+
Sbjct: 275 CSLEFNDNDVKGPKQVALFLVRLSSLIPNLCLKQLTQLVKLLDSESYTLRCAIIEVLANV 334
Query: 205 FSSKKPDETKPEQFEV--RNVKHIIDLLRHSLV 235
+ DE + E E V+ ++DLL L+
Sbjct: 335 VIDQIHDEAQNEMSESVPATVQSLMDLLSERLL 367
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,584,860
Number of Sequences: 539616
Number of extensions: 6594246
Number of successful extensions: 17935
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 17922
Number of HSP's gapped (non-prelim): 16
length of query: 428
length of database: 191,569,459
effective HSP length: 120
effective length of query: 308
effective length of database: 126,815,539
effective search space: 39059186012
effective search space used: 39059186012
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)