Query 042633
Match_columns 428
No_of_seqs 128 out of 676
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 14:01:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 36.9 15 0.0011 27.2 3.8 55 71-125 3-77 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 20.0 32 0.0023 24.7 2.8 23 400-422 15-37 (84)
3 d2i4ra1 c.149.1.1 (A:4-79) V-t 18.3 30 0.0022 24.1 2.3 49 9-57 25-76 (76)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 11.3 76 0.0055 29.4 3.8 34 392-425 401-438 (472)
5 d1v8ca2 d.129.5.1 (A:88-165) M 10.1 43 0.0031 22.6 1.0 18 283-300 49-69 (78)
6 d1nrjb_ c.37.1.8 (B:) Signal r 8.7 65 0.0047 25.4 1.9 19 48-66 1-19 (209)
7 d2outa1 a.140.3.2 (A:94-131) U 8.1 50 0.0036 19.1 0.5 15 258-272 6-20 (38)
8 d1oksa_ a.8.5.1 (A:) RNA polym 6.3 2.4E+02 0.017 17.8 3.3 31 70-102 17-47 (54)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 5.6 2.7E+02 0.02 15.5 3.1 10 400-409 4-13 (33)
10 d1nl1a1 g.14.1.1 (A:66-147) Pr 5.3 76 0.0055 22.0 0.4 11 390-400 43-53 (82)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.85 E-value=15 Score=27.20 Aligned_cols=55 Identities=13% Similarity=0.328 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCC--CccCHHHHHHHHH---------------HhHHHHhcccc---CCCCCChHHHHHHHH
Q 042633 71 RIKWKYMQGILRRSPD--PHLKWRELVDAIA---------------SLKDPARQCYA---GSIDLDDREFIEVLV 125 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~~--~~~~l~~~~~~i~---------------~~e~~aR~cY~---e~~~~~~~ef~~Mml 125 (428)
+.|.||+-+.+..+++ ....++.++..+- .+|..+|+|+. ..-+.+.++|+.-|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 3589999999987653 1234555544431 24778888884 233577777766554
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.03 E-value=32 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 042633 400 PWAIVSQVVGTILLILAILQTLF 422 (428)
Q Consensus 400 pw~~is~vaA~ill~lt~lQt~~ 422 (428)
-|+-|++++|+-+++++.+.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999998864
No 3
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=18.33 E-value=30 Score=24.11 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHhhhcccc---cCCCCCeeeccCchhhhCCCCCcccceeeeC
Q 042633 9 VDVKLLGSSFEDMMAEPL---AMALNASIFKTPKILLRHNESAYIPHAFSFG 57 (428)
Q Consensus 9 ~~~~~~~~~i~~~~~~~~---~~~~~~~I~rVP~~lr~~n~~aY~P~~VsIG 57 (428)
..-+++.+.++.-++... -.-++-..-++|+.+++.-.+.-.|.++.||
T Consensus 25 ~~~ee~~~~i~~~~~~~digII~Ite~~a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 25 TSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp CSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCeEEEEEeHHHHHHhhHHHHHHHhcCCCCEEEecC
Confidence 444667777764333310 0001112346799998888888999999998
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=11.31 E-value=76 Score=29.39 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=22.9
Q ss_pred hcccccccchHHHHHHHHHHHHHHHH----HHHhhhcC
Q 042633 392 YTHRYCGSPWAIVSQVVGTILLILAI----LQTLFSSP 425 (428)
Q Consensus 392 l~~~yf~npw~~is~vaA~ill~lt~----lQt~~sv~ 425 (428)
+++..|+|+|..++++.++++.++.+ +|.++...
