Query 042635
Match_columns 121
No_of_seqs 122 out of 692
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 4.8E-43 1.6E-47 255.9 12.2 112 1-113 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 6.8E-41 2.3E-45 242.2 6.1 110 4-113 3-160 (160)
3 2ast_A S-phase kinase-associat 100.0 5.1E-37 1.7E-41 221.2 11.9 106 6-111 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 7.2E-34 2.5E-38 201.6 8.0 94 6-99 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.8 2.9E-19 9.8E-24 119.8 4.3 57 1-58 1-68 (99)
6 1vcb_B Protein (elongin C); tu 99.7 2.3E-18 8E-23 117.9 7.3 71 3-73 15-106 (112)
7 2fnj_C Transcription elongatio 99.7 3.6E-18 1.2E-22 113.8 5.4 69 5-73 1-90 (96)
8 4ajy_C Transcription elongatio 99.7 1.4E-16 4.7E-21 105.9 6.8 68 6-73 3-91 (97)
9 2yy9_A Zinc finger and BTB dom 96.5 0.0036 1.2E-07 42.4 4.7 79 6-85 27-125 (135)
10 2vkp_A BTB/POZ domain-containi 95.7 0.058 2E-06 34.4 7.5 71 6-77 10-107 (109)
11 3htm_A Speckle-type POZ protei 95.7 0.045 1.5E-06 37.6 7.2 83 6-89 36-142 (172)
12 1buo_A POZ domain, protein (pr 95.5 0.069 2.3E-06 35.0 7.4 71 6-78 30-120 (121)
13 4eoz_A Speckle-type POZ protei 94.6 0.043 1.5E-06 36.6 4.4 76 6-83 27-127 (145)
14 3i3n_A Kelch-like protein 11; 94.5 0.23 7.8E-06 37.0 8.6 83 6-88 34-148 (279)
15 3m5b_A Zinc finger and BTB dom 94.0 0.11 3.7E-06 34.4 5.3 48 6-54 32-83 (119)
16 3hve_A Gigaxonin; ubiquitin, c 93.5 0.43 1.5E-05 35.0 8.2 50 6-56 33-97 (256)
17 3fkc_A Transcriptional regulat 93.4 0.23 7.8E-06 32.4 6.1 67 6-73 33-107 (116)
18 2if5_A Zinc finger and BTB dom 93.4 0.3 1E-05 31.6 6.6 49 6-55 27-88 (120)
19 2q81_A MIZ-1 protein; BTB/POZ 92.7 0.28 9.5E-06 32.0 5.7 50 6-56 29-86 (119)
20 3b84_A Zinc finger and BTB dom 92.7 0.21 7.2E-06 32.6 5.0 50 6-56 26-84 (119)
21 2vpk_A Myoneurin; transcriptio 92.7 0.83 2.8E-05 29.3 7.9 50 6-56 24-84 (116)
22 1r29_A B-cell lymphoma 6 prote 92.2 0.96 3.3E-05 29.5 7.8 50 6-56 31-93 (127)
23 3hqi_A Speckle-type POZ protei 90.9 0.64 2.2E-05 35.0 6.6 82 6-88 176-281 (312)
24 3ga1_A Nucleus accumbens-assoc 90.0 0.81 2.8E-05 30.0 5.8 66 6-73 35-110 (129)
25 2ppi_A Gigaxonin; BTB domain, 89.2 0.76 2.6E-05 31.0 5.3 65 6-72 49-128 (144)
26 2z8h_A Transcription regulator 88.9 0.61 2.1E-05 31.1 4.6 50 6-56 38-99 (138)
27 3ohu_A Transcription regulator 88.3 1.5 5E-05 28.5 6.0 66 6-73 34-111 (125)
28 1wgx_A KIAA1903 protein; MYB D 74.1 2.1 7.2E-05 26.5 2.4 20 73-92 35-54 (73)
29 2k9n_A MYB24; R2R3 domain, DNA 71.8 4.9 0.00017 25.8 3.9 34 73-106 25-66 (107)
30 2ihc_A Transcription regulator 70.9 7.5 0.00026 25.0 4.7 66 6-73 31-108 (124)
31 2cqq_A RSGI RUH-037, DNAJ homo 70.1 3.2 0.00011 25.4 2.5 19 73-92 35-53 (72)
32 4eef_G F-HB80.4, designed hema 68.5 1.2 4.2E-05 27.7 0.3 22 74-95 48-69 (74)
33 1x41_A Transcriptional adaptor 67.7 4.1 0.00014 23.5 2.6 20 73-92 32-51 (60)
34 1gv2_A C-MYB, MYB proto-oncoge 66.7 4.4 0.00015 25.8 2.8 34 73-106 28-69 (105)
35 1ug2_A 2610100B20RIK gene prod 65.9 4.4 0.00015 26.3 2.6 20 73-92 59-78 (95)
36 2yus_A SWI/SNF-related matrix- 64.5 5.2 0.00018 24.7 2.7 20 73-92 41-60 (79)
37 1h8a_C AMV V-MYB, MYB transfor 62.5 8.7 0.0003 25.3 3.8 34 73-106 51-92 (128)
38 2cjj_A Radialis; plant develop 61.8 4.9 0.00017 25.8 2.3 20 73-92 35-54 (93)
39 2cqr_A RSGI RUH-043, DNAJ homo 59.7 3 0.0001 25.6 0.9 20 73-92 45-64 (73)
40 2elk_A SPCC24B10.08C protein; 59.3 7.3 0.00025 22.3 2.6 19 73-91 33-52 (58)
41 2yum_A ZZZ3 protein, zinc fing 59.2 6.9 0.00024 23.4 2.6 20 72-91 36-55 (75)
42 2eqr_A N-COR1, N-COR, nuclear 55.0 7.7 0.00026 22.5 2.2 20 73-92 35-54 (61)
43 3osg_A MYB21; transcription-DN 54.7 16 0.00053 24.1 4.0 34 73-106 34-75 (126)
44 3lvl_A NIFU-like protein; prot 54.4 9.4 0.00032 25.6 2.8 27 66-92 65-91 (129)
45 3few_X Colicin S4; cell lysis, 54.3 9.6 0.00033 31.1 3.2 41 71-111 164-206 (505)
46 2qq4_A Iron-sulfur cluster bio 53.7 10 0.00035 25.7 2.9 27 66-92 65-91 (138)
47 3zqc_A MYB3; transcription-DNA 53.0 7 0.00024 26.0 2.0 33 74-106 27-67 (131)
48 3mn2_A Probable ARAC family tr 51.6 18 0.0006 22.5 3.7 19 42-60 2-20 (108)
49 1xjs_A NIFU-like protein; SR17 50.8 12 0.00041 25.7 2.9 27 66-92 67-93 (147)
50 2cu7_A KIAA1915 protein; nucle 50.4 12 0.0004 22.3 2.6 20 73-92 32-51 (72)
51 3lsg_A Two-component response 49.9 20 0.00067 22.0 3.7 19 41-59 1-19 (103)
52 2lr8_A CAsp8-associated protei 55.2 3.5 0.00012 25.3 0.0 21 71-92 38-58 (70)
53 1su0_B NIFU like protein ISCU; 48.0 16 0.00054 25.4 3.2 27 66-92 66-92 (159)
54 1guu_A C-MYB, MYB proto-oncoge 48.0 9.6 0.00033 21.0 1.7 20 73-92 27-46 (52)
55 1h89_C C-MYB, MYB proto-oncoge 47.5 17 0.00057 24.8 3.3 34 73-106 82-123 (159)
56 2kw0_A CCMH protein; oxidoredu 47.0 14 0.00048 23.6 2.6 18 74-91 48-66 (90)
57 2hl7_A Cytochrome C-type bioge 46.0 15 0.00052 23.1 2.6 18 74-91 51-69 (84)
58 3izc_v 60S acidic ribosomal pr 45.7 52 0.0018 21.4 5.3 46 44-89 1-55 (106)
59 2z7e_A ISCU protein, NIFU-like 45.5 11 0.00037 26.4 2.0 27 66-92 64-90 (157)
60 2d9a_A B-MYB, MYB-related prot 45.1 14 0.00046 21.0 2.2 20 73-92 32-51 (60)
61 3mkl_A HTH-type transcriptiona 44.6 17 0.00059 23.1 2.8 22 38-59 3-24 (120)
62 2jsp_A Transcriptional regulat 43.4 10 0.00035 24.2 1.5 18 81-98 43-60 (87)
63 3oou_A LIN2118 protein; protei 42.6 26 0.00089 21.7 3.4 20 41-60 4-23 (108)
64 1jr5_A 10 kDa anti-sigma facto 42.2 15 0.0005 23.6 2.1 30 83-115 50-80 (90)
65 1gvd_A MYB proto-oncogene prot 42.1 10 0.00035 20.9 1.2 20 73-92 27-46 (52)
66 1qzm_A ATP-dependent protease 42.0 22 0.00074 22.7 2.9 53 38-94 32-92 (94)
67 3few_X Colicin S4; cell lysis, 40.9 23 0.00078 28.9 3.5 77 34-110 184-292 (505)
68 2llk_A Cyclin-D-binding MYB-li 40.4 21 0.0007 21.7 2.5 20 73-93 46-65 (73)
69 2dim_A Cell division cycle 5-l 40.2 18 0.00063 21.2 2.3 20 73-92 33-52 (70)
70 4eb5_C NIFU protein (NIFU-1); 40.1 16 0.00055 25.4 2.2 26 66-91 59-84 (153)
71 3oio_A Transcriptional regulat 39.3 29 0.001 21.6 3.3 21 40-60 5-25 (113)
72 3hm5_A DNA methyltransferase 1 38.8 30 0.001 22.1 3.2 30 62-91 36-76 (93)
73 1tc3_C Protein (TC3 transposas 38.5 35 0.0012 17.1 3.1 17 78-94 18-34 (51)
74 2iw5_B Protein corest, REST co 38.3 20 0.00068 26.8 2.6 21 72-92 155-175 (235)
75 3iz5_v 60S acidic ribosomal pr 37.2 84 0.0029 20.7 5.3 46 44-89 1-56 (113)
76 1bl0_A Protein (multiple antib 37.2 36 0.0012 21.8 3.6 24 38-61 7-30 (129)
77 2din_A Cell division cycle 5-l 36.6 25 0.00084 20.3 2.4 19 73-92 32-50 (66)
78 1ni7_A ER75, hypothetical prot 36.1 48 0.0016 23.0 4.2 35 66-100 86-128 (155)
79 1xb4_A VPS25, hypothetical 23. 34.9 16 0.00055 26.6 1.6 13 45-57 32-44 (202)
80 3aaf_A Werner syndrome ATP-dep 33.5 20 0.0007 24.0 1.9 32 72-103 34-71 (134)
81 4fe7_A Xylose operon regulator 33.4 45 0.0015 25.4 4.1 25 36-60 299-323 (412)
82 1d8j_A General transcription f 32.9 71 0.0024 19.9 4.2 20 38-57 7-27 (81)
83 3g0m_A Cysteine desulfuration 32.2 42 0.0014 22.8 3.3 35 66-100 79-121 (141)
84 1z00_B DNA repair endonuclease 31.8 25 0.00087 21.8 2.0 47 36-92 23-70 (84)
85 3p8c_F ABL interactor 2; actin 31.8 47 0.0016 23.3 3.5 17 40-56 23-39 (159)
86 2ra2_A Putative lipoprotein; X 31.6 35 0.0012 20.4 2.5 18 1-19 1-18 (64)
87 3cuq_C Vacuolar protein-sortin 31.2 20 0.0007 25.5 1.6 12 46-57 36-47 (176)
88 2ftc_M Mitochondrial ribosomal 30.8 34 0.0012 22.2 2.6 21 72-92 13-33 (110)
