Query 042633
Match_columns 428
No_of_seqs 128 out of 676
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 7E-109 2E-113 844.3 33.0 377 34-416 1-391 (391)
2 PRK10132 hypothetical protein; 59.4 9.2 0.0002 32.2 2.9 20 398-418 84-103 (108)
3 PF12911 OppC_N: N-terminal TM 59.1 12 0.00026 27.0 3.2 34 393-426 9-42 (56)
4 PRK10404 hypothetical protein; 57.8 10 0.00022 31.5 2.9 20 398-418 78-97 (101)
5 PF14770 TMEM18: Transmembrane 57.7 7.8 0.00017 33.5 2.2 48 374-424 55-102 (123)
6 PF07438 DUF1514: Protein of u 52.2 16 0.00035 27.6 2.8 21 401-421 2-22 (66)
7 PHA02103 hypothetical protein 51.1 35 0.00075 28.6 4.8 75 269-346 13-104 (135)
8 PF11293 DUF3094: Protein of u 50.3 44 0.00095 24.5 4.7 38 375-418 10-47 (55)
9 PF14579 HHH_6: Helix-hairpin- 49.0 1.1E+02 0.0024 24.4 7.6 81 264-349 1-85 (90)
10 PF09069 EF-hand_3: EF-hand; 48.9 27 0.00058 28.5 3.9 57 71-127 2-76 (90)
11 KOG3110 Riboflavin kinase [Coe 39.9 19 0.00041 31.5 1.8 61 50-110 66-138 (153)
12 COG4575 ElaB Uncharacterized c 36.0 36 0.00078 28.4 2.8 20 398-418 81-100 (104)
13 PF15103 G0-G1_switch_2: G0/G1 34.0 45 0.00097 27.7 3.0 24 403-426 28-51 (102)
14 PF04971 Lysis_S: Lysis protei 31.5 65 0.0014 24.8 3.3 32 388-419 20-51 (68)
15 PF10961 DUF2763: Protein of u 31.5 74 0.0016 25.9 3.9 29 398-426 13-44 (91)
16 PF05421 DUF751: Protein of un 29.6 79 0.0017 23.8 3.5 30 396-425 30-59 (61)
17 KOG4134 DNA-dependent RNA poly 26.7 55 0.0012 31.1 2.7 46 29-85 22-67 (253)
18 PF11446 DUF2897: Protein of u 22.8 1E+02 0.0022 22.7 2.9 21 399-419 4-24 (55)
19 PRK00448 polC DNA polymerase I 22.1 2.6E+02 0.0057 34.1 7.7 95 255-356 1339-1436(1437)
20 cd00925 Cyt_c_Oxidase_VIa Cyto 20.7 98 0.0021 25.0 2.7 26 398-423 13-38 (86)
21 PF05957 DUF883: Bacterial pro 20.0 1.1E+02 0.0024 24.6 3.0 20 398-418 71-90 (94)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=7.5e-109 Score=844.28 Aligned_cols=377 Identities=38% Similarity=0.666 Sum_probs=337.2
Q ss_pred eeccCchhhhCCCCCcccceeeeCCCCCCchhhhHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhHHHHhccccCCC
Q 042633 34 IFKTPKILLRHNESAYIPHAFSFGPFHCKNEQLKLTQRIKWKYMQGILRRSPDPHLKWRELVDAIASLKDPARQCYAGSI 113 (428)
Q Consensus 34 I~rVP~~lr~~n~~aY~P~~VsIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~~~~~~l~~~~~~i~~~e~~aR~cY~e~~ 113 (428)
|||||+++|++|+++|+|++|||||||||+++|+.||++||+|++.|++|++..+.++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999885458999999999999999999999999
Q ss_pred C-CChHHHHHHHHHhHHHHHHHHHhhccCCCCCCCCC-ccccchhhhHHHHHHHHhccCchHHHHHHHHhhccCC-Cccc
Q 042633 114 D-LDDREFIEVLVLDGCFIIELFRKDCDILPKEPDDP-IFAMSCFLEYLNHDLILLENQIPWLVLERLFSLTMAP-DSER 190 (428)
Q Consensus 114 ~-~~~~ef~~MmllDgcFiLe~l~~~~~~~~~~~~d~-~~~~~~~~~~i~~Dl~LLENQIPffVLe~L~~~~~~~-~~~~ 190 (428)
+ +++++|++||++|||||||+|+++.. ..+.+|| ++..+|....|++||+|||||||||||++||++.... ....
