Query 042638
Match_columns 92
No_of_seqs 82 out of 84
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 14:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yvb_I Cystatin; cysteine prot 99.8 1E-20 3.4E-25 124.7 6.6 83 3-86 3-107 (111)
2 1cyu_A Cystatin A, stefin A; p 99.8 1.1E-21 3.8E-26 129.0 2.0 83 3-91 3-89 (98)
3 1roa_A Cystatin D; inhibitor o 99.8 9.6E-20 3.3E-24 122.7 5.5 83 3-86 11-116 (122)
4 3ima_B Cysteine proteinase inh 99.8 2E-19 6.9E-24 117.4 6.0 84 3-89 3-90 (91)
5 3gax_A Cystatin-C; cysteine pr 99.8 1.6E-19 5.4E-24 121.8 5.2 83 3-86 10-114 (120)
6 2ch9_A Cystatin F; inhibitor, 99.8 3E-19 1E-23 123.1 5.7 87 2-89 16-125 (131)
7 3mwz_A Sialostatin L2; antipar 99.7 1.3E-18 4.4E-23 116.4 5.8 83 3-86 6-109 (115)
8 3l0r_A Cystatin-2, OMC2; SOFT 99.7 1.4E-18 4.6E-23 117.8 4.6 82 3-87 4-106 (115)
9 1eqk_A Oryzacystatin-I; alpha 99.7 4.3E-18 1.5E-22 112.4 5.9 84 3-89 9-95 (102)
10 2w9q_A Multicystatin; protease 99.7 9.1E-18 3.1E-22 107.8 5.9 82 5-89 1-86 (87)
11 3ul5_A Canecystatin-1; defense 99.7 8.9E-18 3.1E-22 119.6 5.9 85 3-90 46-136 (139)
12 2l4v_A Cystatin; protease inhi 99.7 2E-17 7E-22 116.2 7.0 85 3-90 43-132 (135)
13 2kxg_A Aspartic protease inhib 99.7 1.3E-16 4.3E-21 106.8 5.7 79 3-89 6-93 (95)
14 2oct_A Cystatin B; stefin, amy 99.6 5.9E-16 2E-20 103.1 4.7 81 3-89 3-87 (98)
15 2o9u_X Monellin chain B and mo 99.3 1.7E-12 5.8E-17 88.2 6.3 78 3-89 1-92 (97)
16 1kwi_A Protegrin-3 precursor; 94.5 0.022 7.6E-07 38.6 2.6 37 14-50 3-39 (101)
17 2bo9_B Human latexin, MUM; met 92.3 0.084 2.9E-06 40.2 2.9 61 8-68 2-64 (222)
18 4gpa_A Glutamate receptor 4; P 76.5 2.2 7.4E-05 30.3 3.3 31 10-40 13-44 (389)
19 2rsx_A Uncharacterized protein 73.3 2.7 9.2E-05 30.2 3.1 50 39-88 104-156 (159)
20 3ltm_A Alpha-REP4; protein eng 51.3 6.9 0.00024 25.7 1.7 25 12-36 186-210 (211)
21 2cpn_A TAR RNA-binding protein 43.1 14 0.00047 23.2 2.1 16 17-32 73-88 (89)
22 1d9c_A Interferon-gamma; helic 41.7 12 0.00039 26.0 1.6 17 7-23 96-112 (121)
23 2rig_A Interferon-gamma; cytok 40.7 21 0.00073 25.3 2.9 26 7-32 96-122 (144)
24 3ub1_A ORF13-like protein; NTF 32.8 57 0.0019 24.5 4.4 24 68-91 227-250 (261)
25 2p58_B Putative type III secre 30.8 8.5 0.00029 24.9 -0.4 22 9-30 42-63 (86)
26 1ny9_A Transcriptional activat 29.5 27 0.00092 23.0 1.9 22 8-29 71-92 (143)
27 2pzd_A Serine protease HTRA2; 29.2 30 0.001 21.2 2.0 30 57-86 82-112 (113)
28 3rpj_A Curlin genes transcript 27.9 58 0.002 22.9 3.5 28 3-30 82-109 (134)
29 3o21_A Glutamate receptor 3; p 27.9 51 0.0017 24.1 3.3 23 10-32 13-35 (389)
30 3cnk_A Filamin-A; FLNA24, X-RA 26.0 76 0.0026 18.9 3.4 23 65-87 38-61 (89)