89 3efy_A CIF (cell cycle inhibit 30.0 39 0.0013 24.2 2.8 84 1-99 49-145 (195)
90 2k9s_A Arabinose operon regula 29.9 50 0.0017 20.3 3.2 15 42-56 3-17 (107)
91 2lbf_B 60S acidic ribosomal pr 29.4 41 0.0014 20.3 2.6 44 45-88 3-56 (70)
92 1txl_A Metal-binding protein Y 29.1 34 0.0012 25.2 2.5 27 66-92 71-97 (215)
93 2xuv_A HDEB, 10K-L protein; un 29.0 18 0.00063 22.4 0.9 26 32-57 39-64 (79)
94 3phx_B Ubiquitin-like protein 28.8 38 0.0013 19.6 2.3 20 1-20 1-20 (79)
95 1i4j_A 50S ribosomal protein L 28.6 39 0.0013 21.9 2.6 22 72-93 17-38 (110)
96 3a1y_A 50S ribosomal protein P 27.3 93 0.0032 17.8 4.5 27 62-88 20-54 (58)
97 3r15_A Factor H binding protei 26.8 29 0.00098 22.3 1.5 14 80-93 76-89 (93)
98 1ofc_X ISWI protein; nuclear p 26.4 18 0.00063 27.9 0.7 20 73-92 134-153 (304)
99 3r8s_S 50S ribosomal protein L 26.1 46 0.0016 21.6 2.6 21 72-92 17-37 (110)
100 2jpc_A SSRB; DNA binding prote 25.1 54 0.0019 17.7 2.5 17 78-94 10-26 (61)
101 1wiz_A DNA-binding protein SAT 24.9 1.4E+02 0.0049 19.2 5.0 48 36-98 15-64 (101)
102 1b0n_B Protein (SINI protein); 24.7 32 0.0011 20.0 1.4 16 80-95 25-40 (57)
103 2ltp_A Nuclear receptor corepr 30.0 16 0.00055 22.8 0.0 20 73-92 39-58 (89)
104 3ol3_A Putative uncharacterize 23.2 70 0.0024 21.0 3.0 76 39-114 8-104 (107)
105 1w0t_A Telomeric repeat bindin 23.0 56 0.0019 17.9 2.2 19 73-91 26-46 (53)
106 1j2j_B ADP-ribosylation factor 23.0 84 0.0029 17.4 2.8 19 72-90 10-28 (45)
107 1zx4_A P1 PARB, plasmid partit 22.1 99 0.0034 22.1 3.9 42 62-103 28-70 (192)
108 4fbj_A CIF, hypothetical prote 22.0 68 0.0023 23.9 3.0 83 1-98 117-214 (261)
109 2dhy_A CUE domain-containing p 21.9 68 0.0023 19.1 2.5 21 36-56 29-49 (67)
110 3gbg_A TCP pilus virulence reg 21.6 1.1E+02 0.0038 21.6 4.2 20 40-59 167-186 (276)
111 4dyq_A Gene 1 protein; GP1, oc 21.6 90 0.0031 20.6 3.4 26 66-94 16-41 (140)
112 1fse_A GERE; helix-turn-helix 21.5 80 0.0027 17.6 2.8 17 78-94 23-39 (74)
113 1m93_A Serine proteinase inhib 20.9 32 0.0011 19.4 0.9 22 75-96 30-51 (55)
114 1je8_A Nitrate/nitrite respons 20.9 80 0.0027 18.6 2.8 20 75-94 30-49 (82)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=4.8e-43 Score=255.86 Aligned_cols=112 Identities=29% Similarity=0.501 Sum_probs=94.8
Q ss_pred CCCCCcEEEEeCCCCeEEecHHHHhhcC-----cC---------C--CcccCCCCChhHHHHHHHHHHhhhcCCCCC---
Q 042635 1 MRHSKKISLKRADGQLFEVEEPVAMDFE-----IE---------D--TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR--- 61 (121)
Q Consensus 1 m~s~~~i~L~SsDG~~f~V~~~~a~~S~-----ie---------d--~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~--- 61 (121)
|| +++|+|+||||++|.|++.+|++|+ |+ + ++||||+|++.+|+|||+||+||+.++++.
T Consensus 4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~ 82 (169)
T 3v7d_A 4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDD 82 (169)
T ss_dssp ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC---
T ss_pred CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccc
Confidence 55 4799999999999999999999999 22 2 579999999999999999999999876321
Q ss_pred ---------c------------------------hhhhHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCHHHHH-HHhh
Q 042635 62 ---------S------------------------PKQEMLDYWTETLANRIKNKSVQYVGKFFGIENNFTPKEEV-ARTQ 107 (121)
Q Consensus 62 ---------~------------------------~~~~Ll~~~c~~vA~~ikgkt~eeiR~~f~I~~d~t~eEe~-ir~e 107 (121)
. ++++||++||++||+||+||||||||++|||+|||||||++ ||+|
T Consensus 83 ~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e 162 (169)
T 3v7d_A 83 DDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE 162 (169)
T ss_dssp -----CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred ccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 1 23499999999999999999999999999999999999999 9999
Q ss_pred cccccC
Q 042635 108 YEWAFE 113 (121)
Q Consensus 108 ~~w~~~ 113 (121)
|+|+|+
T Consensus 163 n~W~~~ 168 (169)
T 3v7d_A 163 NEWAED 168 (169)
T ss_dssp C-----
T ss_pred cccccc
Confidence 999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=6.8e-41 Score=242.17 Aligned_cols=110 Identities=45% Similarity=0.757 Sum_probs=75.2
Q ss_pred CCcEEEEeCCCCeEEecHHHHhhcC-----cCC----CcccCCCCChhHHHHHHHHHHhhhcCCCCC-------------
Q 042635 4 SKKISLKRADGQLFEVEEPVAMDFE-----IED----TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR------------- 61 (121)
Q Consensus 4 ~~~i~L~SsDG~~f~V~~~~a~~S~-----ied----~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~------------- 61 (121)
+++|+|+|+||+.|.|++.+|++|+ +++ ++||||+|++.+|++||+||+||+.++++.
T Consensus 3 ~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~ 82 (160)
T 2p1m_A 3 AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDD 82 (160)
T ss_dssp -----CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC------------------------
T ss_pred CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccch
Confidence 5689999999999999999999999 333 689999999999999999999999764210
Q ss_pred -c------------------------hhhhHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCHHHHH-HHhhcccccC
Q 042635 62 -S------------------------PKQEMLDYWTETLANRIKNKSVQYVGKFFGIENNFTPKEEV-ARTQYEWAFE 113 (121)
Q Consensus 62 -~------------------------~~~~Ll~~~c~~vA~~ikgkt~eeiR~~f~I~~d~t~eEe~-ir~e~~w~~~ 113 (121)
. ++++|+++||++||++|+||||+|||++|||+|||||||++ ||+||+|+|+
T Consensus 83 i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~~ 160 (160)
T 2p1m_A 83 LKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160 (160)
T ss_dssp ------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCccccC
Confidence 1 34599999999999999999999999999999999999999 9999999985
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=5.1e-37 Score=221.24 Aligned_cols=106 Identities=36% Similarity=0.599 Sum_probs=94.7
Q ss_pred cEEEEeCCCCeEEecHHHHhhcC-----cCC---------CcccCCCCChhHHHHHHHHHHhhhcCCCCC----------
Q 042635 6 KISLKRADGQLFEVEEPVAMDFE-----IED---------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR---------- 61 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~~S~-----ied---------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~---------- 61 (121)
+|+|+|+||+.|.|++.+|++|+ +++ ++||||+|++.+|++|++||+||+.++++.
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 49999999999999999999998 332 589999999999999999999999765321
Q ss_pred ---c------------------------hhhhHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCHHHHH-HHhhcccc
Q 042635 62 ---S------------------------PKQEMLDYWTETLANRIKNKSVQYVGKFFGIENNFTPKEEV-ARTQYEWA 111 (121)
Q Consensus 62 ---~------------------------~~~~Ll~~~c~~vA~~ikgkt~eeiR~~f~I~~d~t~eEe~-ir~e~~w~ 111 (121)
. ++++|+++||++||++|+||||+|||++|||+|||||||++ ||+||+|+
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 1 23499999999999999999999999999999999999999 99999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=7.2e-34 Score=201.58 Aligned_cols=94 Identities=35% Similarity=0.542 Sum_probs=76.8
Q ss_pred cEEEEeCCCCeEEecHHHHhhcC-----cC---CCcccCCCCChhHHHHHHHHHHhhhcCCCCC-------------c--
Q 042635 6 KISLKRADGQLFEVEEPVAMDFE-----IE---DTVVPLPNVSTEPLSYIIEFCKAHVEFSKQR-------------S-- 62 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~~S~-----ie---d~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~-------------~-- 62 (121)
.|+|+|+||+.|.|++.+|++|+ ++ +++||||+|++.+|++|++||+||+.++++. .