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~~ 158 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDVD 158 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCcc
Confidence 8 99999999999999999999998876 2345788 8888999999999999999999999999999999833 3446
Q ss_pred hhHHHHHHHhhccccCCCCCCCCCCcccccCcCCChHHHHHHhccCCcc--CCCCCCCC-----CCCcccCCCHHHHHHh
Q 042633 191 KSLIMVTLEYFANIFSSKKPDETKPEQFEVRNVKHIIDLLRHSLVLPLE--KGYKCSNR-----KREWDICPSAMTLQES 263 (428)
Q Consensus 191 ~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~--~~~~~~~~-----~~~~~~~~sAteL~~a 263 (428)
.++.+++.+||....+.. .+. ......+++|||||+|++++|+.. ...++.+. ...+..+||||||++|
T Consensus 159 ~~l~~l~~~~~~~~~~~~-~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~a 234 (391)
T PF03140_consen 159 ESLIDLVLKFFYKHWPSW-PPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREA 234 (391)
T ss_pred chHHHHHHhHhccccccc-ccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhC
Confidence 789999999994321111 111 122456789999999999999321 11111111 0245789999999999
Q ss_pred CcEEEecCCC-ceeceEEcCeEEEeccEEeccCcHHHHHHHHHHHhhCCCCCCcceeHHHHHHhhcCChHhHHHHHHCCc
Q 042633 264 GIKLQRVNSA-SILDIKFRNGVLEIPPLLIQETTETLFRNLISFEQCCPNYEPIVTSYAKLMDSLIDTNKDVKLLFEYHL 342 (428)
Q Consensus 264 GVkfk~~~~~-~llDI~F~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~Li~t~eDV~lL~~~gI 342 (428)
||+||++++. +++||+|++|+|+||+|.||++|+++||||||||||+...+.+||||+.||++||+|++||++|+++||
T Consensus 235 GV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgI 314 (391)
T PF03140_consen 235 GVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGI 314 (391)
T ss_pred CcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCe
Confidence 9999999875 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCchH-HHHHHHhccCcccC--CcccHHHHHHHHhhhccccchhhhhhcccccccchHHHHHHHHHHHHHHH
Q 042633 343 IDNWLNIGDV-TQFFKKLYYDARVK--NFYYLPVCQEVNLYCRRWRSRLRYAYTHRYCGSPWAIVSQVVGTILLILA 416 (428)
Q Consensus 343 i~n~lg~de~-a~lFn~L~~~v~~~--~~y~~~v~~~l~~~~~~~w~~~~a~l~~~yf~npw~~is~vaA~ill~lt 416 (428)
|+|++|+|++ ++|||+||+++.++ ++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++|
T Consensus 315 i~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 315 IVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred EecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 9999999999 99999999999988 78999999999999999999999999999999999999999999999997
No 2
>PRK10132 hypothetical protein; Provisional
Probab=59.45 E-value=9.2 Score=32.24 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=14.7
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 042633 398 GSPWAIVSQVVGTILLILAIL 418 (428)
Q Consensus 398 ~npw~~is~vaA~ill~lt~l 418 (428)
.|||..+++.| .+++++.++
T Consensus 84 ~~Pw~svgiaa-gvG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGTAA-AVGIFIGAL 103 (108)
T ss_pred hCcHHHHHHHH-HHHHHHHHH
Confidence 48999998644 577777665
No 3
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=59.09 E-value=12 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=28.1
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 042633 393 THRYCGSPWAIVSQVVGTILLILAILQTLFSSPP 426 (428)
Q Consensus 393 ~~~yf~npw~~is~vaA~ill~lt~lQt~~sv~~ 426 (428)
.+++++|+...+|++.-+++++++++..+++-+.
