Query 042636
Match_columns 219
No_of_seqs 108 out of 2100
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:08:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 4.4E-16 9.5E-21 141.8 6.1 183 4-190 156-367 (968)
2 PLN00113 leucine-rich repeat r 99.6 5.6E-16 1.2E-20 141.1 6.5 128 9-139 137-268 (968)
3 PLN03210 Resistant to P. syrin 99.4 6.7E-13 1.4E-17 122.6 7.3 42 154-195 868-909 (1153)
4 PLN03210 Resistant to P. syrin 99.3 3.4E-12 7.5E-17 117.9 8.6 88 2-94 624-713 (1153)
5 KOG0444 Cytoskeletal regulator 99.3 8E-14 1.7E-18 116.6 -2.7 160 3-166 23-184 (1255)
6 KOG0617 Ras suppressor protein 99.3 5.5E-14 1.2E-18 100.0 -4.6 134 2-139 46-181 (264)
7 KOG0472 Leucine-rich repeat pr 99.2 7.7E-14 1.7E-18 110.9 -8.8 193 2-205 81-277 (565)
8 KOG0444 Cytoskeletal regulator 99.2 9.2E-13 2E-17 110.4 -3.5 182 2-188 45-254 (1255)
9 KOG4194 Membrane glycoprotein 99.1 4.4E-11 9.5E-16 99.6 1.2 152 9-164 99-254 (873)
10 KOG0617 Ras suppressor protein 99.0 3.3E-12 7.2E-17 91.0 -5.2 147 12-188 33-182 (264)
11 KOG4194 Membrane glycoprotein 99.0 1.8E-10 3.9E-15 96.0 1.7 168 15-189 81-255 (873)
12 cd00116 LRR_RI Leucine-rich re 98.9 1.6E-10 3.6E-15 92.5 -1.8 161 5-166 44-232 (319)
13 KOG0618 Serine/threonine phosp 98.9 2.4E-10 5.3E-15 99.4 -1.4 186 2-192 254-489 (1081)
14 KOG3207 Beta-tubulin folding c 98.8 9.2E-10 2E-14 88.7 1.4 177 10-188 119-335 (505)
15 KOG0472 Leucine-rich repeat pr 98.8 3.3E-11 7.2E-16 96.2 -7.7 100 86-190 207-308 (565)
16 KOG2120 SCF ubiquitin ligase, 98.8 5.1E-10 1.1E-14 86.4 -1.7 157 9-165 207-373 (419)
17 KOG0618 Serine/threonine phosp 98.8 5.5E-10 1.2E-14 97.3 -1.9 179 2-189 300-507 (1081)
18 cd00116 LRR_RI Leucine-rich re 98.7 1.2E-09 2.5E-14 87.7 -1.0 14 107-120 193-206 (319)
19 KOG4658 Apoptotic ATPase [Sign 98.7 3.6E-08 7.7E-13 88.5 8.1 66 2-68 585-651 (889)
20 PRK15370 E3 ubiquitin-protein 98.7 2.2E-08 4.8E-13 88.4 6.0 41 155-199 346-386 (754)
21 PF14580 LRR_9: Leucine-rich r 98.6 8.6E-09 1.9E-13 75.2 0.1 102 31-139 16-121 (175)
22 PRK15387 E3 ubiquitin-protein 98.6 1.1E-07 2.4E-12 83.9 6.9 24 176-199 442-465 (788)
23 KOG4658 Apoptotic ATPase [Sign 98.6 3E-08 6.6E-13 88.9 2.6 195 4-203 562-794 (889)
24 PRK15370 E3 ubiquitin-protein 98.6 8.3E-08 1.8E-12 84.8 5.1 172 2-199 191-365 (754)
25 KOG1259 Nischarin, modulator o 98.5 1.7E-08 3.7E-13 78.3 -0.9 124 35-166 285-410 (490)
26 PF14580 LRR_9: Leucine-rich r 98.5 2E-08 4.4E-13 73.2 -1.0 130 56-190 16-151 (175)
27 PRK15387 E3 ubiquitin-protein 98.3 1.6E-06 3.5E-11 76.7 7.5 36 2-42 214-250 (788)
28 KOG1259 Nischarin, modulator o 98.3 5.9E-08 1.3E-12 75.4 -1.4 123 10-139 282-407 (490)
29 KOG4237 Extracellular matrix p 98.3 1.3E-07 2.9E-12 75.7 -0.0 83 103-190 270-357 (498)
30 KOG2120 SCF ubiquitin ligase, 98.3 4.3E-08 9.2E-13 76.0 -3.0 177 13-190 186-374 (419)
31 KOG3207 Beta-tubulin folding c 98.2 2.3E-07 5E-12 75.2 -1.1 138 26-166 113-257 (505)
32 COG4886 Leucine-rich repeat (L 98.2 1.1E-06 2.3E-11 72.8 2.7 175 9-192 113-290 (394)
33 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 51.9 2.6 54 86-139 2-57 (61)
34 COG4886 Leucine-rich repeat (L 98.1 2.9E-06 6.4E-11 70.2 4.2 156 1-164 128-286 (394)
35 KOG0532 Leucine-rich repeat (L 98.0 1.4E-07 3E-12 78.8 -4.9 164 17-191 80-246 (722)
36 KOG1909 Ran GTPase-activating 98.0 1.1E-06 2.4E-11 69.4 -0.0 89 102-190 208-309 (382)
37 PF13855 LRR_8: Leucine rich r 97.9 6.7E-06 1.5E-10 49.2 2.5 57 107-165 1-59 (61)
38 KOG0532 Leucine-rich repeat (L 97.9 7.9E-07 1.7E-11 74.5 -2.3 116 2-123 111-250 (722)
39 KOG3665 ZYG-1-like serine/thre 97.9 1.6E-05 3.5E-10 70.0 4.8 104 34-139 122-228 (699)
40 KOG2982 Uncharacterized conser 97.9 3.2E-05 7E-10 60.3 5.4 85 32-118 69-157 (418)
41 KOG3665 ZYG-1-like serine/thre 97.8 9.1E-06 2E-10 71.5 2.1 52 86-139 149-203 (699)
42 PLN03150 hypothetical protein; 97.8 1.8E-05 3.8E-10 69.4 3.1 102 14-118 420-526 (623)
43 KOG4237 Extracellular matrix p 97.7 9.3E-07 2E-11 71.0 -5.2 115 23-139 79-196 (498)
44 PLN03150 hypothetical protein; 97.6 0.00012 2.7E-09 64.2 5.7 79 87-166 420-501 (623)
45 KOG1909 Ran GTPase-activating 97.6 2.8E-05 6.1E-10 61.6 1.4 157 32-190 90-281 (382)
46 PRK15386 type III secretion pr 97.4 0.00066 1.4E-08 56.0 7.3 55 55-117 48-104 (426)
47 PF12799 LRR_4: Leucine Rich r 97.3 0.0002 4.3E-09 39.7 2.5 36 86-121 2-38 (44)
48 KOG2982 Uncharacterized conser 97.2 8.8E-05 1.9E-09 58.0 0.1 65 105-169 197-263 (418)
49 PF12799 LRR_4: Leucine Rich r 97.1 0.00039 8.4E-09 38.6 2.1 37 34-72 1-37 (44)
50 KOG1859 Leucine-rich repeat pr 97.0 3.8E-05 8.3E-10 66.6 -3.4 110 23-139 176-287 (1096)
51 COG5238 RNA1 Ran GTPase-activa 97.0 0.0004 8.6E-09 53.8 2.0 182 8-189 88-313 (388)
52 KOG1644 U2-associated snRNP A' 96.9 0.0014 3E-08 48.5 3.8 76 60-139 43-121 (233)
53 KOG0531 Protein phosphatase 1, 96.8 0.00021 4.6E-09 59.7 -1.2 102 30-139 91-194 (414)
54 KOG1859 Leucine-rich repeat pr 96.6 8E-05 1.7E-09 64.7 -4.9 106 55-166 183-290 (1096)
55 KOG1644 U2-associated snRNP A' 95.9 0.02 4.2E-07 42.6 5.0 63 104-166 61-124 (233)
56 KOG2123 Uncharacterized conser 95.9 0.00027 5.8E-09 54.8 -4.9 77 58-139 18-96 (388)
57 KOG2123 Uncharacterized conser 95.5 0.00045 9.8E-09 53.6 -5.0 99 33-138 18-124 (388)
58 KOG4341 F-box protein containi 95.4 0.0029 6.4E-08 51.7 -0.9 89 104-192 317-414 (483)
59 KOG4341 F-box protein containi 95.3 0.001 2.2E-08 54.4 -3.6 194 9-205 161-396 (483)
60 KOG0531 Protein phosphatase 1, 95.2 0.0075 1.6E-07 50.4 0.9 82 52-139 88-170 (414)
61 KOG4579 Leucine-rich repeat (L 94.9 0.0042 9E-08 43.4 -1.2 87 50-139 44-131 (177)
62 KOG2739 Leucine-rich acidic nu 94.8 0.011 2.3E-07 45.5 0.7 81 56-138 62-150 (260)
63 KOG1947 Leucine rich repeat pr 94.6 0.0086 1.9E-07 50.6 -0.4 15 178-192 426-440 (482)
64 KOG3864 Uncharacterized conser 94.0 0.0022 4.8E-08 47.5 -4.3 86 108-193 102-190 (221)
65 KOG1947 Leucine rich repeat pr 94.0 0.007 1.5E-07 51.2 -2.1 109 11-119 187-307 (482)
66 KOG2739 Leucine-rich acidic nu 93.9 0.071 1.5E-06 41.1 3.3 103 86-190 44-154 (260)
67 KOG4579 Leucine-rich repeat (L 93.5 0.011 2.4E-07 41.3 -1.4 53 86-139 54-108 (177)
68 PRK15386 type III secretion pr 92.9 0.17 3.8E-06 42.1 4.4 50 86-140 53-103 (426)
69 PF13504 LRR_7: Leucine rich r 92.8 0.074 1.6E-06 22.8 1.2 17 179-196 1-17 (17)
70 COG5238 RNA1 Ran GTPase-activa 92.5 0.091 2E-06 41.1 2.2 84 107-190 185-283 (388)
71 KOG3864 Uncharacterized conser 91.9 0.043 9.3E-07 40.8 -0.2 34 106-139 150-184 (221)
72 PF00560 LRR_1: Leucine Rich R 91.2 0.081 1.8E-06 24.3 0.4 20 180-200 1-20 (22)
73 smart00367 LRR_CC Leucine-rich 90.0 0.3 6.5E-06 23.3 1.9 16 178-193 1-16 (26)
74 PF13306 LRR_5: Leucine rich r 89.5 0.15 3.3E-06 34.8 0.8 79 55-138 31-110 (129)
75 PF13306 LRR_5: Leucine rich r 87.0 1.4 2.9E-05 29.9 4.3 52 86-138 36-88 (129)
76 smart00370 LRR Leucine-rich re 86.0 0.44 9.5E-06 22.6 1.0 19 107-125 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 86.0 0.44 9.5E-06 22.6 1.0 19 107-125 2-20 (26)
78 PF13516 LRR_6: Leucine Rich r 67.9 2.4 5.3E-05 19.5 0.6 10 13-22 3-12 (24)
79 smart00368 LRR_RI Leucine rich 53.9 6.3 0.00014 19.0 0.6 15 107-121 2-16 (28)
80 smart00365 LRR_SD22 Leucine-ri 52.5 8.7 0.00019 18.4 1.0 15 107-121 2-16 (26)
81 KOG4308 LRR-containing protein 40.7 1.2 2.7E-05 38.1 -5.2 16 105-120 288-303 (478)
82 smart00364 LRR_BAC Leucine-ric 34.3 24 0.00051 17.0 0.9 16 107-122 2-17 (26)
83 KOG3763 mRNA export factor TAP 31.5 14 0.0003 32.2 -0.3 81 57-137 216-307 (585)
84 KOG0473 Leucine-rich repeat pr 29.4 3.2 7E-05 32.0 -3.9 38 30-69 61-98 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=4.4e-16 Score=141.83 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=81.7
Q ss_pred cCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHH------------------------Hhc
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCAL------------------------IAN 57 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------------------l~~ 57 (219)
+|..++++++|++|++.++ ....|..++++++|++|+++. +...+.++.. +++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS-NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC-CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 4455555555555555544 334444555555555555542 2222233333 444
Q ss_pred cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccce
Q 042636 58 LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLE 135 (219)
Q Consensus 58 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 135 (219)
+++|++|++++|......+ ..+...+ +|++|+++. .+. .+|.++..+++|+.|++++|.+.+..+..+.++++|+.
