Query 042636
Match_columns 219
No_of_seqs 108 out of 2100
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 14:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 3E-22 1E-26 160.2 10.0 201 1-205 93-303 (328)
2 4fcg_A Uncharacterized protein 99.8 3.8E-19 1.3E-23 142.2 6.2 184 1-188 116-310 (328)
3 1ogq_A PGIP-2, polygalacturona 99.7 2.4E-18 8.2E-23 136.7 0.4 190 3-197 67-286 (313)
4 1ogq_A PGIP-2, polygalacturona 99.7 3.3E-18 1.1E-22 135.9 0.5 189 12-203 50-268 (313)
5 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-16 5.1E-21 124.5 7.7 182 2-189 24-211 (285)
6 1ozn_A Reticulon 4 receptor; N 99.6 1E-16 3.5E-21 125.4 4.7 187 2-192 45-238 (285)
7 3rgz_A Protein brassinosteroid 99.6 1.5E-16 5.1E-21 140.4 5.2 134 3-139 409-546 (768)
8 3o6n_A APL1; leucine-rich repe 99.6 8.7E-16 3E-20 125.3 8.1 75 127-203 244-318 (390)
9 2o6q_A Variable lymphocyte rec 99.6 5.5E-16 1.9E-20 120.5 6.3 182 1-190 28-216 (270)
10 2z66_A Variable lymphocyte rec 99.6 4.5E-17 1.5E-21 128.7 0.1 38 102-139 170-207 (306)
11 2z66_A Variable lymphocyte rec 99.6 2.6E-16 8.8E-21 124.3 3.5 133 2-139 20-158 (306)
12 3rgz_A Protein brassinosteroid 99.6 1.8E-16 6.3E-21 139.8 2.6 197 4-203 310-538 (768)
13 1p9a_G Platelet glycoprotein I 99.6 1.3E-15 4.4E-20 119.7 5.7 178 2-190 23-206 (290)
14 4eco_A Uncharacterized protein 99.6 5.7E-17 1.9E-21 140.3 -2.3 132 4-139 198-361 (636)
15 1h6u_A Internalin H; cell adhe 99.6 2.5E-15 8.5E-20 119.0 7.3 168 7-190 58-228 (308)
16 3t6q_A CD180 antigen; protein- 99.6 2.8E-16 9.5E-21 135.0 1.8 196 3-201 292-498 (606)
17 2id5_A Lingo-1, leucine rich r 99.6 1.4E-15 4.7E-20 127.2 5.9 110 86-196 129-240 (477)
18 3oja_B Anopheles plasmodium-re 99.6 2.9E-15 1E-19 128.7 7.6 75 127-203 250-324 (597)
19 3rfs_A Internalin B, repeat mo 99.6 2E-15 6.7E-20 117.5 5.8 178 8-192 37-218 (272)
20 3v47_A TOLL-like receptor 5B a 99.6 2.7E-15 9.2E-20 124.5 6.8 93 103-197 295-388 (455)
21 3zyi_A Leucine-rich repeat-con 99.6 1.4E-15 4.9E-20 126.4 5.0 180 5-190 92-301 (452)
22 3zyj_A Leucine-rich repeat-con 99.6 1.4E-15 4.7E-20 126.1 4.6 128 6-139 82-215 (440)
23 2id5_A Lingo-1, leucine rich r 99.6 3.5E-15 1.2E-19 124.7 7.1 103 86-189 153-258 (477)
24 3rfs_A Internalin B, repeat mo 99.6 8.7E-16 3E-20 119.5 3.2 184 6-201 57-244 (272)
25 1xku_A Decorin; proteoglycan, 99.6 2.4E-15 8.1E-20 120.0 5.7 184 2-189 65-273 (330)
26 3o6n_A APL1; leucine-rich repe 99.6 2.7E-15 9.3E-20 122.3 5.6 88 101-190 242-329 (390)
27 2z62_A TOLL-like receptor 4, v 99.6 1.5E-15 5.2E-20 118.2 3.7 35 155-190 200-235 (276)
28 4ecn_A Leucine-rich repeat pro 99.5 1.2E-15 4.2E-20 135.5 3.4 132 4-139 440-603 (876)
29 3t6q_A CD180 antigen; protein- 99.5 3.3E-15 1.1E-19 128.3 5.7 195 5-203 318-524 (606)
30 2z80_A TOLL-like receptor 2, v 99.5 2.5E-15 8.5E-20 121.0 4.2 134 3-139 66-206 (353)
31 3oja_B Anopheles plasmodium-re 99.5 4E-15 1.4E-19 127.8 5.5 87 101-190 248-335 (597)
32 2xwt_C Thyrotropin receptor; s 99.5 1.3E-14 4.5E-19 110.6 7.5 187 2-198 24-223 (239)
33 4eco_A Uncharacterized protein 99.5 2.3E-15 7.8E-20 130.3 3.1 132 4-139 239-385 (636)
34 2z62_A TOLL-like receptor 4, v 99.5 4.3E-15 1.5E-19 115.7 4.0 189 2-198 20-218 (276)
35 1p9a_G Platelet glycoprotein I 99.5 4.9E-15 1.7E-19 116.4 4.3 185 8-202 6-194 (290)
36 2ast_B S-phase kinase-associat 99.5 1.5E-15 5.1E-20 121.3 1.4 184 4-189 85-282 (336)
37 3zyi_A Leucine-rich repeat-con 99.5 8.5E-15 2.9E-19 121.7 6.0 133 2-139 67-204 (452)
38 2z80_A TOLL-like receptor 2, v 99.5 1.7E-15 5.7E-20 122.0 1.5 184 1-190 43-233 (353)
39 3v47_A TOLL-like receptor 5B a 99.5 2.2E-14 7.5E-19 119.0 8.1 135 59-196 275-412 (455)
40 3vq2_A TLR4, TOLL-like recepto 99.5 4.5E-15 1.6E-19 127.4 3.9 99 101-201 442-542 (606)
41 3vq2_A TLR4, TOLL-like recepto 99.5 2E-15 6.9E-20 129.6 1.6 134 55-191 420-557 (606)
42 1wwl_A Monocyte differentiatio 99.5 5.6E-15 1.9E-19 117.1 3.7 173 10-189 93-284 (312)
43 1xku_A Decorin; proteoglycan, 99.5 6.6E-15 2.2E-19 117.5 3.9 190 2-201 44-261 (330)
44 3m19_A Variable lymphocyte rec 99.5 1.8E-14 6.1E-19 110.7 5.9 83 55-139 55-139 (251)
45 3zyj_A Leucine-rich repeat-con 99.5 1.6E-14 5.4E-19 119.7 6.0 157 1-165 55-217 (440)
46 4glp_A Monocyte differentiatio 99.5 1.4E-14 4.7E-19 114.7 4.8 179 4-190 107-305 (310)
47 2z81_A CD282 antigen, TOLL-lik 99.5 3.1E-15 1.1E-19 126.9 0.9 180 8-190 46-234 (549)
48 4ecn_A Leucine-rich repeat pro 99.5 2.9E-14 1E-18 126.7 6.7 132 4-139 481-627 (876)
49 2o6q_A Variable lymphocyte rec 99.5 4.1E-14 1.4E-18 109.9 6.6 160 2-166 50-216 (270)
50 4fmz_A Internalin; leucine ric 99.5 1.6E-13 5.4E-18 110.0 9.9 81 103-190 217-298 (347)
51 2ft3_A Biglycan; proteoglycan, 99.5 6.3E-15 2.2E-19 117.7 1.5 42 2-43 67-111 (332)
52 2ft3_A Biglycan; proteoglycan, 99.5 3E-14 1E-18 113.8 5.2 111 2-120 46-160 (332)
53 4fmz_A Internalin; leucine ric 99.5 3.4E-14 1.2E-18 113.9 5.3 175 6-195 149-326 (347)
54 1h6u_A Internalin H; cell adhe 99.5 4.8E-14 1.6E-18 111.6 5.7 172 8-196 37-211 (308)
55 2xwt_C Thyrotropin receptor; s 99.5 3.2E-14 1.1E-18 108.4 4.4 182 1-191 43-238 (239)
56 1h6t_A Internalin B; cell adhe 99.5 5.7E-14 1.9E-18 110.3 5.7 167 8-190 42-211 (291)
57 4ezg_A Putative uncharacterize 99.5 6E-14 2.1E-18 103.9 5.3 149 31-190 41-192 (197)
58 2z81_A CD282 antigen, TOLL-lik 99.4 3.6E-14 1.2E-18 120.4 4.2 184 1-190 17-207 (549)
59 2z7x_B TOLL-like receptor 1, v 99.4 1.4E-13 4.7E-18 116.2 7.5 128 1-139 12-146 (520)
60 1wwl_A Monocyte differentiatio 99.4 7.5E-15 2.6E-19 116.4 -0.3 180 3-190 110-307 (312)
61 1m9s_A Internalin B; cell inva 99.4 1.1E-13 3.8E-18 118.8 6.2 167 8-190 39-208 (605)
62 3o53_A Protein LRIM1, AGAP0063 99.4 4.3E-14 1.5E-18 112.3 3.1 183 10-200 32-234 (317)
63 3m19_A Variable lymphocyte rec 99.4 7.9E-14 2.7E-18 107.1 4.5 160 1-166 26-190 (251)
64 3oja_A Leucine-rich immune mol 99.4 1.6E-14 5.3E-19 121.3 0.6 180 13-201 35-235 (487)
65 1ziw_A TOLL-like receptor 3; i 99.4 1.1E-13 3.9E-18 120.3 5.7 161 1-166 16-182 (680)
66 4ezg_A Putative uncharacterize 99.4 1E-13 3.5E-18 102.7 4.6 148 8-166 40-192 (197)
67 2z63_A TOLL-like receptor 4, v 99.4 5E-14 1.7E-18 119.9 3.1 110 53-165 367-480 (570)
68 2ast_B S-phase kinase-associat 99.4 2.5E-14 8.5E-19 114.2 0.3 182 4-190 110-304 (336)
69 3e6j_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 102.3 6.4 132 2-139 32-167 (229)
70 3j0a_A TOLL-like receptor 5; m 99.4 1.4E-13 4.8E-18 122.6 4.9 183 2-191 17-216 (844)
71 3o53_A Protein LRIM1, AGAP0063 99.4 5.2E-14 1.8E-18 111.8 1.9 189 6-204 52-263 (317)
72 3j0a_A TOLL-like receptor 5; m 99.4 1.9E-13 6.5E-18 121.8 5.3 115 5-121 41-162 (844)
73 2o6s_A Variable lymphocyte rec 99.4 1.6E-13 5.6E-18 102.3 4.2 124 12-139 28-156 (208)
74 1o6v_A Internalin A; bacterial 99.4 9.8E-13 3.3E-17 109.7 8.9 97 86-190 266-364 (466)
75 3oja_A Leucine-rich immune mol 99.4 8.3E-14 2.8E-18 116.9 2.4 191 5-205 51-264 (487)
76 3bz5_A Internalin-J, INLJ; leu 99.4 4.4E-13 1.5E-17 111.6 6.4 170 7-196 37-228 (457)
77 1o6v_A Internalin A; bacterial 99.4 5.1E-13 1.7E-17 111.4 6.8 166 9-190 218-386 (466)
78 3bz5_A Internalin-J, INLJ; leu 99.4 1.2E-12 4.2E-17 108.9 8.7 117 8-139 123-241 (457)
79 2z7x_B TOLL-like receptor 1, v 99.4 3E-13 1E-17 114.1 4.8 36 7-42 40-77 (520)
80 2z63_A TOLL-like receptor 4, v 99.4 7.7E-14 2.6E-18 118.8 1.0 183 9-195 344-534 (570)
81 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.2E-13 1.1E-17 115.1 4.8 130 1-139 43-177 (562)
82 1xeu_A Internalin C; cellular 99.4 4.1E-13 1.4E-17 103.9 4.6 144 7-165 36-182 (263)
83 1h6t_A Internalin B; cell adhe 99.3 1.6E-12 5.4E-17 102.0 7.4 149 3-166 60-211 (291)
84 1ziw_A TOLL-like receptor 3; i 99.3 2E-13 7E-18 118.7 2.3 39 5-43 398-439 (680)
85 1xeu_A Internalin C; cellular 99.3 3.8E-13 1.3E-17 104.1 3.2 164 10-190 17-183 (263)
86 1dce_A Protein (RAB geranylger 99.3 9.9E-14 3.4E-18 118.4 -0.6 179 9-196 346-549 (567)
87 2v9t_B SLIT homolog 2 protein 99.3 1.1E-12 3.8E-17 98.8 5.0 132 3-139 25-160 (220)
88 2ca6_A RAN GTPase-activating p 99.3 1.6E-13 5.6E-18 111.6 0.3 132 7-139 55-224 (386)
89 1m9s_A Internalin B; cell inva 99.3 2.4E-12 8.1E-17 110.6 6.5 149 3-166 57-208 (605)
90 2o6s_A Variable lymphocyte rec 99.3 1.8E-12 6.1E-17 96.6 4.6 158 33-201 27-187 (208)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 6.6E-12 2.3E-16 107.0 7.5 100 86-190 404-508 (562)
92 2ca6_A RAN GTPase-activating p 99.3 4.8E-13 1.6E-17 108.9 0.5 129 9-139 91-252 (386)
93 4glp_A Monocyte differentiatio 99.3 1.9E-12 6.6E-17 102.3 3.5 171 13-190 92-283 (310)
94 3cvr_A Invasion plasmid antige 99.3 4.2E-12 1.4E-16 108.2 5.7 174 2-204 72-255 (571)
95 1dce_A Protein (RAB geranylger 99.2 2.3E-13 7.8E-18 116.1 -2.7 175 2-185 362-566 (567)
96 1jl5_A Outer protein YOPM; leu 99.2 3.1E-12 1E-16 106.5 4.1 122 2-139 24-161 (454)
97 3g06_A SSPH2 (leucine-rich rep 99.2 1.2E-11 4.2E-16 106.5 6.5 15 107-121 181-195 (622)
98 3g06_A SSPH2 (leucine-rich rep 99.2 2.2E-11 7.4E-16 104.9 7.8 59 2-70 53-112 (622)
99 2v70_A SLIT-2, SLIT homolog 2 99.2 5.7E-12 1.9E-16 94.9 3.7 107 30-139 53-161 (220)
100 4ay9_X Follicle-stimulating ho 99.2 1E-11 3.5E-16 99.9 5.0 136 55-196 100-240 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.2 3.8E-11 1.3E-15 90.3 7.4 108 55-165 53-163 (220)
102 2v9t_B SLIT homolog 2 protein 99.2 5.7E-11 1.9E-15 89.4 7.5 128 34-166 32-163 (220)
103 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.5E-16 87.9 4.6 102 33-139 23-128 (168)
104 2xot_A Amphoterin-induced prot 99.1 7.2E-12 2.5E-16 101.2 1.7 83 55-139 84-171 (361)
105 2ell_A Acidic leucine-rich nuc 99.1 2.3E-11 7.7E-16 87.5 4.0 125 10-139 22-155 (168)
106 4g8a_A TOLL-like receptor 4; l 99.1 5.2E-12 1.8E-16 108.4 0.6 132 2-139 44-181 (635)
107 3e6j_A Variable lymphocyte rec 99.1 1.2E-10 4E-15 88.2 7.6 127 59-190 40-170 (229)
108 3goz_A Leucine-rich repeat-con 99.1 1.4E-12 4.8E-17 105.3 -3.2 15 28-42 44-59 (362)
109 2je0_A Acidic leucine-rich nuc 99.1 1.9E-12 6.3E-17 91.4 -3.1 125 33-163 16-148 (149)
110 4ay9_X Follicle-stimulating ho 99.1 1.4E-10 4.8E-15 93.2 7.5 189 2-198 22-220 (350)
111 3ogk_B Coronatine-insensitive 99.1 1.8E-11 6.2E-16 104.6 0.5 54 86-139 271-326 (592)
112 1jl5_A Outer protein YOPM; leu 99.1 2.6E-11 8.8E-16 100.9 1.3 163 5-189 5-183 (454)
113 3ogk_B Coronatine-insensitive 99.1 3.2E-11 1.1E-15 103.1 1.8 63 4-67 285-350 (592)
114 2xot_A Amphoterin-induced prot 99.0 3.1E-10 1.1E-14 91.5 7.2 150 34-190 39-200 (361)
115 4g8a_A TOLL-like receptor 4; l 99.0 7.2E-11 2.4E-15 101.4 3.5 179 7-190 392-578 (635)
116 1z7x_W Ribonuclease inhibitor; 99.0 8.5E-13 2.9E-17 109.6 -8.6 111 8-120 166-297 (461)
117 3goz_A Leucine-rich repeat-con 99.0 1.5E-11 5E-16 99.4 -1.9 133 7-139 45-204 (362)
118 2je0_A Acidic leucine-rich nuc 99.0 8.9E-11 3E-15 82.7 1.7 124 11-139 16-148 (149)
119 1z7x_W Ribonuclease inhibitor; 99.0 7.4E-12 2.5E-16 103.9 -4.9 133 5-139 106-264 (461)
120 1ds9_A Outer arm dynein; leuci 99.0 1.2E-12 4.2E-17 96.9 -8.8 123 10-139 16-148 (198)
121 2p1m_B Transport inhibitor res 99.0 1.4E-10 4.7E-15 99.2 2.3 69 130-202 455-526 (594)
122 2wfh_A SLIT homolog 2 protein 99.0 1.9E-09 6.7E-14 79.3 7.8 103 86-190 32-137 (193)
123 1w8a_A SLIT protein; signaling 98.9 1.8E-09 6.3E-14 79.3 7.3 103 86-190 30-137 (192)
124 1w8a_A SLIT protein; signaling 98.9 4.7E-10 1.6E-14 82.5 4.0 119 15-139 11-134 (192)
125 1ds9_A Outer arm dynein; leuci 98.9 8.4E-12 2.9E-16 92.3 -5.5 152 27-185 11-180 (198)
126 1a9n_A U2A', U2A'; complex (nu 98.9 6.3E-11 2.2E-15 85.9 -1.3 127 31-166 16-151 (176)
127 1a9n_A U2A', U2A'; complex (nu 98.9 1.1E-10 3.9E-15 84.6 -0.1 128 56-190 16-151 (176)
128 3cvr_A Invasion plasmid antige 98.9 1E-09 3.4E-14 93.6 5.4 161 13-203 60-230 (571)
129 4b8c_D Glucose-repressible alc 98.9 8.5E-10 2.9E-14 96.8 4.0 105 29-139 219-324 (727)
130 4b8c_D Glucose-repressible alc 98.9 2.6E-09 8.9E-14 93.7 6.5 102 86-191 225-328 (727)
131 2wfh_A SLIT homolog 2 protein 98.9 3E-09 1E-13 78.3 5.7 118 16-139 14-134 (193)
132 2o6r_A Variable lymphocyte rec 98.8 2.7E-08 9.2E-13 71.9 7.9 103 86-190 29-135 (177)
133 2o6r_A Variable lymphocyte rec 98.7 3.8E-08 1.3E-12 71.1 7.9 82 56-139 49-132 (177)
134 2p1m_B Transport inhibitor res 98.7 7.6E-10 2.6E-14 94.5 -1.6 179 9-191 286-493 (594)
135 2r9u_A Variable lymphocyte rec 98.6 1.3E-07 4.5E-12 68.2 8.4 54 86-139 34-89 (174)
136 2r9u_A Variable lymphocyte rec 98.6 5.1E-08 1.7E-12 70.5 4.8 79 59-139 33-113 (174)
137 3g39_A Variable lymphocyte rec 98.5 1.2E-07 4E-12 68.2 6.0 99 61-166 11-113 (170)
138 3g39_A Variable lymphocyte rec 98.5 5E-07 1.7E-11 64.9 7.4 79 59-139 30-110 (170)
139 3e4g_A ATP synthase subunit S, 98.3 9.5E-08 3.2E-12 68.8 1.3 98 107-204 61-164 (176)
140 3un9_A NLR family member X1; l 98.3 1E-08 3.6E-13 83.0 -4.9 34 106-139 154-191 (372)
141 2ifg_A High affinity nerve gro 98.2 3.4E-06 1.2E-10 67.2 6.7 94 24-121 22-117 (347)
142 2ra8_A Uncharacterized protein 98.2 7.3E-07 2.5E-11 71.8 2.6 155 30-190 135-318 (362)
143 2ifg_A High affinity nerve gro 98.1 3E-06 1E-10 67.6 4.5 59 80-139 27-88 (347)
144 2ra8_A Uncharacterized protein 98.0 3.4E-06 1.1E-10 68.0 3.8 157 33-193 106-292 (362)
145 3un9_A NLR family member X1; l 98.0 5.8E-07 2E-11 72.7 -1.4 154 11-166 71-250 (372)
146 3e4g_A ATP synthase subunit S, 97.9 1.2E-05 4.2E-10 57.8 4.9 83 35-118 62-150 (176)
147 3sb4_A Hypothetical leucine ri 97.8 2.8E-05 9.5E-10 61.6 6.5 96 86-185 227-327 (329)
148 1io0_A Tropomodulin; LRR prote 97.8 5.5E-06 1.9E-10 60.2 1.2 112 26-139 28-159 (185)
149 3sb4_A Hypothetical leucine ri 97.6 6.8E-05 2.3E-09 59.3 5.1 104 32-139 200-305 (329)
150 4fdw_A Leucine rich hypothetic 97.6 9.4E-05 3.2E-09 60.3 5.7 126 55-189 222-355 (401)
151 1io0_A Tropomodulin; LRR prote 97.5 1.4E-05 4.7E-10 58.1 -0.5 89 49-138 26-128 (185)
152 4fdw_A Leucine rich hypothetic 97.4 0.00019 6.5E-09 58.5 5.2 99 86-187 227-331 (401)
153 3rw6_A Nuclear RNA export fact 97.1 0.00017 5.8E-09 55.5 2.1 63 56-120 167-233 (267)
154 3rw6_A Nuclear RNA export fact 96.7 0.00098 3.4E-08 51.2 3.3 81 31-113 167-257 (267)
155 3rfe_A Platelet glycoprotein I 93.6 0.07 2.4E-06 36.0 3.8 33 107-139 31-63 (130)
156 1pgv_A TMD-1, tropomodulin TMD 91.5 0.049 1.7E-06 39.7 0.8 109 30-139 37-165 (197)
157 4fs7_A Uncharacterized protein 91.3 0.095 3.3E-06 42.2 2.4 168 8-187 204-374 (394)
158 4gt6_A Cell surface protein; l 86.3 1.3 4.4E-05 35.5 5.7 105 54-164 260-366 (394)
159 4gt6_A Cell surface protein; l 85.5 0.33 1.1E-05 38.9 1.9 104 30-139 261-365 (394)
160 4fs7_A Uncharacterized protein 84.5 0.88 3E-05 36.4 3.9 125 30-164 249-375 (394)
161 4h09_A Hypothetical leucine ri 84.2 2.4 8.2E-05 33.5 6.4 53 86-138 264-317 (379)
162 3rfe_A Platelet glycoprotein I 81.7 1.4 4.9E-05 29.3 3.6 39 83-121 29-69 (130)
163 4h09_A Hypothetical leucine ri 80.4 1.4 4.9E-05 34.8 3.8 104 30-139 236-341 (379)
164 1pgv_A TMD-1, tropomodulin TMD 65.7 1.9 6.6E-05 31.2 1.0 107 11-119 40-169 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=3e-22 Score=160.22 Aligned_cols=201 Identities=21% Similarity=0.179 Sum_probs=163.2
Q ss_pred CcccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc-
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ- 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~- 78 (219)
+..+|++++++++|++|++.++ ...+|..++++++|++|+++. +....++..+.++++|++|++++|......+..
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~--n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR--NPLRALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES--CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC--CccccCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 4578999999999999999988 447788899999999999994 333366677899999999999998765544311
Q ss_pred -------cCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEc
Q 042636 79 -------SLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFE 150 (219)
Q Consensus 79 -------~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 150 (219)
.+..++ +|++|++++ .++.+|.++..+++|+.|++++|.+...+ ..+..+++|+.|+++.+.....++..
T Consensus 171 ~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 171 ASTDASGEHQGLV-NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEEC-CCCEEEST-TCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC-GGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hhccchhhhccCC-CCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc-hhhccCCCCCEEECcCCcchhhhHHH
Confidence 122355 999999998 78889999999999999999999998754 46889999999999943333334555
Q ss_pred cCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhhhh
Q 042636 151 AGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILDQ 205 (219)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~~ 205 (219)
.+.+++|+.|++.++...+.++...+.+++|+.|++.+|+..+.+|.++.++.+.
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 6678999999999888777776666789999999999999999999998887764
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=3.8e-19 Score=142.20 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=146.0
Q ss_pred CcccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHH---------hccCCCCeEEEEecC
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALI---------ANLENLESLTVLMAS 70 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l---------~~l~~L~~L~l~~~~ 70 (219)
+..+|..++++++|++|++.++ ...+|..++++++|++|+++. +...+.++..+ .++++|++|++++|.
T Consensus 116 l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 116 LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA-CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194 (328)
T ss_dssp CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE-ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC
T ss_pred ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC-CCCccccChhHhhccchhhhccCCCCCEEECcCCC
Confidence 3568999999999999999988 457788899999999999995 23333333333 459999999999987
Q ss_pred CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEE
Q 042636 71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHF 149 (219)
Q Consensus 71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 149 (219)
.... + ..+..++ +|++|++++ .++.+|..+..+++|+.|++++|.+.+.....++.+++|+.|+++++.....++.
T Consensus 195 l~~l-p-~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 195 IRSL-P-ASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp CCCC-C-GGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT
T ss_pred cCcc-h-HhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch
Confidence 7633 2 3455566 999999998 7888998899999999999999988877677889999999999984333333444
Q ss_pred ccCCCcccceeeecccCCcceEEEcCCcccccceeeeec
Q 042636 150 EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGP 188 (219)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 188 (219)
....+++|+.|++.+++..+.++...+.+++|+.+.+..
T Consensus 272 ~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 456789999999999888887776667788888887764
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=2.4e-18 Score=136.67 Aligned_cols=190 Identities=17% Similarity=0.149 Sum_probs=106.5
Q ss_pred ccCCccccccccccccccc-c--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 3 KVHRGLGSLMDLQKLSIIE-A--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~-~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
.+|..++++++|++|++.+ + ...+|..++++++|++|+++. +...+..+..+.++++|++|++++|......+ ..
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~ 144 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PS 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEECCGGGGGCTTCCEEECCSSEEESCCC-GG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-hH
Confidence 4677788888888888773 4 445666777888888888874 22233444556677777777777665432221 23
Q ss_pred CCCcccCccEEEecc-cCC-CCChhhhcCC-CccEEEEeeecCC-----------------------CCCCccccCCCcc
Q 042636 80 LSSPPQYLQRLYLTG-NMK-KLPDWIFKLK-NVIRLGLDLSGLT-----------------------EDPLRVPHALPNL 133 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~-~L~~L~l~~~~~~-----------------------~~~~~~l~~l~~L 133 (219)
+..++ +|++|++++ .++ .+|..+..+. +|+.|++++|.+. ......+..+++|
T Consensus 145 ~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCC
Confidence 33344 666666665 444 3555555554 5666666555544 3333344555566
Q ss_pred ceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchh
Q 042636 134 LELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIF 197 (219)
Q Consensus 134 ~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~ 197 (219)
+.|+++ +...+. +. ....+++|++|++.++...+.++...+.+++|+.|++.++.-.+.+|.