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~ 42 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPYD 42 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4777889999999999999999999888776543
No 4
>PRK10404 hypothetical protein; Provisional
Probab=57.79 E-value=10 Score=31.53 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 042633 398 GSPWAIVSQVVGTILLILAIL 418 (428)
Q Consensus 398 ~npw~~is~vaA~ill~lt~l 418 (428)
.|||..+++. |.++|++.++
T Consensus 78 e~Pw~avGia-agvGlllG~L 97 (101)
T PRK10404 78 EKPWQGIGVG-AAVGLVLGLL 97 (101)
T ss_pred hCcHHHHHHH-HHHHHHHHHH
Confidence 3899999864 4577777765
No 5
>PF14770 TMEM18: Transmembrane protein 18
Probab=57.71 E-value=7.8 Score=33.45 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=36.3
Q ss_pred HHHHHhhhccccchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhc
Q 042633 374 CQEVNLYCRRWRSRLRYAYTHRYCGSPWAIVSQVVGTILLILAILQTLFSS 424 (428)
Q Consensus 374 ~~~l~~~~~~~w~~~~a~l~~~yf~npw~~is~vaA~ill~lt~lQt~~sv 424 (428)
.+.+|++..+.|+ ..-+++||.+-=.+||++.++=+|+.+++..+..+
T Consensus 55 aE~iN~~~a~nW~---~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 55 AEYINEYAARNWR---SFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHHHHH---HHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 4889999987774 44467999999999999988776666666655443
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=52.21 E-value=16 Score=27.65 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 042633 401 WAIVSQVVGTILLILAILQTL 421 (428)
Q Consensus 401 w~~is~vaA~ill~lt~lQt~ 421 (428)
|.++|.+.|+++|++-..|+-
T Consensus 2 WIiiSIvLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSE 22 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHH
Confidence 999999999999999888864
No 7
>PHA02103 hypothetical protein
Probab=51.06 E-value=35 Score=28.58 Aligned_cols=75 Identities=17% Similarity=0.333 Sum_probs=49.2
Q ss_pred ecCCCceec--eEEc----CeE--EEeccEEeccCcHHHHHHHHHHHhhCCCC-----C----CcceeHHHHHHhhcCCh
Q 042633 269 RVNSASILD--IKFR----NGV--LEIPPLLIQETTETLFRNLISFEQCCPNY-----E----PIVTSYAKLMDSLIDTN 331 (428)
Q Consensus 269 ~~~~~~llD--I~F~----~G~--L~IP~L~id~~T~~llrNLiA~Eq~~~~~-----~----~~vtsYv~fM~~Li~t~ 331 (428)
+.+.++.+- |.|+ +.+ -+||.+..|....-+-|=.+-+|.|.... + .++-+|-.. .-..+
T Consensus 13 ~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry---f~ee~ 89 (135)
T PHA02103 13 PKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY---FGEEA 89 (135)
T ss_pred CccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH---hcccc
Confidence 334455444 4444 344 68999999999999999999999998542 1 235555443 33456
Q ss_pred HhHHHHHHCCccccc
Q 042633 332 KDVKLLFEYHLIDNW 346 (428)
Q Consensus 332 eDV~lL~~~gIi~n~ 346 (428)
|-|++-.+-||=.-|
T Consensus 90 e~ie~we~ygve~l~ 104 (135)
T PHA02103 90 EGVELWEEYGVEGLC 104 (135)
T ss_pred hhhhHHHHhCcceee
Confidence 677777777765443
No 8
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=50.32 E-value=44 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=28.5
Q ss_pred HHHHhhhccccchhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 042633 375 QEVNLYCRRWRSRLRYAYTHRYCGSPWAIVSQVVGTILLILAIL 418 (428)
Q Consensus 375 ~~l~~~~~~~w~~~~a~l~~~yf~npw~~is~vaA~ill~lt~l 418 (428)
++|++|-++.||.- -|+-|+ ||..+.++.|+++ .++++
T Consensus 10 ~~Vd~yL~a~~~~V----ER~PFr-P~~Ll~~li~Vv~-gl~ll 47 (55)
T PF11293_consen 10 QRVDEYLQAGVNQV----ERKPFR-PWRLLIVLIVVVI-GLGLL 47 (55)
T ss_pred HHHHHHHhCCCCcc----ccCCcc-hHHHHHHHHHHHH-HHHHH
Confidence 68999999999843 567777 9999988887665 44444
No 9
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=48.96 E-value=1.1e+02 Score=24.44 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=56.5
Q ss_pred CcEEEecC-CCceeceEEcC--eEEEeccEEeccCcHHHHHHHHHHHhhCCCCCCcceeHHHHHHhh-cCChHhHHHHHH
Q 042633 264 GIKLQRVN-SASILDIKFRN--GVLEIPPLLIQETTETLFRNLISFEQCCPNYEPIVTSYAKLMDSL-IDTNKDVKLLFE 339 (428)
Q Consensus 264 GVkfk~~~-~~~llDI~F~~--G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~L-i~t~eDV~lL~~ 339 (428)