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~w 82 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVW 82 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTCCSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HH
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCCCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHH
Confidence 59999999999999999999999 33 3689999999999999999999999775321 1
Q ss_pred ----------------------hhhhHHHHHHHHHHHHHhCCCHHHHHhhcCCCCCCCH
Q 042635 63 ----------------------PKQEMLDYWTETLANRIKNKSVQYVGKFFGIENNFTP 99 (121)
Q Consensus 63 ----------------------~~~~Ll~~~c~~vA~~ikgkt~eeiR~~f~I~~d~t~ 99 (121)
++++|+++||++||++|+||||||||++|||+|||||
T Consensus 83 D~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 83 DQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 2349999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.76 E-value=2.9e-19 Score=119.80 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCCCCcEEEEeCCCCeEEecHHHHhhcC-----cC----C--CcccCCCCChhHHHHHHHHHHhhhcCC
Q 042635 1 MRHSKKISLKRADGQLFEVEEPVAMDFE-----IE----D--TVVPLPNVSTEPLSYIIEFCKAHVEFS 58 (121)
Q Consensus 1 m~s~~~i~L~SsDG~~f~V~~~~a~~S~-----ie----d--~~Ipl~~V~s~~L~kVie~c~~h~~~~ 58 (121)
|+ +++|+|+|+||++|.|++.+|++|+ ++ + ++||||+|++.+|+|||+||+||+.++
T Consensus 1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~ 68 (99)
T 1hv2_A 1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYS 68 (99)
T ss_dssp CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccC
Confidence 66 5689999999999999999999999 33 2 689999999999999999999999754
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.75 E-value=2.3e-18 Score=117.87 Aligned_cols=71 Identities=15% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCCcEEEEeCCCCeEEecHHHHhhcC-----cCC---------CcccCCCCChhHHHHHHHHHHhhhcCCCCC---chhh
Q 042635 3 HSKKISLKRADGQLFEVEEPVAMDFE-----IED---------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR---SPKQ 65 (121)
Q Consensus 3 s~~~i~L~SsDG~~f~V~~~~a~~S~-----ied---------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~---~~~~ 65 (121)
.+++|+|+|+||++|.|++++|++|+ |++ ++||||+|++.+|+|||+||+||+.++... .+|+
T Consensus 15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~ 94 (112)
T 1vcb_B 15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP 94 (112)
T ss_dssp --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCC
T ss_pred CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcc
Confidence 35789999999999999999999999 443 489999999999999999999999864332 3343
Q ss_pred ----hHHHHHHH
Q 042635 66 ----EMLDYWTE 73 (121)
Q Consensus 66 ----~Ll~~~c~ 73 (121)
.|+++..+
T Consensus 95 vd~~~lfeLi~A 106 (112)
T 1vcb_B 95 IAPEIALELLMA 106 (112)
T ss_dssp CCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 66666544
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.73 E-value=3.6e-18 Score=113.76 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=55.5
Q ss_pred CcEEEEeCCCCeEEecHHHHhhcC-----cCC---------CcccCCCCChhHHHHHHHHHHhhhcCCCCC---chhh--
Q 042635 5 KKISLKRADGQLFEVEEPVAMDFE-----IED---------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR---SPKQ-- 65 (121)
Q Consensus 5 ~~i~L~SsDG~~f~V~~~~a~~S~-----ied---------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~---~~~~-- 65 (121)
++|+|+|+||++|.|++++|++|+ +++ ++||||+|++.+|+|||+||+||+.++... .+|+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd 80 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 80 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCC
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccC
Confidence 369999999999999999999999 332 489999999999999999999999754322 3343
Q ss_pred --hHHHHHHH
Q 042635 66 --EMLDYWTE 73 (121)
Q Consensus 66 --~Ll~~~c~ 73 (121)
.|+++..+
T Consensus 81 ~~~l~eLi~A 90 (96)
T 2fnj_C 81 PEIALELLMA 90 (96)
T ss_dssp TTTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 66666544
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.66 E-value=1.4e-16 Score=105.88 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=54.9
Q ss_pred cEEEEeCCCCeEEecHHHHhhcC-----cCC---------CcccCCCCChhHHHHHHHHHHhhhcCCCCC---chh----
Q 042635 6 KISLKRADGQLFEVEEPVAMDFE-----IED---------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR---SPK---- 64 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~~S~-----ied---------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~---~~~---- 64 (121)
.|+|+|+||++|.|++.+|++|+ +++ ++||||+|++.+|++||+||+||+.++... .+|
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 69999999999999999999999 332 589999999999999999999998875322 333
Q ss_pred hhHHHHHHH
Q 042635 65 QEMLDYWTE 73 (121)
Q Consensus 65 ~~Ll~~~c~ 73 (121)
+.|+++..+
T Consensus 83 ~~l~eLl~A 91 (97)
T 4ajy_C 83 EIALELLMA 91 (97)
T ss_dssp GGHHHHHHH
T ss_pred HHHHHHHHH
Confidence 256665544
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=96.49 E-value=0.0036 Score=42.42 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=51.5
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC---CcccCCCCChhHHHHHHHHHHhhhcCCCCC-----------chhh
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED---TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR-----------SPKQ 65 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied---~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~-----------~~~~ 65 (121)
-|+|+. +|+.|.+-+.+.. .|. +.. ..|.|++++..+|+.+++|++...-.-... -.+.
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~ 105 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGTGGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVP 105 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC----CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCH
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCCCCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcH
Confidence 366665 6899999999765 565 332 678999999999999999998755432221 1345
Q ss_pred hHHHHHHHHHHHHHhCCCHH
Q 042635 66 EMLDYWTETLANRIKNKSVQ 85 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~e 85 (121)
.|.++|++.+...+.|+++.
T Consensus 106 ~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 106 EAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp HHHHHHHHCCC---------
T ss_pred HHHHHHHHHHHHhccCCCCC
Confidence 88888888888888877654
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=95.75 E-value=0.058 Score=34.43 Aligned_cols=71 Identities=6% Similarity=0.068 Sum_probs=50.6
Q ss_pred cEEEEeCCC---CeEEecHHHHh-hcC-----cCC------CcccCCCCChhHHHHHHHHHHhhhcCCCCCch-------
Q 042635 6 KISLKRADG---QLFEVEEPVAM-DFE-----IED------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSP------- 63 (121)
Q Consensus 6 ~i~L~SsDG---~~f~V~~~~a~-~S~-----ied------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~------- 63 (121)
-|+|+..+| +.|.+.+.+.. .|. +.. ..|.|++++..+++.+++|++...-.-.. +.
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~~~~~-~~~~~ll~~ 88 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEIDLEA-DTVLATLYA 88 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCCCCCT-TTHHHHHHH
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCccCCH-HHHHHHHHH
Confidence 578888876 99999999975 565 221 57899999999999999999875432222 22
Q ss_pred -----hhhHHHHHHHHHHH
Q 042635 64 -----KQEMLDYWTETLAN 77 (121)
Q Consensus 64 -----~~~Ll~~~c~~vA~ 77 (121)
+..|.+.|++.+..
T Consensus 89 A~~~~~~~L~~~c~~~l~~ 107 (109)
T 2vkp_A 89 AKKYIVPALAKACVNFLET 107 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHh
Confidence 33666666666544
No 11
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=95.68 E-value=0.045 Score=37.59 Aligned_cols=83 Identities=12% Similarity=0.136 Sum_probs=59.2
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cC----C---CcccCCCCChhHHHHHHHHHHhhhcCCCCC-----------
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IE----D---TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR----------- 61 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ie----d---~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~----------- 61 (121)
-|+|+. +|+.|.+.+.+.. .|. +. + ..|.|++++..+++.+++|++...-.....
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~ 114 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 114 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHH
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 366665 7899999999874 566 21 1 678999999999999999998654432111
Q ss_pred chhhhHHHHHHHHHHHHHhCCCHHHHHh
Q 042635 62 SPKQEMLDYWTETLANRIKNKSVQYVGK 89 (121)
Q Consensus 62 ~~~~~Ll~~~c~~vA~~ikgkt~eeiR~ 89 (121)
-.+..|.+.|++.+...+...+.-++..
T Consensus 115 ~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 115 YALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1235888888888887777777666544
No 12
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=95.53 E-value=0.069 Score=35.04 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=49.6
Q ss_pred cEEEEeCCCCeEEecHHHH-hhcC-----cCC--CcccCCCCChhHHHHHHHHHHhhhcCCCCCchh------------h
Q 042635 6 KISLKRADGQLFEVEEPVA-MDFE-----IED--TVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSPK------------Q 65 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a-~~S~-----ied--~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~~------------~ 65 (121)
-|+|+. +|+.|.+-+.+. ..|. +.. ..|.|++++..+++.+++|++...-.- +.+.+ .
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~~~-~~~~~~~ll~~A~~~~i~ 107 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQA-KAEDLDDLLYAAEILEIE 107 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCC-CGGGHHHHHHHHHHHTCH
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCCCcEEEeCCCCHHHHHHHHHhhcCCCcCC-CHHHHHHHHHHHHHHCCH
Confidence 366665 689999999987 4666 333 678999999999999999998754332 22222 3
Q ss_pred hHHHHHHHHHHHH
Q 042635 66 EMLDYWTETLANR 78 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ 78 (121)
+|.+.|++.+...
T Consensus 108 ~L~~~c~~~l~~~ 120 (121)
T 1buo_A 108 YLEEQCLKMLETI 120 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665543
No 13
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=94.62 E-value=0.043 Score=36.63 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=47.4
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC-------CcccCCCCChhHHHHHHHHHHhhhcCCCCCch---------
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED-------TVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSP--------- 63 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied-------~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~--------- 63 (121)
-|+|+. +|+.|.+.+.+.. .|. +.. ..|.|++++..+++.+++|++...-... .+.
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~-~~~~~~ll~~A~ 104 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL-DKMADDLLAAAD 104 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTG-GGTHHHHHHHHH
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCc-HHHHHHHHHHHH
Confidence 366665 6899999999985 565 211 6789999999999999999987644311 122
Q ss_pred ---hhhHHHHHHHHHHHHHhCCC
Q 042635 64 ---KQEMLDYWTETLANRIKNKS 83 (121)
Q Consensus 64 ---~~~Ll~~~c~~vA~~ikgkt 83 (121)
+..|.+.|++.+...+...+
T Consensus 105 ~~~~~~l~~~c~~~l~~~l~~~n 127 (145)
T 4eoz_A 105 KYALERLKVMCEDALCSNLSVEN 127 (145)
T ss_dssp HTTCHHHHHHHHCC---------
T ss_pred HhCHHHHHHHHHHHHHHhCCHHH
Confidence 23666666666655544433
No 14
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=94.51 E-value=0.23 Score=37.01 Aligned_cols=83 Identities=13% Similarity=0.144 Sum_probs=55.1
Q ss_pred cEEEEeC--CCCeEEecHHHHh-hcC-----cCC-------CcccCC------CCChhHHHHHHHHHHhhhcCCCCC---
Q 042635 6 KISLKRA--DGQLFEVEEPVAM-DFE-----IED-------TVVPLP------NVSTEPLSYIIEFCKAHVEFSKQR--- 61 (121)
Q Consensus 6 ~i~L~Ss--DG~~f~V~~~~a~-~S~-----ied-------~~Ipl~------~V~s~~L~kVie~c~~h~~~~~~~--- 61 (121)
-|+|+.. ||+.|.+-+.+.. .|. +.. ..|.|+ +|+..+++.+++|++...-.-...
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~ 113 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVH 113 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHH
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHH
Confidence 3677765 7999999999987 465 221 578887 899999999999998654421111
Q ss_pred --------chhhhHHHHHHHHHHHHHhCCCHHHHH
Q 042635 62 --------SPKQEMLDYWTETLANRIKNKSVQYVG 88 (121)
Q Consensus 62 --------~~~~~Ll~~~c~~vA~~ikgkt~eeiR 88 (121)
-.+.+|.+.|++.+...+...+.-.+.
T Consensus 114 ~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~ 148 (279)
T 3i3n_A 114 EVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH 148 (279)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence 123477777777777766665555443
No 15
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=94.00 E-value=0.11 Score=34.42 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=38.5
Q ss_pred cEEEEeCCCCeEEecHHHHhh-cC-cCC--CcccCCCCChhHHHHHHHHHHhh
Q 042635 6 KISLKRADGQLFEVEEPVAMD-FE-IED--TVVPLPNVSTEPLSYIIEFCKAH 54 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~~-S~-ied--~~Ipl~~V~s~~L~kVie~c~~h 54 (121)
-|+|+. +|+.|.+-+.+... |. +.. ..|.|++|+..+|+.+++|++-.