31 1fyh_A Interferon-gamma; cytok 25.4 73 0.0025 24.6 3.9 26 8-33 98-123 (258)
32 3k7c_A Putative NTF2-like tran 25.2 96 0.0033 20.8 4.1 73 9-85 34-112 (114)
33 2d9d_A BAG family molecular ch 20.3 73 0.0025 21.0 2.6 19 11-29 56-74 (89)
No 1
>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A
Probab=99.82 E-value=1e-20 Score=124.69 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=74.8
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc----------------
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE---------------- 66 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~---------------- 66 (92)
.|||++++++||+||+||++||..||++||+.|+|++.+|++|++|||+| .+|.|.+++++++
T Consensus 3 ~Gg~~~~~~~d~~v~~~~~~av~~~N~~s~~~~~~~l~~v~~a~~QvVaG-~~y~l~v~v~~t~C~k~~~~~~~C~~~~~ 81 (111)
T 1yvb_I 3 LGAPVPVDENDEGLQRALQFAMAEYNRASNDKYSSRVVRVISAKRQLVSG-IKYILQVEIGRTTCPKSSGDLQSCEFHDE 81 (111)
T ss_dssp TTCEECCCTTCHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCCEEEESSS-EEEEEEEEEEEBSSCSSSSCSSCCCBCSS
T ss_pred CCCceECCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEEEEEEEEEEECC-eEEEEEEEEEccccCCCCCCcccCCCCCC
Confidence 59999999999999999999999999999999999999999999999999 9999999999996
Q ss_pred ----ceeeeeeEEEec--CCeeeeec
Q 042638 67 ----KEEKLNVEVHKK--EGTFHLNQ 86 (92)
Q Consensus 67 ----k~e~~~vev~~~--~g~~~l~~ 86 (92)
+....+++|.-. .+.+.|..
T Consensus 82 ~~~~~~~~C~~~V~~~pW~~~~~l~~ 107 (111)
T 1yvb_I 82 PEMAKYTTCTFVVYSIPWLNQIKLLE 107 (111)
T ss_dssp TTTSCCEEEEEEEEEEGGGTEEEEEE
T ss_pred cccccccEEEEEEEecCCCCccEeec
Confidence 445678888766 77776653
No 2
>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A
Probab=99.82 E-value=1.1e-21 Score=128.97 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=75.2
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec----
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK---- 78 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~---- 78 (92)
.|||++++++||+||++|++|+.++|++||+.| ++.+|++|++|||+| .+|.|.+++.++. ..+++|+++
T Consensus 3 ~GG~~~~~~~d~ev~~~a~~av~~~n~~~n~~~--~~~~vv~a~~QVVaG-~nY~l~v~~~~~~---c~~~~V~~~l~~~ 76 (98)
T 1cyu_A 3 PGGLSEAKPATPEIQEIVDKVKPQLEEKTNETY--GKLEAVQYKTQVVAG-TNYYIKVRAGDNK---YLHLKVFKSLPGQ 76 (98)
T ss_dssp CSSCSSEEESCTTHHHHHHHTCTTTTTSSCCSS--SCEEEEEEEEECSSS-CEEEEEEEECSSC---BCEEEEECCCSSS
T ss_pred CcccccCCCCCHHHHHHHHHHHHHHHhhcCCCc--ceEEEEEEEEEEecc-eEEEEEEEEcCCc---EEEEEEecCCCCC
Confidence 599999999999999999999999999999976 999999999999999 7888888887765 689999987
Q ss_pred CCeeeeecccccc
Q 042638 79 EGTFHLNQMQQDQ 91 (92)
Q Consensus 79 ~g~~~l~~~~~~~ 91 (92)
+|.|.|++++++.