||++.+.. ..|-.+-+..+ |.+.+|--.|..-.+.....+++-=+ +..++|+.-|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-----~g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-----NGPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-----CSS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-----cCCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 77887753 23334555555 79999999999999999888887544 24588999999999 888999999999
Q ss_pred CCcccccCCC
Q 042633 340 YHLIDNWLNI 349 (428)
Q Consensus 340 ~gIi~n~lg~ 349 (428)
.|.++..-.+
T Consensus 76 aGafd~~~~~ 85 (90)
T PF14579_consen 76 AGAFDSFGKS 85 (90)
T ss_dssp TTTTTTCSSC
T ss_pred CCCccccChh
Confidence 9999876443
No 10
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=48.93 E-value=27 Score=28.46 Aligned_cols=57 Identities=18% Similarity=0.423 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCC--CccCHHHHHHHHH-------------HhHHHHhccccC---CCCCChHHHHHHHHHh
Q 042633 71 RIKWKYMQGILRRSPD--PHLKWRELVDAIA-------------SLKDPARQCYAG---SIDLDDREFIEVLVLD 127 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~~--~~~~l~~~~~~i~-------------~~e~~aR~cY~e---~~~~~~~ef~~MmllD 127 (428)
+.|.||+-+++..+++ ....++.++..+. ..|..+|+|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 3589999999977553 1234555544432 267888999965 4578889998887654
No 11
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=39.89 E-value=19 Score=31.49 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=38.5
Q ss_pred ccceeeeC--CCCCCch---hhhHHHHHHHHHHHHHHhcC--C--CCc---cCHHHHHHHHHHhHHHHhcccc
Q 042633 50 IPHAFSFG--PFHCKNE---QLKLTQRIKWKYMQGILRRS--P--DPH---LKWRELVDAIASLKDPARQCYA 110 (428)
Q Consensus 50 ~P~~VsIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r~--~--~~~---~~l~~~~~~i~~~e~~aR~cY~ 110 (428)
-|+++||| ||..++. ++..++..|--+-...++-. | .+. .++++++++|..-.+.|+..-+
T Consensus 66 ~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 66 FKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred eeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 48999999 8988764 33344444444433333210 0 011 4789999999988888887554
No 12
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=36.05 E-value=36 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=13.6
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 042633 398 GSPWAIVSQVVGTILLILAIL 418 (428)
Q Consensus 398 ~npw~~is~vaA~ill~lt~l 418 (428)
.|||..|++-|| ++|++.++
T Consensus 81 e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred cCCchHHHHHHH-HHHHHHHH
Confidence 479999986554 55555543
No 13
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=34.04 E-value=45 Score=27.68 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC
Q 042633 403 IVSQVVGTILLILAILQTLFSSPP 426 (428)
Q Consensus 403 ~is~vaA~ill~lt~lQt~~sv~~ 426 (428)
.++-+.|+++.++.+++|+|+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 467778899999999999998664
No 14
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=31.54 E-value=65 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=23.6
Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 042633 388 LRYAYTHRYCGSPWAIVSQVVGTILLILAILQ 419 (428)
Q Consensus 388 ~~a~l~~~yf~npw~~is~vaA~ill~lt~lQ 419 (428)
|...+.-.+-+.-|.+|+++.+++.-++|.+-
T Consensus 20 wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 20 WLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 44444455667789999999998887887663
No 15
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=31.49 E-value=74 Score=25.92 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=21.3
Q ss_pred ccch---HHHHHHHHHHHHHHHHHHHhhhcCC
Q 042633 398 GSPW---AIVSQVVGTILLILAILQTLFSSPP 426 (428)
Q Consensus 398 ~npw---~~is~vaA~ill~lt~lQt~~sv~~ 426 (428)
++|| .++-++-+++-+|..++||+++.-.
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~~ 44 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSPDS 44 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4577 3666777788788888999988543
No 16
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=29.59 E-value=79 Score=23.82 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=25.3
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhcC
Q 042633 396 YCGSPWAIVSQVVGTILLILAILQTLFSSP 425 (428)
Q Consensus 396 yf~npw~~is~vaA~ill~lt~lQt~~sv~ 425 (428)
-++||-+.++++++++..+..+.+|+-++.