T Consensus 235 l~~L~~L~L~~n~l~~~~p-~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIP-SSLGNLK-NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred CCCCCEEECcCceeccccC-hhHhCCC-CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 4444444444443322111 1222233 455555544 222 24444555555555555555554433344455555555
Q ss_pred eeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636 136 LRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 136 L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
|+++ +...+ .++.....+++|+.|++.++...+.++...+.+++|+.|++.++.
T Consensus 313 L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 313 LHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 5554 22221 122222345556666555443222232223344555555555543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.62 E-value=5.6e-16 Score=141.12 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=97.5
Q ss_pred cccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 9 GSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 9 ~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
+.+.+|++|++.++ ....|..++++++|++|+++. +...+..+..++++++|++|++++|......+ ..+..+. +
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~-~ 213 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGG-NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMK-S 213 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECcc-CcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcC-C
Confidence 46889999999888 567888899999999999983 44445667788999999999999987654332 3444455 8
Q ss_pred ccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 87 LQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 87 L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
|+.|+++. .+. .+|..+..+++|++|++++|.+.+..+..++.+++|+.|+++
T Consensus 214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 88888876 444 477777788888888888887766555566777777777776
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=6.7e-13 Score=122.56 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=22.7
Q ss_pred CcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcc
Q 042636 154 FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMY 195 (219)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 195 (219)
+++|+.|++.+|+.+..++.....+++|+.+.+.+|+.+..+
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 445555555555555555444445555566666666555443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.33 E-value=3.4e-12 Score=117.90 Aligned_cols=88 Identities=24% Similarity=0.284 Sum_probs=51.8
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++..+++|++|++.++ ...+| +++.+++|++|++. .+.....++..+.++++|+.|++++|......+. .
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~-~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~-~ 700 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS-DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT-G 700 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec-CCCCccccchhhhccCCCCEEeCCCCCCcCccCC-c
Confidence 345666667777777777654 23333 46667777777777 2444566667777777788887776644333221 1
Q ss_pred CCCcccCccEEEecc
Q 042636 80 LSSPPQYLQRLYLTG 94 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~ 94 (219)
.... +|+.|.+++
T Consensus 701 -i~l~-sL~~L~Lsg 713 (1153)
T PLN03210 701 -INLK-SLYRLNLSG 713 (1153)
T ss_pred -CCCC-CCCEEeCCC
Confidence 1222 555555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=8e-14 Score=116.63 Aligned_cols=160 Identities=20% Similarity=0.189 Sum_probs=125.7
Q ss_pred ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636 3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS 81 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (219)
++|..+..|++++.|.+... ...+|++++.+.+|++|.+. .+....+...++.++.|+.+.+..|+.........+.
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~--HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF 100 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMA--HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF 100 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhh--hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc
Confidence 57899999999999998877 78899999999999999988 4566677788899999999999988775444345666
Q ss_pred CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCccccee
Q 042636 82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQIL 160 (219)
Q Consensus 82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 160 (219)
.+. .|+.|++++ .+.++|..+...+++-.|.+++|+|...+-..+.++..|-.|+++++.. +.++-....+..|++|
T Consensus 101 ~l~-dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 101 RLK-DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccc-cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhh
Confidence 666 899999998 8889999999999999999999999988777778888888888873321 2233333344555566
Q ss_pred eecccC
Q 042636 161 TLFDFV 166 (219)
Q Consensus 161 ~l~~~~ 166 (219)
.+++++
T Consensus 179 ~Ls~NP 184 (1255)
T KOG0444|consen 179 KLSNNP 184 (1255)
T ss_pred hcCCCh
Confidence 555443
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=5.5e-14 Score=99.99 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=97.6
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
..+|++|..+.+|+.|++.++ ..+.|.++..++.||.|++. -+-....+..++.++-|++||+.+|+.++..-...+
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg--mnrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG--MNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc--hhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 467888888888888888777 77888888888888888777 333444556677778888888888877654433444
Q ss_pred CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
..+. .|+.|++.+ .++-+|+.++++.+|+.|.+.+|.+-..+ ..++.+.+|++|.++
T Consensus 124 f~m~-tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp-keig~lt~lrelhiq 181 (264)
T KOG0617|consen 124 FYMT-TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-KEIGDLTRLRELHIQ 181 (264)
T ss_pred hHHH-HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc-HHHHHHHHHHHHhcc
Confidence 4455 677778876 77778888888888888888887765543 445667777777765
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.19 E-value=7.7e-14 Score=110.93 Aligned_cols=193 Identities=18% Similarity=0.140 Sum_probs=145.4
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
.++|.+++++..++.++++.+ ..+.|++++.+.++++++.+ .+...+.+..++++..|+.++-.+|+..+.. +++
T Consensus 81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s--~n~~~el~~~i~~~~~l~dl~~~~N~i~slp--~~~ 156 (565)
T KOG0472|consen 81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS--SNELKELPDSIGRLLDLEDLDATNNQISSLP--EDM 156 (565)
T ss_pred hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc--ccceeecCchHHHHhhhhhhhccccccccCc--hHH
Confidence 467888888888888887766 77888888889999999888 5666777778888888888888887765542 333
Q ss_pred CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccc
Q 042636 81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQ 158 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~ 158 (219)
.... ++..+.+.+ .+..+|+..-.++.|+++++..|.+... +..++.+.+|+.|++. +.. ..++ ..+++..|.
T Consensus 157 ~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tl-P~~lg~l~~L~~LyL~~Nki--~~lP-ef~gcs~L~ 231 (565)
T KOG0472|consen 157 VNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETL-PPELGGLESLELLYLRRNKI--RFLP-EFPGCSLLK 231 (565)
T ss_pred HHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcC-ChhhcchhhhHHHHhhhccc--ccCC-CCCccHHHH
Confidence 3333 777788877 7777887777788999999988777665 4567889999999997 333 1123 456778888
Q ss_pred eeeecccCCcceEEEcCC-cccccceeeeecCCCCCcchhHHhhhhhh
Q 042636 159 ILTLFDFVAVKSVIIEKG-AMPDIRELGIGPFPLWSMYIFLTDHILDQ 205 (219)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~~~~l~~~ 205 (219)
+++++. +.++.++.+.+ +++++..|++++ .+++++|.++--+++.
T Consensus 232 Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL 277 (565)
T KOG0472|consen 232 ELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSL 277 (565)
T ss_pred HHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhh
Confidence 888884 44677766654 789999999998 4788999988777654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=9.2e-13 Score=110.40 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=99.5
Q ss_pred cccCCcccccccccccccccc-C-------------------------hHhHHHHhcccccceeeeeeCCCChhHHHHHH
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-D-------------------------SQVLKELMKLRQLRKLGIRPKNGNGKDVCALI 55 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~-------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 55 (219)
.++|++++.+.+|+.|.+.-+ . ..+|+++-++..|..|+++ .+...+.+..+
T Consensus 45 ~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS--hNqL~EvP~~L 122 (1255)
T KOG0444|consen 45 EQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS--HNQLREVPTNL 122 (1255)
T ss_pred hhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc--hhhhhhcchhh
Confidence 356777776666666655433 2 2344444455556666665 34555666666
Q ss_pred hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccc
Q 042636 56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL 134 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 134 (219)
.+-+++-+|++++|+...... +-+.... .|-.|+++. .++.+|+.+..+.+|++|++++|.+.......+..+.+|+
T Consensus 123 E~AKn~iVLNLS~N~IetIPn-~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPN-SLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS 200 (1255)
T ss_pred hhhcCcEEEEcccCccccCCc-hHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence 666677777777765533321 1112222 455666766 6777888888888888888888876554444444555555
Q ss_pred eeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeec
Q 042636 135 ELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGP 188 (219)
Q Consensus 135 ~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 188 (219)
.|.++ .......++....++.+|..+++++ +++...+-..+.+++|..|++++
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc
Confidence 55555 3333333443344445555555552 22333333333344444444444
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.05 E-value=4.4e-11 Score=99.57 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=83.6
Q ss_pred cccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
.++.+||++++.++ ...+|...+...+|++|++.. +....--.++++.++.||.||++.|..+.. +.++++... ++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i-~~~sfp~~~-ni 175 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEI-PKPSFPAKV-NI 175 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcc-cCCCCCCCC-Cc
Confidence 44445555555444 333443333334455555552 111122234455666677777777544332 223444333 78
Q ss_pred cEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 88 QRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 88 ~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
++|+++. .++.+- ..+..+.+|..|.++.|+++..+...|.++|+|+.|++. +.+.-. -+....++++|+.|.+..