T Consensus 77 ~~~~~l~~~q~~k 89 (98)
T 1cyu_A 77 NEDLVLTGYQVDK 89 (98)
T ss_dssp CCCCEEEEEECCS
T ss_pred CCCeEEEEEecCC
Confidence 6899999998753
No 3
>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A
Probab=99.79 E-value=9.6e-20 Score=122.70 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=74.5
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhh-cCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc---------------
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQR-SNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE--------------- 66 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~-SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~--------------- 66 (92)
.|||++++++||+||++|++||.+||++ ||+.|+|++.+|++|++|||+| .+|.|.+++.+++
T Consensus 11 ~Gg~~~~~~~d~~v~~~a~~Av~~~N~~~s~~~~~~~l~~v~~a~~QVVaG-~~Y~l~v~v~~t~C~k~~~~~~~C~~~~ 89 (122)
T 1roa_A 11 AGGIHATDLNDKSVQRALDFAISEYNKVINKDEYYSRPLQVMAAYQQIVGG-VNYYFNVKFGRTTCTKSQPNLDNCPFND 89 (122)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEEEETTE-EEEEEEEEEEEEEEETTSSCCSSCCBCC
T ss_pred CCCCeECCCCCHHHHHHHHHHHHHHHhcccCCCceeEEEEEEEEEEEEECC-eEEEEEEEEEccccCCCCCCcccCCCCC
Confidence 4899999999999999999999999999 9999999999999999999999 9999999999986
Q ss_pred -----ceeeeeeEEEec--CCeeeeec
Q 042638 67 -----KEEKLNVEVHKK--EGTFHLNQ 86 (92)
Q Consensus 67 -----k~e~~~vev~~~--~g~~~l~~ 86 (92)
+....+++|.-. .+.+.|..
T Consensus 90 ~~~~~~~~~C~~~V~~~PW~~~~~l~~ 116 (122)
T 1roa_A 90 QPKLKEEEFCSFQINEVPWEDKISILN 116 (122)
T ss_dssp STTCCCCEEEEEEEEEETTTTEEEEEE
T ss_pred CcccccceEEEEEEEecccCCccEECc
Confidence 345678888766 77777754
No 4
>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0
Probab=99.78 E-value=2e-19 Score=117.44 Aligned_cols=84 Identities=19% Similarity=0.336 Sum_probs=72.4
Q ss_pred CCCcccc--CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec--
Q 042638 3 CPGWQAV--PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK-- 78 (92)
Q Consensus 3 ~gG~~~v--~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~-- 78 (92)
.|||+++ +++||+||++|+|||.+||++||+.|.| .+|++|++|||+| .+|.|.+++.+|++...+.++|.-.
T Consensus 3 ~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~n~~~~~--~~Vv~a~~QVVaG-~nY~l~v~~~~~~~~~~y~a~V~~~pW 79 (91)
T 3ima_B 3 MGGIVDVEGAQNSAEVEELARFAVDEHNKKENALLQF--SRLVKAKQQVVSG-IMHHLTVEVIEGGKKKVYEAKVWVQAW 79 (91)
T ss_dssp BTCEEC------CHHHHHHHHHHHHHHHHHHTCCCEE--EEEEEEEEEESSS-EEEEEEEEEEETTEEEEEEEEEEEEGG
T ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHHHhcCCceEE--EEEEEEEEEEecc-EEEEEEEEEecCCceEEEEEEEEEeeC
Confidence 5999999 7999999999999999999999997655 9999999999999 9999999999999999999999765
Q ss_pred CCeeeeecccc
Q 042638 79 EGTFHLNQMQQ 89 (92)
Q Consensus 79 ~g~~~l~~~~~ 89 (92)
.+.+.|....|
T Consensus 80 ~~~~~l~~F~~ 90 (91)
T 3ima_B 80 LNSKKLHEFSP 90 (91)
T ss_dssp GTEEEEEEEEC
T ss_pred CCcEEEEEEEe
Confidence 78888776554
No 5
>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A
Probab=99.78 E-value=1.6e-19 Score=121.84 Aligned_cols=83 Identities=16% Similarity=0.295 Sum_probs=71.5
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccc-----------------
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG----------------- 65 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg----------------- 65 (92)
.|||++++++||+||+||++||.+||++||+.|+|++.+|++|++|||+| .+|.|.++|.|.