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~~~~i~l~~v~~~~f~~ll~fiYtg 83 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGRRGQWALGEGISPSTFAQLLNFVYGE 83 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCCCEEEECCSSCCHHHHHHHHHHHTTC
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhcCCCEEEeCCCCHHHHHHHHHHHcCC
Confidence 366665 79999999998865 44 543 67889999999999999999754
No 16
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=93.46 E-value=0.43 Score=34.96 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=38.7
Q ss_pred cEEEEeCCCCeEEecHHHHhh-cC-----c-------CC--CcccCCCCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAMD-FE-----I-------ED--TVVPLPNVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~~-S~-----i-------ed--~~Ipl~~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+.+.+... |. + +. ..|+|++|+..+++.+++|++...-
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI 97 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC
Confidence 466665 68999999999864 44 2 11 5789999999999999999987544
No 17
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=93.45 E-value=0.23 Score=32.43 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=47.3
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC--CcccCCCCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED--TVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTE 73 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied--~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~ 73 (121)
-|+|+. +|+.|.+-+.+.. .|. +.. ..|.|++++..+++.+++|++-..-.....+.+..|+.++..
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~ 107 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQL 107 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHH
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHH
Confidence 366664 7899999999885 555 332 678999999999999999987643322222455667766544
No 18
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=93.41 E-value=0.3 Score=31.60 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=38.1
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----c-----CC--CcccCCCCChhHHHHHHHHHHhhh
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----I-----ED--TVVPLPNVSTEPLSYIIEFCKAHV 55 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----i-----ed--~~Ipl~~V~s~~L~kVie~c~~h~ 55 (121)
-|+|+. +|+.|.+.+.+.. .|. + +. ..|.|++++..+++.+++|++...
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~ 88 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTAT 88 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSC
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCC
Confidence 466665 6899999999986 455 1 11 678899999999999999998654
No 19
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=92.74 E-value=0.28 Score=31.97 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=38.9
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-cC------CCcccCCCCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-IE------DTVVPLPNVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-ie------d~~Ipl~~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+-+.+.. .|. +. ...|.|+.++..+++.+++|++-..-
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~~~i~l~~~~~~~f~~ll~~~Ytg~~ 86 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKL 86 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCCSGGGGGGCCHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCCCCEEEeCCCCHHHHHHHHHHHcCCCC
Confidence 366664 6899999999875 565 22 26788899999999999999987543
No 20
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=92.72 E-value=0.21 Score=32.58 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=39.1
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC---CcccCCCCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED---TVVPLPNVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied---~~Ipl~~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+-+.+.. .|. +.. ..|.|++++..+++.+++|++-..-
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~~iYtg~~ 84 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGSGGSVVLPAGFAEIFGLLLDFFYTGHL 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTTCCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence 366664 6899999999875 455 222 6789999999999999999987543
No 21
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=92.66 E-value=0.83 Score=29.30 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=37.3
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC---CcccCC--CCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED---TVVPLP--NVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied---~~Ipl~--~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+.+.+.. .|. +.. ..|.|+ +++..+++.+++|++...-
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCCCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 366655 5899999999974 565 222 555555 9999999999999987543
No 22
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=92.15 E-value=0.96 Score=29.45 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=38.6
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cC-----C-CcccC-CCCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IE-----D-TVVPL-PNVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ie-----d-~~Ipl-~~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+-+.+.. .|. +. . ..|.| ++++..+++.+++|++...-
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 466665 5899999999884 555 22 1 67889 89999999999999986543
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=90.92 E-value=0.64 Score=34.95 Aligned_cols=82 Identities=12% Similarity=0.146 Sum_probs=54.3
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cC----C---CcccCCCCChhHHHHHHHHHHhhhcCCCCC-----------
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IE----D---TVVPLPNVSTEPLSYIIEFCKAHVEFSKQR----------- 61 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ie----d---~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~----------- 61 (121)
-|+|+. +|+.|.+.+.+.. +|. +. + ..|.|++++..+++.+++|++...-.....
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~ 254 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHH
Confidence 466665 7899999999874 565 22 1 678999999999999999998643221110
Q ss_pred chhhhHHHHHHHHHHHHHhCCCHHHHH
Q 042635 62 SPKQEMLDYWTETLANRIKNKSVQYVG 88 (121)
Q Consensus 62 ~~~~~Ll~~~c~~vA~~ikgkt~eeiR 88 (121)
-.+..|..+|.+.+...+...+.-++-
T Consensus 255 ~~~~~l~~~c~~~l~~~~~~~n~~~~l 281 (312)
T 3hqi_A 255 YALERLKVMCEDALCSNLSVENAAEIL 281 (312)
T ss_dssp TTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred hCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 123467777777766555555554443
No 24
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=90.01 E-value=0.81 Score=30.03 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=46.2
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-c-------CCCcccCC-CCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-I-------EDTVVPLP-NVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTE 73 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-i-------ed~~Ipl~-~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~ 73 (121)
-|+|+. +|+.|.+-+.+.. .|. + ....|.|| +++..+++.+++|++...-. ...+++..|+.++..
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~-i~~~~~~~ll~~A~~ 110 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLS-MNVGDQDLLMYTAGF 110 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEE-CCTTTHHHHHHHHHH
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccc-cCHHHHHHHHHHHHH
Confidence 366665 7999999999886 555 2 12678897 89999999999999865432 222445555555443
No 25
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=89.25 E-value=0.76 Score=31.01 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=44.3
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----c-----C---C-CcccCCCCChhHHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----I-----E---D-TVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDY 70 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----i-----e---d-~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~ 70 (121)
-|+|+. +|+.|.+-+.+.. .|. + + . ..|.|++|+..+++.+++|++-..-. ...+.+..|+.+
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~-i~~~~v~~ll~~ 126 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR-LNEDTIQDVVQA 126 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCC-CCTTTHHHHHHH
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCC-CCHHHHHHHHHH
Confidence 366665 6899999999876 555 1 1 1 57899999999999999999754332 222444455544
Q ss_pred HH
Q 042635 71 WT 72 (121)
Q Consensus 71 ~c 72 (121)
|.
T Consensus 127 A~ 128 (144)
T 2ppi_A 127 AD 128 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=88.94 E-value=0.61 Score=31.06 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=37.7
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC-----CcccCC-CCChhHHHHHHHHHHhhhc
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED-----TVVPLP-NVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied-----~~Ipl~-~V~s~~L~kVie~c~~h~~ 56 (121)
-|+|+. +|+.|.+-+.+.. .|. +.. ..|.|+ +|+...++.+++|++...-
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~ 99 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL 99 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 366665 5899999999985 555 221 457786 8999999999999987543
No 27
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=88.28 E-value=1.5 Score=28.47 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=45.8
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cC-----CCcccCCC-CChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IE-----DTVVPLPN-VSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTE 73 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ie-----d~~Ipl~~-V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~ 73 (121)
-|+|+. +|+.|.+-+.+.. .|. +. ...|.|++ ++...++.+++|++...-. ...+.+..|+.++..
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~-~~~~~v~~ll~~A~~ 111 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLL-LSRENIREVIRCAEF 111 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEE-ECTTTHHHHHHHHHH
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceE-ECHHHHHHHHHHHHH
Confidence 366664 6999999999876 455 22 15688998 9999999999999754321 222455566666544
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=74.11 E-value=2.1 Score=26.46 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999998764
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=71.83 E-value=4.9 Score=25.81 Aligned_cols=34 Identities=6% Similarity=0.274 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHhhcC------CC-CCCCHHHHH-HHh
Q 042635 73 ETLANRIKNKSVQYVGKFFG------IE-NNFTPKEEV-ART 106 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~------I~-~d~t~eEe~-ir~ 106 (121)
..||..+.|+|+.+.|+.+. |. ..+|+||+. +..
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 36889999999999999853 33 369999988 554
No 30
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=70.94 E-value=7.5 Score=25.02 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=44.5
Q ss_pred cEEEEeCCCCeEEecHHHHh-hcC-----cCC-----CcccCC-CCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 042635 6 KISLKRADGQLFEVEEPVAM-DFE-----IED-----TVVPLP-NVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTE 73 (121)
Q Consensus 6 ~i~L~SsDG~~f~V~~~~a~-~S~-----ied-----~~Ipl~-~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~ 73 (121)
-|+|+. +|+.|.+-+.+.. .|. +.. ..|.++ +|+...++.+++|++...-. ...+.+..|+.++.+
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~-i~~~~v~~ll~~A~~ 108 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLI-LSKENVDEVCKCVEF 108 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEE-EETTTHHHHHHHHHH
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcc-cCHHHHHHHHHHHHH
Confidence 366655 5899999999875 555 222 457785 89999999999999875432 112445566655543
No 31
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=70.13 E-value=3.2 Score=25.36 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=15.7
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+ |||++|+++.|.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 3578887 999999998764
No 32
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=68.49 E-value=1.2 Score=27.72 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=17.4
Q ss_pred HHHHHHhCCCHHHHHhhcCCCC
Q 042635 74 TLANRIKNKSVQYVGKFFGIEN 95 (121)
Q Consensus 74 ~vA~~ikgkt~eeiR~~f~I~~ 95 (121)
.||..+-|||++|+++.+.++.
T Consensus 48 kIA~~VpGKT~eEVk~hY~~~~ 69 (74)
T 4eef_G 48 KVAQYVKGRTPEEVKKHYELEH 69 (74)
T ss_dssp TTGGGSCSSCHHHHHGGGC---
T ss_pred HHHHHcCCCCHHHHHHHHHHhh
Confidence 5888899999999999988763
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.74 E-value=4.1 Score=23.54 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|+.|+|..|.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 46899999999999998864
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=66.75 E-value=4.4 Score=25.77 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCHHHHHhhcC------CC-CCCCHHHHH-HHh
Q 042635 73 ETLANRIKNKSVQYVGKFFG------IE-NNFTPKEEV-ART 106 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~------I~-~d~t~eEe~-ir~ 106 (121)
..||..+.|+|+.++|+.+. |. ..+|+||+. +..
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 46888999999999999863 22 368999988 554
No 35
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=65.90 E-value=4.4 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
.++|.++.+||++|++.+|-
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45899999999999999984
No 36
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=64.54 E-value=5.2 Score=24.72 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|+.|+|..|.
T Consensus 41 ~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 41 NKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp HHHHHHHSSCCHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46999999999999999976
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=62.50 E-value=8.7 Score=25.30 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCHHHHHhhcC------CC-CCCCHHHHH-HHh
Q 042635 73 ETLANRIKNKSVQYVGKFFG------IE-NNFTPKEEV-ART 106 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~------I~-~d~t~eEe~-ir~ 106 (121)
..||..+.|+|+.++|+.|. |. ..+|+||+. +..
T Consensus 51 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 51 SDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 47899999999999999864 22 368999987 544
No 38
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=61.82 E-value=4.9 Score=25.78 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.1
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+-|+|.+|+|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 47999999999999999986
No 39
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.66 E-value=3 Score=25.59 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||.++-|+|..|+|..|.