T Consensus 224 ~~L~L~~N~l~~~-~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 224 QKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp SEEECCSSEECCB-GG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CEEECCCCceeee-cC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 666655 322211 11 123456677777665442223333334567777777776643334444
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=3.3e-18 Score=135.91 Aligned_cols=189 Identities=15% Similarity=0.096 Sum_probs=130.3
Q ss_pred ccccccccccc--Ch--HhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 12 MDLQKLSIIEA--DS--QVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 12 ~~L~~L~~~~~--~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
.+++.|++.++ .+ .+|..++++++|++|+++..+...+.++..++++++|++|++++|......+ ..+..++ +|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~-~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK-TL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT-TC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCCC-CC
Confidence 57888888877 44 6888999999999999982123334556678999999999999987753332 3455566 99
Q ss_pred cEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCC-ccceeeec-cccCCc------------------
Q 042636 88 QRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALP-NLLELRLG-GTYNYK------------------ 145 (219)
Q Consensus 88 ~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~-~~~~~~------------------ 145 (219)
++|++++ .++ .+|..+..+++|++|++++|.+.+..+..+..++ +|+.|+++ +...+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N 207 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCC
Confidence 9999998 666 5888899999999999999998755556677777 89999887 332210
Q ss_pred eEE----EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 146 LFH----FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 146 ~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
.+. .....+++|+.|++.++. +.......+.+++|+.|++.++.-.+.+|.++..+.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred cccCcCCHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 010 012335566666666543 221111234568888888888765445666655543
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=1.5e-16 Score=124.51 Aligned_cols=182 Identities=20% Similarity=0.093 Sum_probs=98.7
Q ss_pred cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++ ..++++|++.++ ...++ ..++++++|++|+++. +......+..+.++++|++|++++|..........
T Consensus 24 ~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 24 QAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp SSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred ccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 3455544 346677777666 22222 3466777777777763 22222223455667777777777765222222233
Q ss_pred CCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEE-ccCCCcc
Q 042636 80 LSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHF-EAGWFPK 156 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 156 (219)
+...+ +|++|++++ .++.+ |..+..+++|++|++++|.+...+...+..+++|+.|+++.+... .+.. ....+++
T Consensus 101 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~ 178 (285)
T 1ozn_A 101 FHGLG-RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHS 178 (285)
T ss_dssp TTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTT
T ss_pred hcCCc-CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccc
Confidence 44444 777777766 55554 444566677777777777766655555666777777777622111 1111 1334566
Q ss_pred cceeeecccCCcceE-EEcCCcccccceeeeecC
Q 042636 157 LQILTLFDFVAVKSV-IIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 157 L~~L~l~~~~~~~~~-~~~~~~~p~L~~L~l~~~ 189 (219)
|+.|++.++. +..+ +...+.+++|+.|++.++
T Consensus 179 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 179 LDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred cCEEECCCCc-ccccCHhHccCcccccEeeCCCC
Confidence 6666666543 3332 112234566666666665
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1e-16 Score=125.43 Aligned_cols=187 Identities=20% Similarity=0.177 Sum_probs=137.5
Q ss_pred cccC-Ccccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccccc
Q 042636 2 AKVH-RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDL 77 (219)
Q Consensus 2 ~~lP-~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 77 (219)
..+| ..++++++|++|++.++ ....+..++++++|++|+++. +.....+ +..+.++++|++|++++|......+
T Consensus 45 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 122 (285)
T 1ozn_A 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP- 122 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-
T ss_pred CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC-CCCccccCHHHhcCCcCCCEEECCCCcCCEECH-
Confidence 3455 45889999999999887 333466788999999999994 2213332 4567889999999999987654422
Q ss_pred ccCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCc
Q 042636 78 QSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFP 155 (219)
Q Consensus 78 ~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 155 (219)
..+...+ +|++|++++ .++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++.+............++
T Consensus 123 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 201 (285)
T 1ozn_A 123 GLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201 (285)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcc
Confidence 3455555 999999998 7777664 477899999999999999876666788999999999983332222223345678
Q ss_pred ccceeeecccCCcceEEEc-CCcccccceeeeecCCCC
Q 042636 156 KLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLW 192 (219)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l 192 (219)
+|+.|++.++. +..+... .+.+++|+.|++.+++-.
T Consensus 202 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 202 RLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence 99999999764 4544322 356899999999987643
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=1.5e-16 Score=140.40 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=91.2
Q ss_pred ccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 3 KVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
.+|..++++++|++|++.++ .+..|..++++++|+.|+++. +...+.++..+.++++|+.|++++|......+ ..+
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l 486 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL-NMLEGEIPQELMYVKTLETLILDFNDLTGEIP-SGL 486 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCceEEEecCCcccCcCC-HHH
Confidence 35666777777777777766 445666677777777777773 33334455566777778888887776654332 234
Q ss_pred CCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 81 SSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
...+ +|++|++++ .+. .+|.++..+++|+.|++++|.+.+..+..++.+++|+.|+++
T Consensus 487 ~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 487 SNCT-NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp GGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred hcCC-CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 4444 788888876 555 477777778888888888887765555667777888877776
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=8.7e-16 Score=125.29 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=46.4
Q ss_pred ccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 127 PHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 127 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
+..+++|+.|+++.+............+++|+.|++.++. +..++...+.+|+|+.|++.+| .+..+|.++..+.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~ 318 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD 318 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCC-cceecCccccccC
Confidence 4455666666666222222122234557788888888643 5666655566888999999887 4667776665443
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=5.5e-16 Score=120.46 Aligned_cols=182 Identities=23% Similarity=0.223 Sum_probs=130.2
Q ss_pred CcccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEecCCCccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMASKDEILDL 77 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~ 77 (219)
++.+|.++. .++++|++.++ ...++ ..++++++|++|+++. +....+.. .+.++++|++|++++|...... .
T Consensus 28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~ 102 (270)
T 2o6q_A 28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALP-I 102 (270)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-T
T ss_pred CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCC-H
Confidence 346777665 57889998877 33333 3588899999999984 22222222 3477899999999998765432 2
Q ss_pred ccCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636 78 QSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF 154 (219)
Q Consensus 78 ~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~ 154 (219)
..+...+ +|++|++++ .++.++. .+..+++|++|++++|.+...+...+..+++|+.|+++ +....- .......+
T Consensus 103 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 180 (270)
T 2o6q_A 103 GVFDQLV-NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKL 180 (270)
T ss_dssp TTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC
T ss_pred hHccccc-CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccC
Confidence 3445555 999999998 7777654 46789999999999999988777778899999999998 433221 11123457
Q ss_pred cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
++|+.|++.++. +..++.. .+.+++|+.|++.+++
T Consensus 181 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 181 TELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 899999998754 5544332 3457899999999876
No 10
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.61 E-value=4.5e-17 Score=128.67 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 102 WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
++..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 33444444444444444443333334444444444444
No 11
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=2.6e-16 Score=124.32 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=64.5
Q ss_pred cccCCcccccccccccccccc-ChHhHHH-Hhcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKE-LMKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~-l~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
+.+|.++. .++++|++.++ ...++.+ ++++++|++|+++. .....+..+..+.++++|++|++++|...... .
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~--~ 95 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--S 95 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--E
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh--h
Confidence 34555443 45666666655 3334433 46666677776663 11111111233445666666666665443221 1
Q ss_pred cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+...+ +|++|++++ .++.++. .+..+++|++|++++|.+.......+..+++|+.|+++
T Consensus 96 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 96 NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp EEETCT-TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred hcCCCC-CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 223333 566666654 3443332 34455555555555555544333444455555555554
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=1.8e-16 Score=139.84 Aligned_cols=197 Identities=17% Similarity=0.147 Sum_probs=87.3
Q ss_pred cCCcccccccccccccccc--ChHhHHH-HhcccccceeeeeeCCCChhHHHHHHhccC-CCCeEEEEecCCCccccccc
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQVLKE-LMKLRQLRKLGIRPKNGNGKDVCALIANLE-NLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~ 79 (219)
+|..++++++|++|++.++ .+.+|.+ ++++++|++|+++. +...+.++..+.++. +|++|++++|......+ ..
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~-~~ 387 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-NEFSGELPESLTNLSASLLTLDLSSNNFSGPIL-PN 387 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS-SEEEECCCTTHHHHTTTCSEEECCSSEEEEECC-TT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC-CccCccccHHHHhhhcCCcEEEccCCCcCCCcC-hh
Confidence 3444555555555555544 2234433 55556666665552 111112223333333 45555554443221111 11
Q ss_pred CCC--cccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCC----------
Q 042636 80 LSS--PPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNY---------- 144 (219)
Q Consensus 80 ~~~--~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~---------- 144 (219)
+.. .+ +|++|++++ .+. .+|.++..+++|+.|++++|.+.+..+..+..+++|+.|+++ +...+
T Consensus 388 ~~~~~~~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 466 (768)
T 3rgz_A 388 LCQNPKN-TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466 (768)
T ss_dssp TTCSTTC-CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhcccC-CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 111 12 455555554 332 244455555555555555555444333444444455555444 22111
Q ss_pred -------------ceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 145 -------------KLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 145 -------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
..++.....+++|+.|++.++...+.++...+.+++|+.|++++|.....+|.++..+.
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 11222223345566666655443323333334556666666666654445555554443
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.3e-15 Score=119.68 Aligned_cols=178 Identities=17% Similarity=0.093 Sum_probs=103.6
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++. .++++|++.++ ....+..+.++++|++|+++. +....+.. .+.+++|++|++++|...... ..
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~--~~ 95 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR--AELTKLQV-DGTLPVLGTLDLSHNQLQSLP--LL 95 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT--SCCCEEEC-CSCCTTCCEEECCSSCCSSCC--CC
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC--CccCcccC-CCCCCcCCEEECCCCcCCcCc--hh
Confidence 44565553 46666766666 233344566777777777763 11111111 155677777777776554321 22
Q ss_pred CCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEE-ccCCCc
Q 042636 80 LSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHF-EAGWFP 155 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~-~~~~~~ 155 (219)
+...+ +|++|++++ .++.+| ..+..+++|+.|++++|.+...+...+..+++|+.|+++ +... . +.. ....++
T Consensus 96 ~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~-l~~~~~~~l~ 172 (290)
T 1p9a_G 96 GQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E-LPAGLLNGLE 172 (290)
T ss_dssp TTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-C-CCTTTTTTCT
T ss_pred hccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-c-cCHHHhcCcC
Confidence 33344 777777776 666655 446667777777777777776655666677777777776 3332 1 211 123466
Q ss_pred ccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636 156 KLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 156 ~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+|+.|++.++. +..++......++|+.+.+.+++
T Consensus 173 ~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 173 NLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 77777777543 45444444445667777777654
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.58 E-value=5.7e-17 Score=140.29 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=64.0
Q ss_pred cCCcccccccccccccccc--ChH-----------------hHHHHh--cccccceeeeeeCCCChhHHHHHHhccCCCC
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQ-----------------VLKELM--KLRQLRKLGIRPKNGNGKDVCALIANLENLE 62 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 62 (219)
+|.+++++++|++|++.++ .+. +|++++ ++++|++|+++. +...+.++..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN-CPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC-CTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC-CcCCccChHHHhcCCCCC
Confidence 5555666666666665555 222 555555 566666666652 222334444455555555
Q ss_pred eEEEEecC-CCc-ccccccCCC------cccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636 63 SLTVLMAS-KDE-ILDLQSLSS------PPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALP 131 (219)
Q Consensus 63 ~L~l~~~~-~~~-~~~~~~~~~------~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 131 (219)
+|++++|. ... ..+ ..+.. .+ +|++|++++ .++.+|. ++..+++|+.|++++|.+.+... .+..++
T Consensus 277 ~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~-~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLK-DDWQALADAPVGE-KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHH-HHHHHHHHSGGGG-TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred EEECcCCCCCccccch-HHHHhhhccccCC-CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 55555554 322 111 11111 12 555555554 4445555 45555555555555555542111 344444
Q ss_pred ccceeeec
Q 042636 132 NLLELRLG 139 (219)
Q Consensus 132 ~L~~L~l~ 139 (219)
+|+.|+++
T Consensus 354 ~L~~L~L~ 361 (636)
T 4eco_A 354 KLASLNLA 361 (636)
T ss_dssp EESEEECC
T ss_pred CCCEEECC
Confidence 55555444
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.5e-15 Score=119.00 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=91.0
Q ss_pred cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
++..+++|++|++.++ ...++. ++++++|++|+++. +....+ ..+.++++|++|++++|..... +.+..++
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~--n~l~~~-~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~- 129 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG--NPLKNV-SAIAGLQSIKTLDLTSTQITDV---TPLAGLS- 129 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS--CCCSCC-GGGTTCTTCCEEECTTSCCCCC---GGGTTCT-
T ss_pred hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC--CcCCCc-hhhcCCCCCCEEECCCCCCCCc---hhhcCCC-
Confidence 3556666666666655 222222 56666666666663 111111 2355666666666666554332 2233444
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|++|++++ .++.++. +..+++|+.|++++|.+...+ .+..+++|+.|+++ +.... +. ....+++|+.|++.
T Consensus 130 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD--IS-PLASLPNLIEVHLK 203 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECT
T ss_pred CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh--hhcCCCCCCEEECCCCccCc--Ch-hhcCCCCCCEEEcc
Confidence 666666665 5555543 556666777777666665532 25666777777766 32221 11 13345667777776
Q ss_pred ccCCcceEEEcCCcccccceeeeecCC
Q 042636 164 DFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
++. +..+. +...+++|+.|++.+++
T Consensus 204 ~N~-l~~~~-~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 204 NNQ-ISDVS-PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TSC-CCBCG-GGTTCTTCCEEEEEEEE
T ss_pred CCc-cCccc-cccCCCCCCEEEccCCe
Confidence 543 33332 23456777777776653
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=2.8e-16 Score=134.97 Aligned_cols=196 Identities=19% Similarity=0.103 Sum_probs=96.5
Q ss_pred ccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccc-cc
Q 042636 3 KVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILD-LQ 78 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~ 78 (219)
.+|++++++++|++|++.++ ....+..++++++|++|+++. +.....++ ..+.++++|++|++++|....... ..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 370 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS-CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC-CCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence 34444445555555554444 222233344455555555542 11111111 123455556666655554433221 12
Q ss_pred cCCCcccCccEEEecc-cCCC-CChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEEccCCC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHFEAGWF 154 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~ 154 (219)
.+...+ +|++|++++ .+.. .|..+..+++|+.|++++|.+.... ...+..+++|+.|+++ +..... .......+
T Consensus 371 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 448 (606)
T 3t6q_A 371 QLRNLS-HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGL 448 (606)
T ss_dssp TTTTCT-TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTC
T ss_pred hcccCC-CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCC
Confidence 233334 666666665 3433 3445556666777777666665432 2335667777777776 222211 12223456
Q ss_pred cccceeeecccCCcceEEE---cCCcccccceeeeecCCCCCcchhHHhh
Q 042636 155 PKLQILTLFDFVAVKSVII---EKGAMPDIRELGIGPFPLWSMYIFLTDH 201 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~---~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 201 (219)
++|+.|++.++...+.... ..+.+++|+.|++.+|.-....|..+..
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc
Confidence 7888888876553221111 1345788888888887533333444443
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=1.4e-15 Score=127.16 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=49.2
Q ss_pred CccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|++|++++ .+..+ +..+..+++|+.|++++|.+...+...+..+++|+.|+++.+............+++|+.|++.
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 444444444 33322 2233444555555555554444333344455555555554111111001112334566666666
Q ss_pred ccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636 164 DFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
++...+.++......++|+.|++.+| .+..+|
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~ 240 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP 240 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESS-CCCSCC
T ss_pred CCccccccCcccccCccccEEECcCC-cccccC
Confidence 55544444333333446666776665 344444
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=2.9e-15 Score=128.68 Aligned_cols=75 Identities=12% Similarity=0.033 Sum_probs=47.4
Q ss_pred ccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 127 PHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 127 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
+..+++|+.|+++.+......+...+.+++|+.|++.++. +..++...+.+|+|+.|++++|. +..+|.++..+.
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~ 324 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD 324 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCC
Confidence 4556677777776322222222334567888888888643 56666555668889999998874 556776665443
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=2e-15 Score=117.49 Aligned_cols=178 Identities=21% Similarity=0.221 Sum_probs=125.3
Q ss_pred cccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 8 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
...+.+|++|++.++.....+.++.+++|++|+++. +....+ ..+.++++|++|++++|......+ ..+..++ +|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~--n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGG--NKLHDI-SALKELTNLTYLILTGNQLQSLPN-GVFDKLT-NL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTT--SCCCCC-GGGTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCC--CCCCCc-hhhcCCCCCCEEECCCCccCccCh-hHhcCCc-CC
Confidence 455677888887776322334578899999999984 222222 367889999999999886654322 3344555 99
Q ss_pred cEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 88 QRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 88 ~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++|+.|+++ +... .........+++|+.|++.+
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCC
Confidence 9999988 77776544 6788999999999999887766678889999999998 4333 21111235678999999987
Q ss_pred cCCcceEEEc-CCcccccceeeeecCCCC
Q 042636 165 FVAVKSVIIE-KGAMPDIRELGIGPFPLW 192 (219)
Q Consensus 165 ~~~~~~~~~~-~~~~p~L~~L~l~~~~~l 192 (219)
+. +..+... .+.+++|+.|++.+++-.
T Consensus 191 N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 191 NQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-CCccCHHHHhCCcCCCEEEccCCCcc
Confidence 54 4444322 356899999999887543
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=2.7e-15 Score=124.54 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=42.7
Q ss_pred hhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceE-EEcCCccccc
Q 042636 103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV-IIEKGAMPDI 181 (219)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~p~L 181 (219)
+..+++|+.|++++|.+...+...+..+++|+.|+++.+............+++|+.|++.++. +..+ +...+.+++|
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccChhhccccccc
Confidence 3344445555555554444333344455555555555222111111122345566666666543 3332 1123346666
Q ss_pred ceeeeecCCCCCcchh
Q 042636 182 RELGIGPFPLWSMYIF 197 (219)
Q Consensus 182 ~~L~l~~~~~l~~~~~ 197 (219)
+.|+++++ ++..+|.
T Consensus 374 ~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 374 KELALDTN-QLKSVPD 388 (455)
T ss_dssp CEEECCSS-CCSCCCT
T ss_pred cEEECCCC-ccccCCH
Confidence 77777664 3444443
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.56 E-value=1.4e-15 Score=126.39 Aligned_cols=180 Identities=18% Similarity=0.109 Sum_probs=91.0
Q ss_pred CCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636 5 HRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQSLS 81 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (219)
|+.++++++|++|++.++ ....+..+.++++|++|+++. +....+ ...+.++++|++|++++|....... ..+.
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 168 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD--NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-YAFN 168 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-TTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC--CcCCccChhhhcccCCCCEEECCCCCcceeCH-hHHh
Confidence 456788888888888776 333335577788888888874 222222 2235667777777777765543211 2233
Q ss_pred CcccCccEEEec-------------------------c-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccce
Q 042636 82 SPPQYLQRLYLT-------------------------G-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLE 135 (219)
Q Consensus 82 ~~~~~L~~L~l~-------------------------~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 135 (219)
..+ +|++|+++ + .++.+| .+..+++|+.|++++|.+.......+..+++|+.
T Consensus 169 ~l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 169 RVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp TCT-TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred cCC-cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCE
Confidence 333 55555554 3 333333 2334445555555555554443444555555555
Q ss_pred eeeccccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 136 LRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 136 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
|+++++............+++|+.|++.++. +..++.. ...+++|+.|++.+++
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 5554221111111112344566666665432 3332211 1235666666666554
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=126.09 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=67.1
Q ss_pred Ccccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCC
Q 042636 6 RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSS 82 (219)
Q Consensus 6 ~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 82 (219)
..++++++|++|++.++ ....+..+.++++|++|+++. +....+. ..+.++++|++|++++|......+ ..+..
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~ 158 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-YAFNR 158 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS--SCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-TTTTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC--CcCCeeCHhHhhccccCceeeCCCCcccccCH-HHhhh
Confidence 56788888888888877 333335577788888888874 2222222 235667777777777765433221 22333
Q ss_pred cccCccEEEecc--cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 83 PPQYLQRLYLTG--NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 83 ~~~~L~~L~l~~--~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+ +|++|++++ .+..++. .+..+++|+.|++++|.+... ..+..+++|+.|+++
T Consensus 159 l~-~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 159 IP-SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLS 215 (440)
T ss_dssp CT-TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECT
T ss_pred Cc-ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--cccCCCcccCEEECC
Confidence 33 555555543 2222222 234444455555544444332 123344444444444
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.56 E-value=3.5e-15 Score=124.71 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=47.5
Q ss_pred CccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|++|++++ .++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++.+.....+........+|+.|++.
T Consensus 153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECc
Confidence 555555555 4444443 24455556666665555554434445555556655555222112122111222355555555
Q ss_pred ccCCcceEEE-cCCcccccceeeeecC
Q 042636 164 DFVAVKSVII-EKGAMPDIRELGIGPF 189 (219)
Q Consensus 164 ~~~~~~~~~~-~~~~~p~L~~L~l~~~ 189 (219)
++. +..++. ..+.+++|+.|++.++
T Consensus 233 ~n~-l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 233 HCN-LTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp SSC-CCSCCHHHHTTCTTCCEEECCSS
T ss_pred CCc-ccccCHHHhcCccccCeeECCCC
Confidence 432 332221 1233555555555554
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=8.7e-16 Score=119.47 Aligned_cols=184 Identities=21% Similarity=0.154 Sum_probs=132.5
Q ss_pred Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636 6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP 84 (219)
Q Consensus 6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (219)
++++.+++|++|++.++ ... ...++++++|++|+++. +...+.....+.++++|++|++++|......+ ..+..++
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~ 133 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLT 133 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred cccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCCcCCccCH-HHhccCC
Confidence 35888999999999888 222 34788999999999984 22222222346889999999999987654322 3345556
Q ss_pred cCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636 85 QYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 85 ~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~ 161 (219)
+|++|++++ .++.++.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +...+. .......+++|+.|+
T Consensus 134 -~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 134 -NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIW 211 (272)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEE
T ss_pred -CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhCCcCCCEEE
Confidence 999999998 77776654 5789999999999999988766778899999999998 444321 222235688999999
Q ss_pred ecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhh
Q 042636 162 LFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDH 201 (219)
Q Consensus 162 l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 201 (219)
+.+++. .+.+|.|+.+.+..+.....+|.++..
T Consensus 212 l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 212 LHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccc
Confidence 987653 234677888877766555555554443
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=2.4e-15 Score=120.05 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=86.9
Q ss_pred cccCC-cccccccccccccccc--ChHhHHHHhcccccceeeeee-C-------------------CCChhHHHHHHhcc
Q 042636 2 AKVHR-GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP-K-------------------NGNGKDVCALIANL 58 (219)
Q Consensus 2 ~~lP~-~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~-~-------------------~~~~~~~~~~l~~l 58 (219)
..+|. .++++++|++|++.++ ....+..++++++|++|+++. . +.........+.++
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 144 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCC
Confidence 34444 4677777777777766 223355666777777777764 0 00111122345666
Q ss_pred CCCCeEEEEecCCCcc-cccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 ENLESLTVLMASKDEI-LDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
++|++|++++|..... .....+...+ +|++|++++ .++.+|..+. ++|+.|++++|.+...+...+..+++|+.|
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred ccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 6777777766654321 1122233333 566666655 4444443322 455555555555444333444555555555
Q ss_pred eeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636 137 RLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 189 (219)
+++.+............+++|+.|++.++. +..++.....+++|+.|++.++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 554211111000012234455555555432 3333222333455555555543
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=2.7e-15 Score=122.34 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=62.5
Q ss_pred hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccc
Q 042636 101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPD 180 (219)
Q Consensus 101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~ 180 (219)
.++..+++|+.|++++|.+.......+..+++|+.|+++.+.. ..+......+++|+.|++.++. +..++...+.+++
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-ceecCccccccCc
Confidence 3566788899999999888776667788999999999983322 2244444568899999998754 4444333345677
Q ss_pred cceeeeecCC
Q 042636 181 IRELGIGPFP 190 (219)
Q Consensus 181 L~~L~l~~~~ 190 (219)
|+.|++.+++
T Consensus 320 L~~L~L~~N~ 329 (390)
T 3o6n_A 320 LENLYLDHNS 329 (390)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888877764
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=1.5e-15 Score=118.18 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.2
Q ss_pred cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
.+|+.|++.++. ++.++.. .+.+++|+.|++.+++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 367788887644 4444322 2457888888888544
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.2e-15 Score=135.49 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=65.8
Q ss_pred cCCcccccccccccccccc--Ch-----------------HhHHHHh--cccccceeeeeeCCCChhHHHHHHhccCCCC
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DS-----------------QVLKELM--KLRQLRKLGIRPKNGNGKDVCALIANLENLE 62 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 62 (219)
+|.+++++++|++|++.++ .+ .+|.+++ ++++|+.|+++. +...+.++..++++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~-N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN-CPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES-CTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC-CCCCccChHHHhCCCCCC
Confidence 5556666666666666555 22 2555554 666666666652 223334444555555566
Q ss_pred eEEEEecC-CCc-ccc--cc----cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636 63 SLTVLMAS-KDE-ILD--LQ----SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALP 131 (219)
Q Consensus 63 ~L~l~~~~-~~~-~~~--~~----~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 131 (219)
.|++++|. ... ..+ +. .+...+ +|+.|++++ .++.+|. ++..+++|+.|++++|.+...+ .++.++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~-~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGP-KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTT-TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccC-CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCC
Confidence 66655554 322 111 11 122222 555555554 4445555 4555555555555555554221 445555
Q ss_pred ccceeeec
Q 042636 132 NLLELRLG 139 (219)
Q Consensus 132 ~L~~L~l~ 139 (219)
+|+.|+++
T Consensus 596 ~L~~L~Ls 603 (876)
T 4ecn_A 596 KLTDLKLD 603 (876)
T ss_dssp EESEEECC
T ss_pred cceEEECc
Confidence 55555554
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=3.3e-15 Score=128.28 Aligned_cols=195 Identities=19% Similarity=0.141 Sum_probs=117.6
Q ss_pred CCcccccccccccccccc--ChHhHH-HHhcccccceeeeeeCCCChhH--HHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 5 HRGLGSLMDLQKLSIIEA--DSQVLK-ELMKLRQLRKLGIRPKNGNGKD--VCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
|..++++++|++|++.++ ...++. .++++++|++|+++. +..... .+..+.++++|++|++++|...... ...
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~ 395 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK-TEA 395 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC-TTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCC-HHH
Confidence 446777778888877766 223333 367778888888774 111111 1345677778888888776553332 234
Q ss_pred CCCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE--EccCC
Q 042636 80 LSSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH--FEAGW 153 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~--~~~~~ 153 (219)
+...+ +|++|++++ .+... +.++..+++|+.|++++|.+...+...+..+++|+.|+++ +...+..+. .....