T Consensus 10 ~Gg~~~~~~~d~~v~~~a~~av~~~N~~sn~~~~~~~~~v~~a~~QvVaG-~~Y~l~v~v~~t~C~K~~~~~~~C~~~~~ 88 (120)
T 3gax_A 10 VGGPMDASVEEEGVRRALDFAVGEYNKASNDMYHSRACQVVRARKQIVAG-VNYFLDVELCRTTCTKTQPNLDNCPFHDQ 88 (120)
T ss_dssp --CCEEECTTSHHHHHHHHHHHHHHHHHCCCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEESCC--CCCCCBCSS
T ss_pred CCCCEeCCCCCHHHHHHHHHHHHHHHhccCCcceeeEEEEEEEEEEEecC-eEEEEEEEEEeeeccCCCCCcccCCCcCC
Confidence 48999999999999999999999999999999999999999999999999 999999999985
Q ss_pred ---cceeeeeeEEEec--CCeeeeec
Q 042638 66 ---EKEEKLNVEVHKK--EGTFHLNQ 86 (92)
Q Consensus 66 ---~k~e~~~vev~~~--~g~~~l~~ 86 (92)
.+.-...++|.-. .+.|.|..
T Consensus 89 ~~~~~~~~C~~~V~~~PW~~~~~l~~ 114 (120)
T 3gax_A 89 PHLKRKAFCSFQIYAVPWQGTMTLSK 114 (120)
T ss_dssp HHHHCCEEEEEEEEEETTTTEEEEEE
T ss_pred ccccCceEEEEEEEecCCCCeEEecc
Confidence 2344566777655 77777654
No 6
>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}
Probab=99.77 E-value=3e-19 Score=123.13 Aligned_cols=87 Identities=17% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecccc---------------
Q 042638 2 HCPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGE--------------- 66 (92)
Q Consensus 2 ~~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~--------------- 66 (92)
..|||++++++||+||+||++||.+||++||+.|+|++.+|++|++|||+| .+|.|.++++++.
T Consensus 16 ~~Gg~~~~~~~d~ev~e~a~~Av~~~N~~sn~~~~~~l~~V~~a~~QVVaG-~~Y~l~v~v~~t~C~K~~~~~~~~C~~~ 94 (131)
T 2ch9_A 16 KPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKG-LKYMLEVEIGRTTCKKNQHLRLDDCDFQ 94 (131)
T ss_dssp CCCCCEECCTTCHHHHHHHHHHHHHHHHHSCCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEETTSCCCGGGCCBC
T ss_pred CCCCCeeCCCCCHHHHHHHHHHHHHHHHhCCCCcceEEEEEEEeeeEecCC-eEEEEEEEEEcccccCCCCCccccCCcc
Confidence 369999999999999999999999999999999999999999999999999 9999999999852
Q ss_pred -----c-eeeeeeEEEec--CCeeeeecccc
Q 042638 67 -----K-EEKLNVEVHKK--EGTFHLNQMQQ 89 (92)
Q Consensus 67 -----k-~e~~~vev~~~--~g~~~l~~~~~ 89 (92)
+ ....+++|--. ++.+.|....-
T Consensus 95 ~~~~~~~~~~C~~~V~~~PW~~~~~l~~f~~ 125 (131)
T 2ch9_A 95 TNHTLKQTLSCYSEVWVVPWLQHFEVPVLRC 125 (131)
T ss_dssp CSTTTCCEEEEEEEEEEEGGGTEEEEEEEEE
T ss_pred cCcccccccEEEEEEEEecCCCeeEEEEEec
Confidence 1 12577777665 77777775543
No 7
>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A