T Consensus 45 ~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 45 DKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999999875
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=59.32 E-value=7.3 Score=22.33 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=16.9
Q ss_pred HHHHHHHh-CCCHHHHHhhc
Q 042635 73 ETLANRIK-NKSVQYVGKFF 91 (121)
Q Consensus 73 ~~vA~~ik-gkt~eeiR~~f 91 (121)
..||..+. |+|+.|.|..|
T Consensus 33 ~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 33 ADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHH
Confidence 57899999 99999999876
No 41
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.20 E-value=6.9 Score=23.44 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCHHHHHhhc
Q 042635 72 TETLANRIKNKSVQYVGKFF 91 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~f 91 (121)
-..||..+.|+|+.|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 34789999999999999887
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.04 E-value=7.7 Score=22.50 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||.++.|||+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46899999999999998763
No 43
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=54.69 E-value=16 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCHHHHHhhcC------CCC-CCCHHHHH-HHh
Q 042635 73 ETLANRIKNKSVQYVGKFFG------IEN-NFTPKEEV-ART 106 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~------I~~-d~t~eEe~-ir~ 106 (121)
..||..+.|+|+.+.|+.+. +.. .+|+||.+ +..
T Consensus 34 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 34 KMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 46899999999999999853 333 58999987 544
No 44
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=54.41 E-value=9.4 Score=25.62 Aligned_cols=27 Identities=11% Similarity=-0.018 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
.+--.++-.++.+++|||.+|.+++.+
T Consensus 65 ais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 65 GSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 555555667799999999999987654
No 45
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=54.30 E-value=9.6 Score=31.09 Aligned_cols=41 Identities=12% Similarity=0.318 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCHHHHHhhcCCCCCCCHHHHH--HHhhcccc
Q 042635 71 WTETLANRIKNKSVQYVGKFFGIENNFTPKEEV--ARTQYEWA 111 (121)
Q Consensus 71 ~c~~vA~~ikgkt~eeiR~~f~I~~d~t~eEe~--ir~e~~w~ 111 (121)
+-+-|...|.-||||||-+.+|+++|-.+-.|+ -..+..|-
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~k~~a~~~~~ 206 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWD 206 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchHHHHHHHHHHHHhhh
Confidence 344567788999999999999999997665555 33355663
No 46
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=53.66 E-value=10 Score=25.72 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
.+--.++-.++.+++|||.+|.+++.+
T Consensus 65 ais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 65 AISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp HHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 555666667899999999999998863
No 47
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=52.97 E-value=7 Score=25.98 Aligned_cols=33 Identities=15% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHhCCCHHHHHhhc------CCCC-CCCHHHHH-HHh
Q 042635 74 TLANRIKNKSVQYVGKFF------GIEN-NFTPKEEV-ART 106 (121)
Q Consensus 74 ~vA~~ikgkt~eeiR~~f------~I~~-d~t~eEe~-ir~ 106 (121)
.||..+.|+|+.+.|+.+ ++.. .+|+||.+ +..
T Consensus 27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 567888899999999986 4443 59999998 544
No 48
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=51.56 E-value=18 Score=22.45 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhhhcCCCC
Q 042635 42 EPLSYIIEFCKAHVEFSKQ 60 (121)
Q Consensus 42 ~~L~kVie~c~~h~~~~~~ 60 (121)
..+.+|++|+..|...+..
T Consensus 2 ~~i~~~~~~i~~~~~~~~~ 20 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPIT 20 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHcccCCCC
Confidence 4688999999988766543
No 49
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=50.77 E-value=12 Score=25.67 Aligned_cols=27 Identities=11% Similarity=0.046 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
.+--.++-.++.+++|||.+|.+++.+
T Consensus 67 ais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 67 SISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp HHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 555556667899999999999998864
No 50
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.35 E-value=12 Score=22.28 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||.++.|+|..++|..|.
T Consensus 32 ~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 32 TKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57899999999999999864
No 51
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=49.94 E-value=20 Score=22.01 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHhhhcCCC
Q 042635 41 TEPLSYIIEFCKAHVEFSK 59 (121)
Q Consensus 41 s~~L~kVie~c~~h~~~~~ 59 (121)
+..+++|++|...|..++.
T Consensus 1 s~~~~~i~~~i~~~~~~~~ 19 (103)
T 3lsg_A 1 SNAKELIQNIIEESYTDSQ 19 (103)
T ss_dssp CHHHHHHHHHHHHHTTCTT
T ss_pred ChHHHHHHHHHHHHccCCC
Confidence 3578899999998877643
No 52
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=55.24 E-value=3.5 Score=25.34 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCHHHHHhhcC
Q 042635 71 WTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 71 ~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
+-+.+|.++ ||||+||..+|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 455788888 999999998885
No 53
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=48.01 E-value=16 Score=25.43 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
.+--.++-.++.+++|||.+|.+++.+
T Consensus 66 ais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 66 TISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 555556667899999999999998865
No 54
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=48.01 E-value=9.6 Score=21.02 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|+.++|..+.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRWQ 46 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46888899999999998763
No 55
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=47.45 E-value=17 Score=24.76 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=26.7
Q ss_pred HHHHHHHhCCCHHHHHhhcC------CC-CCCCHHHHH-HHh
Q 042635 73 ETLANRIKNKSVQYVGKFFG------IE-NNFTPKEEV-ART 106 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~------I~-~d~t~eEe~-ir~ 106 (121)
..||..+.|.|+.++|..+. |. ..+|+||.. +..
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 47899999999999999864 33 358999987 544
No 56
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=47.01 E-value=14 Score=23.61 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=13.1
Q ss_pred HHHHHHh-CCCHHHHHhhc
Q 042635 74 TLANRIK-NKSVQYVGKFF 91 (121)
Q Consensus 74 ~vA~~ik-gkt~eeiR~~f 91 (121)
.|..+++ |+|.+||+++|
T Consensus 48 ~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 48 KVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 4444444 99999999885
No 57
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=45.99 E-value=15 Score=23.10 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=13.1
Q ss_pred HHHHHHh-CCCHHHHHhhc
Q 042635 74 TLANRIK-NKSVQYVGKFF 91 (121)
Q Consensus 74 ~vA~~ik-gkt~eeiR~~f 91 (121)
.|-.+++ |+|.+||+.+|
T Consensus 51 ~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 51 QIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 4444444 99999999885
No 58
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=45.74 E-value=52 Score=21.38 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcCCCCC-chhhhHHHHH--------HHHHHHHHhCCCHHHHHh
Q 042635 44 LSYIIEFCKAHVEFSKQR-SPKQEMLDYW--------TETLANRIKNKSVQYVGK 89 (121)
Q Consensus 44 L~kVie~c~~h~~~~~~~-~~~~~Ll~~~--------c~~vA~~ikgkt~eeiR~ 89 (121)
|+.|-.|+--|.....++ ++|+.||..+ -..++..++||+.+++-.
T Consensus 1 M~yvaAyLL~~~gG~e~tad~I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eLIa 55 (106)
T 3izc_v 1 MKYLAAYLLLNAAGNTPDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELIT 55 (106)
T ss_dssp CHHHHHHHHHHHHTCCCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHHHH
Confidence 356777887776643333 7888888763 557788889999988874
No 59
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=45.51 E-value=11 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
++--.++..++.+++|||.+|.+++.+
T Consensus 64 ais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 64 GSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp TTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 555555667899999999999998755
No 60
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=45.09 E-value=14 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|+.++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 32 KFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 46899999999999999874
No 61
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=44.62 E-value=17 Score=23.07 Aligned_cols=22 Identities=0% Similarity=0.004 Sum_probs=15.9
Q ss_pred CCChhHHHHHHHHHHhhhcCCC
Q 042635 38 NVSTEPLSYIIEFCKAHVEFSK 59 (121)
Q Consensus 38 ~V~s~~L~kVie~c~~h~~~~~ 59 (121)
.+....+.+|++|+..|...+.
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~ 24 (120)
T 3mkl_A 3 ALQPNMRTRVCTVINNNIAHEW 24 (120)
T ss_dssp --CCCHHHHHHHHHHTSTTSCC
T ss_pred cccHHHHHHHHHHHHHhccCCC
Confidence 4567788999999998876644
No 62
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=43.41 E-value=10 Score=24.17 Aligned_cols=18 Identities=0% Similarity=0.098 Sum_probs=16.8
Q ss_pred CCCHHHHHhhcCCCCCCC
Q 042635 81 NKSVQYVGKFFGIENNFT 98 (121)
Q Consensus 81 gkt~eeiR~~f~I~~d~t 98 (121)
|.||+|=|+.||++.|+.
T Consensus 43 gltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp CSCHHHHHHHTTCGGGCC
T ss_pred CCCHHHHHHHhCCCCCCc
Confidence 999999999999999874
No 63
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.57 E-value=26 Score=21.67 Aligned_cols=20 Identities=5% Similarity=0.198 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHhhhcCCCC
Q 042635 41 TEPLSYIIEFCKAHVEFSKQ 60 (121)
Q Consensus 41 s~~L~kVie~c~~h~~~~~~ 60 (121)
...+.+|++|...|...+..
T Consensus 4 ~~~i~~~~~~i~~~~~~~~~ 23 (108)
T 3oou_A 4 SPIIQNVLSYITEHFSEGMS 23 (108)
T ss_dssp CCHHHHHHHHHHHHTTSCCC
T ss_pred hHHHHHHHHHHHHHhcCCCC
Confidence 45788999999998776443
No 64
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=42.18 E-value=15 Score=23.57 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=23.9
Q ss_pred CHHHHHhhcCCCCCCCHHHHH-HHhhcccccCCC
Q 042635 83 SVQYVGKFFGIENNFTPKEEV-ARTQYEWAFEGL 115 (121)
Q Consensus 83 t~eeiR~~f~I~~d~t~eEe~-ir~e~~w~~~~~ 115 (121)
|.--.|++++ ++|++|.+ +..++.|.++++
T Consensus 50 t~~sfr~m~~---~lt~~ek~elieeFn~G~e~i 80 (90)
T 1jr5_A 50 NQNSFRKIVS---ELTQEDKKTLIDEFNEGFEGV 80 (90)
T ss_dssp CSHHHHHHHH---TCCHHHHHHHHTTSSSSSTTT
T ss_pred HHHHHHHHHH---HCCHHHHHHHHHHHhccchHH
Confidence 4555677665 78999999 999999998875
No 65
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=42.11 E-value=10 Score=20.94 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|..++|..|.