T Consensus 396 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 396 FKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTCT-TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred hcCCc-cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 44455 788888876 44432 2336677788888888877766656667778888888887 433332221 12345
Q ss_pred CcccceeeecccCCcceEE-EcCCcccccceeeeecCCCCCcchhHHhhhh
Q 042636 154 FPKLQILTLFDFVAVKSVI-IEKGAMPDIRELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 154 ~~~L~~L~l~~~~~~~~~~-~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
+++|+.|++.++. +..+. ...+.+++|+.|+++++.-....|.++..+.
T Consensus 475 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 475 LGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred CCCccEEECCCCc-cCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 6778888887654 33332 2334577788888887754444454554443
No 30
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=121.04 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=65.3
Q ss_pred ccCC-cccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccc
Q 042636 3 KVHR-GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 3 ~lP~-~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
.+|. .++++++|++|++.++ ....+..++++++|++|+++. +....+. ..+.++++|++|++++|.........
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~ 143 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY--NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS 143 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS--SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC--CcCCcCCHhHhCCCccCCEEECCCCCCcccCchh
Confidence 3444 4666666777666655 222233456666666666663 1111222 22455666666666655443221112
Q ss_pred cCCCcccCccEEEecc--cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 79 SLSSPPQYLQRLYLTG--NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~--~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+...+ +|++|++++ .++.+ +..+..+++|+.|++++|.+.......+..+++|++|+++
T Consensus 144 ~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 144 LFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206 (353)
T ss_dssp SCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred hhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence 233333 566666654 13332 2344455555666665555544333344444444444443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=4e-15 Score=127.85 Aligned_cols=87 Identities=13% Similarity=0.179 Sum_probs=61.8
Q ss_pred hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCccc
Q 042636 101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMP 179 (219)
Q Consensus 101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p 179 (219)
.++..+++|+.|++++|.+.+..+..+..+++|+.|+++ +... .+......+++|+.|++.++. +..++...+.++
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~ 324 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD 324 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCcccccCCCCcEEECCCCC-CCccCcccccCC
Confidence 456778889999999998887666788899999999998 4332 244445568889999988754 444433334467
Q ss_pred ccceeeeecCC
Q 042636 180 DIRELGIGPFP 190 (219)
Q Consensus 180 ~L~~L~l~~~~ 190 (219)
+|+.|++.+|.
T Consensus 325 ~L~~L~L~~N~ 335 (597)
T 3oja_B 325 RLENLYLDHNS 335 (597)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 77777777654
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=1.3e-14 Score=110.56 Aligned_cols=187 Identities=17% Similarity=0.114 Sum_probs=131.5
Q ss_pred cccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEe-cCCCccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLM-ASKDEILDL 77 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~-~~~~~~~~~ 77 (219)
+.+|. +. .++++|++.++ ...++. .++++++|++|+++. +.....+. ..+.++++|++|++++ |..... +.
T Consensus 24 ~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~ 98 (239)
T 2xwt_C 24 QRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DP 98 (239)
T ss_dssp SSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CT
T ss_pred cccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CH
Confidence 45777 44 38899998887 444443 588899999999993 22133332 3568899999999998 665443 22
Q ss_pred ccCCCcccCccEEEecc-cCCCCChhhhcCCCcc---EEEEeee-cCCCCCCccccCCCccc-eeeec-cccCCceEEEc
Q 042636 78 QSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVI---RLGLDLS-GLTEDPLRVPHALPNLL-ELRLG-GTYNYKLFHFE 150 (219)
Q Consensus 78 ~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~-~~~~~~~~~~~ 150 (219)
..+...+ +|++|++++ .++.+|. +..+.+|+ .|++++| .+...+...+..+++|+ .|+++ +... .+...
T Consensus 99 ~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~ 174 (239)
T 2xwt_C 99 DALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGY 174 (239)
T ss_dssp TSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTT
T ss_pred HHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHh
Confidence 3444555 999999998 7888886 66777777 9999999 88776666788999999 99997 4332 23322
Q ss_pred cCCCcccceeeecccCCcceEEEc-CCcc-cccceeeeecCCCCCcchhH
Q 042636 151 AGWFPKLQILTLFDFVAVKSVIIE-KGAM-PDIRELGIGPFPLWSMYIFL 198 (219)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~~-~~~~-p~L~~L~l~~~~~l~~~~~~ 198 (219)
....++|+.|++.++..++.++.. .+.+ ++|+.|++.++ .+..+|.+
T Consensus 175 ~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp TTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT
T ss_pred hcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh
Confidence 222368999999976546655432 2456 89999999985 45666653
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.53 E-value=2.3e-15 Score=130.26 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=80.2
Q ss_pred cCCccc--ccccccccccccc--ChHhHHHHhcccccceeeeeeCCC-Chh-HHHHHHhcc------CCCCeEEEEecCC
Q 042636 4 VHRGLG--SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNG-NGK-DVCALIANL------ENLESLTVLMASK 71 (219)
Q Consensus 4 lP~~l~--~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~ 71 (219)
+|++++ ++++|++|++.++ .+.+|..++++++|++|+++. +. ..+ .++..++++ ++|++|++++|..
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC-NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT-CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC-CCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 788877 8888888888776 566777788888888888873 33 344 566666665 7777777777665
Q ss_pred CcccccccCCCcccCccEEEecc-cCC-CCChhhhcCCCccEEEEeeecCCCCCCccccCCCc-cceeeec
Q 042636 72 DEILDLQSLSSPPQYLQRLYLTG-NMK-KLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN-LLELRLG 139 (219)
Q Consensus 72 ~~~~~~~~~~~~~~~L~~L~l~~-~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~ 139 (219)
........+..++ +|++|++++ .++ .+| .+..+++|+.|++++|.+... +..+..+++ |+.|+++
T Consensus 318 ~~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~l-p~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 318 KTFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEI-PANFCGFTEQVENLSFA 385 (636)
T ss_dssp SSCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEEC-CTTSEEECTTCCEEECC
T ss_pred CccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccc-cHhhhhhcccCcEEEcc
Confidence 4221101344444 666666665 454 455 455555555555555555422 223444555 5555554
No 34
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=4.3e-15 Score=115.66 Aligned_cols=189 Identities=15% Similarity=0.053 Sum_probs=129.9
Q ss_pred cccCCcccccccccccccccc-ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++. .++++|++.++ ...+ +..++++++|++|+++. +.........+.++++|++|++++|...... ...
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 95 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGA 95 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTT
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccCccC-hhh
Confidence 45787765 47899999887 3333 34688999999999984 2222222335788999999999998765443 244
Q ss_pred CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeeccccCCceEE-EccCCCc
Q 042636 80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLGGTYNYKLFH-FEAGWFP 155 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~ 155 (219)
+..++ +|++|++++ .+..++. .+..+++|++|++++|.+.... ...+..+++|+.|+++.+.... +. .....++
T Consensus 96 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~ 173 (276)
T 2z62_A 96 FSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLH 173 (276)
T ss_dssp TTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHH
T ss_pred hcCCc-cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhh
Confidence 55566 999999987 6766654 5778999999999999987743 5678899999999998332221 11 1122234
Q ss_pred ccc----eeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhH
Q 042636 156 KLQ----ILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFL 198 (219)
Q Consensus 156 ~L~----~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~ 198 (219)
.|+ .|++.++. +..+.......++|+.|+++++. +..+|.+
T Consensus 174 ~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~ 218 (276)
T 2z62_A 174 QMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ-LKSVPDG 218 (276)
T ss_dssp TCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC-CSCCCTT
T ss_pred hccccceeeecCCCc-ccccCccccCCCcccEEECCCCc-eeecCHh
Confidence 555 67777543 55554433445689999999875 6666553
No 35
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=4.9e-15 Score=116.37 Aligned_cols=185 Identities=17% Similarity=0.050 Sum_probs=136.3
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
++++++++++++.++ ...+|..+ .++++.|+++. +......+..+.++++|++|++++|....... ....+ +
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~-~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLP-V 78 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCT-T
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCC-c
Confidence 677888999988766 45555544 36899999984 32223334567899999999999987655432 24455 9
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
|++|++++ .++.+|..+..+++|+.|++++|++...+...+..+++|+.|+++ +.... ........+++|+.|++.+
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence 99999998 888899888899999999999999998777788999999999998 44432 1111234578999999997
Q ss_pred cCCcceEEEcC-CcccccceeeeecCCCCCcchhHHhhh
Q 042636 165 FVAVKSVIIEK-GAMPDIRELGIGPFPLWSMYIFLTDHI 202 (219)
Q Consensus 165 ~~~~~~~~~~~-~~~p~L~~L~l~~~~~l~~~~~~~~~l 202 (219)
+. ++.++... ..+++|+.|++.++ .+..+|.++...
T Consensus 158 N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~ 194 (290)
T 1p9a_G 158 NN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS 194 (290)
T ss_dssp SC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred Cc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc
Confidence 54 55554332 45799999999986 466777665443
No 36
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=1.5e-15 Score=121.27 Aligned_cols=184 Identities=18% Similarity=0.146 Sum_probs=126.1
Q ss_pred cCCcccccccccccccccc--ChH-hHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecC-CCccccccc
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQ-VLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMAS-KDEILDLQS 79 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~ 79 (219)
.+..+.++++|++|++.++ ... ++..++++++|++|+++. +......+..++++++|++|++++|. .....-...
T Consensus 85 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG-LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT-CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH
T ss_pred cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC-cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH
Confidence 3445677899999999887 444 777889999999999983 44555777888999999999999873 332111122
Q ss_pred CCCcccCccEEEecc--cCCC--CChhhhcCC-CccEEEEeeec--CCCCC-CccccCCCccceeeecccc-CCceEEEc
Q 042636 80 LSSPPQYLQRLYLTG--NMKK--LPDWIFKLK-NVIRLGLDLSG--LTEDP-LRVPHALPNLLELRLGGTY-NYKLFHFE 150 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~--~~~~--l~~~~~~l~-~L~~L~l~~~~--~~~~~-~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 150 (219)
+...+ +|++|++++ .++. ++..+..++ +|++|++++|. +.... ...+..+++|+.|+++.+. ..+.....
T Consensus 164 ~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 164 LSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 33344 899999986 3443 456677888 99999999884 44221 2345678999999998333 22212223
Q ss_pred cCCCcccceeeecccCCcceEEE-cCCcccccceeeeecC
Q 042636 151 AGWFPKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPF 189 (219)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~ 189 (219)
...+++|+.|++.++.......+ ..+.+|+|+.|++.+|
T Consensus 243 l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 44678999999988753322111 2345899999999988
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.52 E-value=8.5e-15 Score=121.72 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=88.9
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++. .++++|++.++ ....+..++++++|++|+++. +.........+.++++|++|++++|...... ...
T Consensus 67 ~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~ 142 (452)
T 3zyi_A 67 SEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGA 142 (452)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTT
T ss_pred CccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCCCcCCccC-hhh
Confidence 46777665 58899999887 344456789999999999994 2222223356788999999999998765432 234
Q ss_pred CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec
Q 042636 80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+...+ +|++|++++ .++.+|. .+..+++|+.|++++|. +...+...+..+++|+.|+++
T Consensus 143 ~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 143 FEYLS-KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp SSSCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred hcccC-CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence 55566 999999997 6666553 45566677777776532 322233345556666666655
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.7e-15 Score=122.05 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=127.1
Q ss_pred CcccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
++.+|.++. .+|++|++.++ ...++. .++++++|++|+++. +......+..+.++++|++|++++|......+ .
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-S 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-H
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCEEECCCCcCCcCCH-h
Confidence 356787765 48999999887 334443 688999999999984 22222223457889999999999987654322 2
Q ss_pred cCCCcccCccEEEecc-cCCCCCh--hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeeccccCCceEEEccCCC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF 154 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 154 (219)
.+...+ +|++|++++ .++.+|. .+..+++|++|++++|. +...+...+..+++|+.|+++.+............+
T Consensus 119 ~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 244555 999999998 7778776 67889999999999984 555555678889999999998332222112234557
Q ss_pred cccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 155 PKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
++|++|++.++. ++.++.. .+.+++|+.|++.++.
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 788888888654 3332211 1236788888888764
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.52 E-value=2.2e-14 Score=119.03 Aligned_cols=135 Identities=18% Similarity=0.107 Sum_probs=96.0
Q ss_pred CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
++|+.|++++|......+ ..+...+ +|++|++++ .++.+ |.++..+++|+.|++++|.+...+...++.+++|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLK-SVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECT-TTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccch-hhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 356666666655443322 3344555 999999988 67664 5678889999999999999987666788999999999
Q ss_pred eeccccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCCCCCcch
Q 042636 137 RLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
+++.+............+++|++|++.++. +..++.. .+.+++|+.|++.+++-....|
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 998333222122334568999999999754 5554432 2568999999999987544444
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=4.5e-15 Score=127.42 Aligned_cols=99 Identities=12% Similarity=-0.005 Sum_probs=44.6
Q ss_pred hhhhcCCCccEEEEeeecCCCC-CCccccCCCccceeeeccccCCceEEEccCCCcccceeeecccCCcceE-EEcCCcc
Q 042636 101 DWIFKLKNVIRLGLDLSGLTED-PLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSV-IIEKGAM 178 (219)
Q Consensus 101 ~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~ 178 (219)
..+..+++|+.|++++|.+.+. ....++.+++|+.|+++.+............+++|+.|++.++. +..+ +...+.+
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 520 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCEEGGGTTTC
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc-CCCcCHHHccCC
Confidence 3344444555555544444331 22334455555555554221111111112345566666666543 3322 2223445
Q ss_pred cccceeeeecCCCCCcchhHHhh
Q 042636 179 PDIRELGIGPFPLWSMYIFLTDH 201 (219)
Q Consensus 179 p~L~~L~l~~~~~l~~~~~~~~~ 201 (219)
++|+.|++++|. +..+|.++..
T Consensus 521 ~~L~~L~l~~N~-l~~~p~~~~~ 542 (606)
T 3vq2_A 521 YSLSTLDCSFNR-IETSKGILQH 542 (606)
T ss_dssp TTCCEEECTTSC-CCCEESCGGG
T ss_pred CcCCEEECCCCc-CcccCHhHhh
Confidence 666666666653 4555555443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=2e-15 Score=129.61 Aligned_cols=134 Identities=16% Similarity=0.079 Sum_probs=73.9
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCC
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALP 131 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 131 (219)
+.++++|++|++++|......+ ..+...+ +|++|++++ .+.. +|.++..+++|+.|++++|.+...+...+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFD-GIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCT-TTTTTCT-TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhccccCCEEECcCCCCCccch-hhhcCCC-CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 3444555555555544322211 2233334 666666665 4433 455566677777777777776665555666777
Q ss_pred ccceeeeccccCCceEEEccCCCcccceeeecccCCcceEEEcCCccc-ccceeeeecCCC
Q 042636 132 NLLELRLGGTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMP-DIRELGIGPFPL 191 (219)
Q Consensus 132 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p-~L~~L~l~~~~~ 191 (219)
+|+.|+++.+......+.....+++|+.|++.++. +..++.....+| +|+.|++.+++-
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 77777776322222222334456677777777544 555554444555 477777776553
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=5.6e-15 Score=117.09 Aligned_cols=173 Identities=19% Similarity=0.138 Sum_probs=78.2
Q ss_pred ccccccccccccc--ChHhHHHH--hcccccceeeeeeCCCChhHHHHHHhcc-----CCCCeEEEEecCCCcccccccC
Q 042636 10 SLMDLQKLSIIEA--DSQVLKEL--MKLRQLRKLGIRPKNGNGKDVCALIANL-----ENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 10 ~l~~L~~L~~~~~--~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
++++|++|++.++ .+..|..+ +.+++|++|+++. +.....+..++++ ++|++|++++|...... ...+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN--VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES--CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC--CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHh
Confidence 4566666666655 23344443 5566666666663 1111112222332 56666666665543322 1233
Q ss_pred CCcccCccEEEecc-cCCC---CChhh--hcCCCccEEEEeeecCCCCC---CccccCCCccceeeec-cccCCceEEEc
Q 042636 81 SSPPQYLQRLYLTG-NMKK---LPDWI--FKLKNVIRLGLDLSGLTEDP---LRVPHALPNLLELRLG-GTYNYKLFHFE 150 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~---l~~~~--~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~-~~~~~~~~~~~ 150 (219)
..++ +|++|++++ .+.. ++..+ ..+++|++|++++|.+...+ ...+..+++|+.|+++ +...+......
T Consensus 170 ~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 170 RVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred ccCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 3444 666666655 2221 12222 45556666666666554311 1222345566666665 33322110011
Q ss_pred cCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636 151 AGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 151 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 189 (219)
...+++|+.|++.++. ++.++.. ..++|+.|+++++
T Consensus 249 ~~~l~~L~~L~Ls~N~-l~~ip~~--~~~~L~~L~Ls~N 284 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTG-LKQVPKG--LPAKLSVLDLSYN 284 (312)
T ss_dssp CCCCTTCCEEECTTSC-CSSCCSS--CCSEEEEEECCSS
T ss_pred hhhcCCCCEEECCCCc-cChhhhh--ccCCceEEECCCC
Confidence 1224556666665433 3332211 1245566666554
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.51 E-value=6.6e-15 Score=117.45 Aligned_cols=190 Identities=18% Similarity=0.109 Sum_probs=115.2
Q ss_pred cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|..+. .++++|++.++ ...++ ..++++++|++|+++. +......+..++++++|++|++++|....... .
T Consensus 44 ~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~ 118 (330)
T 1xku_A 44 EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLKELPE--K 118 (330)
T ss_dssp CSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--S
T ss_pred cccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--h
Confidence 45777664 57889998887 33333 4688999999999994 22222235567889999999999987653311 1
Q ss_pred CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCC--CCCccccCCCccceeeec-cccCC----------
Q 042636 80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTE--DPLRVPHALPNLLELRLG-GTYNY---------- 144 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~-~~~~~---------- 144 (219)
+. + +|++|++++ .++.++. .+..+++|+.|++++|.+.. .....+..+++|+.|+++ +....
T Consensus 119 ~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~ 195 (330)
T 1xku_A 119 MP--K-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195 (330)
T ss_dssp CC--T-TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCS
T ss_pred hc--c-cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCC
Confidence 11 3 788888877 6666543 35677778888887777653 223455666777766665 22211
Q ss_pred ---------ceE-EEccCCCcccceeeecccCCcceEEE-cCCcccccceeeeecCCCCCcchhHHhh
Q 042636 145 ---------KLF-HFEAGWFPKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPFPLWSMYIFLTDH 201 (219)
Q Consensus 145 ---------~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 201 (219)
..+ ......+++|+.|++.++. +..+.. ..+.+++|+.|++.++ .+..+|.++..
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~ 261 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD 261 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhcc
Confidence 000 1112345566666666543 333321 1234677777777776 34556655443
No 44
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.50 E-value=1.8e-14 Score=110.72 Aligned_cols=83 Identities=24% Similarity=0.216 Sum_probs=36.8
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN 132 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (219)
+.++++|++|++++|......+ ..+..++ +|++|++++ .++.+| ..+..+++|++|++++|.+...+...+..+++
T Consensus 55 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 55 FRGLTKLTWLNLDYNQLQTLSA-GVFDDLT-ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCT-TTTTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hcCcccCCEEECCCCcCCccCH-hHhccCC-cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 3444555555555443332211 1222333 555555544 444433 22344455555555555554443334444555
Q ss_pred cceeeec
Q 042636 133 LLELRLG 139 (219)
Q Consensus 133 L~~L~l~ 139 (219)
|+.|+++
T Consensus 133 L~~L~Ls 139 (251)
T 3m19_A 133 LKELRLN 139 (251)
T ss_dssp CCEEECC
T ss_pred ccEEECc
Confidence 5555554
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=119.72 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=109.7
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
+..+|.++. .+++.|++.++ ....+..++++++|++|+++. +....-....+.++++|++|++++|...... ..
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 130 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NG 130 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCCCcCCeeC-Hh
Confidence 356788775 57888988877 333346688999999999994 2222222356788999999999998765432 23
Q ss_pred cCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF 154 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~ 154 (219)
.+...+ +|++|++++ .++.++. .+..+++|+.|++++|. +...+...+..+++|+.|+++ +.... ++ ....+
T Consensus 131 ~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l 206 (440)
T 3zyj_A 131 AFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPL 206 (440)
T ss_dssp TSCSCS-SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTC
T ss_pred Hhhccc-cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCC
Confidence 455556 999999998 7777654 56789999999999854 444445578899999999998 43321 22 13345
Q ss_pred cccceeeeccc
Q 042636 155 PKLQILTLFDF 165 (219)
Q Consensus 155 ~~L~~L~l~~~ 165 (219)
++|+.|++.++
T Consensus 207 ~~L~~L~Ls~N 217 (440)
T 3zyj_A 207 IKLDELDLSGN 217 (440)
T ss_dssp SSCCEEECTTS
T ss_pred cccCEEECCCC
Confidence 56666666654
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=114.75 Aligned_cols=179 Identities=16% Similarity=0.090 Sum_probs=91.0
Q ss_pred cCCcc--cccccccccccccc--ChH---h-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccc
Q 042636 4 VHRGL--GSLMDLQKLSIIEA--DSQ---V-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEIL 75 (219)
Q Consensus 4 lP~~l--~~l~~L~~L~~~~~--~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 75 (219)
.|..+ +++++|++|++.++ ... . ...+..+++|++|+++. +......+..++++++|++|++++|......
T Consensus 107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQ-AHSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEEC-CSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeC-CCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 34444 56666666666655 111 1 12344566666666663 2222222234456666677776666543211
Q ss_pred --c-cccCCCcccCccEEEecc-cCCCCChh----hhcCCCccEEEEeeecCCCCCCccccC---CCccceeeec-cccC
Q 042636 76 --D-LQSLSSPPQYLQRLYLTG-NMKKLPDW----IFKLKNVIRLGLDLSGLTEDPLRVPHA---LPNLLELRLG-GTYN 143 (219)
Q Consensus 76 --~-~~~~~~~~~~L~~L~l~~-~~~~l~~~----~~~l~~L~~L~l~~~~~~~~~~~~l~~---l~~L~~L~l~-~~~~ 143 (219)
. .......+ +|++|++++ .++.++.. +..+++|++|++++|.+....+..+.. +++|++|+++ +...
T Consensus 186 ~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 186 GLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 1 11112333 666666665 45443321 345567777777777666542222333 3577777776 3332
Q ss_pred CceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636 144 YKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
.+ +...+++|+.|++.++. +..++. ...+|+|+.|++.+++
T Consensus 265 --~l--p~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 265 --QV--PKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp --SC--CSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred --ch--hhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 12 12223667777776543 444332 3456777777776654
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.49 E-value=3.1e-15 Score=126.93 Aligned_cols=180 Identities=14% Similarity=0.110 Sum_probs=72.0
Q ss_pred ccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 8 LGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 8 l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
++++++|++|++.++ ....+..++++++|++|+++. +...+..+..++++++|++|++++|..........+...+
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~- 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT- 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-
Confidence 444444444444443 111223344444444444442 1111112222444444555544444332211112222233
Q ss_pred CccEEEecc-c-CCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEEEccCCCcccceeee
Q 042636 86 YLQRLYLTG-N-MKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILTL 162 (219)
Q Consensus 86 ~L~~L~l~~-~-~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 162 (219)
+|++|++++ . ++.+| ..+..+++|++|++++|.+.......+..+++|+.|+++.+..........+.+++|+.|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 444444443 2 23332 23344444555555544444333334444445555544411111100001123566666666
Q ss_pred cccCCcceEEEc----CCcccccceeeeecCC
Q 042636 163 FDFVAVKSVIIE----KGAMPDIRELGIGPFP 190 (219)
Q Consensus 163 ~~~~~~~~~~~~----~~~~p~L~~L~l~~~~ 190 (219)
.++. +....+. ...+++|+.|++.++.
T Consensus 204 ~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 204 RDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp ESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cCCc-cccccccccchhhhhhcccceeccccc
Confidence 6543 2222111 1235667777777653
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.48 E-value=2.9e-14 Score=126.75 Aligned_cols=132 Identities=19% Similarity=0.137 Sum_probs=98.1
Q ss_pred cCCccc--ccccccccccccc--ChHhHHHHhcccccceeeeeeCCC-Chh-HHHHHHhccC-------CCCeEEEEecC
Q 042636 4 VHRGLG--SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNG-NGK-DVCALIANLE-------NLESLTVLMAS 70 (219)
Q Consensus 4 lP~~l~--~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~ 70 (219)
+|++++ ++++|++|++.++ ...+|..++++++|+.|+++. +. ..+ .++..+++++ +|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~-N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC-NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT-CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC-CCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 888888 9999999999887 677788889999999999983 33 444 6777777665 89999998887
Q ss_pred CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCc-cceeeec
Q 042636 71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN-LLELRLG 139 (219)
Q Consensus 71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~ 139 (219)
.........+..++ +|+.|++++ .++.+| .+..+++|+.|++++|.+... +..+..+++ |+.|+++
T Consensus 560 L~~ip~~~~l~~L~-~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~l-p~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 560 LEEFPASASLQKMV-KLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp CCBCCCHHHHTTCT-TCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCC-CTTSCEECTTCCEEECC
T ss_pred CCccCChhhhhcCC-CCCEEECCCCCcccch-hhcCCCcceEEECcCCccccc-hHHHhhccccCCEEECc
Confidence 66221111355565 888888887 666777 677788888888888877733 345667777 8888887
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.1e-14 Score=109.86 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=118.1
Q ss_pred cccCC-cccccccccccccccc-ChHhHHH-HhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccccc
Q 042636 2 AKVHR-GLGSLMDLQKLSIIEA-DSQVLKE-LMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDL 77 (219)
Q Consensus 2 ~~lP~-~l~~l~~L~~L~~~~~-~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 77 (219)
..+|. .++++++|++|++.++ ...++.. ++++++|++|+++. +....+ ...+.++++|++|++++|......+
T Consensus 50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 126 (270)
T 2o6q_A 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD--NKLQALPIGVFDQLVNLAELRLDRNQLKSLPP- 126 (270)
T ss_dssp SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS--SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-
T ss_pred CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC--CcCCcCCHhHcccccCCCEEECCCCccCeeCH-
Confidence 45554 6899999999999887 4445444 57899999999984 222222 2345788999999999987654432
Q ss_pred ccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCC
Q 042636 78 QSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWF 154 (219)
Q Consensus 78 ~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~ 154 (219)
..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +.... ........+
T Consensus 127 ~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 204 (270)
T 2o6q_A 127 RVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSL 204 (270)
T ss_dssp TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTC
T ss_pred HHhCcCc-CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccc
Confidence 3345555 999999998 78777754 6789999999999999988777778899999999998 43322 111123457
Q ss_pred cccceeeecccC
Q 042636 155 PKLQILTLFDFV 166 (219)
Q Consensus 155 ~~L~~L~l~~~~ 166 (219)
++|+.|++.+++
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 899999998765
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=1.6e-13 Score=110.02 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=37.9
Q ss_pred hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCccccc
Q 042636 103 IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDI 181 (219)
Q Consensus 103 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L 181 (219)
+..+++|+.|++++|.+...+. +..+++|+.|+++ +.... + .....+++|+.|++.++. +..+. ....+++|
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L 289 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQL 289 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSC-CCCCG-GGGGCTTC
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCc-cCCCh-hhcCCCCC
Confidence 4445555555555555544322 4555666666655 22211 1 123345556666555432 33221 12334555
Q ss_pred ceeeeecCC
Q 042636 182 RELGIGPFP 190 (219)
Q Consensus 182 ~~L~l~~~~ 190 (219)
+.|++.+|.