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-hhhhhcCchhhhhhhhhh
Confidence 8888776 555432 345666777888888888877777777778888888875 332110 022334566677666654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.03 E-value=3.3e-12 Score=91.03 Aligned_cols=147 Identities=24% Similarity=0.313 Sum_probs=65.5
Q ss_pred ccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEE
Q 042636 12 MDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRL 90 (219)
Q Consensus 12 ~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 90 (219)
.+...|.++.+ ...+|+.++.+.+|+.|+++ ++..++++.+++.+++|+.|+++-|.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~--nnqie~lp~~issl~klr~lnvgmnr-------------------- 90 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLS--NNQIEELPTSISSLPKLRILNVGMNR-------------------- 90 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcc--cchhhhcChhhhhchhhhheecchhh--------------------
Confidence 33333443333 34444445555555555555 34444555555555555555544332
Q ss_pred EecccCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCc
Q 042636 91 YLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAV 168 (219)
Q Consensus 91 ~l~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 168 (219)
+..+|..++.++-|+.||+++|.+.+.. +..|-.+..|+.|++. +.+ +.++-..+.+.+||.|.+.++. +
T Consensus 91 -----l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf--e~lp~dvg~lt~lqil~lrdnd-l 162 (264)
T KOG0617|consen 91 -----LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF--EILPPDVGKLTNLQILSLRDND-L 162 (264)
T ss_pred -----hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc--ccCChhhhhhcceeEEeeccCc-h
Confidence 2334444555555555555555444322 2233344445555554 222 1122233444455555544322 2
Q ss_pred ceEEEcCCcccccceeeeec
Q 042636 169 KSVIIEKGAMPDIRELGIGP 188 (219)
Q Consensus 169 ~~~~~~~~~~p~L~~L~l~~ 188 (219)
-.++-+.|.+.+|++|++.+
T Consensus 163 l~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhCcHHHHHHHHHHHHhccc
Confidence 23333344455555555554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.97 E-value=1.8e-10 Score=96.02 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=119.0
Q ss_pred cccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEe
Q 042636 15 QKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYL 92 (219)
Q Consensus 15 ~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 92 (219)
|+|+++++ ...-+..+.+++||+++++. .+....++.......+|+.|++.+|...+.. .+.+...+ .|+.|++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~--~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~-alrslDL 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLN--KNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALP-ALRSLDL 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeec--cchhhhcccccccccceeEEeeecccccccc-HHHHHhHh-hhhhhhh
Confidence 45888887 44556678899999999998 5666777776677788999999997664433 35555566 8999999
Q ss_pred cc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE-EccCCCcccceeeecccCCc
Q 042636 93 TG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH-FEAGWFPKLQILTLFDFVAV 168 (219)
Q Consensus 93 ~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 168 (219)
+. .+.++|. .+..-.++++|++++|+|.......|..+.+|..|.++ +... . ++ .....+|+|+.|++..+. +
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-t-Lp~r~Fk~L~~L~~LdLnrN~-i 233 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-T-LPQRSFKRLPKLESLDLNRNR-I 233 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-c-cCHHHhhhcchhhhhhccccc-e
Confidence 98 6666653 34455789999999999998777888999999999998 3332 1 22 223347889999887532 3
Q ss_pred ceEE-EcCCcccccceeeeecC
Q 042636 169 KSVI-IEKGAMPDIRELGIGPF 189 (219)
Q Consensus 169 ~~~~-~~~~~~p~L~~L~l~~~ 189 (219)
+... .....+|+|+.|.+..+
T Consensus 234 rive~ltFqgL~Sl~nlklqrN 255 (873)
T KOG4194|consen 234 RIVEGLTFQGLPSLQNLKLQRN 255 (873)
T ss_pred eeehhhhhcCchhhhhhhhhhc
Confidence 3321 12234677777666653
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=1.6e-10 Score=92.55 Aligned_cols=161 Identities=21% Similarity=0.222 Sum_probs=77.2
Q ss_pred CCcccccccccccccccc--C------hHhHHHHhcccccceeeeeeCCCChhHHHHHHhcc---CCCCeEEEEecCCCc
Q 042636 5 HRGLGSLMDLQKLSIIEA--D------SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANL---ENLESLTVLMASKDE 73 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~ 73 (219)
+..+...++++++++.++ . ..++..++++++|++|+++. +.........+..+ ++|++|++++|....
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD-NALGPDGCGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC-CCCChhHHHHHHHHhccCcccEEEeeCCccch
Confidence 333444555666665544 2 22344556666777777763 22222222233333 337777777765432
Q ss_pred cc-c--cccCCCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCCCc----cccCCCccceeeec-
Q 042636 74 IL-D--LQSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDPLR----VPHALPNLLELRLG- 139 (219)
Q Consensus 74 ~~-~--~~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~- 139 (219)
.. . ...+...+.+|+.|++++ .++. ++..+..+.+|++|++++|.+.+.... .+...++|++|+++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 11 1 122222312677777765 4431 233344556677777776666542211 23344567777776
Q ss_pred cccCCceE---EEccCCCcccceeeecccC
Q 042636 140 GTYNYKLF---HFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 140 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 166 (219)
+...+... ......+++|++|++.++.
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 22221111 1112235667777666543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.86 E-value=2.4e-10 Score=99.40 Aligned_cols=186 Identities=19% Similarity=0.274 Sum_probs=119.5
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
..+|++++.+.+|+.++...+ ...+|..+..+++|+.|.+. .+..+.++..++++++|++|++..|......+ ..+
T Consensus 254 ~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~--~nel~yip~~le~~~sL~tLdL~~N~L~~lp~-~~l 330 (1081)
T KOG0618|consen 254 SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA--YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPD-NFL 330 (1081)
T ss_pred hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh--hhhhhhCCCcccccceeeeeeehhccccccch-HHH
Confidence 357878888888888887776 67777777778888888776 34445555556778888888887765533221 000
Q ss_pred CCccc------------------------CccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 81 SSPPQ------------------------YLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 81 ~~~~~------------------------~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
..... .|+.|++.. .+++ +| .+..+.+||.|++++|++...+...+.+++.|
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHh
Confidence 00010 233333333 2322 22 45677889999999998887777778888888
Q ss_pred ceeeec-cccCC------------------ceE-EE-ccCCCcccceeeecccCCcceEEEcCCcc-cccceeeeecCCC
Q 042636 134 LELRLG-GTYNY------------------KLF-HF-EAGWFPKLQILTLFDFVAVKSVIIEKGAM-PDIRELGIGPFPL 191 (219)
Q Consensus 134 ~~L~l~-~~~~~------------------~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~~ 191 (219)
++|.++ +..+. +.+ .+ ....+++|+.++++ ++++.....+.... |+|+.|++.++.+
T Consensus 410 eeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 410 EELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 888887 32211 111 01 12346788888888 45577666655555 7899999999875
Q ss_pred C
Q 042636 192 W 192 (219)
Q Consensus 192 l 192 (219)
+
T Consensus 489 l 489 (1081)
T KOG0618|consen 489 L 489 (1081)
T ss_pred c
Confidence 4
No 14
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=9.2e-10 Score=88.72 Aligned_cols=177 Identities=18% Similarity=0.129 Sum_probs=96.8
Q ss_pred cccccccccccccChHhH---HHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 10 SLMDLQKLSIIEADSQVL---KELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 10 ~l~~L~~L~~~~~~~~~~---~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
++.+|++..+-++..+.+ .....++++|.|+++. ....+..+.....++++|+.|+++.|......+. ......+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhh
Confidence 344555555444422222 3567799999999997 4556677777788899999999998866433221 0111123
Q ss_pred CccEEEecc-cCCC--CChhh------------------------hcCCCccEEEEeeecCCCCC-CccccCCCccceee
Q 042636 86 YLQRLYLTG-NMKK--LPDWI------------------------FKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELR 137 (219)
Q Consensus 86 ~L~~L~l~~-~~~~--l~~~~------------------------~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~ 137 (219)
+++.|.+++ .+.+ +.... .-++.|+.|+|++|.+...+ ....+.+|.|+.|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 788888875 3322 11111 22345666666666554432 34456677777777
Q ss_pred ec-cccCCce-----EEEccCCCcccceeeecccCCcceEEEc--CCcccccceeeeec
Q 042636 138 LG-GTYNYKL-----FHFEAGWFPKLQILTLFDFVAVKSVIIE--KGAMPDIRELGIGP 188 (219)
Q Consensus 138 l~-~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~p~L~~L~l~~ 188 (219)
++ ++...-. .......|++|+.|.+..++ ..+|..- ....++|+.|.+..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence 76 3322110 11123456777777776543 3333321 11245566655444
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.80 E-value=3.3e-11 Score=96.18 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=46.6
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|..|++.. .+..+| .+..+..|+.|++..|++.-.+-+...+++++..|++. +.. +..+....-+++|.+|+++
T Consensus 207 ~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc--ccCchHHHHhhhhhhhccc
Confidence 344444433 333333 33444444444444444433332333355555555554 222 1122223334566666666
Q ss_pred ccCCcceEEEcCCcccccceeeeecCC
Q 042636 164 DFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
++. ++.++.+.|.+ .|+.|.+.++|
T Consensus 284 NN~-is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 284 NND-ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred CCc-cccCCcccccc-eeeehhhcCCc
Confidence 433 45555555555 56666666654
No 16
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=5.1e-10 Score=86.35 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccccccccccccc--ChHhHHHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 9 GSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 9 ~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
+.+++|+.|.+.++ ++.+...+++=.+|+.|+++. .+-...++.-.+.+++.|..|+++|+..........+.....
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 34455555555554 556666677777788887775 222222333345677788888888876533221111111122
Q ss_pred CccEEEecccCCC-----CChhhhcCCCccEEEEeeecCC-CCCCccccCCCccceeeeccccC-CceEEEccCCCcccc
Q 042636 86 YLQRLYLTGNMKK-----LPDWIFKLKNVIRLGLDLSGLT-EDPLRVPHALPNLLELRLGGTYN-YKLFHFEAGWFPKLQ 158 (219)
Q Consensus 86 ~L~~L~l~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~ 158 (219)
.+++|.++|+-.. +..-...+++|.+||+++|..- ..-+..+..++.|++|.++.|+. ........+..|.|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~ 366 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLV 366 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceE
Confidence 7778888763222 2222356788888888877433 33345566788888888874442 122233445677888
Q ss_pred eeeeccc
Q 042636 159 ILTLFDF 165 (219)
Q Consensus 159 ~L~l~~~ 165 (219)
+|++.+|
T Consensus 367 yLdv~g~ 373 (419)
T KOG2120|consen 367 YLDVFGC 373 (419)
T ss_pred EEEeccc
Confidence 8877765
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.78 E-value=5.5e-10 Score=97.27 Aligned_cols=179 Identities=18% Similarity=0.200 Sum_probs=120.0
Q ss_pred cccCCcccccccccccccccc-ChHhHHHH-hc-------------------------ccccceeeeeeCCCChhHHHHH
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKEL-MK-------------------------LRQLRKLGIRPKNGNGKDVCAL 54 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l-~~-------------------------l~~L~~L~l~~~~~~~~~~~~~ 54 (219)
+.+|+..+++++|++|++..+ ...+|+.+ .. +..|+.|++. ++......+..
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-nN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-NNHLTDSCFPV 378 (1081)
T ss_pred hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-cCcccccchhh
Confidence 567888888888888888766 34333321 11 1223334333 12333444556
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
+.+..+|++|++++|......+ ..+.++. .|++|+++| .++.+|..+..+..|++|...+|++...| .+..++.|
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpa-s~~~kle-~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP--e~~~l~qL 454 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPA-SKLRKLE-ELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP--ELAQLPQL 454 (1081)
T ss_pred hccccceeeeeecccccccCCH-HHHhchH-HhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech--hhhhcCcc
Confidence 7888999999999987654432 3444555 899999999 88889988999999999999999887754 67789999
Q ss_pred ceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636 134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 189 (219)
+.++++ +......+.... ..|+|++|++.++.+ ..+....++.++.+...+.
T Consensus 455 ~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~---l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTR---LVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred eEEecccchhhhhhhhhhC-CCcccceeeccCCcc---cccchhhhHHhhhhhheec
Confidence 999998 444322222222 228999999998764 2334445666665555443
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1.2e-09 Score=87.65 Aligned_cols=14 Identities=43% Similarity=0.463 Sum_probs=6.9
Q ss_pred CCccEEEEeeecCC
Q 042636 107 KNVIRLGLDLSGLT 120 (219)
Q Consensus 107 ~~L~~L~l~~~~~~ 120 (219)
++|+.|++++|.+.
