Query 042633
Match_columns 428
No_of_seqs 128 out of 676
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 14:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 22.3 23 0.0008 22.9 0.5 20 288-308 1-20 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 19.1 19 0.00066 23.5 -0.4 19 288-307 3-21 (40)
3 2kru_A Light-independent proto 14.6 49 0.0017 24.1 0.7 13 169-181 15-27 (63)
4 1v54_G Cytochrome C oxidase po 13.7 1.2E+02 0.0041 23.3 2.8 24 399-422 14-37 (85)
5 3ism_C CG4930; endonuclease, e 13.5 86 0.0029 30.1 2.3 63 331-393 219-300 (359)
6 2j6b_A AFV3-109; sulfolobus, c 11.7 1.5E+02 0.005 23.9 2.8 32 330-361 26-57 (109)
7 2y69_G Cytochrome C oxidase po 11.0 1.6E+02 0.0055 23.2 2.8 24 399-422 26-49 (97)
8 2x4i_A CAG38848, uncharacteriz 10.6 1.8E+02 0.0063 23.5 3.1 31 331-361 29-59 (114)
9 2lnk_A Protein S100-A4; EF-han 10.2 6E+02 0.02 19.8 6.2 39 89-127 41-94 (113)
10 2lv7_A Calcium-binding protein 10.1 3.9E+02 0.013 20.1 4.9 44 81-124 45-98 (100)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=22.35 E-value=23 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.605 Sum_probs=15.9
Q ss_pred ccEEeccCcHHHHHHHHHHHh
Q 042633 288 PPLLIQETTETLFRNLISFEQ 308 (428)
Q Consensus 288 P~L~id~~T~~llrNLiA~Eq 308 (428)
||+.+| -|..+||||+-...
T Consensus 1 PPiSlD-LTFhlLR~m~emar 20 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAK 20 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHH
Confidence 677776 59999999987653
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=19.12 E-value=19 Score=23.53 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.3
Q ss_pred ccEEeccCcHHHHHHHHHHH
Q 042633 288 PPLLIQETTETLFRNLISFE 307 (428)
Q Consensus 288 P~L~id~~T~~llrNLiA~E 307 (428)
||+.|| -|..+||||+-..
T Consensus 3 PpiSiD-LTFHlLR~miema 21 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELA 21 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHH
Confidence 777776 5999999998764
No 3
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=14.63 E-value=49 Score=24.07 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=9.8
Q ss_pred cCchHHHHHHHHh
Q 042633 169 NQIPWLVLERLFS 181 (428)
Q Consensus 169 NQIPffVLe~L~~ 181 (428)
++|||||=.++=.
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999776644
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=13.69 E-value=1.2e+02 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 042633 399 SPWAIVSQVVGTILLILAILQTLF 422 (428)
Q Consensus 399 npw~~is~vaA~ill~lt~lQt~~ 422 (428)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999898999888864
No 5
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=13.53 E-value=86 Score=30.07 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=43.9
Q ss_pred hHhHHHHHHCCcccccCCCchH-HHHHHHhccCc-------ccC-Ccc---cHHHHHHHHhhhcc-----c--cchhhhh
Q 042633 331 NKDVKLLFEYHLIDNWLNIGDV-TQFFKKLYYDA-------RVK-NFY---YLPVCQEVNLYCRR-----W--RSRLRYA 391 (428)
Q Consensus 331 ~eDV~lL~~~gIi~n~lg~de~-a~lFn~L~~~v-------~~~-~~y---~~~v~~~l~~~~~~-----~--w~~~~a~ 391 (428)
.+|-+.|-++||+.+-.-.|+- -.-|+++|+.+ .++ +.- |.++.+-|+.|... + .|-|+..