T Consensus 290 ~~L~L~~n~ 298 (347)
T 4fmz_A 290 NSLFLNNNQ 298 (347)
T ss_dssp SEEECCSSC
T ss_pred CEEECcCCc
Confidence 555555553
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=6.3e-15 Score=117.70 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=30.4
Q ss_pred cccC-Ccccccccccccccccc--ChHhHHHHhcccccceeeeee
Q 042636 2 AKVH-RGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRP 43 (219)
Q Consensus 2 ~~lP-~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~ 43 (219)
..+| ..++++++|++|++.++ ....+..++++++|++|+++.
T Consensus 67 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 67 SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3443 46888888898888877 333456678888888888874
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.47 E-value=3e-14 Score=113.77 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=76.1
Q ss_pred cccCCcccccccccccccccc-ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS 79 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 79 (219)
..+|.++. .++++|++.++ ...+ +..++++++|++|+++. +......+..++++++|++|++++|....... .
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~ 120 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--N 120 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--S
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCCCcCCccCc--c
Confidence 45676654 57888888877 3333 45688999999999984 22223335567889999999999876653321 1
Q ss_pred CCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCC
Q 042636 80 LSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLT 120 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~ 120 (219)
+. + +|++|++++ .++.+|. .+..+++|+.|++++|.+.
T Consensus 121 ~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 121 LP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred cc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 11 3 888888887 6666654 3667788888888877764
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.47 E-value=3.4e-14 Score=113.89 Aligned_cols=175 Identities=16% Similarity=0.199 Sum_probs=121.5
Q ss_pred Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636 6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP 84 (219)
Q Consensus 6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (219)
..++++++|++|++.++ ....+. ++.+++|++|+++. +....+.. +..+++|+.|+++++....... +...+
T Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~~~ 221 (347)
T 4fmz_A 149 SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNY--NQIEDISP-LASLTSLHYFTAYVNQITDITP---VANMT 221 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG---GGGCT
T ss_pred cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccC--Cccccccc-ccCCCccceeecccCCCCCCch---hhcCC
Confidence 34788899999998887 222222 78899999999984 22222222 6788899999998876654432 44445
Q ss_pred cCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636 85 QYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL 162 (219)
Q Consensus 85 ~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l 162 (219)
+|++|++++ .++.++. +..+++|+.|++++|.+... ..+..+++|+.|+++ +.... + .....+++|+.|++
T Consensus 222 -~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 222 -RLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFL 294 (347)
T ss_dssp -TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEEC
T ss_pred -cCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEEC
Confidence 899999988 6777765 77888999999999888764 467788999999998 33322 2 12346788999999
Q ss_pred cccCCcceEEEcCCcccccceeeeecCCCCCcc
Q 042636 163 FDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMY 195 (219)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~ 195 (219)
.++...+......+.+|+|+.|++.+|+ +..+
T Consensus 295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred cCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 8765322222223457889999999886 4443
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=4.8e-14 Score=111.60 Aligned_cols=172 Identities=19% Similarity=0.212 Sum_probs=127.1
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
..++.+|++|++.++ ...++ .+..+++|++|+++. +....+.. +.++++|++|++++|..... +.+..++ +
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~~---~~~~~l~-~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKNV---SAIAGLQ-S 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSCC---GGGTTCT-T
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCCc---hhhcCCC-C
Confidence 345788999998877 33333 688899999999995 22222222 78999999999999876543 3455566 9
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
|++|++++ .++.++. +..+++|+.|++++|.+...+ .+..+++|+.|+++ +.... +. ....+++|+.|++.+
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCC--Ch-hhcCCCCCCEEECCC
Confidence 99999998 7777764 788999999999999987753 37889999999998 43332 21 156789999999987
Q ss_pred cCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636 165 FVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
+. +..+.. ...+++|+.|++++|. +..++
T Consensus 183 n~-l~~~~~-l~~l~~L~~L~L~~N~-l~~~~ 211 (308)
T 1h6u_A 183 NK-ISDISP-LASLPNLIEVHLKNNQ-ISDVS 211 (308)
T ss_dssp SC-CCCCGG-GGGCTTCCEEECTTSC-CCBCG
T ss_pred Cc-cCcChh-hcCCCCCCEEEccCCc-cCccc
Confidence 54 444332 4568999999999975 44444
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=3.2e-14 Score=108.41 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=127.5
Q ss_pred CcccCC-cccccccccccccccc--ChHhHH-HHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCccc
Q 042636 1 VAKVHR-GLGSLMDLQKLSIIEA--DSQVLK-ELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEIL 75 (219)
Q Consensus 1 i~~lP~-~l~~l~~L~~L~~~~~--~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~ 75 (219)
|..+|. .++++++|++|++.++ ...++. .++++++|++|+++. ++....+ ...+.++++|++|++++|......
T Consensus 43 l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~-~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp 121 (239)
T 2xwt_C 43 LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN-TRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121 (239)
T ss_dssp CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE-ETTCCEECTTSEECCTTCCEEEEEEECCCSCC
T ss_pred ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC-CCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc
Confidence 345666 5889999999999887 344444 578999999999983 1222222 234678999999999998765532
Q ss_pred ccccCCCcccCcc---EEEecc--cCCCCCh-hhhcCCCcc-EEEEeeecCCCCCCccccCCCccceeeeccccCCceEE
Q 042636 76 DLQSLSSPPQYLQ---RLYLTG--NMKKLPD-WIFKLKNVI-RLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH 148 (219)
Q Consensus 76 ~~~~~~~~~~~L~---~L~l~~--~~~~l~~-~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 148 (219)
.+...+ +|+ +|++++ .++.+|. .+..+++|+ .|++++|.+...+...+.. ++|+.|+++++..-..+.
T Consensus 122 ---~~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 122 ---DLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp ---CCTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEEC
T ss_pred ---cccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCC
Confidence 244444 666 999987 4666654 477899999 9999999988655555555 899999998441112232
Q ss_pred -EccCCC-cccceeeecccCCcceEEEcCCcccccceeeeecCCC
Q 042636 149 -FEAGWF-PKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPL 191 (219)
Q Consensus 149 -~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 191 (219)
.....+ ++|+.|++.++. +..++ ...+++|+.|.+.++..
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~-l~~l~--~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTS-VTALP--SKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCC-CCCCC--CTTCTTCSEEECTTC--
T ss_pred HHHhhccccCCcEEECCCCc-cccCC--hhHhccCceeeccCccC
Confidence 223456 899999999744 55443 34789999999988754
No 56
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.45 E-value=5.7e-14 Score=110.32 Aligned_cols=167 Identities=19% Similarity=0.152 Sum_probs=113.8
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
..++.+|++|++.++ ...+ +.++.+++|++|+++. +....+.. +.++++|++|++++|..... +.+..++ +
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~-~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKDL---SSLKDLK-K 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCG---GGGTTCT-T
T ss_pred hhhcCcccEEEccCCCcccC-hhHhcCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCCC---hhhccCC-C
Confidence 345677888887776 2223 3477888888888884 22222222 77888888888888765443 3355555 8
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
|++|++++ .++.++ .+..+++|+.|++++|.+... ..+..+++|+.|+++ +...+. . ....+++|+.|++.+
T Consensus 114 L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--V-PLAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G-GGTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc--h-hhcCCCccCEEECCC
Confidence 88888887 666663 567788888888888887764 567788888888887 433321 1 255678888888886
Q ss_pred cCCcceEEEcCCcccccceeeeecCC
Q 042636 165 FVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+. ++.+. ....+++|+.|++.+++
T Consensus 188 N~-i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 188 NH-ISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SC-CCBCG-GGTTCTTCSEEEEEEEE
T ss_pred Cc-CCCCh-hhccCCCCCEEECcCCc
Confidence 53 44443 24567888888888764
No 57
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=6e-14 Score=103.90 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=104.1
Q ss_pred hcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCC
Q 042636 31 MKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKN 108 (219)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~ 108 (219)
+.+++|+.|++++ .....++ .+..+++|++|++++|.... ++.+..++ +|++|++++ .++. .+..+..+++
T Consensus 41 ~~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~~~---~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHATN---YNPISGLS-NLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCCSC---CGGGTTCT-TCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCCCc---chhhhcCC-CCCEEEeECCccCcccChhhcCCCC
Confidence 4577888888884 2222333 47888899999998874432 33455555 899999987 5654 4667778889
Q ss_pred ccEEEEeeecCCCCCCccccCCCccceeeecccc-CCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeee
Q 042636 109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTY-NYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIG 187 (219)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~ 187 (219)
|++|++++|.+....+..+..+++|+.|+++.+. ... +. ....+++|+.|++.++. +..+. ....+|+|+.|++.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEEC
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEee
Confidence 9999999888876556677888999999998332 222 22 34567889999988754 44443 34568889999988
Q ss_pred cCC
Q 042636 188 PFP 190 (219)
Q Consensus 188 ~~~ 190 (219)
+++
T Consensus 190 ~N~ 192 (197)
T 4ezg_A 190 SQT 192 (197)
T ss_dssp BC-
T ss_pred Ccc
Confidence 764
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.44 E-value=3.6e-14 Score=120.38 Aligned_cols=184 Identities=15% Similarity=0.071 Sum_probs=122.2
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
++.+|.++. .+|++|++.++ ....+..++++++|++|+++. +......+..++++++|++|++++|......+ .
T Consensus 17 l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 92 (549)
T 2z81_A 17 FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-S 92 (549)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-H
T ss_pred cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCH-H
Confidence 356787765 68888988877 333456688899999999884 22222233557888899999998887654432 2
Q ss_pred cCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeeccccCCceEEEccCCC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTYNYKLFHFEAGWF 154 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 154 (219)
.+..++ +|++|++++ .++. .|..+..+++|++|++++|. +...+...+..+++|++|+++.+............+
T Consensus 93 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 93 WFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171 (549)
T ss_dssp HHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcc
Confidence 244555 899999987 6664 45677888899999999887 333444567888999999997332222122234456
Q ss_pred cccceeeecccCCcceEEE-cCCcccccceeeeecCC
Q 042636 155 PKLQILTLFDFVAVKSVII-EKGAMPDIRELGIGPFP 190 (219)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~-~~~~~p~L~~L~l~~~~ 190 (219)
++|++|++..+.. ..++. ..+.+++|+.|++.++.
T Consensus 172 ~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 172 RDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp SEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCB
T ss_pred ccCceEecccCcc-cccchhhHhhcccccEEEccCCc
Confidence 7888888875432 22111 11247889999988864
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=116.19 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=98.0
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
+..+|.++. ++|++|++.++ ....+..++++++|++|+++. +...+..+..++++++|++|++++|..... +
T Consensus 12 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p-- 85 (520)
T 2z7x_B 12 LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLVKI-S-- 85 (520)
T ss_dssp CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCCEE-E--
T ss_pred ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCceeec-C--
Confidence 457888776 89999999988 444557899999999999994 333333356789999999999999877543 2
Q ss_pred cCCCcccCccEEEecc-cCCC--CChhhhcCCCccEEEEeeecCCCCCCccccCCCcc--ceeeec
Q 042636 79 SLSSPPQYLQRLYLTG-NMKK--LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNL--LELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~ 139 (219)
.. ..+ +|++|++++ .++. +|..+..+++|++|++++|.+... .+..+++| +.|+++
T Consensus 86 ~~-~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 86 CH-PTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLV 146 (520)
T ss_dssp CC-CCC-CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEE
T ss_pred cc-ccC-CccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEee
Confidence 22 455 999999998 6665 578899999999999999988763 34555666 888876
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.44 E-value=7.5e-15 Score=116.36 Aligned_cols=180 Identities=18% Similarity=0.119 Sum_probs=104.1
Q ss_pred ccCCcc--cccccccccccccc-ChHhHHHHhcc-----cccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcc
Q 042636 3 KVHRGL--GSLMDLQKLSIIEA-DSQVLKELMKL-----RQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEI 74 (219)
Q Consensus 3 ~lP~~l--~~l~~L~~L~~~~~-~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 74 (219)
.+|..+ +++++|++|++.++ ....|..++.+ ++|++|+++. +...+..+..++++++|++|++++|.....
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence 356655 67777777777776 22224555555 7777777773 222222224566777777777777664332
Q ss_pred cc-cccC--CCcccCccEEEecc-cCCCCC---hh-hhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec-cccCC
Q 042636 75 LD-LQSL--SSPPQYLQRLYLTG-NMKKLP---DW-IFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNY 144 (219)
Q Consensus 75 ~~-~~~~--~~~~~~L~~L~l~~-~~~~l~---~~-~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~ 144 (219)
.. ...+ ...+ +|++|++++ .++.++ .. +..+++|+.|++++|.+.+.. ...+..+++|+.|+++ +...
T Consensus 189 ~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~- 266 (312)
T 1wwl_A 189 RGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK- 266 (312)
T ss_dssp HHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-
T ss_pred hHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-
Confidence 11 1111 3344 777777776 555332 22 245677777777777776643 2445556777777777 3332
Q ss_pred ceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636 145 KLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 145 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
.++ ...+++|+.|++.++. ++.++. .+.+++|+.|++.+++
T Consensus 267 -~ip--~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 -QVP--KGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SCC--SSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred -hhh--hhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 122 1222677777777543 444432 4557777777777654
No 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=1.1e-13 Score=118.84 Aligned_cols=167 Identities=19% Similarity=0.151 Sum_probs=119.6
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
+..+.+|++|++..+ ...+ +.++.+++|+.|+++. +....+.. +.++++|+.|++++|..... +.+..++ +
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~-~ 110 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKDL---SSLKDLK-K 110 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCC---TTSTTCT-T
T ss_pred hhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCCC---hhhccCC-C
Confidence 456778888888777 3333 3588899999999984 22222222 78889999999998766443 3555566 8
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecc
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFD 164 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~ 164 (219)
|+.|++++ .+..++ .+..+++|+.|++++|.+... ..+..+++|+.|+++ +...+. .. ...+++|+.|++.+
T Consensus 111 L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 111 LKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP--LAGLTKLQNLYLSK 184 (605)
T ss_dssp CCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC-GG--GTTCTTCCEEECCS
T ss_pred CCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc-hh--hccCCCCCEEECcC
Confidence 99999987 676664 577889999999999988764 567889999999998 444322 12 56688999999987
Q ss_pred cCCcceEEEcCCcccccceeeeecCC
Q 042636 165 FVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 165 ~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+. +..++ ....+++|+.|++.+|+
T Consensus 185 N~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 185 NH-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred CC-CCCCh-HHccCCCCCEEEccCCc
Confidence 54 45442 34568889999888764
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=4.3e-14 Score=112.27 Aligned_cols=183 Identities=16% Similarity=0.082 Sum_probs=104.0
Q ss_pred ccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCccccccc--------
Q 042636 10 SLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQS-------- 79 (219)
Q Consensus 10 ~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-------- 79 (219)
.+++|++|++.++ ....+..++++++|++|+++. +...+ ... +.++++|++|++++|..........
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~-~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~ 108 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYE-TLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN 108 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEE-EEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCc-chh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence 4557888888777 344456788888888888874 22111 111 6777788888887765432211000
Q ss_pred -------CCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccc-cCCCccceeeeccccCCceEEE
Q 042636 80 -------LSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVP-HALPNLLELRLGGTYNYKLFHF 149 (219)
Q Consensus 80 -------~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~ 149 (219)
....+ +|++|++++ .++.++ ..+..+++|+.|++++|.+...+...+ ..+++|+.|+++.+.... +.
T Consensus 109 n~l~~~~~~~~~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~- 185 (317)
T 3o53_A 109 NNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK- 185 (317)
T ss_dssp SCCSEEEECCCS-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE-
T ss_pred CccCCcCccccC-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc-
Confidence 00122 566666655 444443 245556777777777776665443333 356777777776222111 21
Q ss_pred ccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHh
Q 042636 150 EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTD 200 (219)
Q Consensus 150 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 200 (219)
....+++|+.|++.++. +..++.....+++|+.|+++++ .+..+|..+.
T Consensus 186 ~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 234 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALR 234 (317)
T ss_dssp CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCC
T ss_pred cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhh
Confidence 22236777777777543 4555444455677888888776 4555655443
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=7.9e-14 Score=107.10 Aligned_cols=160 Identities=24% Similarity=0.263 Sum_probs=117.4
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
+..+|.++. .++++|++.++ ....+..++++++|++|+++. +.........+.++++|++|++++|...... ..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 101 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLANNQLASLP-LG 101 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEECCCCcccccC-hh
Confidence 356787765 58899998887 333445688999999999994 2222222344688999999999998765443 23
Q ss_pred cCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCc
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFP 155 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~ 155 (219)
.+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|+++ +....- .......++
T Consensus 102 ~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~ 179 (251)
T 3m19_A 102 VFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLG 179 (251)
T ss_dssp TTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCT
T ss_pred HhcccC-CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCC
Confidence 445555 999999998 78877654 5789999999999999988776678899999999998 444321 112234578
Q ss_pred ccceeeecccC
Q 042636 156 KLQILTLFDFV 166 (219)
Q Consensus 156 ~L~~L~l~~~~ 166 (219)
+|+.|++.+++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 88888888654
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.42 E-value=1.6e-14 Score=121.31 Aligned_cols=180 Identities=16% Similarity=0.061 Sum_probs=103.4
Q ss_pred cccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc------------
Q 042636 13 DLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ------------ 78 (219)
Q Consensus 13 ~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~------------ 78 (219)
+|++|++.++ ....+..++++++|++|+++. +...+..+ +.++++|++|++++|.........
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 6777777766 333345567777777777763 21111111 566667777776665432211100
Q ss_pred ---cCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCcccc-CCCccceeeec-cccCCceEEEcc
Q 042636 79 ---SLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPH-ALPNLLELRLG-GTYNYKLFHFEA 151 (219)
Q Consensus 79 ---~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~-~~~~~~~~~~~~ 151 (219)
.....+ +|+.|++++ .++.+ |..+..+++|+.|++++|.+.+.++..+. .+++|+.|+++ +... . + ...
T Consensus 112 ~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~-~-~~~ 187 (487)
T 3oja_A 112 SRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D-V-KGQ 187 (487)
T ss_dssp CCEEECCCS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-E-E-ECC
T ss_pred CCCCccccC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-c-c-ccc
Confidence 001122 667777766 55543 34556677788888877777664444443 67788888887 3332 1 2 222
Q ss_pred CCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhh
Q 042636 152 GWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDH 201 (219)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~ 201 (219)
..+++|+.|++.++. +..++...+.+++|+.|+++++. +..+|.++..
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~ 235 (487)
T 3oja_A 188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF 235 (487)
T ss_dssp CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCCC
T ss_pred ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhhcc
Confidence 346788888887644 55554445567888888888753 5556655433
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=1.1e-13 Score=120.30 Aligned_cols=161 Identities=21% Similarity=0.188 Sum_probs=116.6
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
+..+|..+. +++++|++.++ ....+..++++++|++|+++. +...+..+..++++++|++|++++|...... ..
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~ 91 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLS-DK 91 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCS-SCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TT
T ss_pred ccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCC-CccCccCHHHHhcccCcCEEECCCCccCccC-hh
Confidence 356887775 68999999887 333344689999999999984 2222333456788999999999998665432 23
Q ss_pred cCCCcccCccEEEecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceE-EEccCCC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLF-HFEAGWF 154 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~-~~~~~~~ 154 (219)
.+...+ +|++|++++ .++.++ ..+..+++|++|++++|.+...+...+..+++|++|+++ +...+... .+.....
T Consensus 92 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccc
Confidence 455566 999999998 777765 567889999999999999988777778899999999998 43322110 0112235
Q ss_pred cccceeeecccC
Q 042636 155 PKLQILTLFDFV 166 (219)
Q Consensus 155 ~~L~~L~l~~~~ 166 (219)
++|+.|++.++.
T Consensus 171 ~~L~~L~L~~n~ 182 (680)
T 1ziw_A 171 SSLKKLELSSNQ 182 (680)
T ss_dssp CEESEEECTTCC
T ss_pred ccccEEECCCCc
Confidence 789999988653
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=1e-13 Score=102.66 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=111.9
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
.+++.+|++|++.++ ...++ .+..+++|++|+++. + .... +..+.++++|++|++++|...... ...+..++ +
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~-n-~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~-~ 113 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINN-I-HATN-YNPISGLSNLERLRIMGKDVTSDK-IPNLSGLT-S 113 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEES-C-CCSC-CGGGTTCTTCCEEEEECTTCBGGG-SCCCTTCT-T
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccC-C-CCCc-chhhhcCCCCCEEEeECCccCccc-ChhhcCCC-C
Confidence 467889999999887 44445 688999999999994 2 2222 236788999999999998765422 34566666 9
Q ss_pred ccEEEecc-cCCC-CChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636 87 LQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL 162 (219)
Q Consensus 87 L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l 162 (219)
|++|++++ .++. .|..+..+++|+.|++++|. +... ..+..+++|+.|+++ +.... +. ....+++|+.|++
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEE
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEe
Confidence 99999998 6664 56778899999999999998 6554 368899999999998 44432 22 4456899999999
Q ss_pred cccC
Q 042636 163 FDFV 166 (219)
Q Consensus 163 ~~~~ 166 (219)
.++.
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 8754
No 67
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.42 E-value=5e-14 Score=119.95 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=50.8
Q ss_pred HHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCCccccC
Q 042636 53 ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPLRVPHA 129 (219)
Q Consensus 53 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 129 (219)
..+.++++|++|++++|......+ .+...+ +|++|++++ .+...+ ..+..+++|+.|++++|.+.......+..
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~--~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSS--NFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEE--EEETCT-TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred ccccccCccCEEECCCCccccccc--cccccC-CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 344556666666666554332211 133333 566666554 333322 23445555555555555554443444555
Q ss_pred CCccceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636 130 LPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 130 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (219)
+++|+.|+++ +......++.....+++|+.|++.++
T Consensus 444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 5555555555 22221112222333445555555443
No 68
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=2.5e-14 Score=114.18 Aligned_cols=182 Identities=21% Similarity=0.258 Sum_probs=126.3
Q ss_pred cCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCC-CChh-HHHHHHhccCCCCeEEEEec-CCCcccccc
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKN-GNGK-DVCALIANLENLESLTVLMA-SKDEILDLQ 78 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~-~~~~-~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~ 78 (219)
+|..++++++|++|++.++ ....+..++++++|++|+++. + .... .+...+.++++|++|++++| .........
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~-~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG-CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT-CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC-CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 5556788999999999988 677888999999999999994 3 2333 46677889999999999998 554321111
Q ss_pred cCCCcccCccEEEeccc---C--CCCChhhhcCCCccEEEEeeec-CCCCCCccccCCCccceeeecccc-CCceEEEcc
Q 042636 79 SLSSPPQYLQRLYLTGN---M--KKLPDWIFKLKNVIRLGLDLSG-LTEDPLRVPHALPNLLELRLGGTY-NYKLFHFEA 151 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~~---~--~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~ 151 (219)
.+...+.+|++|+++++ + ..+|..+..+++|+.|++++|. +.+..+..+..+++|+.|+++.+. .........
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH
Confidence 12222228999999873 3 2356677889999999999998 665556778899999999998432 111111123
Q ss_pred CCCcccceeeecccCCcceEEEcCCcc-cccceeeeecCC
Q 042636 152 GWFPKLQILTLFDFVAVKSVIIEKGAM-PDIRELGIGPFP 190 (219)
Q Consensus 152 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-p~L~~L~l~~~~ 190 (219)
..+++|+.|++.++ +..-.+ ..+ ..++.|++.++.
T Consensus 269 ~~~~~L~~L~l~~~--i~~~~~--~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 269 GEIPTLKTLQVFGI--VPDGTL--QLLKEALPHLQINCSH 304 (336)
T ss_dssp GGCTTCCEEECTTS--SCTTCH--HHHHHHSTTSEESCCC
T ss_pred hcCCCCCEEeccCc--cCHHHH--HHHHhhCcceEEeccc
Confidence 45899999999976 221111 112 346777776543
No 69
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=3.3e-13 Score=102.29 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=90.7
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
..+|.++. ++|++|++.++ ....+..++++++|++|+++. +....+. ..+.++++|++|++++|......+ .
T Consensus 32 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~-~ 106 (229)
T 3e6j_A 32 ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS-A 106 (229)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-T
T ss_pred CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCccCh-h
Confidence 45676654 67888888777 333355677788888888874 2222222 235677888888888876544322 2
Q ss_pred cCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+...+...+..+++|+.|++.
T Consensus 107 ~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 107 VFDRLV-HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TTTTCT-TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred HhCcch-hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 334455 888888887 777788777888888888888888877655667778888888886
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=122.61 Aligned_cols=183 Identities=16% Similarity=0.078 Sum_probs=123.1
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
..+|. ..+++++|+++++ ....+.+++++++|++|+++. +.....+ +..+.++++|++|++++|......+ .
T Consensus 17 ~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-~ 91 (844)
T 3j0a_A 17 TQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-D 91 (844)
T ss_dssp SCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-T
T ss_pred CCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCH-h
Confidence 45776 3468889998887 344456788999999999983 3233333 4567889999999999877654432 4
Q ss_pred cCCCcccCccEEEecc-cCCC-CChh--hhcCCCccEEEEeeecCCCCCC-ccccCCCccceeeec-cccCCceEEEccC
Q 042636 79 SLSSPPQYLQRLYLTG-NMKK-LPDW--IFKLKNVIRLGLDLSGLTEDPL-RVPHALPNLLELRLG-GTYNYKLFHFEAG 152 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~-~~~~~~~~~~~~~ 152 (219)
.+.+.+ +|++|++++ .+.. .|.. +..+++|++|++++|.+..... ..++++++|+.|+++ +...+. ......
T Consensus 92 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-~~~~l~ 169 (844)
T 3j0a_A 92 AFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-CEHELE 169 (844)
T ss_dssp SSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC-CSGGGH
T ss_pred HccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee-CHHHcc
Confidence 555566 999999987 5654 4433 7788999999999998877543 467899999999998 333221 111111
Q ss_pred CC--cccceeeecccCCcceEEEcCCcccc------cceeeeecCCC
Q 042636 153 WF--PKLQILTLFDFVAVKSVIIEKGAMPD------IRELGIGPFPL 191 (219)
Q Consensus 153 ~~--~~L~~L~l~~~~~~~~~~~~~~~~p~------L~~L~l~~~~~ 191 (219)
.+ ++|+.|++.++......+...+.+++ |+.|++.++.-
T Consensus 170 ~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 22 67888888865533333332233333 88888888743
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.40 E-value=5.2e-14 Score=111.76 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=124.6
Q ss_pred Ccccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHH--HH---------------HhccCCCCeEEEE
Q 042636 6 RGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVC--AL---------------IANLENLESLTVL 67 (219)
Q Consensus 6 ~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~---------------l~~l~~L~~L~l~ 67 (219)
..++++++|++|++.++ ....+. ++.+++|++|+++. +....+. .. ...+++|++|+++
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~--n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 128 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS--SEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC--CccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC
Confidence 46888999999998887 222222 78888899888874 1111110 00 1123456666666
Q ss_pred ecCCCcccccccCCCcccCccEEEecc-cCCCC-Chhh-hcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccC
Q 042636 68 MASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWI-FKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYN 143 (219)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~ 143 (219)
+|......+ ..+..++ +|++|++++ .++.+ +..+ ..+++|+.|++++|.+... .....+++|+.|+++ +...