T Consensus 193 ~~L~~L~L~~n~i~ 206 (319)
T cd00116 193 CNLEVLDLNNNGLT 206 (319)
T ss_pred CCCCEEeccCCccC
Confidence 45555555555443
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.73 E-value=3.6e-08 Score=88.45 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=43.4
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEe
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLM 68 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 68 (219)
.++|++|+++.+|++|++..+ ....|..++++..|.+|++.. .......+.....|.+||+|.+..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~-~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV-TGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc-ccccccccchhhhcccccEEEeec
Confidence 468888888888888888877 667888888888888777774 111111122333455666666544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.71 E-value=2.2e-08 Score=88.37 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=23.1
Q ss_pred cccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHH
Q 042636 155 PKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLT 199 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 199 (219)
+.|+.|++.++. +..++ ....++|+.|++.+| .+..+|..+
T Consensus 346 ~sL~~L~Ls~N~-L~~LP--~~lp~~L~~LdLs~N-~Lt~LP~~l 386 (754)
T PRK15370 346 PELQVLDVSKNQ-ITVLP--ETLPPTITTLDVSRN-ALTNLPENL 386 (754)
T ss_pred CcccEEECCCCC-CCcCC--hhhcCCcCEEECCCC-cCCCCCHhH
Confidence 567777777543 33332 122356777777775 355566544
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.59 E-value=8.6e-09 Score=75.16 Aligned_cols=102 Identities=23% Similarity=0.328 Sum_probs=28.8
Q ss_pred hcccccceeeeeeCCCChhHHHHHHh-ccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhh-hcCC
Q 042636 31 MKLRQLRKLGIRPKNGNGKDVCALIA-NLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWI-FKLK 107 (219)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~-~~l~ 107 (219)
.+..++++|++.+ .....+ +.++ .+.+|++|++++|...+. +.+...+ +|+.|+++. .++.++..+ ..++
T Consensus 16 ~n~~~~~~L~L~~--n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 16 NNPVKLRELNLRG--NQISTI-ENLGATLDKLEVLDLSNNQITKL---EGLPGLP-RLKTLDLSNNRISSISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-----TT----T-T--EEE--SS---S-CHHHHHH-T
T ss_pred ccccccccccccc--cccccc-cchhhhhcCCCEEECCCCCCccc---cCccChh-hhhhcccCCCCCCccccchHHhCC
Confidence 3444566666662 222221 2333 356677777766654433 3344444 677777766 566665444 3467
Q ss_pred CccEEEEeeecCCC-CCCccccCCCccceeeec
Q 042636 108 NVIRLGLDLSGLTE-DPLRVPHALPNLLELRLG 139 (219)
Q Consensus 108 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 139 (219)
+|+.|++++|++.+ .....+..+|+|+.|++.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLE 121 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence 77777777776654 234455666777777665
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.59 E-value=1.1e-07 Score=83.88 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=12.7
Q ss_pred CcccccceeeeecCCCCCcchhHH
Q 042636 176 GAMPDIRELGIGPFPLWSMYIFLT 199 (219)
Q Consensus 176 ~~~p~L~~L~l~~~~~l~~~~~~~ 199 (219)
+.+++|+.|++.+++--...+..+
T Consensus 442 ~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 442 IHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhccCCCeEECCCCCCCchHHHHH
Confidence 345666666666665433333333
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=3e-08 Score=88.88 Aligned_cols=195 Identities=18% Similarity=0.168 Sum_probs=118.4
Q ss_pred cCCc-ccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 4 VHRG-LGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 4 lP~~-l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
+|.+ +..|+.|+.|+++++ ..++|..++++-+||+|+++ ......++..++++.+|.+|++.........+ ...
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~--~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~ 638 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS--DTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GIL 638 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc--CCCccccchHHHHHHhhheecccccccccccc-chh
Confidence 3444 667899999999987 78899999999999999998 45556889999999999999998765433321 222
Q ss_pred CCcccCccEEEecc-cCCC---CChhhhcCCCccEEEEeeecC---C----------------------CCCCccccCCC
Q 042636 81 SSPPQYLQRLYLTG-NMKK---LPDWIFKLKNVIRLGLDLSGL---T----------------------EDPLRVPHALP 131 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~---l~~~~~~l~~L~~L~l~~~~~---~----------------------~~~~~~l~~l~ 131 (219)
..+. +|++|.+.. .... .-..+..+.+|+.+....... . ......+..+.
T Consensus 639 ~~L~-~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~ 717 (889)
T KOG4658|consen 639 LELQ-SLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLG 717 (889)
T ss_pred hhcc-cccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccccc
Confidence 3355 899988865 2111 123345566666666644332 0 00112344566
Q ss_pred ccceeeeccccCCceEE-----EccCC-CcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 132 NLLELRLGGTYNYKLFH-----FEAGW-FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 132 ~L~~L~l~~~~~~~~~~-----~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
+|+.|.+..+...+... ..... |+++..+.+.+|.......+... .|+|+.|.+..|+.+++++.....+.
T Consensus 718 ~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 718 NLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred CcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCCHHHHhh
Confidence 66666665322211000 00111 44555555555554444333222 48999999999998877655444433
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.55 E-value=8.3e-08 Score=84.81 Aligned_cols=172 Identities=13% Similarity=0.152 Sum_probs=103.6
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
+.+|..+. .+++.|++.++ ...+|..+. .+|++|+++. +....++..+. .+|+.|++++|..... + ..+
T Consensus 191 tsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~--N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P-~~l 260 (754)
T PRK15370 191 TTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS--NQLTSIPATLP--DTIQEMELSINRITEL-P-ERL 260 (754)
T ss_pred CcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC--CccccCChhhh--ccccEEECcCCccCcC-C-hhH
Confidence 34565553 36777777766 445555543 4788888773 33334443332 3688888888765432 1 111
Q ss_pred CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccc
Q 042636 81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQ 158 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~ 158 (219)
+.+|+.|++++ .++.+|..+. .+|+.|++++|.+...+.. + .++|+.|+++ +.... ++ ....++|+
T Consensus 261 ---~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~--LP--~~l~~sL~ 328 (754)
T PRK15370 261 ---PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTA--LP--ETLPPGLK 328 (754)
T ss_pred ---hCCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCcccc--CC--ccccccce
Confidence 23788888877 6666775443 5788888888877654321 1 2467777776 33321 21 22346889
Q ss_pred eeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHH
Q 042636 159 ILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLT 199 (219)
Q Consensus 159 ~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~ 199 (219)
.|.+.++. +..++. .-.++|+.|++.+| ++..+|.++
T Consensus 329 ~L~Ls~N~-Lt~LP~--~l~~sL~~L~Ls~N-~L~~LP~~l 365 (754)
T PRK15370 329 TLEAGENA-LTSLPA--SLPPELQVLDVSKN-QITVLPETL 365 (754)
T ss_pred eccccCCc-cccCCh--hhcCcccEEECCCC-CCCcCChhh
Confidence 99888654 454432 22478999999987 456666544
No 25
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.7e-08 Score=78.29 Aligned_cols=124 Identities=22% Similarity=0.215 Sum_probs=91.7
Q ss_pred ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEE
Q 042636 35 QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLG 113 (219)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~ 113 (219)
.|++++++ .+...++-++..=.++++.|+++.|...... ++...+ +|++|++++ .++.+..|..++.+.++|.
T Consensus 285 ~LtelDLS--~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~-~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 285 ELTELDLS--GNLITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELP-QLQLLDLSGNLLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hhhhcccc--ccchhhhhhhhhhccceeEEeccccceeeeh---hhhhcc-cceEeecccchhHhhhhhHhhhcCEeeee
Confidence 57777877 5666666666676788999999987664443 344444 899999998 6777888989999999999
Q ss_pred EeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 114 LDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 114 l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
++.|.+.. ...+..+-+|..|++. +.+..-.-....+.+|+|+++.+.+++
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 99988765 4667788888888887 444321123346778999998888765
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=2e-08 Score=73.22 Aligned_cols=130 Identities=21% Similarity=0.179 Sum_probs=45.4
Q ss_pred hccCCCCeEEEEecCCCcccccccCCC-cccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 56 ANLENLESLTVLMASKDEILDLQSLSS-PPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
.+..++++|++.++..... +.+.. .. +|+.|+++. .++.++ .+..+++|+.|++++|.+..........+|+|
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~-~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLD-KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-T-T--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc---cchhhhhc-CCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3445689999999766543 33332 33 899999998 777765 46678999999999999987532222468999
Q ss_pred ceeeec-cccCCceEEEccCCCcccceeeecccCCcceE---EEcCCcccccceeeeecCC
Q 042636 134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV---IIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~p~L~~L~l~~~~ 190 (219)
+.|+++ +.+..-.-......+|+|+.|++.+++....- .+....+|+|+.|+-....
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 999998 44422111122346899999999987754320 0111247999988876654
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.33 E-value=1.6e-06 Score=76.71 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=18.9
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeee
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIR 42 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~ 42 (219)
+.+|+.+.. +|+.|++..+ ...+|. ..++|++|+++
T Consensus 214 tsLP~~l~~--~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs 250 (788)
T PRK15387 214 TTLPDCLPA--HITTLVIPDNNLTSLPA---LPPELRTLEVS 250 (788)
T ss_pred CcCCcchhc--CCCEEEccCCcCCCCCC---CCCCCcEEEec
Confidence 456665542 5666665555 333332 24566666666
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=5.9e-08 Score=75.39 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=95.5
Q ss_pred ccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636 10 SLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ 88 (219)
Q Consensus 10 ~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 88 (219)
..+.|++++++.+ ...+.+++.-++.+|.|+++. +....+ ..++.+.+|..||+++|...+. .+|.....+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~--N~i~~v-~nLa~L~~L~~LDLS~N~Ls~~---~Gwh~KLGNIK 355 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ--NRIRTV-QNLAELPQLQLLDLSGNLLAEC---VGWHLKLGNIK 355 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccc--cceeee-hhhhhcccceEeecccchhHhh---hhhHhhhcCEe
Confidence 3567889999888 777888888899999999994 332222 3478889999999999866443 34433334999
Q ss_pred EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeec
Q 042636 89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLG 139 (219)
Q Consensus 89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~ 139 (219)
+|.+.+ .++.+. .+.++=+|..||+++|+|... ....++.+|.|+.+.+.