T Consensus 219 leDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWIvk 298 (359)
T 3ism_C 219 LEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWIFN 298 (359)
T ss_dssp CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHHHH
Confidence 4788888899999999888988 88888888753 233 222 88899999998653 3 3677766
Q ss_pred hc
Q 042633 392 YT 393 (428)
Q Consensus 392 l~ 393 (428)
||
T Consensus 299 lr 300 (359)
T 3ism_C 299 LR 300 (359)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 6
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=11.69 E-value=1.5e+02 Score=23.93 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=27.0
Q ss_pred ChHhHHHHHHCCcccccCCCchHHHHHHHhcc
Q 042633 330 TNKDVKLLFEYHLIDNWLNIGDVTQFFKKLYY 361 (428)
Q Consensus 330 t~eDV~lL~~~gIi~n~lg~de~a~lFn~L~~ 361 (428)
+.++++.+..++-+++..|.+..|++.++||.
T Consensus 26 s~~Ea~~~l~~~~~vSaIGH~sTA~lls~Llg 57 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIGHQATAELLSSILG 57 (109)
T ss_dssp CHHHHHHHHHHSCEEECBCSHHHHHHHHHHHT
T ss_pred CHHHHHHHhcccceEEeeccHHHHHHHHHHhC
Confidence 56788888777788888998888999999986
No 7
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.95 E-value=1.6e+02 Score=23.17 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 042633 399 SPWAIVSQVVGTILLILAILQTLF 422 (428)
Q Consensus 399 npw~~is~vaA~ill~lt~lQt~~ 422 (428)
+-|+-|++++|+=+++++.++++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999888998888764
No 8
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=10.61 E-value=1.8e+02 Score=23.53 Aligned_cols=31 Identities=13% Similarity=-0.009 Sum_probs=26.3
Q ss_pred hHhHHHHHHCCcccccCCCchHHHHHHHhcc
Q 042633 331 NKDVKLLFEYHLIDNWLNIGDVTQFFKKLYY 361 (428)
Q Consensus 331 ~eDV~lL~~~gIi~n~lg~de~a~lFn~L~~ 361 (428)
.++++.+..++=+++..|.+..|++.+.||.
T Consensus 29 ~~EAk~~v~~~~~iSaIGH~sTA~lls~Llg 59 (114)
T 2x4i_A 29 RLEFCENIDNEDIINSIGHDSTIQLINSLCG 59 (114)
T ss_dssp HHHHHHHHCCTTEEECCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCeEEeeccHHHHHHHHHHhC
Confidence 5778888877778889999888999999985
No 9
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=10.19 E-value=6e+02 Score=19.83 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHH----------hHHHHhcccc---C--CCCCChHHHHHHHHHh
Q 042633 89 LKWRELVDAIAS----------LKDPARQCYA---G--SIDLDDREFIEVLVLD 127 (428)
Q Consensus 89 ~~l~~~~~~i~~----------~e~~aR~cY~---e--~~~~~~~ef~~MmllD 127 (428)
.+.+++...++. -++++..... . +-.++=+||+.||.--
T Consensus 41 Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~ 94 (113)
T 2lnk_A 41 LNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCI 94 (113)
T ss_dssp BCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 678888887764 1234444432 1 1237888999988643
No 10
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=10.14 E-value=3.9e+02 Score=20.13 Aligned_cols=44 Identities=23% Similarity=0.230 Sum_probs=23.5
Q ss_pred HhcCCCCccCHHHHHHHHHHh-----HHHHhccc---cC--CCCCChHHHHHHH
Q 042633 81 LRRSPDPHLKWRELVDAIASL-----KDPARQCY---AG--SIDLDDREFIEVL 124 (428)
Q Consensus 81 l~r~~~~~~~l~~~~~~i~~~-----e~~aR~cY---~e--~~~~~~~ef~~Mm 124 (428)
+...++...+.+++..+++.+ +++++... +. +-.++=+||+.||
T Consensus 45 ~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~~m 98 (100)
T 2lv7_A 45 FDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLL 98 (100)
T ss_dssp TCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHHHT
T ss_pred HcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHHHh
Confidence 344443346788887777653 22232222 21 1237778888876
Done!