T Consensus 129 ~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 129 NNKITMLRD-LDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp SSCCCSGGG-BCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCC
T ss_pred CCCCCCccc-hhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCC
Confidence 665544322 2344455 999999998 66664 3344 4789999999999998764 333458999999998 4332
Q ss_pred CceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCC-CcchhHHhhhhh
Q 042636 144 YKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLW-SMYIFLTDHILD 204 (219)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~~~~~~~~l~~ 204 (219)
.+......+++|+.|++.++. +..++.....+++|+.|++.+++-. +.++..+..+..
T Consensus 205 --~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~ 263 (317)
T 3o53_A 205 --FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (317)
T ss_dssp --EECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred --cchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence 233334567899999999764 6666555567899999999998755 345555554443
No 72
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=121.78 Aligned_cols=115 Identities=16% Similarity=0.082 Sum_probs=61.0
Q ss_pred CCcccccccccccccccc--ChHh-HHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccc-cccC
Q 042636 5 HRGLGSLMDLQKLSIIEA--DSQV-LKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILD-LQSL 80 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 80 (219)
|..++++++|++|++.++ ...+ +..++++++|++|+++. +......+..++++++|++|++++|....... ...+
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 455666677777766655 2333 44566666677666662 22222224445666666666666655443221 1123
Q ss_pred CCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCC
Q 042636 81 SSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTE 121 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~ 121 (219)
...+ +|++|++++ .+..+ +..+..+++|+.|++++|.+..
T Consensus 120 ~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 120 RNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 3344 666666665 44432 2345566666666666665544
No 73
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=1.6e-13 Score=102.28 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=62.0
Q ss_pred ccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636 12 MDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ 88 (219)
Q Consensus 12 ~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 88 (219)
.++++|++.++ ...++. .++++++|++|+++. +....+. ..+.++++|++|++++|......+ ..+...+ +|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~-~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGG--NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN-GVFDKLT-QLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCT-TCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCC--CccCccChhhcCCCCCcCEEECCCCcCCccCH-hHhcCcc-CCC
Confidence 35666666555 222222 245566666666663 1111111 123555666666666654432211 2223333 666
Q ss_pred EEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 89 RLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 89 ~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|++++ .++.++.. +..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 666655 45554433 3555666666666666555444445556666666665
No 74
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=9.8e-13 Score=109.70 Aligned_cols=97 Identities=22% Similarity=0.193 Sum_probs=45.3
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|++|++++ .++.++. +..+++|+.|++++|.+.+.+ .+..+++|+.|+++ +...+. . ....+++|+.|++.
T Consensus 266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~-~--~~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI-S--PVSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC-G--GGGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCc-h--hhccCccCCEeECC
Confidence 555555554 3444432 444555555555555554422 24455556666555 222211 1 12345555555555
Q ss_pred ccCCcceEEEcCCcccccceeeeecCC
Q 042636 164 DFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
++. +..+ ...+.+++|+.|++.+|.
T Consensus 340 ~n~-l~~~-~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDV-SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCC-GGGTTCTTCCEEECCSSC
T ss_pred CCc-cCCc-hhhccCCCCCEEeCCCCc
Confidence 442 2222 122345556666665554
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.38 E-value=8.3e-14 Score=116.90 Aligned_cols=191 Identities=10% Similarity=0.034 Sum_probs=127.8
Q ss_pred CCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHH-----------------HHhccCCCCeEEE
Q 042636 5 HRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCA-----------------LIANLENLESLTV 66 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----------------~l~~l~~L~~L~l 66 (219)
|..++++++|++|++.++ ....++ ++.+++|++|+++. +....++. ....+++|+.|++
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L 127 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL 127 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCS--SEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecC--CcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence 457899999999999888 222222 88889999998884 11111100 0012456677777
Q ss_pred EecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhh-cCCCccEEEEeeecCCCCCCccccCCCccceeeec-ccc
Q 042636 67 LMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIF-KLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTY 142 (219)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~ 142 (219)
++|......+ ..+..++ +|+.|++++ .++. .|.++. .+++|+.|++++|.+... .....+++|+.|+++ +..
T Consensus 128 ~~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 128 ANNKITMLRD-LDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp CSSCCCSGGG-BCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred CCCCCCCCCc-hhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCC
Confidence 7665544332 2334455 999999998 6665 455554 789999999999998765 334469999999998 444
Q ss_pred CCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCC-CcchhHHhhhhhh
Q 042636 143 NYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLW-SMYIFLTDHILDQ 205 (219)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~~~~~~~~l~~~ 205 (219)
.+ ++.....+++|+.|++.++. +..++...+.+++|+.|++.+++-. ..+|..+..+...
T Consensus 204 ~~--~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 204 AF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CC--CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 32 33334567899999999754 6666555567899999999998754 3445555544433
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.38 E-value=4.4e-13 Score=111.63 Aligned_cols=170 Identities=16% Similarity=0.051 Sum_probs=88.6
Q ss_pred cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
.++++++|++|++.++ ...++ +++.+++|++|+++. +....+ .++++++|++|++++|..... + +...+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~--n~l~~~--~~~~l~~L~~L~Ls~N~l~~~-~---~~~l~- 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTS--NNITTL--DLSQNTNLTYLACDSNKLTNL-D---VTPLT- 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCS--SCCSCC--CCTTCTTCSEEECCSSCCSCC-C---CTTCT-
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccC--CcCCeE--ccccCCCCCEEECcCCCCcee-e---cCCCC-
Confidence 3556677777777666 22233 566777777777764 111111 156666777777776654432 1 33344
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccc-cCCceEE---------------
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGT-YNYKLFH--------------- 148 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~--------------- 148 (219)
+|++|++++ .++.+| +..+++|++|++++|.+.+.+ ++.+++|+.|+++.+ ..+. +.
T Consensus 107 ~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITK-LDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCC-CCCTTCTTCCEEECCSS
T ss_pred cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCcccc-cccccCCcCCEEECCCC
Confidence 666666665 555554 455666666666666655432 344455555555421 1111 10
Q ss_pred ----EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636 149 ----FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 149 ----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
.....+++|+.|++.++. ++.+ +.+.+++|+.|++.++. +..+|
T Consensus 181 ~l~~l~l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~-l~~ip 228 (457)
T 3bz5_A 181 KITELDVSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNK-LTEID 228 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSC-CSCCC
T ss_pred ccceeccccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCc-ccccC
Confidence 113344555555555432 3332 23456777777777653 33343
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=5.1e-13 Score=111.41 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=108.6
Q ss_pred cccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
+.+++|++|++.++ ...+ ..++.+++|++|+++. + ...... .+.++++|+.|++++|......+ +...+ +|
T Consensus 218 ~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~-n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L 289 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLAN-N-QISNLA-PLSGLTKLTELKLGANQISNISP---LAGLT-AL 289 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-S-CCCCCG-GGTTCTTCSEEECCSSCCCCCGG---GTTCT-TC
T ss_pred cccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCC-C-ccccch-hhhcCCCCCEEECCCCccCcccc---ccCCC-cc
Confidence 34444555554444 1111 2345566666666663 1 111111 15667777777777765544322 44455 99
Q ss_pred cEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636 88 QRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 88 ~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (219)
+.|++++ .++.++. +..+++|+.|++++|.+.+... +..+++|+.|+++ +...+ + .....+++|+.|++.++
T Consensus 290 ~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V-SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--c-hhhccCCCCCEEeCCCC
Confidence 9999998 7777664 7789999999999999877533 6789999999998 43332 2 23456899999999976
Q ss_pred CCcceEEEcCCcccccceeeeecCC
Q 042636 166 VAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 166 ~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
. +..+. +.+.+++|+.|++.+|+
T Consensus 364 ~-l~~~~-~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 364 Q-ISDLT-PLANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CCBCG-GGTTCTTCCEEECCCEE
T ss_pred c-cCccc-hhhcCCCCCEEeccCCc
Confidence 5 44333 25678999999998874
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=1.2e-12 Score=108.93 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=57.7
Q ss_pred ccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 8 LGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 8 l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
++++++|++|++.++ ...+ +++++++|++|+++. +...+.+ .+..+++|+.|++++|..... + +...+ +
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~-n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~---l~~l~-~ 192 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHL-NKKITKL--DVTPQTQLTTLDCSFNKITEL-D---VSQNK-L 192 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTT-CSCCCCC--CCTTCTTCCEEECCSSCCCCC-C---CTTCT-T
T ss_pred CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCC-CCccccc--ccccCCcCCEEECCCCcccee-c---cccCC-C
Confidence 667777777777766 2222 256677777776663 2122222 245566666666666544332 1 22223 4
Q ss_pred ccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 87 LQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 87 L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
|+.|++++ .++.++ +..+++|+.|++++|.+.+.+ +..+++|+.|+++
T Consensus 193 L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 193 LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECC
T ss_pred CCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCCCEEEee
Confidence 55555544 333332 334444555555444444421 3344444444444
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=114.10 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=20.1
Q ss_pred cccccccccccccccc--ChHhHHHHhcccccceeeee
Q 042636 7 GLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIR 42 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~ 42 (219)
.++++++|++|++.++ ....+..++++++|++|+++
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred hccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 4556666666666655 22234455556666666655
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=7.7e-14 Score=118.78 Aligned_cols=183 Identities=16% Similarity=0.077 Sum_probs=129.1
Q ss_pred cccccccccccccc-ChH---hHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636 9 GSLMDLQKLSIIEA-DSQ---VLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPP 84 (219)
Q Consensus 9 ~~l~~L~~L~~~~~-~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (219)
..+++|++|++.++ ... .+..+..+++|++|+++. +....++..+.++++|+.|++++|......+...+...+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~--n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS--CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCC--CccccccccccccCCCCEEEccCCccccccchhhhhcCC
Confidence 56778888888776 222 257788899999999983 222223333678999999999987654443333455556
Q ss_pred cCccEEEecc-cCCC-CChhhhcCCCccEEEEeeecCCC-CCCccccCCCccceeeeccccCCceEEEccCCCcccceee
Q 042636 85 QYLQRLYLTG-NMKK-LPDWIFKLKNVIRLGLDLSGLTE-DPLRVPHALPNLLELRLGGTYNYKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 85 ~~L~~L~l~~-~~~~-l~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 161 (219)
+|++|++++ .+.. .|..+..+++|+.|++++|.+.. ..+..+..+++|+.|+++.+......+.....+++|+.|+
T Consensus 422 -~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 422 -NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp -TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred -CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 999999997 5554 56677889999999999998863 3346788999999999984332221122345678999999
Q ss_pred ecccCCcceEEEc-CCcccccceeeeecCCCCCcc
Q 042636 162 LFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMY 195 (219)
Q Consensus 162 l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~ 195 (219)
+.++. +..+... .+.+++|+.|++.+++-....
T Consensus 501 l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 501 MASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCCCc-CCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 99764 5544322 356899999999997644433
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=3.2e-13 Score=115.12 Aligned_cols=130 Identities=20% Similarity=0.147 Sum_probs=87.1
Q ss_pred CcccCCcccccccccccccccc--ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccc
Q 042636 1 VAKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 1 i~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
++.+|.++. +++++|++.++ ....+..++++++|++|+++. +....-.+..+.++++|++|++++|..... +
T Consensus 43 L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p-- 116 (562)
T 3a79_B 43 LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-S-- 116 (562)
T ss_dssp CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCCEE-C--
T ss_pred CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCCcc-C--
Confidence 346777664 68888888877 333345788899999999884 222222345578888899999988776533 2
Q ss_pred cCCCcccCccEEEecc-cCCCC--ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKL--PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.. ..+ +|++|++++ .++.+ |..+..+++|++|++++|.+....+..+..+ +|+.|+++
T Consensus 117 ~~-~l~-~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~ 177 (562)
T 3a79_B 117 CC-PMA-SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLD 177 (562)
T ss_dssp SC-CCT-TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEE
T ss_pred cc-ccc-cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEee
Confidence 22 444 889999987 66664 4678888888888888888765433333333 33666655
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.36 E-value=4.1e-13 Score=103.91 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=89.3
Q ss_pred cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCccc
Q 042636 7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQ 85 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 85 (219)
.+.++++|++|++.++ ...++ .++.+++|++|+++. +....+.. +.++++|++|++++|....... +.. +
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~--N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~---~~~-~- 106 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSH--NQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPS-A- 106 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCS--SCCCCCGG-GTTCSSCCEEECCSSCCSCCTT---CCC-S-
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCC--CccCCChh-hccCCCCCEEECCCCccCCcCc---ccc-C-
Confidence 3566677777777766 33333 567777788777774 22222222 6777778888887776544322 222 3
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|++|++++ .++.++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+++ +...+. .....+++|+.|++.
T Consensus 107 ~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence 777777776 666654 466777788888877777654 356677778888777 333221 233456777777776
Q ss_pred cc
Q 042636 164 DF 165 (219)
Q Consensus 164 ~~ 165 (219)
++
T Consensus 181 ~N 182 (263)
T 1xeu_A 181 GQ 182 (263)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.34 E-value=1.6e-12 Score=102.03 Aligned_cols=149 Identities=22% Similarity=0.306 Sum_probs=113.0
Q ss_pred ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636 3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS 81 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (219)
.+| +++.+++|++|++.++ ...++. ++++++|++|+++. +....+ ..+.++++|++|++++|..... +.+.
T Consensus 60 ~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~--n~l~~~-~~l~~l~~L~~L~L~~n~i~~~---~~l~ 131 (291)
T 1h6t_A 60 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE--NKVKDL-SSLKDLKKLKSLSLEHNGISDI---NGLV 131 (291)
T ss_dssp CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS--SCCCCG-GGGTTCTTCCEEECTTSCCCCC---GGGG
T ss_pred cCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC--CcCCCC-hhhccCCCCCEEECCCCcCCCC---hhhc
Confidence 444 4888999999999888 333333 89999999999995 222222 3478899999999999876553 3455
Q ss_pred CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccce
Q 042636 82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQI 159 (219)
Q Consensus 82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~ 159 (219)
..+ +|+.|++++ .++.+ ..+..+++|+.|++++|.+...+. +..+++|+.|+++ +.... +. ....+++|+.
T Consensus 132 ~l~-~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 132 HLP-QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDV 204 (291)
T ss_dssp GCT-TCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSE
T ss_pred CCC-CCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCE
Confidence 555 999999998 77777 578889999999999999887543 8899999999998 44322 22 3456889999
Q ss_pred eeecccC
Q 042636 160 LTLFDFV 166 (219)
Q Consensus 160 L~l~~~~ 166 (219)
|++.+++
T Consensus 205 L~l~~n~ 211 (291)
T 1h6t_A 205 LELFSQE 211 (291)
T ss_dssp EEEEEEE
T ss_pred EECcCCc
Confidence 9998654
No 84
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.34 E-value=2e-13 Score=118.67 Aligned_cols=39 Identities=13% Similarity=0.105 Sum_probs=27.5
Q ss_pred CCcccccccccccccccc--ChHhH-HHHhcccccceeeeee
Q 042636 5 HRGLGSLMDLQKLSIIEA--DSQVL-KELMKLRQLRKLGIRP 43 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~~~~~-~~l~~l~~L~~L~l~~ 43 (219)
|..++.+++|++|++.++ ...++ ..++.+++|++|+++.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 556788888888888777 22333 4567778888887773
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=3.8e-13 Score=104.12 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=119.7
Q ss_pred ccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCcc
Q 042636 10 SLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQ 88 (219)
Q Consensus 10 ~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 88 (219)
++.++..+++.++ ...++ .+..+++|+.|+++. .....+. .+.++++|+.|++++|......+ +..++ +|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~-~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP---LKDLT-KLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---GTTCS-SCC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh---hccCC-CCC
Confidence 4556666666655 23333 567889999999984 2222232 57889999999999987655433 55566 999
Q ss_pred EEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 89 RLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 89 ~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
.|++++ .++.+|.... ++|+.|++++|.+... ..+..+++|+.|+++ +...+ +. ....+++|+.|++.++.
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCc
Confidence 999998 7777764333 8999999999998774 468899999999998 44432 22 34568899999999764
Q ss_pred CcceEEEcCCcccccceeeeecCC
Q 042636 167 AVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 167 ~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+..+ .....+++|+.|++.+++
T Consensus 162 -i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 162 -ITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp -CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred -Ccch-HHhccCCCCCEEeCCCCc
Confidence 5544 334568999999999864
No 86
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.33 E-value=9.9e-14 Score=118.36 Aligned_cols=179 Identities=16% Similarity=0.097 Sum_probs=111.8
Q ss_pred cccccccccccccc-ChHhHHHHhcccccceeeeeeC------------CCChhHHHHHHhccCCCCeEE-EEecCCCcc
Q 042636 9 GSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPK------------NGNGKDVCALIANLENLESLT-VLMASKDEI 74 (219)
Q Consensus 9 ~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~------------~~~~~~~~~~l~~l~~L~~L~-l~~~~~~~~ 74 (219)
...++|+.|+++++ ...+|++++++++|+.|++... ....+..+..++++++|+.|+ ++.+.....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 55678888888877 6778888888888888886520 012334455566666676666 333211100
Q ss_pred c-------ccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCc
Q 042636 75 L-------DLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYK 145 (219)
Q Consensus 75 ~-------~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~ 145 (219)
. .+..+. . ..|+.|++++ .++.+|. +..+++|+.|++++|.+... +..++.+++|+.|+++ +...+
T Consensus 426 ~~l~l~~n~i~~l~-~-~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKME-Y-ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHH-H-TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccC-c-cCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCC-
Confidence 0 011111 1 1577788877 6777775 77778888888888877744 3467778888888887 44433
Q ss_pred eEEEccCCCcccceeeecccCCcceE--EEcCCcccccceeeeecCCCCCcch
Q 042636 146 LFHFEAGWFPKLQILTLFDFVAVKSV--IIEKGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 146 ~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
++ ..+.+++|+.|++.++. +..+ +...+.+++|+.|++++++ +..+|
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred -Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 33 45567788888887643 4444 3334567888888888764 44443
No 87
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=1.1e-12 Score=98.77 Aligned_cols=132 Identities=17% Similarity=0.153 Sum_probs=64.5
Q ss_pred ccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 3 KVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
.+|..+. .++++|++.++ ...++ ..+..+++|+.|+++. +....-.+..+.++++|++|++++|......+ ..+
T Consensus 25 ~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f 100 (220)
T 2v9t_B 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITELPK-SLF 100 (220)
T ss_dssp SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCCCCT-TTT
T ss_pred cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCccCH-hHc
Confidence 4455443 35555655555 22222 2355556666666652 11111123344555666666666554432211 222
Q ss_pred CCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 81 SSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+++ +|++|++++ .++.+ |..+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus 101 ~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 101 EGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp TTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence 3333 566666655 44443 3344555566666666665555444445555666666554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=1.6e-13 Score=111.65 Aligned_cols=132 Identities=13% Similarity=0.149 Sum_probs=61.5
Q ss_pred cccccccccccccccc-----ChHhHHH-------Hhcccccceeeeee---CCCChhHHHHHHhccCCCCeEEEEecCC
Q 042636 7 GLGSLMDLQKLSIIEA-----DSQVLKE-------LMKLRQLRKLGIRP---KNGNGKDVCALIANLENLESLTVLMASK 71 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~-----~~~~~~~-------l~~l~~L~~L~l~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 71 (219)
.+.++++|++|++.++ ...+|.. +.++++|++|+++. .......++..+.++++|++|++++|..
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3555666666666554 1122322 34566666666663 1111123555566666666666666544
Q ss_pred Ccccc--c-ccCCCc---------ccCccEEEecc-cCC--CCC---hhhhcCCCccEEEEeeecCCCCC----Cc-ccc
Q 042636 72 DEILD--L-QSLSSP---------PQYLQRLYLTG-NMK--KLP---DWIFKLKNVIRLGLDLSGLTEDP----LR-VPH 128 (219)
Q Consensus 72 ~~~~~--~-~~~~~~---------~~~L~~L~l~~-~~~--~l~---~~~~~l~~L~~L~l~~~~~~~~~----~~-~l~ 128 (219)
..... + ..+... + +|++|++++ .++ .++ ..+..+++|++|++++|.+.... .. .+.
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 21110 0 011111 2 566666654 333 122 23344556666666655554210 11 344
Q ss_pred CCCccceeeec
Q 042636 129 ALPNLLELRLG 139 (219)
Q Consensus 129 ~l~~L~~L~l~ 139 (219)
.+++|+.|+++
T Consensus 214 ~~~~L~~L~Ls 224 (386)
T 2ca6_A 214 YCQELKVLDLQ 224 (386)
T ss_dssp GCTTCCEEECC
T ss_pred cCCCccEEECc
Confidence 55556666555
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=2.4e-12 Score=110.61 Aligned_cols=149 Identities=22% Similarity=0.295 Sum_probs=113.4
Q ss_pred ccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636 3 KVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS 81 (219)
Q Consensus 3 ~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (219)
.+| +++.+++|++|++..+ ...++. +.++++|+.|+++. +....+ ..+.++++|+.|++++|..... +.+.
T Consensus 57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~--N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l---~~l~ 128 (605)
T 1m9s_A 57 SVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE--NKIKDL-SSLKDLKKLKSLSLEHNGISDI---NGLV 128 (605)
T ss_dssp CCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS--SCCCCC-TTSTTCTTCCEEECTTSCCCCC---GGGG
T ss_pred CCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC--CCCCCC-hhhccCCCCCEEEecCCCCCCC---cccc
Confidence 444 5889999999999888 333333 88999999999995 222222 2578899999999999876553 3455
Q ss_pred CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccce
Q 042636 82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQI 159 (219)
Q Consensus 82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~ 159 (219)
.++ +|+.|+++. .+..+ ..+..+++|+.|++++|.+...+. +..+++|+.|+++ +...+ + .....+++|+.
T Consensus 129 ~l~-~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~ 201 (605)
T 1m9s_A 129 HLP-QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDV 201 (605)
T ss_dssp GCT-TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSE
T ss_pred CCC-ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCE
Confidence 566 999999998 77777 577889999999999999887543 8899999999998 44322 2 23566889999
Q ss_pred eeecccC
Q 042636 160 LTLFDFV 166 (219)
Q Consensus 160 L~l~~~~ 166 (219)
|++.+++
T Consensus 202 L~L~~N~ 208 (605)
T 1m9s_A 202 LELFSQE 208 (605)
T ss_dssp EECCSEE
T ss_pred EEccCCc
Confidence 9998654
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.29 E-value=1.8e-12 Score=96.62 Aligned_cols=158 Identities=20% Similarity=0.093 Sum_probs=103.9
Q ss_pred ccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCcc
Q 042636 33 LRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVI 110 (219)
Q Consensus 33 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~ 110 (219)
.++|++|+++. +.........+.++++|++|++++|...... ...+..++ +|++|++++ .++.+|.. +..+++|+
T Consensus 27 ~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLT-SLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCC-CcCEEECCCCcCCccCHhHhcCccCCC
Confidence 45788888884 2111111223577888999999887665432 22344455 899999987 67776644 57788999
Q ss_pred EEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636 111 RLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 189 (219)
.|++++|.+...+...+..+++|+.|+++ +.... ........+++|+.|++.+++. .+.+|.|+.|.+..+
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWIN 175 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCB-------CCCTTTTHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCe-------ecCCCCHHHHHHHHH
Confidence 99999888887666667888999999997 43322 1111234577888888886542 234677777777766
Q ss_pred CCCCcchhHHhh
Q 042636 190 PLWSMYIFLTDH 201 (219)
Q Consensus 190 ~~l~~~~~~~~~ 201 (219)
..-+.+|..+..
T Consensus 176 ~~~g~ip~~~~~ 187 (208)
T 2o6s_A 176 KHSGVVRNSAGS 187 (208)
T ss_dssp HCTTTBBCTTSS
T ss_pred hCCceeeccCcc
Confidence 555556654443
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.27 E-value=6.6e-12 Score=107.00 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=42.3
Q ss_pred CccEEEecc-cCCC-CChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636 86 YLQRLYLTG-NMKK-LPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 86 ~L~~L~l~~-~~~~-l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~ 161 (219)
+|++|++++ .++. +|.. +..+++|+.|++++|.+.+..+..+. ++|+.|+++ +... .++.....+++|+.|+
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~ 479 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELN 479 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEE
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEE
Confidence 444444444 3333 3322 23344445555544444332111111 355555554 2221 1222222455566666
Q ss_pred ecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 162 LFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 162 l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
+.++. +..++.. .+.+++|+.|++.+++
T Consensus 480 L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 480 VASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 65432 3333322 2345566666666554
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=4.8e-13 Score=108.91 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=61.3
Q ss_pred cccccccccccccc--Ch----HhHHHHhcccccceeeeeeCCCChh----HHHHHHhcc---------CCCCeEEEEec
Q 042636 9 GSLMDLQKLSIIEA--DS----QVLKELMKLRQLRKLGIRPKNGNGK----DVCALIANL---------ENLESLTVLMA 69 (219)
Q Consensus 9 ~~l~~L~~L~~~~~--~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~l---------~~L~~L~l~~~ 69 (219)
.++++|++|++.++ .. .++..+.++++|++|+++. +.... .+...+..+ ++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHN-NGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcC-CCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 45566666666555 22 3455556666666666652 22221 122223333 56666666665
Q ss_pred CCCcc-cc-c-ccCCCcccCccEEEecc-cCCC------CChhhhcCCCccEEEEeeecCCC----CCCccccCCCccce
Q 042636 70 SKDEI-LD-L-QSLSSPPQYLQRLYLTG-NMKK------LPDWIFKLKNVIRLGLDLSGLTE----DPLRVPHALPNLLE 135 (219)
Q Consensus 70 ~~~~~-~~-~-~~~~~~~~~L~~L~l~~-~~~~------l~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~ 135 (219)
..... .+ + ..+...+ +|++|++++ .++. .|.++..+++|+.|++++|.+.. .....+..+++|+.
T Consensus 170 ~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp CCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 44311 11 0 1222233 566666655 3331 12244555666666666665531 11223455566666
Q ss_pred eeec
Q 042636 136 LRLG 139 (219)
Q Consensus 136 L~l~ 139 (219)
|+++
T Consensus 249 L~L~ 252 (386)
T 2ca6_A 249 LGLN 252 (386)
T ss_dssp EECT
T ss_pred EECC
Confidence 6665
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.26 E-value=1.9e-12 Score=102.35 Aligned_cols=171 Identities=17% Similarity=0.079 Sum_probs=88.7
Q ss_pred cccccccccc--ChHhHHHH--hcccccceeeeeeCCCChhH---H-HHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636 13 DLQKLSIIEA--DSQVLKEL--MKLRQLRKLGIRPKNGNGKD---V-CALIANLENLESLTVLMASKDEILDLQSLSSPP 84 (219)
Q Consensus 13 ~L~~L~~~~~--~~~~~~~l--~~l~~L~~L~l~~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (219)
+|++|++.++ ....+..+ +++++|++|+++. +..... . ...+..+++|++|++++|...... ...+..++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~ 169 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRN-VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFP 169 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES-CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeec-ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh-HHHhccCC
Confidence 4566665555 23333444 5666666666664 111110 1 123445667777777766553332 23344444
Q ss_pred cCccEEEecc-cCCC---C--ChhhhcCCCccEEEEeeecCCCCCCc---cccCCCccceeeec-cccCCceEEEccCC-
Q 042636 85 QYLQRLYLTG-NMKK---L--PDWIFKLKNVIRLGLDLSGLTEDPLR---VPHALPNLLELRLG-GTYNYKLFHFEAGW- 153 (219)
Q Consensus 85 ~~L~~L~l~~-~~~~---l--~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~-~~~~~~~~~~~~~~- 153 (219)
+|++|++++ .+.. + +.+...+++|++|++++|.+...+.. .++.+++|++|+++ +...+. .+.....