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 999988 666654 667888999999999999874 35678999999999987
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.29 E-value=1.3e-07 Score=75.72 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=53.4
Q ss_pred hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceE-EEccCCCcccceeeecccCCcceEEEcCCcc--
Q 042636 103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLF-HFEAGWFPKLQILTLFDFVAVKSVIIEKGAM-- 178 (219)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 178 (219)
+..+++|+++++++|.++.....+|.....++.|.+. +.. ..+ .....++..|+.|+++++. +.. +.+++|
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L~~N~-it~--~~~~aF~~ 344 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSLYDNQ-ITT--VAPGAFQT 344 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeeecCCe-eEE--Eecccccc
Confidence 5678899999999999888777888889999998886 222 111 1112345677788887643 443 233333
Q ss_pred -cccceeeeecCC
Q 042636 179 -PDIRELGIGPFP 190 (219)
Q Consensus 179 -p~L~~L~l~~~~ 190 (219)
-+|.+|++..+|
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 456666666544
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=4.3e-08 Score=75.96 Aligned_cols=177 Identities=21% Similarity=0.156 Sum_probs=105.8
Q ss_pred cccccccccc--Ch-HhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccE
Q 042636 13 DLQKLSIIEA--DS-QVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQR 89 (219)
Q Consensus 13 ~L~~L~~~~~--~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 89 (219)
++|+|++++. .. ....-+..+.+|+.|.+.+ ......++..+++-.+|+.|+++.++.-......-+......|++
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5777777765 22 2223356677788787773 344456677777778888888877654322111111111126777
Q ss_pred EEecc-c-CCC-CChhhhcC-CCccEEEEeeecCC--CCCCccc-cCCCccceeeeccccC-CceEEEccCCCcccceee
Q 042636 90 LYLTG-N-MKK-LPDWIFKL-KNVIRLGLDLSGLT--EDPLRVP-HALPNLLELRLGGTYN-YKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 90 L~l~~-~-~~~-l~~~~~~l-~~L~~L~l~~~~~~--~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~ 161 (219)
|.++. . .++ +...+.+. ++|+.|.++++.-. ..+...+ ..+|+|.+|+++++.. .+........|+.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 77764 1 111 22223333 57788888877432 2233333 3689999999984432 222233456789999999
Q ss_pred ecccCCcc-eEEEcCCcccccceeeeecCC
Q 042636 162 LFDFVAVK-SVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 162 l~~~~~~~-~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+..|-.+. +..++.+.+|.|..|++.+|=
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 98775442 333456678999999999874
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=2.3e-07 Score=75.17 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=86.3
Q ss_pred hHHHHhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCccccc-ccCCCcccCccEEEecc-cCCCCChh
Q 042636 26 VLKELMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDL-QSLSSPPQYLQRLYLTG-NMKKLPDW 102 (219)
Q Consensus 26 ~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~~~l~~~ 102 (219)
+.+.-.++.+||...+.. .....+. -+-...+++++.||++.|-.....+. .....+| +|+.|.++. .+...-..
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccc
Confidence 333335677888888874 1111111 03457789999999999866555442 3333445 999999987 44322111
Q ss_pred --hhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 103 --IFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 103 --~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
-..+++|+.|.++.|.+++.+ .+.+..+|+|+.|+++ +.... .......-++.|+.|++.+++
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCc
Confidence 246789999999999998754 4566789999999998 42111 112223335667777776543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.17 E-value=1.1e-06 Score=72.83 Aligned_cols=175 Identities=23% Similarity=0.272 Sum_probs=104.0
Q ss_pred cccccccccccccc-ChHhHHHHhccc-ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 9 GSLMDLQKLSIIEA-DSQVLKELMKLR-QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
..++.++.|++.++ ...++...+.+. +|+.|+++ .+....++..+..+++|+.|+++.|...+..... ...+ +
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~--~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~--~~~~-~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS--DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL--SNLS-N 187 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhccccccc--ccchhhhhhhhhccccccccccCCchhhhhhhhh--hhhh-h
Confidence 33445566665555 555566666664 78888777 4555555566777888888888777654442211 1233 7
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeeccc
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (219)
++.|++++ .+..+|........|+.+.++.|.+... ...+..+.++..+.+..... .......+..+.++.|++.++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCcee-eeccchhccccccceeccccc
Confidence 88888877 6777776655666788888877743332 34455666666666541111 111223345566778777754
Q ss_pred CCcceEEEcCCcccccceeeeecCCCC
Q 042636 166 VAVKSVIIEKGAMPDIRELGIGPFPLW 192 (219)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~l~~~~~l 192 (219)
. +..+.. .+.+.+++.|++.+....
T Consensus 266 ~-i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 266 Q-ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred c-cccccc-ccccCccCEEeccCcccc
Confidence 3 444443 445677777777765443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.6e-06 Score=51.95 Aligned_cols=54 Identities=33% Similarity=0.410 Sum_probs=35.2
Q ss_pred CccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 86 YLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|++|+++. .++.+| .++..+++|++|++++|.+...+...+..+++|++|+++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~ 57 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS 57 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc
Confidence 566666665 555554 345666777777777777766555666777777777765
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.11 E-value=2.9e-06 Score=70.21 Aligned_cols=156 Identities=22% Similarity=0.235 Sum_probs=101.6
Q ss_pred CcccCCcccccc-cccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLM-DLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~-~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
|..+|+....+. +|++|++..+ ...++..++.+++|+.|++. .+...+++.....++.|+.|+++++.......
T Consensus 128 i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~--~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-- 203 (394)
T COG4886 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS--FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP-- 203 (394)
T ss_pred cccCccccccchhhcccccccccchhhhhhhhhccccccccccC--CchhhhhhhhhhhhhhhhheeccCCccccCch--
Confidence 456788777775 9999998887 56666788999999999998 56666666655578889999998876644422
Q ss_pred cCCCcccCccEEEeccc-CCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCccc
Q 042636 79 SLSSPPQYLQRLYLTGN-MKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKL 157 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 157 (219)
....+.+|+++.+..+ ....+..+..+.++..+.+..+++... ...++.+++++.|+++++.... +.. .+....+
T Consensus 204 -~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l 279 (394)
T COG4886 204 -EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISS-ISS-LGSLTNL 279 (394)
T ss_pred -hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceeccccccccc-ccc-ccccCcc
Confidence 1112325777777763 555555666667777777666655442 3445666777777776332221 222 3345666
Q ss_pred ceeeecc
Q 042636 158 QILTLFD 164 (219)
Q Consensus 158 ~~L~l~~ 164 (219)
+.|++.+
T Consensus 280 ~~L~~s~ 286 (394)
T COG4886 280 RELDLSG 286 (394)
T ss_pred CEEeccC
Confidence 6666654
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.04 E-value=1.4e-07 Score=78.84 Aligned_cols=164 Identities=17% Similarity=0.145 Sum_probs=118.0
Q ss_pred cccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-
Q 042636 17 LSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG- 94 (219)
Q Consensus 17 L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~- 94 (219)
.++..+ ..++|.++..+..|..+.+. .+....++..++++..|..|+++.|+..... ..++.. -|+.|.++.
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy--~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp--~~lC~l--pLkvli~sNN 153 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILY--HNCIRTIPEAICNLEALTFLDLSSNQLSHLP--DGLCDL--PLKVLIVSNN 153 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHH--hccceecchhhhhhhHHHHhhhccchhhcCC--hhhhcC--cceeEEEecC
Confidence 344444 56677777777777777776 4556667778888888999999887664442 233333 488888876
Q ss_pred cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEE
Q 042636 95 NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVII 173 (219)
Q Consensus 95 ~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 173 (219)
+++.+|..++..+.|..|+.+.|.+... +..++++.+|+.|.+. +.... ++.+...+ .|.+|+++ |+++..+++
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfS-cNkis~iPv 228 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFS-CNKISYLPV 228 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecc-cCceeecch
Confidence 7888888888888999999999988765 3567788889888887 44321 22222233 47788888 566888888
Q ss_pred cCCcccccceeeeecCCC
Q 042636 174 EKGAMPDIRELGIGPFPL 191 (219)
Q Consensus 174 ~~~~~p~L~~L~l~~~~~ 191 (219)
....|..|+.|.+.++|.
T Consensus 229 ~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhheeeeeccCCC
Confidence 888899999999998763
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=1.1e-06 Score=69.38 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=46.2
Q ss_pred hhhcCCCccEEEEeeecCCCCC----CccccCCCccceeeeccccCCceEE-----EccCCCcccceeeecccCCcce--
Q 042636 102 WIFKLKNVIRLGLDLSGLTEDP----LRVPHALPNLLELRLGGTYNYKLFH-----FEAGWFPKLQILTLFDFVAVKS-- 170 (219)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~-- 170 (219)
.+.++++|+.|++.+|.++... -..+..|++|+.+++.+|...+.-. -....+|.|+.+.+.++..-.+
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 3456677777777776654421 1234556677777776443221111 0112366777777665432211
Q ss_pred --EEEcCCcccccceeeeecCC
Q 042636 171 --VIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 171 --~~~~~~~~p~L~~L~l~~~~ 190 (219)
+....+..|.|..|++.+|.
T Consensus 288 ~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 288 LALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHHHHhcchhhHHhcCCccc
Confidence 11122336777777777764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.95 E-value=6.7e-06 Score=49.24 Aligned_cols=57 Identities=30% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE-EccCCCcccceeeeccc
Q 042636 107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH-FEAGWFPKLQILTLFDF 165 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~-~~~~~~~~L~~L~l~~~ 165 (219)
++|++|++++|.+...+...+..+++|+.|+++ +.. ..+. ....++++|++|++.++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l--~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL--TSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSE--SEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc--CccCHHHHcCCCCCCEEeCcCC
Confidence 468889998888887777788888888888887 333 2222 12345667777777654
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.93 E-value=7.9e-07 Score=74.45 Aligned_cols=116 Identities=20% Similarity=0.239 Sum_probs=81.9
Q ss_pred cccCCcccccccccccccccc-----------------------ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhcc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-----------------------DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANL 58 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l 58 (219)
..+|..++++..|.+++++.+ ....|++++-+..|..|+.+ .+....+++.++++
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s--~nei~slpsql~~l 188 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS--KNEIQSLPSQLGYL 188 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhh--hhhhhhchHHhhhH
Confidence 456777777777777766554 23344555555566666666 45566777888888
Q ss_pred CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC
Q 042636 59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP 123 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 123 (219)
.+|+.|.+..|+.....+ .+..+ .|.+|+++. .+..+|-.+.+|++|+.|.|.+|.+...+
T Consensus 189 ~slr~l~vrRn~l~~lp~--El~~L--pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPE--ELCSL--PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHHHHHHhhhhhhhCCH--HHhCC--ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence 889988888877655433 22222 588899987 77888988999999999999888886643
No 39
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.88 E-value=1.6e-05 Score=70.01 Aligned_cols=104 Identities=25% Similarity=0.192 Sum_probs=48.8
Q ss_pred cccceeeeeeCCCChhHHHHHHhc-cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccE
Q 042636 34 RQLRKLGIRPKNGNGKDVCALIAN-LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIR 111 (219)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~ 111 (219)
.+|++|++++.......-+..++. +++|+.|.+++.......-..-..++| +|..|++++ +++.+ ..+..+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc-HHHhccccHHH
Confidence 356666665411112222223333 356666666554332221111122233 666666665 55544 34455666666
Q ss_pred EEEeeecCCC-CCCccccCCCccceeeec
Q 042636 112 LGLDLSGLTE-DPLRVPHALPNLLELRLG 139 (219)
Q Consensus 112 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 139 (219)
|.+.+-.+.. .+...+-++.+|+.|+++
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS 228 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDIS 228 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecc
Confidence 6665544443 223344456666666665
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=3.2e-05 Score=60.33 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=62.5
Q ss_pred cccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCC--CCChhhhcCC
Q 042636 32 KLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMK--KLPDWIFKLK 107 (219)
Q Consensus 32 ~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~--~l~~~~~~l~ 107 (219)
..+.++.+++.+ ....+.++...+.+|+.|++|+++.|.....+ .+++-+..+|+.|.+.+ ++. .....+..++
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI--KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc--ccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 467889999987 45567788888999999999999998776553 34432223999999987 543 3455566777
Q ss_pred CccEEEEeeec
Q 042636 108 NVIRLGLDLSG 118 (219)
Q Consensus 108 ~L~~L~l~~~~ 118 (219)
.++.|+++.|.