Probab=99.75 E-value=1.3e-18 Score=116.37 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCccccCC-CChHHHHHHHHHHHHHhhhcC-CCCcchhhhhhhhhhhhhhhhheeeeeeEecc----------------
Q 042638 3 CPGWQAVPV-HDPQVQDAANHAIQTIQQRSN-SLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR---------------- 64 (92)
Q Consensus 3 ~gG~~~v~~-~DP~Vq~AA~~AVk~~n~~SN-sl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr---------------- 64 (92)
.|||+++++ +||+||++|++||..||+.|| +.|+|++.+|++|++|||+| .+|.|.+++.|
T Consensus 6 ~Gg~~~~~~~~~~~v~~~~~~av~~~N~~sn~~~~~~~~~~V~~a~~QvVaG-~~Y~l~v~v~~t~C~K~~~~~~~~C~~ 84 (115)
T 3mwz_A 6 RGGYRERSNQDDPEYLEMAHYATSTWSAQQPGKTHFDTVVEVMKVETQTVAG-TNYRLTLKVAESTCELTSTYNKDTCQA 84 (115)
T ss_dssp SSCCEEECTTSCTHHHHHHHHHHHHHHHTSTTCCEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEETTSCCCTTTCCC
T ss_pred CCcceECCCCCCHHHHHHHHHHHHHHHhhcCCcccceeeeeeeEEEeeccCC-EEEEEEEEEEeccccCCCcCCcccCCC
Confidence 599999999 999999999999999999999 89999999999999999999 89999999965
Q ss_pred --ccceeeeeeEEEec-CCeeeeec
Q 042638 65 --GEKEEKLNVEVHKK-EGTFHLNQ 86 (92)
Q Consensus 65 --g~k~e~~~vev~~~-~g~~~l~~ 86 (92)
|.+.-...++|.-. .+.+.|..
T Consensus 85 ~~~~~~~~C~~~V~~~P~~~~~l~~ 109 (115)
T 3mwz_A 85 NANAAQRTCTTVIYRNMQGEKSINS 109 (115)
T ss_dssp CTTSCEEEEEEEEEECTTSCEEEEE
T ss_pred CCCCCeeEEEEEEEECCCCEEEEcc
Confidence 34455666777655 56665543
No 8
>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}
Probab=99.74 E-value=1.4e-18 Score=117.81 Aligned_cols=82 Identities=9% Similarity=0.196 Sum_probs=72.1
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccc-----------------
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRG----------------- 65 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg----------------- 65 (92)
.|||++++++||+||++|++||. |+.||+.|+|++.+|++|++|||+| .+|.|.+++.|.
T Consensus 4 ~GG~~~i~~~d~~v~~~a~~Av~--N~~s~~~~~~~~~kV~~a~~QVVaG-~~Y~i~v~v~~t~C~K~~~~~~~~~C~~~ 80 (115)
T 3l0r_A 4 PGGWTRQDPTEARFLELAHFATS--SQTEGREFYDTVVTVKEVETQVVAG-MNYKLTIEISPSVCKIGEVQYSAEQCVPK 80 (115)
T ss_dssp CCSCEEECTTCHHHHHHHHHHHT--TCCTTCSEEEEEEEEEEEEEEESSS-EEEEEEEEEEEEEEEBTTBCCCTTTCCBS
T ss_pred cccceeCCCCCHHHHHHHHHHHh--ccccCCCcceEEEEEEEEEEEEEee-EEEEEEEEEecccccccccccccccCccc
Confidence 59999999999999999999999 9999999999999999999999999 999999999874
Q ss_pred --cceeeeeeEEEec--CCeeeeecc
Q 042638 66 --EKEEKLNVEVHKK--EGTFHLNQM 87 (92)
Q Consensus 66 --~k~e~~~vev~~~--~g~~~l~~~ 87 (92)
.+-....++|.-. .+.+.|...