T Consensus 170 -~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~ 247 (310)
T 4glp_A 170 -ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRC 247 (310)
T ss_dssp -TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSC
T ss_pred -CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhc
Confidence 677777766 3322 1 12234566777777777766532111 23566777777777 333221 1111122
Q ss_pred --CcccceeeecccCCcceEEEcCCcccccceeeeecCC
Q 042636 154 --FPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 154 --~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 190 (219)
+++|++|++.++. ++.++ ...+++|+.|+++++.
T Consensus 248 ~~~~~L~~L~Ls~N~-l~~lp--~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 248 MWSSALNSLNLSFAG-LEQVP--KGLPAKLRVLDLSSNR 283 (310)
T ss_dssp CCCTTCCCEECCSSC-CCSCC--SCCCSCCSCEECCSCC
T ss_pred cCcCcCCEEECCCCC-CCchh--hhhcCCCCEEECCCCc
Confidence 2677788777543 44432 2334778888887763
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.26 E-value=4.2e-12 Score=108.20 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=110.6
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSL 80 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 80 (219)
..+|.++. ++|++|++.++ ...+| +.+++|++|+++. +....++. +.+ +|++|++++|..... +.
T Consensus 72 ~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~--N~l~~ip~-l~~--~L~~L~Ls~N~l~~l---p~- 137 (571)
T 3cvr_A 72 SSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD--NRLSTLPE-LPA--SLKHLDVDNNQLTML---PE- 137 (571)
T ss_dssp SCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS--SCCSCCCC-CCT--TCCEEECCSSCCSCC---CC-
T ss_pred CccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC--CCCCCcch-hhc--CCCEEECCCCcCCCC---CC-
Confidence 34566553 56777777766 33444 4567788887774 22222222 333 788888887765442 22
Q ss_pred CCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCccc-
Q 042636 81 SSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKL- 157 (219)
Q Consensus 81 ~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L- 157 (219)
.++ +|+.|++++ .++.+|. .+++|+.|++++|.+...+. +. ++|+.|+++ +... .++. .. ++|
T Consensus 138 -~l~-~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~--~lp~-~~--~~L~ 203 (571)
T 3cvr_A 138 -LPA-LLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE--SLPA-VP--VRNH 203 (571)
T ss_dssp -CCT-TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS--SCCC-CC------
T ss_pred -cCc-cccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC--chhh-HH--Hhhh
Confidence 233 888888887 6777775 56788888888888877443 44 888888887 4332 1222 11 256
Q ss_pred ------ceeeecccCCcceEEEcCCcccccceeeeecCCCCCcchhHHhhhhh
Q 042636 158 ------QILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYIFLTDHILD 204 (219)
Q Consensus 158 ------~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~l~~ 204 (219)
+.|++.++. ++.++...+.+++|+.|++.+++--..+|..+..+..
T Consensus 204 ~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 204 HSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp ----CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred cccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 888888654 5666554556899999999998766667777766654
No 95
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2.3e-13 Score=116.13 Aligned_cols=175 Identities=17% Similarity=0.127 Sum_probs=123.7
Q ss_pred cccCCcccccccccccccccc---------------ChHhHHHHhcccccceee-eeeCCCChhHHHH------HHhcc-
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA---------------DSQVLKELMKLRQLRKLG-IRPKNGNGKDVCA------LIANL- 58 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~---------------~~~~~~~l~~l~~L~~L~-l~~~~~~~~~~~~------~l~~l- 58 (219)
..+|++++++++|++|++.++ ....+..++.+++|+.|+ ++. +....+.. .+..+
T Consensus 362 ~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~--n~~~~L~~l~l~~n~i~~l~ 439 (567)
T 1dce_A 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA--AYLDDLRSKFLLENSVLKME 439 (567)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh--cccchhhhhhhhcccccccC
Confidence 468999999999999986433 234556788899999987 442 11111111 12222
Q ss_pred -CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 -ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
..|+.|++++|..... +.+..++ +|+.|++++ .++.+|..+..+++|+.|++++|.+.+.+ .++.+++|+.|
T Consensus 440 ~~~L~~L~Ls~n~l~~l---p~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L 513 (567)
T 1dce_A 440 YADVRVLHLAHKDLTVL---CHLEQLL-LVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQEL 513 (567)
T ss_dssp HTTCSEEECTTSCCSSC---CCGGGGT-TCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEE
T ss_pred ccCceEEEecCCCCCCC---cCccccc-cCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEE
Confidence 3699999999876553 3355666 999999998 88899999999999999999999998753 78899999999
Q ss_pred eec-cccCCceEEEccCCCcccceeeecccCCcceEEEcCC----cccccceee
Q 042636 137 RLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIEKG----AMPDIRELG 185 (219)
Q Consensus 137 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~p~L~~L~ 185 (219)
+++ +...+...+...+.+++|+.|++.++. +...+.... .+|+|+.|+
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 998 444332103344568999999999765 443322111 267888775
No 96
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.24 E-value=3.1e-12 Score=106.47 Aligned_cols=122 Identities=18% Similarity=0.135 Sum_probs=51.8
Q ss_pred cccCCcccccccccccccccc--ChHhHHHHhccccc-------------ceeeeeeCCCChhHHHHHHhccCCCCeEEE
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA--DSQVLKELMKLRQL-------------RKLGIRPKNGNGKDVCALIANLENLESLTV 66 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~--~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 66 (219)
.++|++++++++|++|++.++ .+..|.+++++++| ++|+++. .....++. -.++|++|++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~--~~l~~lp~---~~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN--LGLSSLPE---LPPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT--SCCSCCCS---CCTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC--CccccCCC---CcCCCCEEEc
Confidence 356777777777777777665 44555555555554 5555552 11111110 1245666666
Q ss_pred EecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 67 LMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
++|..... + .. . .+|++|++++ .++.+|.. .++|++|++++|.+.+.+ .++.+++|++|+++
T Consensus 99 ~~n~l~~l-p--~~--~-~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 99 SCNSLTEL-P--EL--P-QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVD 161 (454)
T ss_dssp CSSCCSSC-C--CC--C-TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECC
T ss_pred cCCcCCcc-c--cc--c-CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECC
Confidence 66544331 1 10 1 1455555544 33333311 134555555555544422 34455555555554
No 97
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=1.2e-11 Score=106.46 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=8.1
Q ss_pred CCccEEEEeeecCCC
Q 042636 107 KNVIRLGLDLSGLTE 121 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~ 121 (219)
++|+.|++++|.+..
T Consensus 181 ~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 181 SGLQELSVSDNQLAS 195 (622)
T ss_dssp TTCCEEECCSSCCSC
T ss_pred CCCcEEECCCCCCCC
Confidence 455555555555543
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.21 E-value=2.2e-11 Score=104.90 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=29.5
Q ss_pred cccCCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecC
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMAS 70 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 70 (219)
..+|..+. ++|++|++.++ ...++. .+++|++|+++. +....++. .+++|++|++++|.
T Consensus 53 ~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 53 TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG--NQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp SCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECS--CCCSCCCC---CCTTCCEEEECSCC
T ss_pred CccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC--CcCCcCCC---CCCCCCEEECcCCc
Confidence 44566554 56666666665 233332 456666666663 11112211 44555555555543
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.21 E-value=5.7e-12 Score=94.90 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCC
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLK 107 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~ 107 (219)
++++++|++|+++. +....-....+.++++|++|++++|......+ ..+...+ +|++|++++ .++.+ |..+..++
T Consensus 53 ~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 53 FKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLE-SLKTLMLRSNRITCVGNDSFIGLS 129 (220)
T ss_dssp GGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCS-SCCEEECTTSCCCCBCTTSSTTCT
T ss_pred hccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCc-CCCEEECCCCcCCeECHhHcCCCc
Confidence 44455555555552 11111111234445555555555544332211 1222333 555555554 34333 33344455
Q ss_pred CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|+.|++++|.+...+...+..+++|+.|+++
T Consensus 130 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 55555555555544433444455555555554
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.20 E-value=1e-11 Score=99.85 Aligned_cols=136 Identities=16% Similarity=0.078 Sum_probs=61.1
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc--cCCCCCh-hhhcC-CCccEEEEeeecCCCCCCccccCC
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG--NMKKLPD-WIFKL-KNVIRLGLDLSGLTEDPLRVPHAL 130 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~l~~-~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l 130 (219)
+.++++|++|++++|......+... .... ++..+++.+ .+..++. .+..+ ..++.|++++|.+...+...+ ..
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~-~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~ 176 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHK-IHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NG 176 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTT-CCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TT
T ss_pred hhhccccccccccccccccCCchhh-cccc-hhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cc
Confidence 4566777777777765543322111 1111 344444432 2333321 12222 345666666666654332222 33
Q ss_pred CccceeeeccccCCceEEE-ccCCCcccceeeecccCCcceEEEcCCcccccceeeeecCCCCCcch
Q 042636 131 PNLLELRLGGTYNYKLFHF-EAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPFPLWSMYI 196 (219)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 196 (219)
++|+.|.+..+.....+.. ....+++|+.|+++++ .++.+ +.+.+.+|+.|.+.++.+++.+|
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~l--p~~~~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSL--PSYGLENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCC--CSSSCTTCCEEECTTCTTCCCCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCcc--ChhhhccchHhhhccCCCcCcCC
Confidence 4555555542111111211 1233455666666543 23333 23345555555555555555554
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=3.8e-11 Score=90.35 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=56.4
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPN 132 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (219)
+.++++|++|++++|......+ ..+...+ +|++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEE-GAFEGAS-GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hccCCCCCEEECCCCcCCEECH-HHhCCCC-CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 4556666666666655433221 2334444 666666665 55554432 455666666666666665554455566666
Q ss_pred cceeeec-cccCCceEEEccCCCcccceeeeccc
Q 042636 133 LLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 133 L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~ 165 (219)
|+.|+++ +...+ ........+++|+.|++.++
T Consensus 131 L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 131 VRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSC
T ss_pred CCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCc
Confidence 6666665 22221 11112234455566655543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=5.7e-11 Score=89.39 Aligned_cols=128 Identities=15% Similarity=0.096 Sum_probs=77.7
Q ss_pred cccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCcc
Q 042636 34 RQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVI 110 (219)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~ 110 (219)
++++.|+++. +....+ ...+.++++|++|++++|......+ ..+.+++ +|++|++++ .++.+|.. +..+++|+
T Consensus 32 ~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCC
Confidence 5677777773 222222 2245667778888887766544322 3444555 778888877 66666654 45677788
Q ss_pred EEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccC
Q 042636 111 RLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 111 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~ 166 (219)
.|++++|.+...+...+..+++|+.|+++ +....- .......+++|+.|++.+++
T Consensus 108 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 108 LLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCCCCCCEEEeCCCC
Confidence 88887777777666667777778877776 333221 11113345667777776543
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=1.9e-11 Score=87.93 Aligned_cols=102 Identities=25% Similarity=0.229 Sum_probs=61.7
Q ss_pred ccccceeeeeeCCCCh-hHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCCc
Q 042636 33 LRQLRKLGIRPKNGNG-KDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNV 109 (219)
Q Consensus 33 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L 109 (219)
.++|++|+++. +... +.++..+.++++|++|++++|..... ..+...+ +|++|++++ .++. +|..+..+++|
T Consensus 23 ~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLP-KLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCS-SCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred cccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCC-CCCEEECcCCcCchHHHHHHhhCCCC
Confidence 46677777763 1111 23344456667777777777655433 3444444 777777776 5555 56555567777
Q ss_pred cEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636 110 IRLGLDLSGLTEDP-LRVPHALPNLLELRLG 139 (219)
Q Consensus 110 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~ 139 (219)
+.|++++|.+...+ ...+..+++|+.|+++
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~ 128 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLF 128 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEee
Confidence 77777777766542 2456666777777766
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=7.2e-12 Score=101.16 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=36.1
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccc---cC
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVP---HA 129 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~ 129 (219)
+.++++|++|++++|......+ ..+..++ +|+.|++++ .+..+ |..+..+++|+.|++++|.+...+...+ ..
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 84 FVPVPNLRYLDLSSNHLHTLDE-FLFSDLQ-ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred ccCCCCCCEEECCCCcCCcCCH-HHhCCCc-CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 4445555555555544322211 1222333 555555554 34332 3334445555555555555544333333 33
Q ss_pred CCccceeeec
Q 042636 130 LPNLLELRLG 139 (219)
Q Consensus 130 l~~L~~L~l~ 139 (219)
+++|+.|+++
T Consensus 162 l~~L~~L~L~ 171 (361)
T 2xot_A 162 LPKLMLLDLS 171 (361)
T ss_dssp CTTCCEEECC
T ss_pred CCcCCEEECC
Confidence 4555555554
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=2.3e-11 Score=87.53 Aligned_cols=125 Identities=20% Similarity=0.134 Sum_probs=96.8
Q ss_pred ccccccccccccc-C--hHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccC
Q 042636 10 SLMDLQKLSIIEA-D--SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQY 86 (219)
Q Consensus 10 ~l~~L~~L~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 86 (219)
...+|++|++.++ . ..++..++.+++|+.|+++. +....+ ..+.++++|++|++++|......+ ..+...+ +
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN--VGLISV-SNLPKLPKLKKLELSENRIFGGLD-MLAEKLP-N 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES--SCCCCC-SSCCCCSSCCEEEEESCCCCSCCC-HHHHHCT-T
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC--CCCCCh-hhhccCCCCCEEECcCCcCchHHH-HHHhhCC-C
Confidence 3468899998887 3 36777788999999999995 222222 667889999999999988765322 1222245 9
Q ss_pred ccEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCC---ccccCCCccceeeec
Q 042636 87 LQRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPL---RVPHALPNLLELRLG 139 (219)
Q Consensus 87 L~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 139 (219)
|+.|++++ .++.+| ..+..+++|+.|++++|.+...+. ..+..+++|++|+++
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 99999998 777766 577889999999999999987654 467899999999997
No 106
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.14 E-value=5.2e-12 Score=108.44 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=78.8
Q ss_pred cccCCcccccccccccccccc-ChHhH-HHHhcccccceeeeeeCCCChhHH-HHHHhccCCCCeEEEEecCCCcccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVL-KELMKLRQLRKLGIRPKNGNGKDV-CALIANLENLESLTVLMASKDEILDLQ 78 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~ 78 (219)
++||.++. .++++|+++++ ...++ .+|+++++|++|+++. +....+ ..++.++++|++|++++|...... ..
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~--N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~ 118 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LG 118 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GG
T ss_pred CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCC--CcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HH
Confidence 45666553 35677777766 33333 3567777777777773 222222 224566777777777776554332 22
Q ss_pred cCCCcccCccEEEecc-cCCCCCh-hhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636 79 SLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG 139 (219)
Q Consensus 79 ~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~ 139 (219)
.+.+.+ +|++|++++ .++.+|. .+..+++|++|++++|.+.... ...++.+++|++|+++
T Consensus 119 ~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 119 AFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp GGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred HhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 344444 777777776 5666553 3566777777777777765532 3455667777777776
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.13 E-value=1.2e-10 Score=88.17 Aligned_cols=127 Identities=20% Similarity=0.124 Sum_probs=53.5
Q ss_pred CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~-~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEP-GVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCH-HHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 344555554444333211 2222233 455555544 44444322 3445555555555555544433344455555555
Q ss_pred eec-cccCCceEEEccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecCC
Q 042636 137 RLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 137 ~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
+++ +... .++.....+++|+.|++.++. +..+... ...+++|+.|++.+++
T Consensus 118 ~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNKLT--ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSCCC--SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCccc--ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 554 2221 122222334455555555432 3322211 2234555555555543
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=1.4e-12 Score=105.35 Aligned_cols=15 Identities=7% Similarity=0.231 Sum_probs=7.8
Q ss_pred HHHhccc-ccceeeee
Q 042636 28 KELMKLR-QLRKLGIR 42 (219)
Q Consensus 28 ~~l~~l~-~L~~L~l~ 42 (219)
..+.+++ +|++|+++
T Consensus 44 ~~l~~~~~~L~~L~Ls 59 (362)
T 3goz_A 44 QAFANTPASVTSLNLS 59 (362)
T ss_dssp HHHHTCCTTCCEEECC
T ss_pred HHHHhCCCceeEEECc
Confidence 3444555 55555555
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=1.9e-12 Score=91.43 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=72.3
Q ss_pred ccccceeeeeeCCCCh-hHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CChhhhcCCCc
Q 042636 33 LRQLRKLGIRPKNGNG-KDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LPDWIFKLKNV 109 (219)
Q Consensus 33 l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~~~~~~l~~L 109 (219)
.++|++|+++. +... +.++..+.++++|++|++++|..... ..+...+ +|++|++++ .++. +|..+..+++|
T Consensus 16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLN-KLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCT-TCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCC-CCCEEECCCCcccchHHHHhhhCCCC
Confidence 45677777663 2111 23344456667777777776655433 3444444 777777776 5555 55555667777
Q ss_pred cEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEE---EccCCCcccceeeec
Q 042636 110 IRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFH---FEAGWFPKLQILTLF 163 (219)
Q Consensus 110 ~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~---~~~~~~~~L~~L~l~ 163 (219)
++|++++|.+...+ +..+..+++|++|+++ +...+. .. .....+++|+.|++.
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCC
Confidence 77777777776532 3556677777777776 333221 11 112345666666553
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=1.4e-10 Score=93.18 Aligned_cols=189 Identities=16% Similarity=0.084 Sum_probs=105.0
Q ss_pred cccCCcccccccccccccccc-ChHhHH-HHhcccccceeeeeeCCCChhHHH-HHHhccCCCCe-EEEEecCCCccccc
Q 042636 2 AKVHRGLGSLMDLQKLSIIEA-DSQVLK-ELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLES-LTVLMASKDEILDL 77 (219)
Q Consensus 2 ~~lP~~l~~l~~L~~L~~~~~-~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~~ 77 (219)
++||.++. +++++|++.++ ...+++ .++++++|++|+++. +...+.+. ..+.++++++. +.+.+|..... +.
T Consensus 22 t~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~ 97 (350)
T 4ay9_X 22 TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-NDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NP 97 (350)
T ss_dssp CSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEEC-CTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CT
T ss_pred CccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcC-CCCCCccChhHhhcchhhhhhhcccCCccccc-Cc
Confidence 45666653 46777777766 444544 367777777777773 21112111 22456666554 33444433332 22
Q ss_pred ccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeee-cCCCCCCccccCC-Cccceeeec-cccCCceEEEccC
Q 042636 78 QSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLS-GLTEDPLRVPHAL-PNLLELRLG-GTYNYKLFHFEAG 152 (219)
Q Consensus 78 ~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~-~~~~~~~~~l~~l-~~L~~L~l~-~~~~~~~~~~~~~ 152 (219)
..+...+ +|++|++++ .++.+|.. .....++..+++.++ .+...+...+..+ ..++.|+++ +.. ..+.....
T Consensus 98 ~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i--~~i~~~~f 174 (350)
T 4ay9_X 98 EAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIHNSAF 174 (350)
T ss_dssp TSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC--CEECTTSS
T ss_pred hhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc--cCCChhhc
Confidence 3344445 777777776 56555432 233445666666543 3443333344444 357777776 333 22322222
Q ss_pred CCcccceeeecccCCcceEEEc-CCcccccceeeeecCCCCCcchhH
Q 042636 153 WFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPFPLWSMYIFL 198 (219)
Q Consensus 153 ~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~~~l~~~~~~ 198 (219)
...+|+++.+.+++.++.++.. .+.+++|+.|+++++ ++..+|.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh
Confidence 3467888888766667766543 256789999999986 57777653
No 111
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=1.8e-11 Score=104.61 Aligned_cols=54 Identities=22% Similarity=0.149 Sum_probs=35.5
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCC-ccccCCCccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPL-RVPHALPNLLELRLG 139 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 139 (219)
+|+.+.+.. ....+|..+..+++|++|++++|.+..... ..+..+++|+.|++.
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 666666655 333456666777888888888887554332 234677888888775
No 112
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.06 E-value=2.6e-11 Score=100.90 Aligned_cols=163 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred CCcccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccC-------------CCCeEEEEecC
Q 042636 5 HRGLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLE-------------NLESLTVLMAS 70 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-------------~L~~L~l~~~~ 70 (219)
|+.+ +.++|++|++.++ .+.+|++++++++|++|+++. +...+.++..+++++ ++++|+++++.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp ------------------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccc-ccccchhhhcccCchhhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 5555 4689999998877 788999999999999999985 222223333334333 46999998876
Q ss_pred CCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEE
Q 042636 71 KDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFH 148 (219)
Q Consensus 71 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~ 148 (219)
.... +. .+.+|++|++++ .++.+|.. +++|+.|++++|.+.+.+. ..++|++|+++ +...+ ++
T Consensus 83 l~~l---p~---~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~--lp 147 (454)
T 1jl5_A 83 LSSL---PE---LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK--LP 147 (454)
T ss_dssp CSCC---CS---CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS--CC
T ss_pred cccC---CC---CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC--Cc
Confidence 5432 22 224999999998 77778743 4899999999998876421 12799999998 44432 33
Q ss_pred EccCCCcccceeeecccCCcceEEEcCCcccccceeeeecC
Q 042636 149 FEAGWFPKLQILTLFDFVAVKSVIIEKGAMPDIRELGIGPF 189 (219)
Q Consensus 149 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~p~L~~L~l~~~ 189 (219)
..+.+++|++|++.++. ++.++ ..+++|+.|++.++
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~lp---~~~~~L~~L~L~~n 183 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKKLP---DLPPSLEFIAAGNN 183 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSS
T ss_pred -ccCCCCCCCEEECCCCc-CcccC---CCcccccEEECcCC
Confidence 35567778888877643 33321 12345555555544
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=3.2e-11 Score=103.12 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=39.7
Q ss_pred cCCcccccccccccccccc--ChHhH-HHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEE
Q 042636 4 VHRGLGSLMDLQKLSIIEA--DSQVL-KELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVL 67 (219)
Q Consensus 4 lP~~l~~l~~L~~L~~~~~--~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 67 (219)
+|..+..+++|++|++.++ ..... ..++++++|++|++.. ......+......+++|++|+++
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEee
Confidence 4555677888999988877 33333 4467788888888772 22222333334556777777777
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.05 E-value=3.1e-10 Score=91.53 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=91.7
Q ss_pred cccceeeeeeCCCChhHH-HHHHh-ccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh-hhhcCCCc
Q 042636 34 RQLRKLGIRPKNGNGKDV-CALIA-NLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD-WIFKLKNV 109 (219)
Q Consensus 34 ~~L~~L~l~~~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~-~~~~l~~L 109 (219)
+.++.|+++. +....+ ...+. ++++|+.|++++|......+ ..+..++ +|++|++++ .++.++. .+..+++|
T Consensus 39 ~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVP-NLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCC-CCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 3577788873 222222 22234 77888888888876644322 3455555 888888887 6666543 46678888
Q ss_pred cEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEcc----CCCcccceeeecccCCcceEEEc-CCcccc--c
Q 042636 110 IRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEA----GWFPKLQILTLFDFVAVKSVIIE-KGAMPD--I 181 (219)
Q Consensus 110 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~--L 181 (219)
+.|++++|.+...+...+..+++|+.|+++ +.... +.... ..+++|+.|++.++. +..++.. ...++. +
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHH
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhc
Confidence 888888888876656677788888888887 43322 21111 346788888887643 4443321 122444 3
Q ss_pred ceeeeecCC
Q 042636 182 RELGIGPFP 190 (219)
Q Consensus 182 ~~L~l~~~~ 190 (219)
+.|++.+++
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 667777755
No 115
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.04 E-value=7.2e-11 Score=101.37 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=97.9
Q ss_pred cccccccccccccccc-ChHhHHHHhcccccceeeeeeCCCChh-HHHHHHhccCCCCeEEEEecCCCcccccccCCCcc
Q 042636 7 GLGSLMDLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGK-DVCALIANLENLESLTVLMASKDEILDLQSLSSPP 84 (219)
Q Consensus 7 ~l~~l~~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 84 (219)
....+.+|++++...+ ....+..+..+++|+.+++.. ..... .-...+.++.+++.++++.+......+ ..+...+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~-~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~-~~~~~~~ 469 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLS 469 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT-SEEESTTSSCTTTTCTTCCEEECTTSCCEECCT-TTTTTCT
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhh-ccccccccccccccccccccccccccccccccc-cccccch
Confidence 3445667777776555 222333455677777776653 11000 011224556777777776654433222 2233333
Q ss_pred cCccEEEecc-c-CCC-CChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCccccee
Q 042636 85 QYLQRLYLTG-N-MKK-LPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQIL 160 (219)
Q Consensus 85 ~~L~~L~l~~-~-~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L 160 (219)
+++.|++++ . ... .|..+..+++|+.|++++|++...+...+.++++|+.|+++ +...+ ........+++|+.|
T Consensus 470 -~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 470 -SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVL 547 (635)
T ss_dssp -TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEE
T ss_pred -hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEE
Confidence 777777765 2 222 45556667777777777777766555667777777777776 33321 112233456777777
Q ss_pred eecccCCcceEEE-cCCcc-cccceeeeecCC
Q 042636 161 TLFDFVAVKSVII-EKGAM-PDIRELGIGPFP 190 (219)
Q Consensus 161 ~l~~~~~~~~~~~-~~~~~-p~L~~L~l~~~~ 190 (219)
++.++. +..+.. ....+ ++|+.|++.+++
T Consensus 548 ~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 548 DYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp ECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred ECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 777543 333221 12233 467777776644
No 116
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=8.5e-13 Score=109.56 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=55.1
Q ss_pred ccccccccccccccc--ChHhHHHHh-----cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc
Q 042636 8 LGSLMDLQKLSIIEA--DSQVLKELM-----KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD 76 (219)
Q Consensus 8 l~~l~~L~~L~~~~~--~~~~~~~l~-----~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 76 (219)
+.++++|++|++.++ ....+..+. ..++|++|+++. +.. ...++..+.++++|++|++++|.......
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES-CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT-SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC-CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 444556666665555 122222221 234666666653 111 12345556666777777777664422110
Q ss_pred --c-ccCC-CcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCC
Q 042636 77 --L-QSLS-SPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLT 120 (219)
Q Consensus 77 --~-~~~~-~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~ 120 (219)
+ +.+. ..+ +|++|++++ .++. ++..+..+++|++|++++|.+.
T Consensus 245 ~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 245 AELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 0 1111 123 677777765 4443 4445555666777777666554
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.01 E-value=1.5e-11 Score=99.37 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=72.7
Q ss_pred cccccc-cccccccccc--ChHhHHHHhcc-----cccceeeeee---CCCChhHHHHHHhcc-CCCCeEEEEecCCCcc
Q 042636 7 GLGSLM-DLQKLSIIEA--DSQVLKELMKL-----RQLRKLGIRP---KNGNGKDVCALIANL-ENLESLTVLMASKDEI 74 (219)
Q Consensus 7 ~l~~l~-~L~~L~~~~~--~~~~~~~l~~l-----~~L~~L~l~~---~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~ 74 (219)
.+.+++ +|++|++.++ ....+..+..+ ++|++|+++. .......+...+..+ ++|++|++++|.....