T Consensus 147 ~vtelHmS~N~ 157 (418)
T KOG2982|consen 147 KVTELHMSDNS 157 (418)
T ss_pred hhhhhhhccch
Confidence 77888887773
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=9.1e-06 Score=71.53 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=25.4
Q ss_pred CccEEEecc-cCC--CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 86 YLQRLYLTG-NMK--KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 86 ~L~~L~l~~-~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|++|.+.+ .+. ++..-..++++|..||+|++.+... .+++++.+|+.|.+.
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMR 203 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhcc
Confidence 555555554 221 1222223555566666655555442 445555555555553
No 42
>PLN03150 hypothetical protein; Provisional
Probab=97.77 E-value=1.8e-05 Score=69.39 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=75.5
Q ss_pred ccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636 14 LQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY 91 (219)
Q Consensus 14 L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 91 (219)
++.|++.++ .+.+|.+++++++|+.|+++. +...+.++..++++++|+.|++++|......+ +.+..++ +|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~-~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG-NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLT-SLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCC-CcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCC-CCCEEE
Confidence 556676666 567888899999999999983 44455777788999999999999987765443 3455555 899999
Q ss_pred ecc-cCC-CCChhhhcC-CCccEEEEeeec
Q 042636 92 LTG-NMK-KLPDWIFKL-KNVIRLGLDLSG 118 (219)
Q Consensus 92 l~~-~~~-~l~~~~~~l-~~L~~L~l~~~~ 118 (219)
+++ .+. .+|..+... .++..+++.+|.
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCc
Confidence 987 555 478776543 466788887764
No 43
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.70 E-value=9.3e-07 Score=71.02 Aligned_cols=115 Identities=21% Similarity=0.159 Sum_probs=67.0
Q ss_pred ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC
Q 042636 23 DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP 100 (219)
Q Consensus 23 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~ 100 (219)
...+| ..|+.+++||.|+++. +....-.+.+++++.+|-.|-+.+++....++-..+.+.. .++.|.+.. ++..++
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~-slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS-SLQRLLLNANHINCIR 156 (498)
T ss_pred cccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH-HHHHHhcChhhhcchh
Confidence 33344 4478888888888883 3333334556777777766666664443333323333343 777777765 555543
Q ss_pred -hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 101 -DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 101 -~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
..+..++++..|.+-+|.+....-..+..+..++.+.+.
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 345667777777777776655444455555566655554
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.59 E-value=0.00012 Score=64.16 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=44.2
Q ss_pred ccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 87 LQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 87 L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
++.|++.. .+. .+|..+..+++|+.|++++|.+.+..+..++.+++|+.|+++ +...+. ++...+.+++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 45555554 333 355566666666666666666655444455666666666666 333322 33334456666666666
Q ss_pred ccC
Q 042636 164 DFV 166 (219)
Q Consensus 164 ~~~ 166 (219)
++.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 543
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.57 E-value=2.8e-05 Score=61.64 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=79.7
Q ss_pred cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc------------cccCCCcccCccEEEecc-
Q 042636 32 KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD------------LQSLSSPPQYLQRLYLTG- 94 (219)
Q Consensus 32 ~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~L~~L~l~~- 94 (219)
..++|++++++. +-. ...+-.-+..+..|++|.+.+|....... .......+ .|+.+....
T Consensus 90 ~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~-~Lrv~i~~rN 167 (382)
T KOG1909|consen 90 GCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKP-KLRVFICGRN 167 (382)
T ss_pred cCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCc-ceEEEEeecc
Confidence 344666666663 111 12222334445566666666655421100 01122223 666666655
Q ss_pred cCCCCC-----hhhhcCCCccEEEEeeecCCCCCC----ccccCCCccceeeec-cccCCc---eEEEccCCCcccceee
Q 042636 95 NMKKLP-----DWIFKLKNVIRLGLDLSGLTEDPL----RVPHALPNLLELRLG-GTYNYK---LFHFEAGWFPKLQILT 161 (219)
Q Consensus 95 ~~~~l~-----~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~-~~~~~~---~~~~~~~~~~~L~~L~ 161 (219)
.+...+ ..+...+.|+.+.+..|.|..... ..+.++++|+.|++. +.+... .+......+++|+.+.
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 333322 224455777888887777765432 345678888888887 333211 0111123467788888
Q ss_pred ecccCCcce--EEE---cCCcccccceeeeecCC
Q 042636 162 LFDFVAVKS--VII---EKGAMPDIRELGIGPFP 190 (219)
Q Consensus 162 l~~~~~~~~--~~~---~~~~~p~L~~L~l~~~~ 190 (219)
+.+|.--.. ..+ -....|+|+.|.+.+|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 877642111 000 01236888888888875
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00066 Score=55.98 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=26.3
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc--cCCCCChhhhcCCCccEEEEeee
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG--NMKKLPDWIFKLKNVIRLGLDLS 117 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~l~~~~~~l~~L~~L~l~~~ 117 (219)
+..+.+++.|++++|.... ++..|.+|++|.+.. .++.+|..+ ..+|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s------LP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES------LPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc------cCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 4445566666666542211 112233566666653 344444332 245666666555
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.34 E-value=0.0002 Score=39.73 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=22.6
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCC
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTE 121 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~ 121 (219)
+|++|++++ .++.+|+.+..+++|+.|++++|.+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 566666666 666666656677777777777776653
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=8.8e-05 Score=57.99 Aligned_cols=65 Identities=18% Similarity=0.101 Sum_probs=41.7
Q ss_pred cCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcc
Q 042636 105 KLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVK 169 (219)
Q Consensus 105 ~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 169 (219)
.++++..+.+..|.+.... -.....+|.+..|.+. +.+..-.-.-+..+|++|..|++.+.+-+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4678888888888775532 3345567777788887 443221112234678999999988766444
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.10 E-value=0.00039 Score=38.56 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=20.7
Q ss_pred cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCC
Q 042636 34 RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKD 72 (219)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 72 (219)
++|++|+++ .+....++..+++|++|+.|++++|...
T Consensus 1 ~~L~~L~l~--~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLS--NNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEET--SSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEcc--CCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 356666666 3344445555666777777777666543
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.05 E-value=3.8e-05 Score=66.57 Aligned_cols=110 Identities=24% Similarity=0.201 Sum_probs=72.7
Q ss_pred ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh
Q 042636 23 DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD 101 (219)
Q Consensus 23 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~ 101 (219)
......++.-++.++.|+++. +-... +..+..+.+|++||+++|..... +.+.+....|+.|.++. .++.+.
T Consensus 176 L~~mD~SLqll~ale~LnLsh--Nk~~~-v~~Lr~l~~LkhLDlsyN~L~~v---p~l~~~gc~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 176 LVLMDESLQLLPALESLNLSH--NKFTK-VDNLRRLPKLKHLDLSYNCLRHV---PQLSMVGCKLQLLNLRNNALTTLR- 248 (1096)
T ss_pred HHhHHHHHHHHHHhhhhccch--hhhhh-hHHHHhcccccccccccchhccc---cccchhhhhheeeeecccHHHhhh-
Confidence 334445566678888888883 22222 23677888899999988765443 23333333688888887 566553
Q ss_pred hhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeec
Q 042636 102 WIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLG 139 (219)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~ 139 (219)
.+.++.+|+.||+++|-+.+. ....+..+..|+.|++.
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLE 287 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhc
Confidence 567888999999998877652 23445566777777775
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.00 E-value=0.0004 Score=53.77 Aligned_cols=182 Identities=18% Similarity=0.115 Sum_probs=90.3
Q ss_pred ccccccccccccccc--ChHhHHH----Hhcccccceeeeee--CCCC-hhHHHHHH---------hccCCCCeEEEEec
Q 042636 8 LGSLMDLQKLSIIEA--DSQVLKE----LMKLRQLRKLGIRP--KNGN-GKDVCALI---------ANLENLESLTVLMA 69 (219)
Q Consensus 8 l~~l~~L~~L~~~~~--~~~~~~~----l~~l~~L~~L~l~~--~~~~-~~~~~~~l---------~~l~~L~~L~l~~~ 69 (219)
+-++++||..+++++ ...+++. +.+-+.|.+|.+.. .+.. .+.+-.++ ++-+.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 345666777776666 3333332 44556677776664 1111 11111111 22356666666555
Q ss_pred CCCcccc--cccCCCcccCccEEEecc-cCCC--C----ChhhhcCCCccEEEEeeecCCCCCC----ccccCCCcccee
Q 042636 70 SKDEILD--LQSLSSPPQYLQRLYLTG-NMKK--L----PDWIFKLKNVIRLGLDLSGLTEDPL----RVPHALPNLLEL 136 (219)
Q Consensus 70 ~~~~~~~--~~~~~~~~~~L~~L~l~~-~~~~--l----~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L 136 (219)
....... +........+|+.+.+.. .++. + .-.+..+++|+.||+.+|.++.... .++..|+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 4422211 111011112566666653 2321 1 1123456788888888877654322 235567888888
Q ss_pred eeccccCCceE------EEccCCCcccceeeecccCCcceEE-------EcCCcccccceeeeecC
Q 042636 137 RLGGTYNYKLF------HFEAGWFPKLQILTLFDFVAVKSVI-------IEKGAMPDIRELGIGPF 189 (219)
Q Consensus 137 ~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~p~L~~L~l~~~ 189 (219)
.+.+|.....- .+....+|+|+.|...++..-.++. ++.+++|-|..|.+.++
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 88755433211 0111236778888776543322221 23456788877777764
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0014 Score=48.53 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=37.9
Q ss_pred CCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhh-cCCCccEEEEeeecCCCC-CCccccCCCcccee
Q 042636 60 NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIF-KLKNVIRLGLDLSGLTED-PLRVPHALPNLLEL 136 (219)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~-~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L 136 (219)
+...+|+++|..... ..++.++ .|..|.+.. .+..+.+.+. .+++|+.|.+++|.+... +...+..+|+|++|
T Consensus 43 ~~d~iDLtdNdl~~l---~~lp~l~-rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL---DNLPHLP-RLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc---ccCCCcc-ccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 445555555443222 3333344 666666654 4554443443 334566666666655442 23445555666655
Q ss_pred eec
Q 042636 137 RLG 139 (219)
Q Consensus 137 ~l~ 139 (219)
.+-
T Consensus 119 tll 121 (233)
T KOG1644|consen 119 TLL 121 (233)
T ss_pred eec
Confidence 553
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.77 E-value=0.00021 Score=59.68 Aligned_cols=102 Identities=25% Similarity=0.334 Sum_probs=61.2
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCC
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKN 108 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~ 108 (219)
+..+++|+.+++. .+....+...+..+.+|++|++++|...+... +..++ .|+.|++.+ .++.+. .+..+..