T Consensus 81 ~~~~~~~C~~~V~~~PW~~~~~l~~~ 106 (115)
T 3l0r_A 81 DAQQKSTCVAVIYHVPWQNQKSVTSY 106 (115)
T ss_dssp CTTSCEEEEEEEEEEGGGTEEEEEEE
T ss_pred CCCceeEEEEEEEEecCCCeeEEEEE
Confidence 2445677777655 777777654
No 9
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Probab=99.73 E-value=4.3e-18 Score=112.44 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCCccccC-CCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec--C
Q 042638 3 CPGWQAVP-VHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK--E 79 (92)
Q Consensus 3 ~gG~~~v~-~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~--~ 79 (92)
.|||++++ ++||+||++|++||..||++||+.| ++.+|++|++|||+| .+|.|.+++.+|.+-..+.++|--. .
T Consensus 9 ~GG~~~~~~~~~~~v~~~a~~Av~~~n~~~n~~~--~~~~Vv~a~~QVVaG-~~Y~l~v~~~~~~~~~~c~~~V~~~PW~ 85 (102)
T 1eqk_A 9 LGGVEPVGNENDLHLVDLARFAVTEHNKKANSLL--EFEKLVSVKQQVVAG-TLYYFTIEVKEGDAKKLYEAKVWEKPWM 85 (102)
T ss_dssp SSSSEEECCTTCHHHHHHHHHHHHHHHHHTTCCE--EEEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEEEEEEEBTTT
T ss_pred CcccccCCCCCCHHHHHHHHHHHHHHHhhcCCce--EEEEEEEEEEEEecc-EEEEEEEEEecCCCcEEEEEEEEEeeCC
Confidence 58999986 9999999999999999999999975 568999999999999 9999999999999989999999876 7
Q ss_pred Ceeeeecccc
Q 042638 80 GTFHLNQMQQ 89 (92)
Q Consensus 80 g~~~l~~~~~ 89 (92)
+.+.|....+
T Consensus 86 ~~~~l~~f~c 95 (102)
T 1eqk_A 86 DFKELQEFKP 95 (102)
T ss_dssp TBCCEEEEEC
T ss_pred CceEEEEEEc
Confidence 7777776544
No 10
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A
Probab=99.71 E-value=9.1e-18 Score=107.78 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=72.9
Q ss_pred Ccccc-CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecc-ccceeeeeeEEEec--CC
Q 042638 5 GWQAV-PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR-GEKEEKLNVEVHKK--EG 80 (92)
Q Consensus 5 G~~~v-~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr-g~k~e~~~vev~~~--~g 80 (92)
||.++ +++||+||++|++||..||++||+ .|++.+|++|++|||+| .+|.|.+++.. |.+...+.++|.-. .+
T Consensus 1 G~~~~~~~~d~~v~~~~~fAv~~~n~~~n~--~~~~~~vv~a~~QVVaG-~~Y~l~v~~~~~~~~~~~c~~~V~~~PW~~ 77 (87)
T 2w9q_A 1 GIVNVPNPNNTKFQELARFAIQDYNKKQNA--HLEFVENLNVKEQVVAG-IMYYITLAATDDAGKKKIYKAKIWVKEWED 77 (87)
T ss_dssp CCEECSSTTSHHHHHHHHHHHHHHHHHHTC--CEEEEEEEEEEEEESSS-EEEEEEEEEEETTTEEEEEEEEEEEEGGGT
T ss_pred CcccCCCCCCHHHHHHHHHHHHHHHhhcCC--ceEEEEEEEEEEEEecc-EEEEEEEEEecCCCCeEEEEEEEEEeeCCC
Confidence 79998 499999999999999999999998 89999999999999999 99999999988 45667799999876 88
Q ss_pred eeeeecccc
Q 042638 81 TFHLNQMQQ 89 (92)
Q Consensus 81 ~~~l~~~~~ 89 (92)
.+.|....|
T Consensus 78 ~~~l~~f~~ 86 (87)
T 2w9q_A 78 FKKVVEFKL 86 (87)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEeecc
Confidence 888776544
No 11
>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*
Probab=99.71 E-value=8.9e-18 Score=119.57 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCcccc---CCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEecc-ccceeeeeeEEEec
Q 042638 3 CPGWQAV---PVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKR-GEKEEKLNVEVHKK 78 (92)
Q Consensus 3 ~gG~~~v---~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkr-g~k~e~~~vev~~~ 78 (92)
.|||+++ +++||+||++|+|||.+||+++|+. |++.+|++|++|||+| .+|.|.++++. |++...|.+.|--.