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 355566 7888888777 33334444443 7888888875 112233444455555 7788888887765332
Q ss_pred cc--c-ccCCCcccCccEEEecc-cCCC-----CChhhhcCC-CccEEEEeeecCCCCCCc----cccCC-Cccceeeec
Q 042636 75 LD--L-QSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLK-NVIRLGLDLSGLTEDPLR----VPHAL-PNLLELRLG 139 (219)
Q Consensus 75 ~~--~-~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~-~L~~L~l~~~~~~~~~~~----~l~~l-~~L~~L~l~ 139 (219)
.. + ..+...+.+|++|++++ .++. ++..+...+ +|++|++++|.+...... .+... ++|+.|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 21 1 11222123777777776 4442 233334444 677777777766544322 22334 366666666
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.99 E-value=8.9e-11 Score=82.69 Aligned_cols=124 Identities=22% Similarity=0.168 Sum_probs=94.7
Q ss_pred cccccccccccc-C--hHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 11 LMDLQKLSIIEA-D--SQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 11 l~~L~~L~~~~~-~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
..++++|++.++ . ..++..++.+++|+.|+++. +....+ ..++++++|++|++++|......+ ..+...+ +|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~-~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTIN--VGLTSI-ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCP-NL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTT--SCCCCC-TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCT-TC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcC--CCCCCc-hhhhcCCCCCEEECCCCcccchHH-HHhhhCC-CC
Confidence 468889998887 3 36777778999999999984 222222 667889999999999987765332 1222244 89
Q ss_pred cEEEecc-cCCCCC--hhhhcCCCccEEEEeeecCCCCCC---ccccCCCccceeeec
Q 042636 88 QRLYLTG-NMKKLP--DWIFKLKNVIRLGLDLSGLTEDPL---RVPHALPNLLELRLG 139 (219)
Q Consensus 88 ~~L~l~~-~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 139 (219)
++|++++ .++.++ ..+..+++|++|++++|.+...+. ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999998 777754 678889999999999999887654 467889999999874
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.98 E-value=7.4e-12 Score=103.91 Aligned_cols=133 Identities=22% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCcccccccccccccccc--ChHhHHHHh-----cccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCc
Q 042636 5 HRGLGSLMDLQKLSIIEA--DSQVLKELM-----KLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDE 73 (219)
Q Consensus 5 P~~l~~l~~L~~L~~~~~--~~~~~~~l~-----~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~ 73 (219)
|..+.++++|++|++.++ ....+..+. ..++|++|+++. +.. ...+...+.++++|++|++++|....
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCC-CCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 444555555566555554 122222221 133455555553 111 12344555566677777776654322
Q ss_pred ccc--c-ccCC-CcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCCC-----ccccCCCccceeee
Q 042636 74 ILD--L-QSLS-SPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDPL-----RVPHALPNLLELRL 138 (219)
Q Consensus 74 ~~~--~-~~~~-~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~l~~l~~L~~L~l 138 (219)
... + ..+. ..+ +|++|++++ .++. ++.++..+++|++|++++|.+..... .....+++|++|++
T Consensus 185 ~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 111 0 1111 122 677777765 4443 34455566777777777666543221 11224566666666
Q ss_pred c
Q 042636 139 G 139 (219)
Q Consensus 139 ~ 139 (219)
+
T Consensus 264 ~ 264 (461)
T 1z7x_W 264 W 264 (461)
T ss_dssp T
T ss_pred c
Confidence 5
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=1.2e-12 Score=96.89 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=88.3
Q ss_pred ccccccccccccc--------ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCC
Q 042636 10 SLMDLQKLSIIEA--------DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLS 81 (219)
Q Consensus 10 ~l~~L~~L~~~~~--------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 81 (219)
+..+++.+++..+ ...++..++++++|++|+++. +....++ .+.++++|+.|++++|...... ..+.
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~--n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~--~~~~ 90 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALST--NNIEKIS-SLSGMENLRILSLGRNLIKKIE--NLDA 90 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE--EEESCCC-CHHHHTTCCEEEEEEEEECSCS--SHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCC--CCCcccc-ccccCCCCCEEECCCCCccccc--chhh
Confidence 3445555555444 233455899999999999986 1112222 5678899999999998665321 1122
Q ss_pred CcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCC-CccccCCCccceeeec
Q 042636 82 SPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG 139 (219)
Q Consensus 82 ~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~ 139 (219)
.++ +|+.|++++ .++.+| .+..+++|+.|++++|.+...+ ...+..+++|++|+++
T Consensus 91 ~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 91 VAD-TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp HHH-HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred cCC-cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 234 899999998 777776 6778899999999999988643 2467889999999998
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.97 E-value=1.4e-10 Score=99.17 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=38.8
Q ss_pred CCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEE--cCCcccccceeeeecCCCCCcchhHHhhh
Q 042636 130 LPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVII--EKGAMPDIRELGIGPFPLWSMYIFLTDHI 202 (219)
Q Consensus 130 l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~l~~~~~~~~~l 202 (219)
+++|+.|+++ +...+..+.....++++|+.|++.+|.. ++... ....+|+|+.|++.+|+. .+.|+..+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~---~~~~~~~l 526 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV---SFGACKLL 526 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC---BHHHHHHH
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC---CHHHHHHH
Confidence 5666666665 2222111111113468888888887764 32211 123478899999999875 34555554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.96 E-value=1.9e-09 Score=79.30 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=63.9
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
++++|++++ .++.+|..+..+++|+.|++++|.+...+...+..+++|+.|+++ +... .........+++|+.|++.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECC
Confidence 677777776 666677677777777777777777776655667777777777776 3322 1111123456677777777
Q ss_pred ccCCcceEEEc-CCcccccceeeeecCC
Q 042636 164 DFVAVKSVIIE-KGAMPDIRELGIGPFP 190 (219)
Q Consensus 164 ~~~~~~~~~~~-~~~~p~L~~L~l~~~~ 190 (219)
++. +..++.. ...+++|+.|++.+++
T Consensus 111 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 111 GND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 543 4433321 2346777777777654
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=1.8e-09 Score=79.31 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=49.8
Q ss_pred CccEEEecc-cCCCCCh--hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceee
Q 042636 86 YLQRLYLTG-NMKKLPD--WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILT 161 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~ 161 (219)
++++|++++ .++.++. .+..+++|++|++++|.+.......+..+++|+.|+++ +... .........+++|+.|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEE
Confidence 555555555 4444443 24555566666666665555444455556666666665 2221 11111123445566666
Q ss_pred ecccCCcceE-EEcCCcccccceeeeecCC
Q 042636 162 LFDFVAVKSV-IIEKGAMPDIRELGIGPFP 190 (219)
Q Consensus 162 l~~~~~~~~~-~~~~~~~p~L~~L~l~~~~ 190 (219)
+.++. +..+ +...+.+++|+.|++.+++
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 109 LYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 65433 3322 1122345566666666554
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=4.7e-10 Score=82.53 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=62.1
Q ss_pred cccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHH--HHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636 15 QKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCA--LIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY 91 (219)
Q Consensus 15 ~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 91 (219)
+++++.++ ...+|..+. .+++.|+++. +....+.. .+.++++|++|++++|......+ ..+..++ +|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGAS-HIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCT-TCCEEE
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcc-cCCEEE
Confidence 34444443 333443322 2666666663 22222221 24566666777766665543322 2334444 666666
Q ss_pred ecc-cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 92 LTG-NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 92 l~~-~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+++ .++.++ ..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 665 555433 234556666666666666665444555666666666665
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.94 E-value=8.4e-12 Score=92.33 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=104.7
Q ss_pred HHHHhcccccceeeeee-----CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC
Q 042636 27 LKELMKLRQLRKLGIRP-----KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP 100 (219)
Q Consensus 27 ~~~l~~l~~L~~L~l~~-----~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~ 100 (219)
.+.+....+++.+++.. .......++..+.++++|++|++++|..... +.+...+ +|+.|++++ .++.+|
T Consensus 11 ~~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~~~~~l~-~L~~L~l~~n~l~~l~ 86 (198)
T 1ds9_A 11 IRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---SSLSGME-NLRILSLGRNLIKKIE 86 (198)
T ss_dssp HHHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---CCHHHHT-TCCEEEEEEEEECSCS
T ss_pred HHHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---cccccCC-CCCEEECCCCCccccc
Confidence 34455666666666654 1223344555788999999999998866542 3555555 999999998 788888
Q ss_pred hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcceEEEc-----
Q 042636 101 DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVKSVIIE----- 174 (219)
Q Consensus 101 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----- 174 (219)
..+..+++|+.|++++|.+... ..+..+++|+.|+++ +....-........+++|+.|++.+++ +......
T Consensus 87 ~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~ 163 (198)
T 1ds9_A 87 NLDAVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATS 163 (198)
T ss_dssp SHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHH
T ss_pred chhhcCCcCCEEECcCCcCCcC--CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchH
Confidence 8888889999999999998874 357789999999998 444321111134568899999998764 3221110
Q ss_pred ------CCcccccceee
Q 042636 175 ------KGAMPDIRELG 185 (219)
Q Consensus 175 ------~~~~p~L~~L~ 185 (219)
...+|+|+.|+
T Consensus 164 ~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHHCSSCSEEC
T ss_pred HHHHHHHHhCCCcEEEC
Confidence 23478888776
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=6.3e-11 Score=85.92 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=79.2
Q ss_pred hcccccceeeeeeCCCChhHHHHHHhccC-CCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhh-hcCC
Q 042636 31 MKLRQLRKLGIRPKNGNGKDVCALIANLE-NLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWI-FKLK 107 (219)
Q Consensus 31 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~-~~l~ 107 (219)
.++.+|+.|++++ +....+ ..+..+. +|++|++++|..... +.+...+ +|++|++++ .++.+|..+ ..++
T Consensus 16 ~~~~~L~~L~l~~--n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 16 TNAVRDRELDLRG--YKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLR-RLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp ECTTSCEEEECTT--SCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCS-SCCEEECCSSCCCEECSCHHHHCT
T ss_pred CCcCCceEEEeeC--CCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCC-CCCEEECCCCcccccCcchhhcCC
Confidence 4566777777773 122222 2244444 788888888765543 4455555 888888887 666666443 7788
Q ss_pred CccEEEEeeecCCCCC-CccccCCCccceeeec-cccCCceEEE----ccCCCcccceeeecccC
Q 042636 108 NVIRLGLDLSGLTEDP-LRVPHALPNLLELRLG-GTYNYKLFHF----EAGWFPKLQILTLFDFV 166 (219)
Q Consensus 108 ~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~-~~~~~~~~~~----~~~~~~~L~~L~l~~~~ 166 (219)
+|+.|++++|.+...+ ...+..+++|+.|+++ +.... ++. ....+++|+.|++.++.
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888876543 2356778888888887 43321 111 13356778888776543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.92 E-value=1.1e-10 Score=84.56 Aligned_cols=128 Identities=17% Similarity=0.132 Sum_probs=91.0
Q ss_pred hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccc
Q 042636 56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL 134 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 134 (219)
.++.+|++|++++|..... +.+.....+|+.|++++ .++.+ ..+..+++|+.|++++|.+...+...+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4567899999998876543 33333333899999998 77766 4677889999999999998876545568899999
Q ss_pred eeeec-cccCCceEEE--ccCCCcccceeeecccCCcceEEEc----CCcccccceeeeecCC
Q 042636 135 ELRLG-GTYNYKLFHF--EAGWFPKLQILTLFDFVAVKSVIIE----KGAMPDIRELGIGPFP 190 (219)
Q Consensus 135 ~L~l~-~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~p~L~~L~l~~~~ 190 (219)
.|+++ +.... ++. ....+++|+.|++.+++ +..++.. .+.+|+|+.|++.+++
T Consensus 92 ~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVE--LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCc--chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99998 44422 221 33467889999998765 3333221 3357899999988875
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.91 E-value=1e-09 Score=93.61 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=103.0
Q ss_pred cccccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEE
Q 042636 13 DLQKLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLY 91 (219)
Q Consensus 13 ~L~~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 91 (219)
++++|++.++ ...+|..+ +++|++|+++. +....++ ..+++|+.|++++|..... +.+. .+|++|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~--N~l~~ip---~~l~~L~~L~Ls~N~l~~i---p~l~---~~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQ--NALISLP---ELPASLEYLDACDNRLSTL---PELP---ASLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCS--SCCSCCC---CCCTTCCEEECCSSCCSCC---CCCC---TTCCEEE
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcC--CCCcccc---cccCCCCEEEccCCCCCCc---chhh---cCCCEEE
Confidence 6777777766 33355444 36788888874 2222333 4467888888888766442 2222 2788888
Q ss_pred ecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeecccCCcc
Q 042636 92 LTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLFDFVAVK 169 (219)
Q Consensus 92 l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 169 (219)
+++ .++.+|. .+++|+.|++++|.+...+. .+++|+.|+++ +...+ ++. .. ++|+.|++.++. ++
T Consensus 127 Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~ 193 (571)
T 3cvr_A 127 VDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LE 193 (571)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CS
T ss_pred CCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CC
Confidence 887 6777776 57888888888888876432 56888888888 44332 222 21 788899888653 55
Q ss_pred eEEEcCCccccc-------ceeeeecCCCCCcchhHHhhhh
Q 042636 170 SVIIEKGAMPDI-------RELGIGPFPLWSMYIFLTDHIL 203 (219)
Q Consensus 170 ~~~~~~~~~p~L-------~~L~l~~~~~l~~~~~~~~~l~ 203 (219)
.++. .. ++| +.|++.+| .+..+|.++..+.
T Consensus 194 ~lp~-~~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 194 SLPA-VP--VRNHHSEETEIFFRCREN-RITHIPENILSLD 230 (571)
T ss_dssp SCCC-CC----------CCEEEECCSS-CCCCCCGGGGGSC
T ss_pred chhh-HH--HhhhcccccceEEecCCC-cceecCHHHhcCC
Confidence 4433 21 256 88899886 5667777666543
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.88 E-value=8.5e-10 Score=96.79 Aligned_cols=105 Identities=17% Similarity=0.027 Sum_probs=50.8
Q ss_pred HHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChhhhcCC
Q 042636 29 ELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDWIFKLK 107 (219)
Q Consensus 29 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~~~~l~ 107 (219)
.+..+++|+.|+++. +....++..+.++++|++|++++|..... + ..+..++ +|+.|++++ .++.+|..+..+.
T Consensus 219 ~~~~l~~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p-~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 219 SKYDDQLWHALDLSN--LQIFNISANIFKYDFLTRLYLNGNSLTEL-P-AEIKNLS-NLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp ---CCCCCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTTSCCSCC-C-GGGGGGT-TCCEEECTTSCCSSCCSSGGGGT
T ss_pred hhccCCCCcEEECCC--CCCCCCChhhcCCCCCCEEEeeCCcCccc-C-hhhhCCC-CCCEEeCcCCcCCccChhhcCCC
Confidence 344555555555552 22223333344555555665555544321 1 2233333 555556555 4555555555555
Q ss_pred CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|++|++++|.+...+ ..++.+++|+.|+++
T Consensus 294 ~L~~L~L~~N~l~~lp-~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLP-WEFGNLCNLQFLGVE 324 (727)
T ss_dssp TCSEEECCSSCCCCCC-SSTTSCTTCCCEECT
T ss_pred CCCEEECCCCCCCccC-hhhhcCCCccEEeCC
Confidence 5666666555554332 235555556655555
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.86 E-value=2.6e-09 Score=93.72 Aligned_cols=102 Identities=27% Similarity=0.298 Sum_probs=51.7
Q ss_pred CccEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeeec
Q 042636 86 YLQRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTLF 163 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 163 (219)
+|+.|++++ .+..+|..+..+++|++|+|++|.+... +..+..+++|+.|+|+ +.+. .++...+.+++|+.|++.
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECC
Confidence 555555555 4445555555555556666655555532 2344555555555555 3222 222223345555555555
Q ss_pred ccCCcceEEEcCCcccccceeeeecCCC
Q 042636 164 DFVAVKSVIIEKGAMPDIRELGIGPFPL 191 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 191 (219)
++. ++.++...+.+++|+.|++.+++-
T Consensus 302 ~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 302 DNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 432 344443344556666666666543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.86 E-value=3e-09 Score=78.29 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=77.0
Q ss_pred ccccccc-ChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc
Q 042636 16 KLSIIEA-DSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG 94 (219)
Q Consensus 16 ~L~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 94 (219)
+++..++ ...+|..+ .++|++|+++. +....++..+.++++|+.|++++|......+ ..+..++ +|++|++++
T Consensus 14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~--n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~-~L~~L~Ls~ 87 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI--PRDVTELYLDG--NQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMT-QLLTLILSY 87 (193)
T ss_dssp EEECTTSCCSSCCSCC--CTTCCEEECCS--SCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCT-TCCEEECCS
T ss_pred EEEcCCCCCCcCCCCC--CCCCCEEECCC--CcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCC-CCCEEECCC
Confidence 3444433 33444332 25777887773 2233444567778888888888876654322 3455555 888888887
Q ss_pred -cCCCCCh-hhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 95 -NMKKLPD-WIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 95 -~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.++.++. .+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 6666553 46777888888888888877666667778888888886
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.75 E-value=2.7e-08 Score=71.88 Aligned_cols=103 Identities=22% Similarity=0.181 Sum_probs=61.2
Q ss_pred CccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccceeeec-cccCCceEEEccCCCcccceeee
Q 042636 86 YLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG-GTYNYKLFHFEAGWFPKLQILTL 162 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~~~~~~~~L~~L~l 162 (219)
++++|++++ .++.++.. +..+++|++|++++|.+...+...+..+++|+.|+++ +.... ........+++|+.|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCcccCEEEC
Confidence 677777766 55555543 4566777777777777766555556677777777776 33321 11111234567777777
Q ss_pred cccCCcceEEEcC-CcccccceeeeecCC
Q 042636 163 FDFVAVKSVIIEK-GAMPDIRELGIGPFP 190 (219)
Q Consensus 163 ~~~~~~~~~~~~~-~~~p~L~~L~l~~~~ 190 (219)
.++. +..++... ..+++|+.|++.+++
T Consensus 108 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 7543 44433222 346777777777765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=3.8e-08 Score=71.10 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=34.8
Q ss_pred hccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcc
Q 042636 56 ANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNL 133 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 133 (219)
.++++|++|++++|......+ ..+...+ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPD-GVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred cCcccccEEECCCCcceEeCh-hHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 444555555555443322111 1122233 455555544 34443322 2344455555555554444333334444455
Q ss_pred ceeeec
Q 042636 134 LELRLG 139 (219)
Q Consensus 134 ~~L~l~ 139 (219)
+.|+++
T Consensus 127 ~~L~l~ 132 (177)
T 2o6r_A 127 QKIWLH 132 (177)
T ss_dssp CEEECC
T ss_pred CEEEec
Confidence 555444
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.72 E-value=7.6e-10 Score=94.54 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=98.8
Q ss_pred cccccccccccccc--ChH-hHHHHhcccccceeeeeeCCCChhHHHH-HHhccCCCCeEEEEec--------CCCcccc
Q 042636 9 GSLMDLQKLSIIEA--DSQ-VLKELMKLRQLRKLGIRPKNGNGKDVCA-LIANLENLESLTVLMA--------SKDEILD 76 (219)
Q Consensus 9 ~~l~~L~~L~~~~~--~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~--------~~~~~~~ 76 (219)
.++++|++|++.++ ... +..-+.++++|++|++.. + ....... ....+++|+.|+++++ .......
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~-~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD-Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG-G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC-c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 35677788877766 332 233356788888888873 2 2222233 3335788888888542 1111111
Q ss_pred cccCC-CcccCccEEEecc-cCCC-CChhh-hcCCCccEEEEee------ecCCCCCC-----ccccCCCccceeeeccc
Q 042636 77 LQSLS-SPPQYLQRLYLTG-NMKK-LPDWI-FKLKNVIRLGLDL------SGLTEDPL-----RVPHALPNLLELRLGGT 141 (219)
Q Consensus 77 ~~~~~-~~~~~L~~L~l~~-~~~~-l~~~~-~~l~~L~~L~l~~------~~~~~~~~-----~~l~~l~~L~~L~l~~~ 141 (219)
+..+. ..+ +|++|.+.. .++. .+..+ ..+++|+.|+++. +.+...+. ..+..+++|+.|++++.
T Consensus 364 l~~l~~~~~-~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~ 442 (594)
T 2p1m_B 364 LVSVSMGCP-KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442 (594)
T ss_dssp HHHHHHHCT-TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHhch-hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc
Confidence 11111 133 788886654 4433 11222 3578899999982 33332211 12456788999988542
Q ss_pred cCCceEEEccCCCcccceeeecccCCcceEEE--cCCcccccceeeeecCCC
Q 042636 142 YNYKLFHFEAGWFPKLQILTLFDFVAVKSVII--EKGAMPDIRELGIGPFPL 191 (219)
Q Consensus 142 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~p~L~~L~l~~~~~ 191 (219)
.....+......+++|+.|++.++. +.+... -...+|+|+.|++.+|+.
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 2111111111236789999998765 322111 113479999999999975
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=1.3e-07 Score=68.24 Aligned_cols=54 Identities=33% Similarity=0.387 Sum_probs=33.0
Q ss_pred CccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 86 YLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
++++|++++ .++.+ |..+..+++|+.|++++|.+...+...+..+++|+.|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 666666665 55554 3445566666666666666665544455666666666665
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.57 E-value=5.1e-08 Score=70.46 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=54.4
Q ss_pred CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 567777777766544322 3344455 788888877 66666654 3677888888888888777655567778888888
Q ss_pred eec
Q 042636 137 RLG 139 (219)
Q Consensus 137 ~l~ 139 (219)
+++
T Consensus 111 ~L~ 113 (174)
T 2r9u_A 111 YLY 113 (174)
T ss_dssp ECC
T ss_pred EeC
Confidence 876
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.55 E-value=1.2e-07 Score=68.24 Aligned_cols=99 Identities=24% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCC-ChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636 61 LESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKL-PDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL 138 (219)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 138 (219)
.+.++++++...... ..+ +.++++|++++ .++.+ |..+..+++|++|++++|.+...+...+..+++|+.|++
T Consensus 11 ~~~l~~s~n~l~~ip--~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLASVP--TGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCSSCC--SCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccC--ccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 356666655443321 111 13777777776 66665 445667777788888777777665556677777777777
Q ss_pred c-cccCCceEEE-ccCCCcccceeeecccC
Q 042636 139 G-GTYNYKLFHF-EAGWFPKLQILTLFDFV 166 (219)
Q Consensus 139 ~-~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 166 (219)
+ +.... +.. ....+++|+.|++.+++
T Consensus 86 ~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDNQLKS--IPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccCE--eCHHHhcCCCCCCEEEeCCCC
Confidence 6 33321 111 13345666666666543
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.45 E-value=5e-07 Score=64.85 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCcccee
Q 042636 59 ENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLEL 136 (219)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 136 (219)
++|++|++++|......+ ..+..++ +|++|++++ .++.+|.. +..+++|+.|++++|.+...+...+..+++|+.|
T Consensus 30 ~~l~~L~L~~N~i~~~~~-~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEP-GVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccCh-hhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEE
Confidence 567777777765544322 3344444 777777776 66666544 4667778888887777776655567777778777
Q ss_pred eec
Q 042636 137 RLG 139 (219)
Q Consensus 137 ~l~ 139 (219)
+++
T Consensus 108 ~L~ 110 (170)
T 3g39_A 108 WLL 110 (170)
T ss_dssp ECC
T ss_pred EeC
Confidence 776
No 139
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=9.5e-08 Score=68.82 Aligned_cols=98 Identities=8% Similarity=-0.035 Sum_probs=66.9
Q ss_pred CCccEEEEeeecCCCCCCccccCCCccceeeecccc--CCceEEEccC---CCcccceeeecccCCcceEEE-cCCcccc
Q 042636 107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTY--NYKLFHFEAG---WFPKLQILTLFDFVAVKSVII-EKGAMPD 180 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~-~~~~~p~ 180 (219)
-.|+.|++++|.++...+..+..+++|+.|+++.|. ....+..... ..++|++|++.+|.++++-.+ ....+|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999998877667777889999999998443 2221111111 135799999999887765221 1235899
Q ss_pred cceeeeecCCCCCcchhHHhhhhh
Q 042636 181 IRELGIGPFPLWSMYIFLTDHILD 204 (219)
Q Consensus 181 L~~L~l~~~~~l~~~~~~~~~l~~ 204 (219)
|+.|++++|+.+......+..+..
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~ 164 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKT 164 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHH
T ss_pred CCEEECCCCCCCCchHHHHHHHHH
Confidence 999999999988765544444433
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1e-08 Score=83.00 Aligned_cols=34 Identities=18% Similarity=0.047 Sum_probs=17.3
Q ss_pred CCCccEEEEeeecCCCCCCc----cccCCCccceeeec
Q 042636 106 LKNVIRLGLDLSGLTEDPLR----VPHALPNLLELRLG 139 (219)
Q Consensus 106 l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~ 139 (219)
..+|+.|++++|.+...... .+...++|++|+++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls 191 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL 191 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC
Confidence 34566666666655432211 22345566666665
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.16 E-value=3.4e-06 Score=67.22 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=56.2
Q ss_pred hHhHHHHhcccccceeeeeeCCCChhHHH-HHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCCh
Q 042636 24 SQVLKELMKLRQLRKLGIRPKNGNGKDVC-ALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLPD 101 (219)
Q Consensus 24 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~~ 101 (219)
..+|. +..+++|+.|+++. .+....+. ..+.++++|+.|++++|......+ ..+..++ +|++|++++ .++.+|.
T Consensus 22 ~~ip~-l~~~~~L~~L~l~~-~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 22 DSLHH-LPGAENLTELYIEN-QQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTP-RLSRLNLSFNALESLSW 97 (347)
T ss_dssp TTTTT-SCSCSCCSEEECCS-CSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCS-CCCEEECCSSCCSCCCS
T ss_pred CccCC-CCCCCCeeEEEccC-CCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCc-CCCEEeCCCCccceeCH
Confidence 34566 77777777777761 12222222 346677777777777776544322 2334444 777777776 6666665
Q ss_pred hhhcCCCccEEEEeeecCCC
Q 042636 102 WIFKLKNVIRLGLDLSGLTE 121 (219)
Q Consensus 102 ~~~~l~~L~~L~l~~~~~~~ 121 (219)
.......|+.|++.+|.+..