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~~ 438 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLK 438 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTCC
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHccc
Confidence 45677899999998887766544432 55555543
No 5
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=10.07 E-value=43 Score=22.64 Aligned_cols=18 Identities=44% Similarity=0.770 Sum_probs=12.9
Q ss_pred eEEEeccEEec---cCcHHHH
Q 042633 283 GVLEIPPLLIQ---ETTETLF 300 (428)
Q Consensus 283 G~L~IP~L~id---~~T~~ll 300 (428)
|.|.||+|.+. +..+.|+
T Consensus 49 gsl~ip~lrvevege~ae~w~ 69 (78)
T d1v8ca2 49 GSLSIPQLRVEVEGEEAERWF 69 (78)
T ss_dssp TTEEEEEEEEEEEETTHHHHH
T ss_pred cceecceEEEEeccHHHHHHH
Confidence 88999999775 3445554
No 6
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.75 E-value=65 Score=25.35 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=17.4
Q ss_pred CcccceeeeCCCCCCchhh
Q 042633 48 AYIPHAFSFGPFHCKNEQL 66 (428)
Q Consensus 48 aY~P~~VsIGPyHhg~~~L 66 (428)
.|+|.++=+||-..|+..|
T Consensus 1 ~~~p~V~lvG~~n~GKTSL 19 (209)
T d1nrjb_ 1 SYQPSIIIAGPQNSGKTSL 19 (209)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5999999999999999866
No 7
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=8.11 E-value=50 Score=19.11 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=11.8
Q ss_pred HHHHHhCcEEEecCC
Q 042633 258 MTLQESGIKLQRVNS 272 (428)
Q Consensus 258 teL~~aGVkfk~~~~ 272 (428)
.+|-+.||.||.+.+
T Consensus 6 aqltergitfkqsat 20 (38)
T d2outa1 6 AQLTERGITFKQSAT 20 (38)
T ss_dssp HHHHHHTCCCSSSCC
T ss_pred HHHHHcCceeeccch
Confidence 478899999997643
No 8
>d1oksa_ a.8.5.1 (A:) RNA polymerase alpha subunit {Measles virus [TaxId: 11234]}
Probab=6.34 E-value=2.4e+02 Score=17.75 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCCCCccCHHHHHHHHHHhH
Q 042633 70 QRIKWKYMQGILRRSPDPHLKWRELVDAIASLK 102 (428)
Q Consensus 70 E~~K~~~~~~~l~r~~~~~~~l~~~~~~i~~~e 102 (428)
|.+| +|+..+++.-.+ +.++.+|++.+.+..
T Consensus 17 ~~hK-~~ml~LLndikg-~~dL~eF~QMl~~Ii 47 (54)
T d1oksa_ 17 EDRK-RYLMTLLDDIKG-ANDLAKFHQMLVKII 47 (54)
T ss_dssp HHHH-HHHHHHHHHCCS-HHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHccc-cchHHHHHHHHHHHH
Confidence 5566 788888887542 267888888776543
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=5.63 E-value=2.7e+02 Score=15.47 Aligned_cols=10 Identities=10% Similarity=0.229 Sum_probs=4.7
Q ss_pred chHHHHHHHH
Q 042633 400 PWAIVSQVVG 409 (428)
Q Consensus 400 pw~~is~vaA 409 (428)
|--++++++-
T Consensus 4 p~gal~vi~i 13 (33)
T d1xmec1 4 PKGALAVILV 13 (33)
T ss_dssp CHHHHHHHHH
T ss_pred ccchHHHHHH
Confidence 4444554443
No 10
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.26 E-value=76 Score=22.00 Aligned_cols=11 Identities=18% Similarity=0.670 Sum_probs=8.5
Q ss_pred hhhcccccccc
Q 042633 390 YAYTHRYCGSP 400 (428)
Q Consensus 390 a~l~~~yf~np 400 (428)
+.|.|+|++||
T Consensus 43 ~~l~~NyCRNP 53 (82)
T d1nl1a1 43 ADLRENFCRNP 53 (82)
T ss_dssp SCCCTTCCBCT
T ss_pred cCcccccccCC
Confidence 45678899987
Done!