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 27 SVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46888889999999999864
No 66
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=42.00 E-value=22 Score=22.72 Aligned_cols=53 Identities=8% Similarity=0.174 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHh--CC------CHHHHHhhcCCC
Q 042635 38 NVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTETLANRIK--NK------SVQYVGKFFGIE 94 (121)
Q Consensus 38 ~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~~vA~~ik--gk------t~eeiR~~f~I~ 94 (121)
.++.+.|..||++.+.- .-..+|+..+.-.|+++|..+- ++ |++.+.+++|.+
T Consensus 32 ~i~d~al~~iI~~YTRE----aGVRnLer~i~~i~RK~a~~i~~~~~~~~v~v~~~~l~~~LG~~ 92 (94)
T 1qzm_A 32 TVDDSAIIGIIRYYTRE----AGVRGLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 92 (94)
T ss_dssp EECHHHHHHHHHHHCCC----SSSHHHHHHHHHHHHHHHHHHHTCTTCCCEEECTTTTHHHHCSC
T ss_pred eECHHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHHHHHHcCCCCCeeECHHHHHHHcCCC
Confidence 47889999999874432 1125677888888998887765 32 456666666654
No 67
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=40.95 E-value=23 Score=28.92 Aligned_cols=77 Identities=4% Similarity=0.022 Sum_probs=49.2
Q ss_pred ccCCCCChhHHHHHHHHHHhhhcCCCCC-chhh---------------------------hH--HHHHHHHHHHHHhCCC
Q 042635 34 VPLPNVSTEPLSYIIEFCKAHVEFSKQR-SPKQ---------------------------EM--LDYWTETLANRIKNKS 83 (121)
Q Consensus 34 Ipl~~V~s~~L~kVie~c~~h~~~~~~~-~~~~---------------------------~L--l~~~c~~vA~~ikgkt 83 (121)
+-+|+=.+.-++++-++...-....|+. .+++ +. -+-+-+-|.+.+.-||
T Consensus 184 ~~~~~~~~~r~e~~k~~a~~~~~~~p~nvr~~~v~v~~f~y~v~l~d~g~~~~~~rt~vrpyvgsekakagim~k~~hkt 263 (505)
T 3few_X 184 LGFNKDESQRQEKAKQQAEDAWDRLPPNVRKFDVDVEQFHYLVVLDDYGNVLSVTRTGVRPYVGSEKAKAGIMDKVDHKT 263 (505)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHTSGGGCCEEEEEETTEEEEEEECTTCCEEEEEEEECCCCCTTHHHHHHHHHHTTCCC
T ss_pred hCCCccchHHHHHHHHHHHHhhhhCCCchheeeecccceEEEEEEccCcchhhhhhhcccccccchhhhhhhHHhhccCC
Confidence 3356667778888888877655544433 1110 00 1224455667889999
Q ss_pred HHHHHhhcCCCCCCCHHHH-H-HHhhccc
Q 042635 84 VQYVGKFFGIENNFTPKEE-V-ARTQYEW 110 (121)
Q Consensus 84 ~eeiR~~f~I~~d~t~eEe-~-ir~e~~w 110 (121)
||||-+.+|+.+|.+.-|+ + ....+.|
T Consensus 264 peeiyealgfn~de~qrq~~ak~~a~d~~ 292 (505)
T 3few_X 264 PEEIYEALGFNNEEPQRQNQAKKAAYDVF 292 (505)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 9999999999998754443 4 5556666
No 68
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=40.37 E-value=21 Score=21.70 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCHHHHHhhcCC
Q 042635 73 ETLANRIKNKSVQYVGKFFGI 93 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~I 93 (121)
..||..+ |.|..++|..|..
T Consensus 46 ~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 46 ATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp HHHHHHH-TSCHHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHHH
Confidence 4689999 9999999998863
No 69
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.21 E-value=18 Score=21.17 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|+.++|+.+.
T Consensus 33 ~~Ia~~l~~Rt~~qcr~Rw~ 52 (70)
T 2dim_A 33 SRIASLLHRKSAKQCKARWY 52 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 57899999999999999863
No 70
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=40.06 E-value=16 Score=25.39 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhc
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFF 91 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f 91 (121)
.+--.++..++.+++|||.+|.+++.
T Consensus 59 ais~ASaS~mtelv~GKtleEA~~i~ 84 (153)
T 4eb5_C 59 AAAIATSSMATEMAKGKTIEEALKIT 84 (153)
T ss_dssp HHHHHHHHHHHHHHTTCBHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 55566666789999999999998654
No 71
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=39.30 E-value=29 Score=21.61 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHhhhcCCCC
Q 042635 40 STEPLSYIIEFCKAHVEFSKQ 60 (121)
Q Consensus 40 ~s~~L~kVie~c~~h~~~~~~ 60 (121)
+...+.+|++|+..|...+..
T Consensus 5 ~~~~i~~~~~~i~~~~~~~~~ 25 (113)
T 3oio_A 5 SQPKLTEAVSLMEANIEEPLS 25 (113)
T ss_dssp GCHHHHHHHHHHHTCSSSCCC
T ss_pred chHHHHHHHHHHHhhhcCCCC
Confidence 346788999999988776543
No 72
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=38.78 E-value=30 Score=22.12 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.1
Q ss_pred chhhhHHHHHHH------HHHHHH-----hCCCHHHHHhhc
Q 042635 62 SPKQEMLDYWTE------TLANRI-----KNKSVQYVGKFF 91 (121)
Q Consensus 62 ~~~~~Ll~~~c~------~vA~~i-----kgkt~eeiR~~f 91 (121)
++-+-|++||-+ .||+.. .+.|.|+|+.+|
T Consensus 36 EETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 36 AETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHH
Confidence 445699999865 589998 478999999876
No 73
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.46 E-value=35 Score=17.11 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=14.6
Q ss_pred HHhCCCHHHHHhhcCCC
Q 042635 78 RIKNKSVQYVGKFFGIE 94 (121)
Q Consensus 78 ~ikgkt~eeiR~~f~I~ 94 (121)
...|.|..+|-+.|||.
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34689999999999987
No 74
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=38.30 E-value=20 Score=26.83 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.5
Q ss_pred HHHHHHHHhCCCHHHHHhhcC
Q 042635 72 TETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~f~ 92 (121)
-..||..+.|||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999975
No 75
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=37.17 E-value=84 Score=20.66 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhcCC--CCCchhhhHHHHH--------HHHHHHHHhCCCHHHHHh
Q 042635 44 LSYIIEFCKAHVEFS--KQRSPKQEMLDYW--------TETLANRIKNKSVQYVGK 89 (121)
Q Consensus 44 L~kVie~c~~h~~~~--~~~~~~~~Ll~~~--------c~~vA~~ikgkt~eeiR~ 89 (121)
|+.|-.|+--|.... +..++|+.||..+ -..++..++||+.+++-.
T Consensus 1 M~yvaAylL~~l~G~~~ptad~I~~ILkAaGveVe~~~~~lf~~aL~gk~I~eLIa 56 (113)
T 3iz5_v 1 MKFIAAYLLAYLSGNASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLA 56 (113)
T ss_dssp CHHHHHHHHHHHHTCCCCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCCHHHHHH
Confidence 356777887776543 3337888888764 557788889999998863
No 76
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.16 E-value=36 Score=21.80 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHhhhcCCCCC
Q 042635 38 NVSTEPLSYIIEFCKAHVEFSKQR 61 (121)
Q Consensus 38 ~V~s~~L~kVie~c~~h~~~~~~~ 61 (121)
+-+...+.+|++|...|...+...
T Consensus 7 ~~~~~~i~~~~~~i~~~~~~~~sl 30 (129)
T 1bl0_A 7 NTDAITIHSILDWIEDNLESPLSL 30 (129)
T ss_dssp --CHHHHHHHHHHHHTTTTSCCCC
T ss_pred cchHHHHHHHHHHHHHccCCCCCH
Confidence 456778999999999987766443
No 77
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.62 E-value=25 Score=20.34 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||. +-|+|+.++|..|.
T Consensus 32 ~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 32 RTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp HHHHH-HHSSCHHHHHHHHH
T ss_pred HHHhc-ccCcCHHHHHHHHH
Confidence 46888 67999999999875
No 78
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=36.15 E-value=48 Score=22.99 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhh--------cCCCCCCCHH
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKF--------FGIENNFTPK 100 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~--------f~I~~d~t~e 100 (121)
.++.--++.+...+.|+||+||.++ +|+..-+||-
T Consensus 86 ~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 86 RIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 4444445666677799999999865 6777777775
No 79
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=34.86 E-value=16 Score=26.60 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhcC
Q 042635 45 SYIIEFCKAHVEF 57 (121)
Q Consensus 45 ~kVie~c~~h~~~ 57 (121)
..|+.||+||+-.
T Consensus 32 ~LIL~ycr~~ki~ 44 (202)
T 1xb4_A 32 DIISQYCKTKKIW 44 (202)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCee
Confidence 3589999999874
No 80
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=33.54 E-value=20 Score=23.96 Aligned_cols=32 Identities=13% Similarity=0.044 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCHHHHHh------hcCCCCCCCHHHHH
Q 042635 72 TETLANRIKNKSVQYVGK------FFGIENNFTPKEEV 103 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~------~f~I~~d~t~eEe~ 103 (121)
..+|++.++|+..+.|++ .||+-.|++..+..
T Consensus 34 ~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~ 71 (134)
T 3aaf_A 34 IGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWK 71 (134)
T ss_dssp THHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHH
T ss_pred ccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHH
Confidence 568899999988777776 59999999998887
No 81
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=33.39 E-value=45 Score=25.40 Aligned_cols=25 Identities=4% Similarity=0.129 Sum_probs=19.3
Q ss_pred CCCCChhHHHHHHHHHHhhhcCCCC
Q 042635 36 LPNVSTEPLSYIIEFCKAHVEFSKQ 60 (121)
Q Consensus 36 l~~V~s~~L~kVie~c~~h~~~~~~ 60 (121)
.|......+.++++|...|...+..
T Consensus 299 ~~~~~d~~~~~~~~~i~~~~~~~~~ 323 (412)
T 4fe7_A 299 YRSLTDPAVIQAMHYIRNHACKGIK 323 (412)
T ss_dssp CCCCCCHHHHHHHHHHHHHGGGTCC
T ss_pred ccccccHHHHHHHHHHHhhccCCCC
Confidence 3456778999999999999765443
No 82
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=32.86 E-value=71 Score=19.90 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=15.0
Q ss_pred CCChhHHHHHHHHHH-hhhcC
Q 042635 38 NVSTEPLSYIIEFCK-AHVEF 57 (121)
Q Consensus 38 ~V~s~~L~kVie~c~-~h~~~ 57 (121)
.....+|.+|++|++ .|...
T Consensus 7 ~~~f~~lakiV~~mK~rh~~g 27 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRHQRG 27 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHHHT
T ss_pred ccceehHHHHHHHHHHhhccC
Confidence 356678999999998 56654
No 83
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=32.21 E-value=42 Score=22.84 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhh--------cCCCCCCCHH
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKF--------FGIENNFTPK 100 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~--------f~I~~d~t~e 100 (121)
.++.--+..+...+.|+||+||.++ +|+..-+||-
T Consensus 79 ~IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 121 (141)
T 3g0m_A 79 AIVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPS 121 (141)
T ss_dssp HHHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 4444445556666799999999865 5666666663
No 84
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=31.81 E-value=25 Score=21.78 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCCCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHHHHHHHHhCCC-HHHHHhhcC
Q 042635 36 LPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTETLANRIKNKS-VQYVGKFFG 92 (121)
Q Consensus 36 l~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~~vA~~ikgkt-~eeiR~~f~ 92 (121)
||.|.....++++.++. .++.|.++.-..++..|..+. .+.|.++|+
T Consensus 23 IpGIG~kr~~~LL~~Fg----------Sl~~i~~AS~eEL~~vig~~~~A~~I~~~l~ 70 (84)
T 1z00_B 23 MPGVNAKNCRSLMHHVK----------NIAELAALSQDELTSILGNAANAKQLYDFIH 70 (84)
T ss_dssp CSSCCHHHHHHHHHHSS----------CHHHHHHSCHHHHHHHHSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHcC----------CHHHHHHCCHHHHHHHhCchHHHHHHHHHHH
Confidence 67888888888776542 245677777777777776666 789999887
No 85
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=31.80 E-value=47 Score=23.33 Aligned_cols=17 Identities=18% Similarity=0.425 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHhhhc
Q 042635 40 STEPLSYIIEFCKAHVE 56 (121)
Q Consensus 40 ~s~~L~kVie~c~~h~~ 56 (121)
+..-|.+|.+||++.+-
T Consensus 23 s~~nL~~vAdYCE~nY~ 39 (159)
T 3p8c_F 23 SYTNLERVADYCENNYI 39 (159)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 34568999999997764
No 86
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=31.57 E-value=35 Score=20.40 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=10.7
Q ss_pred CCCCCcEEEEeCCCCeEEe
Q 042635 1 MRHSKKISLKRADGQLFEV 19 (121)
Q Consensus 1 m~s~~~i~L~SsDG~~f~V 19 (121)
|||+ .+.+.+.||+.+..