T Consensus 91 l~~~~~l~~l~l~--~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~-~L~~L~l~~N~i~~~~-~~~~l~~ 163 (414)
T KOG0531|consen 91 LSKLKSLEALDLY--DNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLT-LLKELNLSGNLISDIS-GLESLKS 163 (414)
T ss_pred cccccceeeeecc--ccchhhcccchhhhhcchheeccccccccccc---hhhcc-chhhheeccCcchhcc-CCccchh
Confidence 5566677777666 33333333325667778888887766544433 33333 577777776 454443 3444777
Q ss_pred ccEEEEeeecCCCCCC-ccccCCCccceeeec
Q 042636 109 VIRLGLDLSGLTEDPL-RVPHALPNLLELRLG 139 (219)
Q Consensus 109 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 139 (219)
|+.+++++|.+..... . ...+.+++.+++.
T Consensus 164 L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 164 LKLLDLSYNRIVDIENDE-LSELISLEELDLG 194 (414)
T ss_pred hhcccCCcchhhhhhhhh-hhhccchHHHhcc
Confidence 7888887777665322 1 4667777777765
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.59 E-value=8e-05 Score=64.67 Aligned_cols=106 Identities=23% Similarity=0.141 Sum_probs=62.2
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
+.=++.|+.|++++|+..+.. .+...+ .|++|+++. ++..+|..-..--.|+.|.+++|.+.. ...+.++.+|
T Consensus 183 Lqll~ale~LnLshNk~~~v~---~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t--L~gie~LksL 256 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD---NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT--LRGIENLKSL 256 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH---HHHhcc-cccccccccchhccccccchhhhhheeeeecccHHHh--hhhHHhhhhh
Confidence 333467888888887665543 334444 788888876 666666332222347888888877665 3556778888
Q ss_pred ceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
+.|+++ +...+-.--.+.+.+..|+.|.+.+++
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 888887 444221101122334556666665543
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.91 E-value=0.02 Score=42.64 Aligned_cols=63 Identities=25% Similarity=0.115 Sum_probs=30.5
Q ss_pred hcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 104 FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 104 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
..++.|++|.+..|+|...+...-..+|+|..|.+. +....-.-..+...+|.|++|.+.+++
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 355666666666666655443333345666666665 222110001122345666666665443
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.00027 Score=54.84 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=51.2
Q ss_pred cCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccce
Q 042636 58 LENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLE 135 (219)
Q Consensus 58 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~ 135 (219)
+.+.+.|+..++...+. .....|+ .|+.|.++. .++.+. .+..+++|+.|+|..|.|.+.+ +.-+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp-~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMP-LLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcc-cceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45567777766655433 3344555 788887776 555553 4567788888888888776643 455677888888
Q ss_pred eeec
Q 042636 136 LRLG 139 (219)
Q Consensus 136 L~l~ 139 (219)
|+|.
T Consensus 93 LWL~ 96 (388)
T KOG2123|consen 93 LWLD 96 (388)
T ss_pred Hhhc
Confidence 8876
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=0.00045 Score=53.64 Aligned_cols=99 Identities=24% Similarity=0.304 Sum_probs=65.9
Q ss_pred ccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC--hhhhcCCCc
Q 042636 33 LRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP--DWIFKLKNV 109 (219)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~--~~~~~l~~L 109 (219)
+.+.++|+.++ .. -.-.+...+|+.|++|.++-|......++... . +|++|++.. .++.+. ..+.++++|
T Consensus 18 l~~vkKLNcwg--~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rC---t-rLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWG--CG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRC---T-RLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccC--CC-ccHHHHHHhcccceeEEeeccccccchhHHHH---H-HHHHHHHHhcccccHHHHHHHhcCchh
Confidence 56778887773 11 12234457899999999998766554443332 2 899999987 666553 245678889
Q ss_pred cEEEEeeecCCCCCC-----ccccCCCccceeee
Q 042636 110 IRLGLDLSGLTEDPL-----RVPHALPNLLELRL 138 (219)
Q Consensus 110 ~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l 138 (219)
+.|-|..|...+..- ..+..+|+|+.|+=
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 998888776654321 23556899988873
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.38 E-value=0.0029 Score=51.74 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=44.4
Q ss_pred hcCCCccEEEEeeecCC-CCCCcccc-CCCccceeeeccccCCc--eEEEccCCCcccceeeecccCCcceE-----EEc
Q 042636 104 FKLKNVIRLGLDLSGLT-EDPLRVPH-ALPNLLELRLGGTYNYK--LFHFEAGWFPKLQILTLFDFVAVKSV-----IIE 174 (219)
Q Consensus 104 ~~l~~L~~L~l~~~~~~-~~~~~~l~-~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~ 174 (219)
....+|+.+.++.|+.- ...+..++ +++.|+.+++..+..+. .+......++.|+.+.+.+|....+- ...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 34567777777777532 22233333 46777777776332221 12223345667777766654433322 111
Q ss_pred CCcccccceeeeecCCCC
Q 042636 175 KGAMPDIRELGIGPFPLW 192 (219)
Q Consensus 175 ~~~~p~L~~L~l~~~~~l 192 (219)
..++..|..+.+.+|+.+
T Consensus 397 ~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLI 414 (483)
T ss_pred cccccccceeeecCCCCc
Confidence 123445555556555543
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.34 E-value=0.001 Score=54.35 Aligned_cols=194 Identities=17% Similarity=0.170 Sum_probs=104.5
Q ss_pred cccccccccccccc---ChHhHHHHh-cccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEecCCCccccccc-CCC
Q 042636 9 GSLMDLQKLSIIEA---DSQVLKELM-KLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMASKDEILDLQS-LSS 82 (219)
Q Consensus 9 ~~l~~L~~L~~~~~---~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~ 82 (219)
..+.+++.|.+..+ ++.....++ .+++|+++++............ ....+++|++++++|+.......+.. ..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 34566777766666 444444443 4788888888721222333333 23457889999998875433211111 111
Q ss_pred cccCccEEEeccc----------------------------CCCCChhh--hcCCCccEEEEeeecCC-CCCCccc-cCC
Q 042636 83 PPQYLQRLYLTGN----------------------------MKKLPDWI--FKLKNVIRLGLDLSGLT-EDPLRVP-HAL 130 (219)
Q Consensus 83 ~~~~L~~L~l~~~----------------------------~~~l~~~~--~~l~~L~~L~l~~~~~~-~~~~~~l-~~l 130 (219)
.. .++.+...++ +++...|. ..+..|+.++.+++... ..+.+.+ ++.
T Consensus 241 ~~-~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 241 CK-ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred ch-hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 11 2333322221 11111111 23456777777766432 2333444 467
Q ss_pred Cccceeeeccc--cCCceEEEccCCCcccceeeecccCCcce--EEEcCCcccccceeeeecCCCCCcchhHHhhhhhh
Q 042636 131 PNLLELRLGGT--YNYKLFHFEAGWFPKLQILTLFDFVAVKS--VIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQ 205 (219)
Q Consensus 131 ~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~~ 205 (219)
++|+.|-++.+ +....++......+.|+.+++..+-...+ +.-...++|.|+.+.++-|....+ .|+.++.+.
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD--~gi~~l~~~ 396 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD--EGIRHLSSS 396 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh--hhhhhhhhc
Confidence 88888888733 22222233344567888888876543332 222234689999999998876653 366776653
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.18 E-value=0.0075 Score=50.45 Aligned_cols=82 Identities=26% Similarity=0.203 Sum_probs=50.5
Q ss_pred HHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCC
Q 042636 52 CALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHAL 130 (219)
Q Consensus 52 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 130 (219)
...+..+++|+.|++.+|....... .+..++ +|++|+++. .++.+. .+..+..|+.|++++|.+... ..+..+
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~--~l~~~~-~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~--~~~~~l 161 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIEN--LLSSLV-NLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDI--SGLESL 161 (414)
T ss_pred hcccccccceeeeeccccchhhccc--chhhhh-cchheecccccccccc-chhhccchhhheeccCcchhc--cCCccc
Confidence 3346667777777777765544432 033344 777777776 565553 445566677788877777653 344456
Q ss_pred Cccceeeec
Q 042636 131 PNLLELRLG 139 (219)
Q Consensus 131 ~~L~~L~l~ 139 (219)
++|+.+++.
T Consensus 162 ~~L~~l~l~ 170 (414)
T KOG0531|consen 162 KSLKLLDLS 170 (414)
T ss_pred hhhhcccCC
Confidence 777777765
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.87 E-value=0.0042 Score=43.40 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCcccc
Q 042636 50 DVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPH 128 (219)
Q Consensus 50 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 128 (219)
..+..+.+..+|...++++|.+.+..+ .+...++-++.|.+.. .+.++|..+..++.|+.+.++.|.+...+ ..+.
T Consensus 44 davy~l~~~~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p-~vi~ 120 (177)
T KOG4579|consen 44 DAVYMLSKGYELTKISLSDNGFKKFPK--KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP-RVIA 120 (177)
T ss_pred HHHHHHhCCceEEEEecccchhhhCCH--HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch-HHHH
Confidence 444555566666667777766544322 2222222566666665 66677777777778888888877776543 3333
Q ss_pred CCCccceeeec
Q 042636 129 ALPNLLELRLG 139 (219)
Q Consensus 129 ~l~~L~~L~l~ 139 (219)
.+.++.+|+..
T Consensus 121 ~L~~l~~Lds~ 131 (177)
T KOG4579|consen 121 PLIKLDMLDSP 131 (177)
T ss_pred HHHhHHHhcCC
Confidence 46666666654
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.83 E-value=0.011 Score=45.53 Aligned_cols=81 Identities=27% Similarity=0.255 Sum_probs=39.1
Q ss_pred hccCCCCeEEEEecCCCcccccccCCC-cccCccEEEecc-cCCC---CChhhhcCCCccEEEEeeecCCCCC---Cccc
Q 042636 56 ANLENLESLTVLMASKDEILDLQSLSS-PPQYLQRLYLTG-NMKK---LPDWIFKLKNVIRLGLDLSGLTEDP---LRVP 127 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~-~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~---~~~l 127 (219)
-.|++|+.|.++.|.......+.-+.. .| +|+++.+++ .+.. ++ .+..+++|..|++.+|...... -..+
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P-~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAP-NLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCC-ceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 345566666666653322221111111 13 666666665 3221 21 2345666777777666554311 1234
Q ss_pred cCCCccceeee
Q 042636 128 HALPNLLELRL 138 (219)
Q Consensus 128 ~~l~~L~~L~l 138 (219)
..+|+|++|+-
T Consensus 140 ~ll~~L~~LD~ 150 (260)
T KOG2739|consen 140 LLLPSLKYLDG 150 (260)
T ss_pred HHhhhhccccc
Confidence 45677766664
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.56 E-value=0.0086 Score=50.62 Aligned_cols=15 Identities=7% Similarity=0.310 Sum_probs=7.9
Q ss_pred ccccceeeeecCCCC
Q 042636 178 MPDIRELGIGPFPLW 192 (219)
Q Consensus 178 ~p~L~~L~l~~~~~l 192 (219)
+.+++.+.+.+|+..