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999988887664
No 17
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=26.71 E-value=55 Score=31.13 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CCCCeeeccCchhhhCCCCCcccceeeeCCCCCCchhhhHHHHHHHHHHHHHHhcCC
Q 042633 29 ALNASIFKTPKILLRHNESAYIPHAFSFGPFHCKNEQLKLTQRIKWKYMQGILRRSP 85 (428)
Q Consensus 29 ~~~~~I~rVP~~lr~~n~~aY~P~~VsIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~ 85 (428)
+.+-|++++|-.+ .+|+||||-.++.-..||+|=..-+.....+.+
T Consensus 22 sp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~~vl~y~~~l~ 67 (253)
T KOG4134|consen 22 SPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDTKVLFYDSGLD 67 (253)
T ss_pred CCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhHHHhhhccCCC
Confidence 4466899999775 799999999887555788887666666555544
No 18
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=22.80 E-value=1e+02 Score=22.74 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=16.7
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 042633 399 SPWAIVSQVVGTILLILAILQ 419 (428)
Q Consensus 399 npw~~is~vaA~ill~lt~lQ 419 (428)
+||.+|.++.|+|+--++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 699999999998877666664
No 19
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=22.06 E-value=2.6e+02 Score=34.08 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=70.2
Q ss_pred CCHHHHHHhCcEEEecC---CCceeceEEcCeEEEeccEEeccCcHHHHHHHHHHHhhCCCCCCcceeHHHHHHhhcCCh
Q 042633 255 PSAMTLQESGIKLQRVN---SASILDIKFRNGVLEIPPLLIQETTETLFRNLISFEQCCPNYEPIVTSYAKLMDSLIDTN 331 (428)
Q Consensus 255 ~sAteL~~aGVkfk~~~---~~~llDI~F~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vtsYv~fM~~Li~t~ 331 (428)
.=|.|..+.||+|.+.. +.. -.-...+|.+.+|--.|+.-.+...+++++==+ +..++|.--|...---+.
T Consensus 1339 ~~~~E~~~rGi~~lp~din~S~~-~~f~i~~~~i~~pl~~I~glG~~~a~~Iv~~R~-----~g~F~s~~Df~~R~~v~k 1412 (1437)
T PRK00448 1339 EIALEMLERGFKFQKVDLYKSDA-TEFIIEGDSLIPPFNALPGLGENVAKSIVEARE-----EGEFLSKEDLRKRTKVSK 1412 (1437)
T ss_pred HHHHHHHHCCCeEeCCcccccCC-cceEeeCCEEEecchhcCCCCHHHHHHHHHHHh-----cCCCCCHHHHHHHhCCCH
Confidence 34678899999999842 211 011225788999999999999999999976321 246899999999987789
Q ss_pred HhHHHHHHCCcccccCCCchHHHHH
Q 042633 332 KDVKLLFEYHLIDNWLNIGDVTQFF 356 (428)
Q Consensus 332 eDV~lL~~~gIi~n~lg~de~a~lF 356 (428)
.-++.|.+.|++... +..+-..||
T Consensus 1413 ~~ie~L~~~Ga~d~l-~~~~Q~slF 1436 (1437)
T PRK00448 1413 TLIEKLDELGVLDDL-PETNQLSLF 1436 (1437)
T ss_pred HHHHHHHHCCCCcCC-Cccchhhcc
Confidence 999999999999886 322225555
No 20
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.74 E-value=98 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhh
Q 042633 398 GSPWAIVSQVVGTILLILAILQTLFS 423 (428)
Q Consensus 398 ~npw~~is~vaA~ill~lt~lQt~~s 423 (428)
.+-|+-||+++|+-+++++.+.|+..
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 34688899999999999999998764
No 21
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.01 E-value=1.1e+02 Score=24.61 Aligned_cols=20 Identities=30% Similarity=0.723 Sum_probs=13.8
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 042633 398 GSPWAIVSQVVGTILLILAIL 418 (428)
Q Consensus 398 ~npw~~is~vaA~ill~lt~l 418 (428)
.|||..+++.++ +++++..+
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 579999976665 55565544
Done!