T Consensus 1 ~sSS-~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGP-NYVMHTNDGRSIVT 18 (64)
T ss_dssp ---C-CEEEEETTSCEEEC
T ss_pred CCCC-CEEEEeCCCcEEEc
Confidence 5654 47778888887743
No 87
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=31.16 E-value=20 Score=25.47 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=10.0
Q ss_pred HHHHHHHhhhcC
Q 042635 46 YIIEFCKAHVEF 57 (121)
Q Consensus 46 kVie~c~~h~~~ 57 (121)
.|+.||.||+-.
T Consensus 36 LIl~ycr~~k~~ 47 (176)
T 3cuq_C 36 LVLSFCRLHKQS 47 (176)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhCee
Confidence 589999999864
No 88
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=30.83 E-value=34 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.039 Sum_probs=18.1
Q ss_pred HHHHHHHHhCCCHHHHHhhcC
Q 042635 72 TETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~f~ 92 (121)
...||+.|+|++.++-..++.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 467899999999999888776
No 89
>3efy_A CIF (cell cycle inhibiting factor); bacteria, virulence factor, type III secretion, E. coli, plasmid; 1.70A {Escherichia coli}
Probab=29.99 E-value=39 Score=24.15 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=53.6
Q ss_pred CCCCCcEEEEeCC---CCeEEecHHHHhhcC---------cCCCcccCCCCChhHHHHHHHHHHhhhcCCCCCchhhhHH
Q 042635 1 MRHSKKISLKRAD---GQLFEVEEPVAMDFE---------IEDTVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEML 68 (121)
Q Consensus 1 m~s~~~i~L~SsD---G~~f~V~~~~a~~S~---------ied~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll 68 (121)
|++.+.+.++-.| |+.|.|+..+...+. |.+++.|= + ++-.|+.+...+|+.-++++
T Consensus 49 l~s~knyV~~VNDgrLGH~fliDiP~~~n~~r~ayiyQSDLG~galp~--l------r~eDWm~~rg~~pisld~l~--- 117 (195)
T 3efy_A 49 MPECKSFVLRVNDGALGHAYIVDIPKGENSCRPAFLYQSDLGEGVTRK--L------RFEDWMTHKALTPILLDDIC--- 117 (195)
T ss_dssp CCTTSEEEEEEEETTTTEEEEEEECSCCSTTCEEEEECCBCSSSSSCC--B------CHHHHHTTGGGSCEEHHHHH---
T ss_pred hhcccCEEEEEcCCCcceeEEEecCCCCCCCcceEEEecccCCccccc--e------eHHHHHhhcCCCCccHHHHH---
Confidence 4567778888777 478999887774333 22244432 2 46799999888776534444
Q ss_pred HHHHHHHHHHHhC-CCHHHHHhhcCCCCCCCH
Q 042635 69 DYWTETLANRIKN-KSVQYVGKFFGIENNFTP 99 (121)
Q Consensus 69 ~~~c~~vA~~ikg-kt~eeiR~~f~I~~d~t~ 99 (121)
+....+-.. -..+.|-++|.|..|..-
T Consensus 118 ----~~F~~lsq~~~~~~~Ia~lfDI~~nV~~ 145 (195)
T 3efy_A 118 ----NYFSCMSQNKTDLEQIATLFDIDGNVKM 145 (195)
T ss_dssp ----HHHHHHHTTCCCHHHHHHHHCTTCCGGG
T ss_pred ----HHHhHhccchhHHHHHHHHhcccccHHH
Confidence 333333332 458899999999888643
No 90
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.91 E-value=50 Score=20.26 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhhc
Q 042635 42 EPLSYIIEFCKAHVE 56 (121)
Q Consensus 42 ~~L~kVie~c~~h~~ 56 (121)
..+.+|++|+..|..
T Consensus 3 ~~i~~~~~~i~~~~~ 17 (107)
T 2k9s_A 3 NRVREACQYISDHLA 17 (107)
T ss_dssp HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 457889999998876
No 91
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=29.38 E-value=41 Score=20.26 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhcCC-CCC-chhhhHHHHH--------HHHHHHHHhCCCHHHHH
Q 042635 45 SYIIEFCKAHVEFS-KQR-SPKQEMLDYW--------TETLANRIKNKSVQYVG 88 (121)
Q Consensus 45 ~kVie~c~~h~~~~-~~~-~~~~~Ll~~~--------c~~vA~~ikgkt~eeiR 88 (121)
+.|-.|+--|.... .++ ++++.++..+ -..++..++||+.+|+-
T Consensus 3 ~yvyA~Lll~~~g~~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elI 56 (70)
T 2lbf_B 3 RYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVI 56 (70)
T ss_dssp CTHHHHHHHHHHTCSSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHH
Confidence 34555666665543 333 6676666543 55678888999998875
No 92
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=29.09 E-value=34 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~ 92 (121)
+=|+-+++..|..-+++|++|.|+++.
T Consensus 71 g~Ld~v~~~kAk~~~~~TaeeyKayy~ 97 (215)
T 1txl_A 71 GKLDPVFQKKADADKTKTFAEIKDYYH 97 (215)
T ss_dssp TTTHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred ccHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 556778898998877899999999863
No 93
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=29.00 E-value=18 Score=22.44 Aligned_cols=26 Identities=19% Similarity=0.477 Sum_probs=19.2
Q ss_pred CcccCCCCChhHHHHHHHHHHhhhcC
Q 042635 32 TVVPLPNVSTEPLSYIIEFCKAHVEF 57 (121)
Q Consensus 32 ~~Ipl~~V~s~~L~kVie~c~~h~~~ 57 (121)
+.+++.++....-.+|++||..|...
T Consensus 39 D~vd~~~~e~~~~Pkvie~Ckk~P~~ 64 (79)
T 2xuv_A 39 DTVTLNETDLTQIPXVIEYCXXNPQX 64 (79)
T ss_dssp SBCCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CccchhhhhhhcccHHHHHHhcCCcc
Confidence 45666666666688999999998653
No 94
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=28.79 E-value=38 Score=19.63 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=14.8
Q ss_pred CCCCCcEEEEeCCCCeEEec
Q 042635 1 MRHSKKISLKRADGQLFEVE 20 (121)
Q Consensus 1 m~s~~~i~L~SsDG~~f~V~ 20 (121)
|++.-.|.+++.+|+.|.++
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~ 20 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYE 20 (79)
T ss_dssp --CCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEE
Confidence 56666789999999988774
No 95
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=28.58 E-value=39 Score=21.93 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCHHHHHhhcCC
Q 042635 72 TETLANRIKNKSVQYVGKFFGI 93 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~f~I 93 (121)
...||+.|+|++.++-..++.-
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~ 38 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY 38 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999999988777653
No 96
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=27.25 E-value=93 Score=17.80 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=19.3
Q ss_pred chhhhHHHHH--------HHHHHHHHhCCCHHHHH
Q 042635 62 SPKQEMLDYW--------TETLANRIKNKSVQYVG 88 (121)
Q Consensus 62 ~~~~~Ll~~~--------c~~vA~~ikgkt~eeiR 88 (121)
++++.++..+ -..++..+.||+.+|+-
T Consensus 20 ~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI 54 (58)
T 3a1y_A 20 ENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVI 54 (58)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHH
Confidence 6676666543 55677888999988874
No 97
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=26.81 E-value=29 Score=22.30 Aligned_cols=14 Identities=14% Similarity=0.014 Sum_probs=12.3
Q ss_pred hCCCHHHHHhhcCC
Q 042635 80 KNKSVQYVGKFFGI 93 (121)
Q Consensus 80 kgkt~eeiR~~f~I 93 (121)
+|.+.+++|++|-+
T Consensus 76 qGTk~e~LrkRFv~ 89 (93)
T 3r15_A 76 QGTKAAALRKRFIP 89 (93)
T ss_dssp TTCCHHHHHHHEEE
T ss_pred ccccHHHHHHhhhh
Confidence 69999999999954
No 98
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=26.40 E-value=18 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|||++||+.++.
T Consensus 134 ~~IA~ev~~Kt~eEV~~Y~~ 153 (304)
T 1ofc_X 134 DNIAKDVEGKTPEEVIEYNA 153 (304)
T ss_dssp HHHTTSSTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHH
Confidence 45888888999999999865
No 99
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=26.15 E-value=46 Score=21.58 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCHHHHHhhcC
Q 042635 72 TETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~f~ 92 (121)
+..||+.|+|++.++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 467899999999998887766
No 100
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.13 E-value=54 Score=17.73 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=14.8
Q ss_pred HHhCCCHHHHHhhcCCC
Q 042635 78 RIKNKSVQYVGKFFGIE 94 (121)
Q Consensus 78 ~ikgkt~eeiR~~f~I~ 94 (121)
...|.|..||-+.+||+
T Consensus 10 ~~~g~s~~eIA~~l~is 26 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHIS 26 (61)
T ss_dssp HHTSCCSHHHHHHTCSC
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 56799999999999986
No 101
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=24.89 E-value=1.4e+02 Score=19.18 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=36.3
Q ss_pred CCCCChhHHHHHHHHHHhhhcCCCCCchhhhHHHHHHH-HHHHHHhCCCHHHHHhhcCCC-CCCC
Q 042635 36 LPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYWTE-TLANRIKNKSVQYVGKFFGIE-NNFT 98 (121)
Q Consensus 36 l~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~c~-~vA~~ikgkt~eeiR~~f~I~-~d~t 98 (121)
..+|+..+-.+|.+|++.|.- +| ..|..+-|++.-=+..++.-+ .+++
T Consensus 15 ~~~iTk~I~~~Ik~~Lk~~~i---------------sQ~~FA~~VL~rsQgtLs~lLr~P~kPW~ 64 (101)
T 1wiz_A 15 SVEVSPDIYQQVRDELKRASV---------------SQAVFARVAFNRTQGLLSEILRKEEDPRT 64 (101)
T ss_dssp SCCCCTTHHHHHHHHHHHHTC---------------CHHHHHHHHHSCCHHHHHHHHHTCCCTTT
T ss_pred hhHhhHHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHhhhHHHHHHcCCCCCHH
Confidence 457899999999999998753 44 448888888877788888777 3543
No 102
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=24.69 E-value=32 Score=19.99 Aligned_cols=16 Identities=19% Similarity=0.277 Sum_probs=13.4
Q ss_pred hCCCHHHHHhhcCCCC
Q 042635 80 KNKSVQYVGKFFGIEN 95 (121)
Q Consensus 80 kgkt~eeiR~~f~I~~ 95 (121)
-|-|.+|||+++...+
T Consensus 25 lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 25 ANISPEEIRKYLLLNK 40 (57)
T ss_dssp TTCCHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHhc
Confidence 4999999999998764
No 103
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=30.01 E-value=16 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCHHHHHhhcC
Q 042635 73 ETLANRIKNKSVQYVGKFFG 92 (121)
Q Consensus 73 ~~vA~~ikgkt~eeiR~~f~ 92 (121)
..||..+.|+|..++|.+|.