T Consensus 426 ~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVI 440 (482)
T ss_pred hhccccCCccCcccc
Confidence 344555556655544
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0022 Score=47.47 Aligned_cols=86 Identities=16% Similarity=0.158 Sum_probs=52.0
Q ss_pred CccEEEEeeecCCCCCCccccCCCccceeeeccccCCceE--EEccCCCcccceeeecccCCcceEEEc-CCccccccee
Q 042636 108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLF--HFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIREL 184 (219)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L 184 (219)
.++.++-++++|....+.-+..++.++.|.+.+|..-+.. ....+.+++|+.|++.+|+++++--.. ...+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566777777766655556666777777777644322211 122335688888888888776542111 1347888888
Q ss_pred eeecCCCCC
Q 042636 185 GIGPFPLWS 193 (219)
Q Consensus 185 ~l~~~~~l~ 193 (219)
.+.+.+...
T Consensus 182 ~l~~l~~v~ 190 (221)
T KOG3864|consen 182 HLYDLPYVA 190 (221)
T ss_pred HhcCchhhh
Confidence 888766443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.95 E-value=0.007 Score=51.15 Aligned_cols=109 Identities=17% Similarity=0.079 Sum_probs=44.6
Q ss_pred cccccccccccc--Ch--HhHHHHhcccccceeeeee----CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCC
Q 042636 11 LMDLQKLSIIEA--DS--QVLKELMKLRQLRKLGIRP----KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSS 82 (219)
Q Consensus 11 l~~L~~L~~~~~--~~--~~~~~l~~l~~L~~L~l~~----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 82 (219)
...|+.|.+..+ .. .........++|+.|++.. ..............+.+|+.|+++++.......+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 344555555444 11 1233344556666666542 001111111223334566666666554211111111111
Q ss_pred cccCccEEEeccc--CCC--CChhhhcCCCccEEEEeeecC
Q 042636 83 PPQYLQRLYLTGN--MKK--LPDWIFKLKNVIRLGLDLSGL 119 (219)
Q Consensus 83 ~~~~L~~L~l~~~--~~~--l~~~~~~l~~L~~L~l~~~~~ 119 (219)
...+|+.|.+..+ ++. +-.....+++|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1125666654331 221 112224456666666666544
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.85 E-value=0.071 Score=41.11 Aligned_cols=103 Identities=17% Similarity=0.098 Sum_probs=52.0
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeee--cCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLS--GLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~ 161 (219)
.++.+++.. .++.+- .+..+++|++|.++.| .+..........+|+|+++.++ +.+..-...-+...+++|..|+
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 455555543 222221 2336778888888888 3333211222345888888887 3332211111223455666777
Q ss_pred ecccCCcceEEEc----CCcccccceeeeecCC
Q 042636 162 LFDFVAVKSVIIE----KGAMPDIRELGIGPFP 190 (219)
Q Consensus 162 l~~~~~~~~~~~~----~~~~p~L~~L~l~~~~ 190 (219)
+.+|.... ..-. ..-+|+|+.|+-.++.
T Consensus 123 l~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 123 LFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred cccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence 76665332 1100 1125777776655554
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.47 E-value=0.011 Score=41.32 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=22.8
Q ss_pred CccEEEecc-cCCCCChhh-hcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWI-FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.|+..++++ .+..+|..+ .+++.++.+.++.|.+.+.+.+ ++.||.|+.++++
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLR 108 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccc
Confidence 344444444 334444333 2333444444444444443322 4444555544444
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.88 E-value=0.17 Score=42.08 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=28.2
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeecc
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGG 140 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 140 (219)
++++|+++. .++.+| ....+|+.|.+++|.--...+..+ .++|++|.++.
T Consensus 53 ~l~~L~Is~c~L~sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~ 103 (426)
T PRK15386 53 ASGRLYIKDCDIESLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH 103 (426)
T ss_pred CCCEEEeCCCCCcccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccC
Confidence 677777776 566666 233467777776653221111111 25677777763
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.074 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=7.9
Q ss_pred cccceeeeecCCCCCcch
Q 042636 179 PDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 179 p~L~~L~l~~~~~l~~~~ 196 (219)
|+|+.|++++|. ++.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456667777665 54443
No 70
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.54 E-value=0.091 Score=41.13 Aligned_cols=84 Identities=14% Similarity=0.075 Sum_probs=44.2
Q ss_pred CCccEEEEeeecCCCCCC-----ccccCCCccceeeec-cccCCce---EEEccCCCcccceeeecccCCcceE------
Q 042636 107 KNVIRLGLDLSGLTEDPL-----RVPHALPNLLELRLG-GTYNYKL---FHFEAGWFPKLQILTLFDFVAVKSV------ 171 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l~-~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~------ 171 (219)
.+|+.+.+..|.|..... ..+..+.+|+.|+++ +.+.-.. +......++.|+.|.+.+|---..-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 467777777777655422 234456778888876 3332100 0011122456778877765321100
Q ss_pred EEcCCcccccceeeeecCC
Q 042636 172 IIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 172 ~~~~~~~p~L~~L~l~~~~ 190 (219)
.+...-+|+|+.|...+..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred HhhhhcCCCccccccchhh
Confidence 0111236888888888765
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.92 E-value=0.043 Score=40.84 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=20.3
Q ss_pred CCCccEEEEeee-cCCCCCCccccCCCccceeeec
Q 042636 106 LKNVIRLGLDLS-GLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 106 l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.++|+.|++++| +|++.....+..+++|+.|.+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 356666666665 3444445556666666666664
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.24 E-value=0.081 Score=24.30 Aligned_cols=20 Identities=5% Similarity=-0.134 Sum_probs=11.6
Q ss_pred ccceeeeecCCCCCcchhHHh
Q 042636 180 DIRELGIGPFPLWSMYIFLTD 200 (219)
Q Consensus 180 ~L~~L~l~~~~~l~~~~~~~~ 200 (219)
+|+.|++++| ++..+|.++.
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3566666666 5556665543
No 73
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.04 E-value=0.3 Score=23.33 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.8
Q ss_pred ccccceeeeecCCCCC
Q 042636 178 MPDIRELGIGPFPLWS 193 (219)
Q Consensus 178 ~p~L~~L~l~~~~~l~ 193 (219)
+|+|+.|++.+|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888776
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.53 E-value=0.15 Score=34.78 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=29.9
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
+.++++|+.+.+... . .......+.... +++.+.+...+..++ ..+..+.+++.+.+..+ +.......+.+. ++
T Consensus 31 F~~~~~l~~i~~~~~-~-~~i~~~~F~~~~-~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l 105 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-L-TSIGDNAFSNCK-SLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL 105 (129)
T ss_dssp TTT-TT-SEEEESST-T-SCE-TTTTTT-T-T-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred ccccccccccccccc-c-cccceeeeeccc-ccccccccccccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence 344555666655432 1 111112233333 566666643332222 23344667777776432 332223445555 66
Q ss_pred ceeee
Q 042636 134 LELRL 138 (219)
Q Consensus 134 ~~L~l 138 (219)
+.+.+
T Consensus 106 ~~i~~ 110 (129)
T PF13306_consen 106 KEINI 110 (129)
T ss_dssp -EEE-
T ss_pred eEEEE
Confidence 65555
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.99 E-value=1.4 Score=29.94 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=20.8
Q ss_pred CccEEEecccCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636 86 YLQRLYLTGNMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL 138 (219)
Q Consensus 86 ~L~~L~l~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 138 (219)
+++.+.+...+..++. .+..+.+++.+.+.. .+...+...+..+++++.+.+
T Consensus 36 ~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 36 SLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred ccccccccccccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 5556655543333322 233444566666633 222222234445555555555
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.03 E-value=0.44 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=11.9
Q ss_pred CCccEEEEeeecCCCCCCc
Q 042636 107 KNVIRLGLDLSGLTEDPLR 125 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~ 125 (219)
.+|++|++++|++...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777766655433
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.03 E-value=0.44 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=11.9
Q ss_pred CCccEEEEeeecCCCCCCc
Q 042636 107 KNVIRLGLDLSGLTEDPLR 125 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~ 125 (219)
.+|++|++++|++...+..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4667777777766655433
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.94 E-value=2.4 Score=19.49 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=3.6
Q ss_pred cccccccccc
Q 042636 13 DLQKLSIIEA 22 (219)
Q Consensus 13 ~L~~L~~~~~ 22 (219)
+|++|++.++
T Consensus 3 ~L~~L~l~~n 12 (24)
T PF13516_consen 3 NLETLDLSNN 12 (24)
T ss_dssp T-SEEE-TSS
T ss_pred CCCEEEccCC
Confidence 4444444443
No 79
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.89 E-value=6.3 Score=19.05 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=11.0
Q ss_pred CCccEEEEeeecCCC
Q 042636 107 KNVIRLGLDLSGLTE 121 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~ 121 (219)
++|+.|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467888888887754
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=52.55 E-value=8.7 Score=18.40 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=10.1
Q ss_pred CCccEEEEeeecCCC
Q 042636 107 KNVIRLGLDLSGLTE 121 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~ 121 (219)
.+|+.|++++|.|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 467777777776643
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=40.66 E-value=1.2 Score=38.08 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=7.8
Q ss_pred cCCCccEEEEeeecCC
Q 042636 105 KLKNVIRLGLDLSGLT 120 (219)
Q Consensus 105 ~l~~L~~L~l~~~~~~ 120 (219)
.++.++.+.++.|.+.
T Consensus 288 ~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 288 SCRQLEELSLSNNPLT 303 (478)
T ss_pred hhHHHHHhhcccCccc
Confidence 3445555555554443
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=34.32 E-value=24 Score=16.97 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=10.6
Q ss_pred CCccEEEEeeecCCCC
Q 042636 107 KNVIRLGLDLSGLTED 122 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~ 122 (219)
++|+.|.+++|++...
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4577777777776553
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.46 E-value=14 Score=32.15 Aligned_cols=81 Identities=26% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccCCCCeEEEEecCCCcccccccCCCcccCccEEEeccc--CCCCChhhhcCC--CccEEEEeeecCCCC-------CCc
Q 042636 57 NLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGN--MKKLPDWIFKLK--NVIRLGLDLSGLTED-------PLR 125 (219)
Q Consensus 57 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~l~~~~~~l~--~L~~L~l~~~~~~~~-------~~~ 125 (219)
+.+.+..+++++|.......+.++......|..|+++++ ......++.+.. .|+.|-+.+|.+... .-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Q ss_pred cccCCCccceee
Q 042636 126 VPHALPNLLELR 137 (219)
Q Consensus 126 ~l~~l~~L~~L~ 137 (219)
.-..+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=29.39 E-value=3.2 Score=32.04 Aligned_cols=38 Identities=11% Similarity=-0.021 Sum_probs=16.2
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEec
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMA 69 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 69 (219)
+..++.+..|+++ .+.....+...+++..+++++...|
T Consensus 61 ~s~~t~~~rl~~s--knq~~~~~~d~~q~~e~~~~~~~~n 98 (326)
T KOG0473|consen 61 FSILTRLVRLDLS--KNQIKFLPKDAKQQRETVNAASHKN 98 (326)
T ss_pred hHHHHHHHHHhcc--HhhHhhChhhHHHHHHHHHHHhhcc
Confidence 3334455555555 2233333333444444444444443
Done!