T Consensus 98 ~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTTCSCCCCEEECCSSCCCC
T ss_pred HHcccCCceEEEeeCCCccC
Confidence 44333337777777776654
No 142
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=7.3e-07 Score=71.84 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=69.9
Q ss_pred Hhcccccceeeeee-CCC---C----hhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-C
Q 042636 30 LMKLRQLRKLGIRP-KNG---N----GKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-L 99 (219)
Q Consensus 30 l~~l~~L~~L~l~~-~~~---~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l 99 (219)
+.++++|+.|.+.. ... . ...+...+..+++|+.|+++++... .+..+. .+ +|++|.+.. .+.. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---~l~~~~-~~-~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---SIGKKP-RP-NLKSLEIISGGLPDSV 209 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---BCCSCB-CT-TCSEEEEECSBCCHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---eecccc-CC-CCcEEEEecCCCChHH
Confidence 34566777776642 100 0 1123344556667777777664211 112221 33 677777754 3221 0
Q ss_pred Chhh--hcCCCccEEEEeee--cCCCCC-C----ccc--cCCCccceeeeccccCCce---EEEccCCCcccceeeeccc
Q 042636 100 PDWI--FKLKNVIRLGLDLS--GLTEDP-L----RVP--HALPNLLELRLGGTYNYKL---FHFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 100 ~~~~--~~l~~L~~L~l~~~--~~~~~~-~----~~l--~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~ 165 (219)
...+ ..+++|++|+++.+ ...... . ..+ ..+|+|+.|.+.++...+. .......+++|++|+++.+
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 0111 24667777777532 111110 1 111 2467777777752221110 0111234667777777543
Q ss_pred CCcceEE---EcC--CcccccceeeeecCC
Q 042636 166 VAVKSVI---IEK--GAMPDIRELGIGPFP 190 (219)
Q Consensus 166 ~~~~~~~---~~~--~~~p~L~~L~l~~~~ 190 (219)
.+++.. +.. ..+++|+.|++.+|.
T Consensus 290 -~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 290 -VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp -CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred -CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 233210 011 235667777776653
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.06 E-value=3e-06 Score=67.57 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=41.0
Q ss_pred CCCcccCccEEEecc--cCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 80 LSSPPQYLQRLYLTG--NMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 80 ~~~~~~~L~~L~l~~--~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+.... +|++|++++ .++.+| .++..+++|+.|+|++|.+...+...+..+++|+.|+|+
T Consensus 27 l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 27 LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 44444 677888863 566655 456677788888888777776656667777888888877
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.01 E-value=3.4e-06 Score=67.97 Aligned_cols=157 Identities=22% Similarity=0.337 Sum_probs=94.8
Q ss_pred ccccceeeeee-CCC--C----hhHHHHHHhccCCCCeEEEEecCCCc--c--c---cccc-CCCcccCccEEEecccC-
Q 042636 33 LRQLRKLGIRP-KNG--N----GKDVCALIANLENLESLTVLMASKDE--I--L---DLQS-LSSPPQYLQRLYLTGNM- 96 (219)
Q Consensus 33 l~~L~~L~l~~-~~~--~----~~~~~~~l~~l~~L~~L~l~~~~~~~--~--~---~~~~-~~~~~~~L~~L~l~~~~- 96 (219)
...++.|.+.. ... . ...+.+++.++++|+.|.+....... . . .+.. +..+| +|++|.++++.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P-~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMP-LLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCT-TCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCC-CCcEEEEeCCCC
Confidence 44566776653 111 1 12344456678999999997643211 0 0 1112 23345 99999998732
Q ss_pred CCCChhhhcCCCccEEEEeeecCCCCCCcccc--CCCccceeeec-c--ccCCce-E-----EEccCCCcccceeeeccc
Q 042636 97 KKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPH--ALPNLLELRLG-G--TYNYKL-F-----HFEAGWFPKLQILTLFDF 165 (219)
Q Consensus 97 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~-~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~ 165 (219)
..++. + ..++|++|++..|.+.......+. .+|+|++|.|+ + ...+.. + ......||+|+.|.+.++
T Consensus 185 l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 23443 2 378999999998887655444443 79999999986 2 222221 1 112245899999999876
Q ss_pred CCcce---EEEcCCcccccceeeeecCCCCC
Q 042636 166 VAVKS---VIIEKGAMPDIRELGIGPFPLWS 193 (219)
Q Consensus 166 ~~~~~---~~~~~~~~p~L~~L~l~~~~~l~ 193 (219)
..... .....+.+|+|+.|+++++ .+.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~ 292 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAG-VLT 292 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSS-CCB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCC-CCC
Confidence 54321 1122346899999999875 444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=5.8e-07 Score=72.75 Aligned_cols=154 Identities=16% Similarity=0.105 Sum_probs=95.8
Q ss_pred cccccccccccc--ChHhHHHHhcc-----cccceeeeeeCCCChhHHHHHH-hccCCCCeEEEEecCCCcccc--c-cc
Q 042636 11 LMDLQKLSIIEA--DSQVLKELMKL-----RQLRKLGIRPKNGNGKDVCALI-ANLENLESLTVLMASKDEILD--L-QS 79 (219)
Q Consensus 11 l~~L~~L~~~~~--~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~--~-~~ 79 (219)
+.+|++|++.++ .......+..+ ++|++|+++. +.........+ ..+.+|+.|++++|....... + ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 457888888877 44434444333 6899999984 33333333333 345689999999987643321 1 11
Q ss_pred C-CCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeecCCCCC----CccccCCCccceeeec-cccCCceE
Q 042636 80 L-SSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSGLTEDP----LRVPHALPNLLELRLG-GTYNYKLF 147 (219)
Q Consensus 80 ~-~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~-~~~~~~~~ 147 (219)
+ ...+ +|++|++++ .++. ++..+...++|++|++++|.+.+.. ...+...++|+.|+++ +.+.....
T Consensus 150 L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 1 1223 899999987 5543 3444567889999999999886533 2345667899999998 43322111
Q ss_pred ---EEccCCCcccceeeecccC
Q 042636 148 ---HFEAGWFPKLQILTLFDFV 166 (219)
Q Consensus 148 ---~~~~~~~~~L~~L~l~~~~ 166 (219)
.......+.|++|++.++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 0111134789999998765
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.2e-05 Score=57.75 Aligned_cols=83 Identities=12% Similarity=0.003 Sum_probs=41.6
Q ss_pred ccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCc---ccCccEEEecc--cCCC-CChhhhcCCC
Q 042636 35 QLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSP---PQYLQRLYLTG--NMKK-LPDWIFKLKN 108 (219)
Q Consensus 35 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~--~~~~-l~~~~~~l~~ 108 (219)
+|+.|++++ +....+....+.++++|++|++++|.......+..+... ..+|++|++++ .+++ --..+..+++
T Consensus 62 ~L~~LDLs~-~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATD-SCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEES-CCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcC-CCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 455566653 223333344455566666666666543222222223221 11466666654 2332 0123456788
Q ss_pred ccEEEEeeec
Q 042636 109 VIRLGLDLSG 118 (219)
Q Consensus 109 L~~L~l~~~~ 118 (219)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888875
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=2.8e-05 Score=61.56 Aligned_cols=96 Identities=16% Similarity=0.064 Sum_probs=64.3
Q ss_pred CccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCCCCCccccCCCccc-eeeeccccCCceEE-EccCCCcccceee
Q 042636 86 YLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTEDPLRVPHALPNLL-ELRLGGTYNYKLFH-FEAGWFPKLQILT 161 (219)
Q Consensus 86 ~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~-~~~~~~~~L~~L~ 161 (219)
+|+.+++.. .++.+|.. +..+.+|+.+++..+ +...+..+|.++++|+ .+.+.... ..+. ....++++|+.+.
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~l--~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPASV--TAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTTC--CEECTTTTTTCTTEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcccc--eEEchhhhhCCccCCEEE
Confidence 899999988 67777654 678899999999876 6666667899999999 99996322 2221 1233457788888
Q ss_pred ecccCCcceEEE-cCCcccccceee
Q 042636 162 LFDFVAVKSVII-EKGAMPDIRELG 185 (219)
Q Consensus 162 l~~~~~~~~~~~-~~~~~p~L~~L~ 185 (219)
+... .+..+.. ....+++|+.+.
T Consensus 304 l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred eCCC-ccCccchhhhcCCcchhhhc
Confidence 7542 3444432 122356666654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=5.5e-06 Score=60.24 Aligned_cols=112 Identities=10% Similarity=0.098 Sum_probs=68.2
Q ss_pred hHHHHhcccccceeeeeeCC-CCh----hHHHHHHhccCCCCeEEEEecCCCcccc---cccCCCcccCccEEEecc-cC
Q 042636 26 VLKELMKLRQLRKLGIRPKN-GNG----KDVCALIANLENLESLTVLMASKDEILD---LQSLSSPPQYLQRLYLTG-NM 96 (219)
Q Consensus 26 ~~~~l~~l~~L~~L~l~~~~-~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~-~~ 96 (219)
+...+...++|++|+++. + ... ..+...+...++|++|++++|....... ...+...+ +|++|++++ .+
T Consensus 28 l~~~l~~~~~L~~L~L~~-n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNN-IMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTT-CTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecC-CCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcC
Confidence 444566677888888873 3 222 2344556666788888888876543211 12222223 788888876 54
Q ss_pred CC-----CChhhhcCCCccEEEE--eeecCCCCCC----ccccCCCccceeeec
Q 042636 97 KK-----LPDWIFKLKNVIRLGL--DLSGLTEDPL----RVPHALPNLLELRLG 139 (219)
Q Consensus 97 ~~-----l~~~~~~l~~L~~L~l--~~~~~~~~~~----~~l~~l~~L~~L~l~ 139 (219)
.. +...+...++|++|++ ++|.+..... ..+...++|++|+++
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 43 3344556678888888 7777765322 234456788888886
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.60 E-value=6.8e-05 Score=59.31 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=71.1
Q ss_pred cccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCcc
Q 042636 32 KLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVI 110 (219)
Q Consensus 32 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~ 110 (219)
...++..+.+.+ ......+......+++|+.+++..+..... +...+.+.. +|+++.+...++.++ ..+..+.+|+
T Consensus 200 ~~~~~~~l~~~~-~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I-~~~aF~~~~-~L~~l~l~~ni~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 200 QPRDINFLTIEG-KLDNADFKLIRDYMPNLVSLDISKTNATTI-PDFTFAQKK-YLLKIKLPHNLKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CGGGCSEEEEEE-CCCHHHHHHHHHHCTTCCEEECTTBCCCEE-CTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred CccccceEEEee-eecHHHHHHHHHhcCCCeEEECCCCCccee-cHhhhhCCC-CCCEEECCcccceehHHHhhCChhcc
Confidence 356777777773 222223322233478999999987654433 223445555 899999987666654 4467888999
Q ss_pred -EEEEeeecCCCCCCccccCCCccceeeec
Q 042636 111 -RLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 111 -~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+++.. .+...+..+|.++++|+.+.+.
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 999976 6666666788999999999985
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.56 E-value=9.4e-05 Score=60.33 Aligned_cols=126 Identities=10% Similarity=0.083 Sum_probs=71.6
Q ss_pred HhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCC-ChhhhcCCCccEEEEeeecCC-----CCCCcccc
Q 042636 55 IANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKL-PDWIFKLKNVIRLGLDLSGLT-----EDPLRVPH 128 (219)
Q Consensus 55 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l-~~~~~~l~~L~~L~l~~~~~~-----~~~~~~l~ 128 (219)
+.++.+|+.+.+..+ . .......+.. . +|+.+.+...++.+ +..+..+.+|+.+.+.++... ..+..+|.
T Consensus 222 F~~~~~L~~l~l~~~-l-~~I~~~aF~~-~-~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN-V-STIGQEAFRE-S-GITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTCTTCCCEECCTT-C-CEECTTTTTT-C-CCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hhCCCCCCEEecCCC-c-cCcccccccc-C-CccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 456677777777542 1 1222223333 3 78888875555554 345677889999999776554 23345777
Q ss_pred CCCccceeeeccccCCceEE-EccCCCcccceeeecccCCcceEEEc-CCcccccceeeeecC
Q 042636 129 ALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFDFVAVKSVIIE-KGAMPDIRELGIGPF 189 (219)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~p~L~~L~l~~~ 189 (219)
++++|+.+.+.+.. ..+. ....++++|+.+.+... +..+... ...+ +|+.+.+.++
T Consensus 298 ~c~~L~~l~l~~~i--~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPESI--RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCTTC--CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCCce--EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCC
Confidence 88888888885222 1111 11233467777777532 3333211 1234 6777777654
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=1.4e-05 Score=58.14 Aligned_cols=89 Identities=13% Similarity=0.220 Sum_probs=49.9
Q ss_pred hHHHHHHhccCCCCeEEEEec-CCCccc--c-cccCCCcccCccEEEecc-cCCC-----CChhhhcCCCccEEEEeeec
Q 042636 49 KDVCALIANLENLESLTVLMA-SKDEIL--D-LQSLSSPPQYLQRLYLTG-NMKK-----LPDWIFKLKNVIRLGLDLSG 118 (219)
Q Consensus 49 ~~~~~~l~~l~~L~~L~l~~~-~~~~~~--~-~~~~~~~~~~L~~L~l~~-~~~~-----l~~~~~~l~~L~~L~l~~~~ 118 (219)
+.+...+...++|++|++++| ...... . ...+...+ +|++|++++ .+.. +...+...++|++|++++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 344555666677777777766 443211 1 12233333 677777776 4432 22334455677777777777
Q ss_pred CCCCC----CccccCCCccceeee
Q 042636 119 LTEDP----LRVPHALPNLLELRL 138 (219)
Q Consensus 119 ~~~~~----~~~l~~l~~L~~L~l 138 (219)
+.... ...+...++|++|++
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred CCHHHHHHHHHHHHhCCCceEEEe
Confidence 65532 233455667777777
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.37 E-value=0.00019 Score=58.52 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=51.1
Q ss_pred CccEEEecccCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccc-cCCc-eEEEcc---CCCccccee
Q 042636 86 YLQRLYLTGNMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGT-YNYK-LFHFEA---GWFPKLQIL 160 (219)
Q Consensus 86 ~L~~L~l~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~-~~~~~~---~~~~~L~~L 160 (219)
+|+.+.+...++.++.....-.+|+.+.+. +.+......+|.++++|+.+.+..+ .... ...+.. .++++|+.+
T Consensus 227 ~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 227 QLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp TCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred CCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 566666654333333222122567777773 3454444567778888888888622 2101 011222 345677777
Q ss_pred eecccCCcceEEEc-CCcccccceeeee
Q 042636 161 TLFDFVAVKSVIIE-KGAMPDIRELGIG 187 (219)
Q Consensus 161 ~l~~~~~~~~~~~~-~~~~p~L~~L~l~ 187 (219)
.+.+ .+..+... ...+++|+.+.+.
T Consensus 306 ~l~~--~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 306 EIPE--SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred EeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence 7763 24433211 1235677777764
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.12 E-value=0.00017 Score=55.46 Aligned_cols=63 Identities=29% Similarity=0.314 Sum_probs=29.6
Q ss_pred hccCCCCeEEEEecCCCccccccc-CCCcccCccEEEecc-cCCCCChhhhcCC--CccEEEEeeecCC
Q 042636 56 ANLENLESLTVLMASKDEILDLQS-LSSPPQYLQRLYLTG-NMKKLPDWIFKLK--NVIRLGLDLSGLT 120 (219)
Q Consensus 56 ~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~l~~~~~~l~--~L~~L~l~~~~~~ 120 (219)
.++++|+.|++++|.......++. +...+ +|+.|++++ .++.+ ..+..+. +|+.|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAP-NLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHST-TCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCC-CCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 356777777777765544322211 11223 555555554 33332 1222222 5555555555543
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.71 E-value=0.00098 Score=51.18 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=55.0
Q ss_pred hcccccceeeeee-CCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCC-CC-------
Q 042636 31 MKLRQLRKLGIRP-KNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKK-LP------- 100 (219)
Q Consensus 31 ~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-l~------- 100 (219)
.++++|+.|+++. .......+...+..+++|+.|++++|.......+..+... +|++|.+.+ .+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l--~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL--KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS--CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC--CcceEEccCCcCccccCcchhHHH
Confidence 4688999999995 2222234555667899999999999887765445555543 899999987 4432 33
Q ss_pred hhhhcCCCccEEE
Q 042636 101 DWIFKLKNVIRLG 113 (219)
Q Consensus 101 ~~~~~l~~L~~L~ 113 (219)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245566776654
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.62 E-value=0.07 Score=35.98 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 107 KNVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 107 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
.+|+.|+|++|.+...+...+..+++|+.|+|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 63 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLG 63 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEec
Confidence 456666666666666555556666666666664
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.51 E-value=0.049 Score=39.68 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=59.9
Q ss_pred HhcccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc--c-ccCCCcccCccEEEecc-cCCC---
Q 042636 30 LMKLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD--L-QSLSSPPQYLQRLYLTG-NMKK--- 98 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~~~~L~~L~l~~-~~~~--- 98 (219)
+.+-+.|+.|+++..... ...+.+.+..-+.|+.|++++|....... + +.+..-. .|++|+++. .+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~-tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-SLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-SCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCC-ccCeEecCCCcCCHHHH
Confidence 344567888887721011 22455666666788888888776543221 1 1222222 788888876 5443
Q ss_pred --CChhhhcCCCccEEEEeeecC---CCCC----CccccCCCccceeeec
Q 042636 99 --LPDWIFKLKNVIRLGLDLSGL---TEDP----LRVPHALPNLLELRLG 139 (219)
Q Consensus 99 --l~~~~~~l~~L~~L~l~~~~~---~~~~----~~~l~~l~~L~~L~l~ 139 (219)
+-..+..-..|+.|+++++.. .... ...+..-+.|+.|+++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 222334445688888875432 2110 1234445778877775
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.27 E-value=0.095 Score=42.17 Aligned_cols=168 Identities=7% Similarity=-0.032 Sum_probs=81.6
Q ss_pred cccccccccccccccChHhHHHHhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCc
Q 042636 8 LGSLMDLQKLSIIEADSQVLKELMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYL 87 (219)
Q Consensus 8 l~~l~~L~~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 87 (219)
+.++..|+.+.+...............+|+.+.+.. ....-....+.++..|+.+.+..+.. . .....+.... .+
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~-~-i~~~~F~~~~-~l 278 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKL-R-IGGSLFYNCS-GL 278 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTC-E-ECSCTTTTCT-TC
T ss_pred hccccccceeecCCCceEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcc-e-eecccccccc-cc
Confidence 455667777665443111111222345677776652 11000012245677888888765321 1 1112222222 56
Q ss_pred cEEEecc-cCCCCChhhhcCCCccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEE-EccCCCcccceeeeccc
Q 042636 88 QRLYLTG-NMKKLPDWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFDF 165 (219)
Q Consensus 88 ~~L~l~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 165 (219)
+...... .+. ...+..+.+|+.+.+..+ +......++.++.+|+.+.+.+.. ..+. ....++.+|+.+.+...
T Consensus 279 ~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v--~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 279 KKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLV--EEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTC--CEECTTTTTTCTTCCEECCCTT
T ss_pred ceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCcc--cEEhHHhccCCCCCCEEEECcc
Confidence 6655543 221 123456778888888543 444445677788888888874221 1111 11223456777766532
Q ss_pred CCcceEEE-cCCcccccceeeee
Q 042636 166 VAVKSVII-EKGAMPDIRELGIG 187 (219)
Q Consensus 166 ~~~~~~~~-~~~~~p~L~~L~l~ 187 (219)
+..+.. ....+++|+.+.+.
T Consensus 354 --l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 --LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp --CCEECTTTBTTCTTCCEEEEE
T ss_pred --ccEehHHHhhCCCCCCEEEEC
Confidence 333221 11234566666553
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.29 E-value=1.3 Score=35.47 Aligned_cols=105 Identities=10% Similarity=0.042 Sum_probs=60.4
Q ss_pred HHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCc
Q 042636 54 LIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPN 132 (219)
Q Consensus 54 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 132 (219)
++.++.+|+.+.+..... ...-..+.... +|+.+.+...++.++ ..+..+.+|+.+.+..+ +......+|.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~-~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV--SIGTGAFMNCP-ALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCC--EECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccc--eecCccccccc-ccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 356677788877654211 11112233333 788888765555544 34567788888888543 44444467788888
Q ss_pred cceeeeccccCCceEE-EccCCCcccceeeecc
Q 042636 133 LLELRLGGTYNYKLFH-FEAGWFPKLQILTLFD 164 (219)
Q Consensus 133 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 164 (219)
|+.+.+-... ..+. ....++++|+.+.+.+
T Consensus 336 L~~i~ip~sv--~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 336 LERIAIPSSV--TKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEEECTTC--CBCCGGGGTTCTTCCEEEESS
T ss_pred CCEEEECccc--CEEhHhHhhCCCCCCEEEECC
Confidence 8888884221 1111 1233456777777764
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.46 E-value=0.33 Score=38.93 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=66.2
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCC
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKN 108 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~ 108 (219)
+.++.+|+.+.+.. ....-...++.++.+|+.+.+.. .. ....-..+.+.. +|+.+.+...++.+. ..+..+.+
T Consensus 261 F~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~-~i-~~I~~~aF~~c~-~L~~i~lp~~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS-RI-TELPESVFAGCI-SLKSIDIPEGITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TC-CEECTTTTTTCT-TCCEEECCTTCCEECTTTTTTCTT
T ss_pred eeecccccEEeccc--ccceecCcccccccccccccCCC-cc-cccCceeecCCC-CcCEEEeCCcccEehHhHhhCCCC
Confidence 55677888877753 11111112356778888888753 22 222223333334 899998876555543 45678899
Q ss_pred ccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
|+.+.+.. .+......+|.++++|+.+.+.
T Consensus 336 L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 336 LERIAIPS-SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEEECT-TCCBCCGGGGTTCTTCCEEEES
T ss_pred CCEEEECc-ccCEEhHhHhhCCCCCCEEEEC
Confidence 99999954 3555556788999999999986
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.46 E-value=0.88 Score=36.43 Aligned_cols=125 Identities=11% Similarity=0.034 Sum_probs=71.9
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecccCCCCC-hhhhcCCC
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTGNMKKLP-DWIFKLKN 108 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~l~-~~~~~l~~ 108 (219)
+..+.+++.+.+.. ....-....+.++..++........ .+-..+.... +|+.+.+...++.++ ..+..+.+
T Consensus 249 f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~-~L~~i~l~~~i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 249 FYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCS-SLTEVKLLDSVKFIGEEAFESCTS 321 (394)
T ss_dssp TTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTCT-TCCEEEECTTCCEECTTTTTTCTT
T ss_pred ccccccceeEEcCC--CcceeeccccccccccceeccCcee----eccccccccc-cccccccccccceechhhhcCCCC
Confidence 45567777777763 1111111224566777777664321 1112233333 888888876555543 34677899
Q ss_pred ccEEEEeeecCCCCCCccccCCCccceeeeccccCCceEE-EccCCCcccceeeecc
Q 042636 109 VIRLGLDLSGLTEDPLRVPHALPNLLELRLGGTYNYKLFH-FEAGWFPKLQILTLFD 164 (219)
Q Consensus 109 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 164 (219)
|+.+++.. .+......+|.++.+|+.+.+.... ..+. ....++++|+.+.+..
T Consensus 322 L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 322 LVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLSL--RKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECCCT-TCCEECTTTTTTCTTCCEECCCTTC--CEECTTTBTTCTTCCEEEEEG
T ss_pred CCEEEeCC-cccEEhHHhccCCCCCCEEEECccc--cEehHHHhhCCCCCCEEEECC
Confidence 99999853 3555455678899999999885222 1121 1123456777777753
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.20 E-value=2.4 Score=33.51 Aligned_cols=53 Identities=21% Similarity=0.174 Sum_probs=26.9
Q ss_pred CccEEEecccCCCCC-hhhhcCCCccEEEEeeecCCCCCCccccCCCccceeee
Q 042636 86 YLQRLYLTGNMKKLP-DWIFKLKNVIRLGLDLSGLTEDPLRVPHALPNLLELRL 138 (219)
Q Consensus 86 ~L~~L~l~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 138 (219)
+++.+.+...+..++ ..+..+.+|+.+.+..+.+......++.++.+|+.+.+
T Consensus 264 ~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 264 ALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp TCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 455555543333322 22345566666666554444433445556666666665
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.66 E-value=1.4 Score=29.35 Aligned_cols=39 Identities=26% Similarity=0.204 Sum_probs=30.7
Q ss_pred cccCccEEEecc-cCCCCChh-hhcCCCccEEEEeeecCCC
Q 042636 83 PPQYLQRLYLTG-NMKKLPDW-IFKLKNVIRLGLDLSGLTE 121 (219)
Q Consensus 83 ~~~~L~~L~l~~-~~~~l~~~-~~~l~~L~~L~l~~~~~~~ 121 (219)
.+.++++|++++ .++.+|.. +..+++|+.|+|++|.+.-
T Consensus 29 lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 344899999998 78887754 5678899999999887653
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.44 E-value=1.4 Score=34.83 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=63.4
Q ss_pred HhcccccceeeeeeCCCChhHHHHHHhccCCCCeEEEEecCCCcccccccCCCcccCccEEEecc-cCCCCC-hhhhcCC
Q 042636 30 LMKLRQLRKLGIRPKNGNGKDVCALIANLENLESLTVLMASKDEILDLQSLSSPPQYLQRLYLTG-NMKKLP-DWIFKLK 107 (219)
Q Consensus 30 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~l~-~~~~~l~ 107 (219)
+.++.+|+.+.+.. ....--..++.++.+|+.+.+... . .......+.... +|+.+.+.. .++.++ ..+..+.
T Consensus 236 f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~-i-~~i~~~aF~~c~-~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK-V-KTVPYLLCSGCS-NLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC-C-SEECTTTTTTCT-TCCEEEECCTTCCEECTTTTTTCT
T ss_pred ccCCccceEEEcCC--CccEeCccccceeehhcccccccc-c-eecccccccccc-ccccccccccccceehhhhhcCCC
Confidence 44566677776652 110001123466777888887542 1 222222333344 899999975 566554 4567889
Q ss_pred CccEEEEeeecCCCCCCccccCCCccceeeec
Q 042636 108 NVIRLGLDLSGLTEDPLRVPHALPNLLELRLG 139 (219)
Q Consensus 108 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 139 (219)
+|+.+.+..+ +......+|.++.+|+.+.+-
T Consensus 311 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 9999999543 544445678889999988874
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=65.66 E-value=1.9 Score=31.16 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=69.0
Q ss_pred cccccccccccc---Ch----HhHHHHhcccccceeeeeeCCCC----hhHHHHHHhccCCCCeEEEEecCCCcccc---
Q 042636 11 LMDLQKLSIIEA---DS----QVLKELMKLRQLRKLGIRPKNGN----GKDVCALIANLENLESLTVLMASKDEILD--- 76 (219)
Q Consensus 11 l~~L~~L~~~~~---~~----~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--- 76 (219)
-+.|++|++.++ .. .+.+.+..-+.|+.|+++. +.. ...+.+.+..-+.|++|++++|.......
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 357888888763 33 3555667778899999985 222 23455666666889999999987754321
Q ss_pred cccCCCcccCccEEEeccc-C---CC-----CChhhhcCCCccEEEEeeecC
Q 042636 77 LQSLSSPPQYLQRLYLTGN-M---KK-----LPDWIFKLKNVIRLGLDLSGL 119 (219)
Q Consensus 77 ~~~~~~~~~~L~~L~l~~~-~---~~-----l~~~~~~l~~L~~L~l~~~~~ 119 (219)
.+.+..-. .|++|+++.. . .. +...+..-+.|+.|+++.+.+
T Consensus 119 a~aL~~N~-tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQ-SIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTC-CCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCC-ceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23444444 7999999742 1 11 222344557899999976643
Done!