T Consensus 39 ~~IA~~l~gRt~~q~k~r~~ 58 (89)
T 2ltp_A 39 SAIARMVGSKTVSQCKNFYF 58 (89)
Confidence 46899999999999999986
No 104
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=23.19 E-value=70 Score=20.96 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=44.6
Q ss_pred CChhHHHHHHHHHHhhhcCCCCCchhhhHHHHH--------HHHHHH-HHhC------CCHHHHHhhc-CCCCCC-CHHH
Q 042635 39 VSTEPLSYIIEFCKAHVEFSKQRSPKQEMLDYW--------TETLAN-RIKN------KSVQYVGKFF-GIENNF-TPKE 101 (121)
Q Consensus 39 V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~~~--------c~~vA~-~ikg------kt~eeiR~~f-~I~~d~-t~eE 101 (121)
-....|..|+.|+..-+-...+..+.-.||-+. -+.||. +++. -+..+|+.+. .|.++. ++++
T Consensus 8 ~~p~~l~siv~WLRaGYPeGVP~~Dy~PLlALL~R~Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eD 87 (107)
T 3ol3_A 8 TTTTFMDNVLGWLHKGYPEGVPPKDYFALLALLKRSLTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEE 87 (107)
T ss_dssp -CHHHHHHHHHHHHHHCTTCBCGGGHHHHHHHHTCCCCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHH
T ss_pred cCcHHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHH
Confidence 345689999999999887777765544444332 223333 2221 3457888763 355544 5666
Q ss_pred HH-HHh---hcccccCC
Q 042635 102 EV-ART---QYEWAFEG 114 (121)
Q Consensus 102 e~-ir~---e~~w~~~~ 114 (121)
-+ ++. ..-|-+.+
T Consensus 88 i~RV~arLaa~GWPl~~ 104 (107)
T 3ol3_A 88 INQVAARLASVGWPLAV 104 (107)
T ss_dssp HHHHHHHHHTTTCCBSS
T ss_pred HHHHHHHHHhcCCCCCC
Confidence 66 776 35665543
No 105
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=23.00 E-value=56 Score=17.86 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHHHh--CCCHHHHHhhc
Q 042635 73 ETLANRIK--NKSVQYVGKFF 91 (121)
Q Consensus 73 ~~vA~~ik--gkt~eeiR~~f 91 (121)
..||..+. |.|+.++|..+
T Consensus 26 ~~Ia~~~~~~~Rt~~qcr~Rw 46 (53)
T 1w0t_A 26 SKILLHYKFNNRTSVMLKDRW 46 (53)
T ss_dssp HHHHHHSCCSSCCHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHH
Confidence 35788888 89999998875
No 106
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=22.96 E-value=84 Score=17.43 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCHHHHHhh
Q 042635 72 TETLANRIKNKSVQYVGKF 90 (121)
Q Consensus 72 c~~vA~~ikgkt~eeiR~~ 90 (121)
.+.++.+|+.+.|++++..
T Consensus 10 Sk~L~~Ll~s~~P~Dlq~A 28 (45)
T 1j2j_B 10 SKMLARLLKSSHPEDLRAA 28 (45)
T ss_dssp HHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHcCChhhHHHH
Confidence 5678999999999988754
No 107
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=22.08 E-value=99 Score=22.06 Aligned_cols=42 Identities=5% Similarity=0.046 Sum_probs=27.1
Q ss_pred chhhhHHHHHHHHHHHHHhC-CCHHHHHhhcCCCCCCCHHHHH
Q 042635 62 SPKQEMLDYWTETLANRIKN-KSVQYVGKFFGIENNFTPKEEV 103 (121)
Q Consensus 62 ~~~~~Ll~~~c~~vA~~ikg-kt~eeiR~~f~I~~d~t~eEe~ 103 (121)
.++-..|.+.-.+|+.+++- .-++++-+.|+++++++-..-.
T Consensus 28 ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~ 70 (192)
T 1zx4_A 28 KDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYK 70 (192)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHH
Confidence 45556666666777777664 4477777777777777654333
No 108
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=21.99 E-value=68 Score=23.94 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=54.6
Q ss_pred CCCCCcEEEEeCC---CCeEEecHHHHhhcC--------cCCCcccCCCCChhHHHHHHHHHHhhhcCCCCCchhhhHHH
Q 042635 1 MRHSKKISLKRAD---GQLFEVEEPVAMDFE--------IEDTVVPLPNVSTEPLSYIIEFCKAHVEFSKQRSPKQEMLD 69 (121)
Q Consensus 1 m~s~~~i~L~SsD---G~~f~V~~~~a~~S~--------ied~~Ipl~~V~s~~L~kVie~c~~h~~~~~~~~~~~~Ll~ 69 (121)
|+|.+.+.++-.| |+.|.|+..+..++. |.+++.|= + +|-.|+.+...+|+. |+
T Consensus 117 L~s~kNyV~~VNDgrLGH~flIDiPa~~~~r~ayiyQSDLG~Galp~--l------r~eDWm~~rg~~pIs-------Ld 181 (261)
T 4fbj_A 117 LSSAKNYVALVNDRRLGHMFLIDIPSNDQETVGYIYQSDLGQGALPP--L------KIADWLNSRGKDAVS-------LN 181 (261)
T ss_dssp SCTTCEEEEEEEETTTTEEEEEEECCCSSCCEEEEECCBCSCSSSCC--B------CHHHHHHHGGGSEEE-------HH
T ss_pred hhcccCEEEEEcCCCcceeEEEecCCCCCCcceEEEecccCCCCCcc--e------eHHHHHhhcCCCCcc-------HH
Confidence 4567778888777 578999988887766 22244442 2 467999998877764 33
Q ss_pred HHHHHHHHHHhCCC----HHHHHhhcCCCCCCC
Q 042635 70 YWTETLANRIKNKS----VQYVGKFFGIENNFT 98 (121)
Q Consensus 70 ~~c~~vA~~ikgkt----~eeiR~~f~I~~d~t 98 (121)
-.|+.+++.+.+.+ .+.|-++|.|..|..
T Consensus 182 ~l~~~ls~~F~~ms~d~~~~lIA~ifdIdkdv~ 214 (261)
T 4fbj_A 182 KLKKLLSREFNLLSDDEKRALISETLDIHKDVS 214 (261)
T ss_dssp HHHHHHSGGGGGSCHHHHHHHHHHHHCTTCCGG
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHcccCCHH
Confidence 34555555555544 556777788877753
No 109
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.89 E-value=68 Score=19.09 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=17.8
Q ss_pred CCCCChhHHHHHHHHHHhhhc
Q 042635 36 LPNVSTEPLSYIIEFCKAHVE 56 (121)
Q Consensus 36 l~~V~s~~L~kVie~c~~h~~ 56 (121)
+|+++..+++.|++=|..+.+
T Consensus 29 FP~lD~~vI~~vL~a~~G~vd 49 (67)
T 2dhy_A 29 FPNMDYDIIECVLRANSGAVD 49 (67)
T ss_dssp CSSSCHHHHHHHHHHHTSCHH
T ss_pred CCCCCHHHHHHHHHHcCCCHH
Confidence 799999999999988876644
No 110
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=21.65 E-value=1.1e+02 Score=21.62 Aligned_cols=20 Identities=10% Similarity=0.106 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHhhhcCCC
Q 042635 40 STEPLSYIIEFCKAHVEFSK 59 (121)
Q Consensus 40 ~s~~L~kVie~c~~h~~~~~ 59 (121)
....+.++++|...|...+.
T Consensus 167 ~~~~~~~~~~~i~~~~~~~~ 186 (276)
T 3gbg_A 167 DLDAMEKISCLVKSDITRNW 186 (276)
T ss_dssp TTCHHHHHHHHHHHTTTSCC
T ss_pred hHHHHHHHHHHHHHhhcCCC
Confidence 45677888888887776643
No 111
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=21.55 E-value=90 Score=20.57 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHhhcCCC
Q 042635 66 EMLDYWTETLANRIKNKSVQYVGKFFGIE 94 (121)
Q Consensus 66 ~Ll~~~c~~vA~~ikgkt~eeiR~~f~I~ 94 (121)
.+.+..|..+| .|.|..+|.+.+||+
T Consensus 16 e~~e~I~~~i~---~G~sl~~i~~~~~~p 41 (140)
T 4dyq_A 16 EVADDICSLLS---SGESLLKVCKRPGMP 41 (140)
T ss_dssp THHHHHHHHHH---TTCCHHHHHTSTTCC
T ss_pred HHHHHHHHHHH---CCCcHHHHHhcCCCC
Confidence 45666677665 699999999999996
No 112
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.53 E-value=80 Score=17.55 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=14.1
Q ss_pred HHhCCCHHHHHhhcCCC
Q 042635 78 RIKNKSVQYVGKFFGIE 94 (121)
Q Consensus 78 ~ikgkt~eeiR~~f~I~ 94 (121)
...|.|..||-+.+|++
T Consensus 23 ~~~g~s~~eIA~~l~is 39 (74)
T 1fse_A 23 LVQDKTTKEIASELFIS 39 (74)
T ss_dssp HTTTCCHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCCC
Confidence 45788999999999986
No 113
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=20.93 E-value=32 Score=19.36 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHhCCCHHHHHhhcCCCCC
Q 042635 75 LANRIKNKSVQYVGKFFGIENN 96 (121)
Q Consensus 75 vA~~ikgkt~eeiR~~f~I~~d 96 (121)
++.=.+|.|.+||++.+|.+.+
T Consensus 30 l~~GA~g~T~~ql~~~L~~~~~ 51 (55)
T 1m93_A 30 LYYGANGSTAEQLSKYVEKEAD 51 (55)
T ss_dssp HHHHCCHHHHHHHHTTC-----
T ss_pred HHhhccchHHHHHHHHhCCCcc
Confidence 3344468999999999998754
No 114
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.91 E-value=80 Score=18.60 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=16.2
Q ss_pred HHHHHhCCCHHHHHhhcCCC
Q 042635 75 LANRIKNKSVQYVGKFFGIE 94 (121)
Q Consensus 75 vA~~ikgkt~eeiR~~f~I~ 94 (121)
+.-.+.|+|..||-+.+||+
T Consensus 30 l~l~~~g~s~~eIA~~l~is 49 (82)
T 1je8_A 30 LKLIAQGLPNKMIARRLDIT 49 (82)
T ss_dssp HHHHTTTCCHHHHHHHHTSC
T ss_pred HHHHHcCCCHHHHHHHHCcC
Confidence 33346899999999999987
Done!