T Consensus 46 ~GG~~~i~~~~~ndpeVqela~fAV~e~Nkksn~~--l~~~kVv~a~sQVVAG-~nY~L~V~a~d~~g~~~~y~a~Vwek 122 (139)
T 3ul5_A 46 VGDVRDAPAGHENDLEAIELARFAVAEHNSKTNAM--LEFERLVKVRHQVVAG-TMHHFTVQVKEAGGGKKLYEAKVWEK 122 (139)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEEEEEEEEEE-EEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CCCcccccCCCCCCHHHHHHHHHHHHHHHHhCCCc--eeEEEEEEEEEEEecC-EEEEEEEEEecCCCCeEEEEEEEEEe
Confidence 5899999 7999999999999999999999997 6889999999999999 99999999999 88999999999866
Q ss_pred --CCeeeeeccccc
Q 042638 79 --EGTFHLNQMQQD 90 (92)
Q Consensus 79 --~g~~~l~~~~~~ 90 (92)
++...|....|-
T Consensus 123 PW~n~k~L~sF~p~ 136 (139)
T 3ul5_A 123 VWENFKQLQSFQPV 136 (139)
T ss_dssp TTTTEEEEEEEEEC
T ss_pred eCCCceEEEEEEEc
Confidence 888888877664
No 12
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}
Probab=99.70 E-value=2e-17 Score=116.18 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=78.2
Q ss_pred CCCccccC---CCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec-
Q 042638 3 CPGWQAVP---VHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK- 78 (92)
Q Consensus 3 ~gG~~~v~---~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~- 78 (92)
.|||++++ ++||+||++|+|||..||++||+.|.| .+|++|++|||+| .+|.|.+++.+|.+-..+.++|--.
T Consensus 43 ~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~sn~~~~f--~kVv~a~~QVVAG-~nY~l~vev~~~~~~~~c~a~Vw~kP 119 (135)
T 2l4v_A 43 MGGIYDAPLNNENGFDKEDLARFAVREYNNKNNALLEF--VRVVKAKEQVVSG-MMHYLTVEVNDAGKKKLYEAKVWEQV 119 (135)
T ss_dssp CCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHTSCCCEE--EEEEEEEEECSSS-EEEEEEEEEEETTEEEEEEEEEEECS
T ss_pred CCccCcCCCCCCCCHHHHHHHHHHHHHHHhhcCCceEE--EEEEEEEEEEecC-EEEEEEEEEecCCceEEEEEEEEEec
Confidence 58999999 999999999999999999999998766 8999999999999 9999999999999999999999876
Q ss_pred -CCeeeeeccccc
Q 042638 79 -EGTFHLNQMQQD 90 (92)
Q Consensus 79 -~g~~~l~~~~~~ 90 (92)
.+.+.|....|-
T Consensus 120 W~n~~~L~~f~~~ 132 (135)
T 2l4v_A 120 WMNFRQLQEFTYL 132 (135)
T ss_dssp SSCCEEEEEEEEC
T ss_pred CCCceEEEEEEec
Confidence 888888877664
No 13
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=99.65 E-value=1.3e-16 Score=106.80 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=70.8
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhh-----eeeeeeEeccc--cceeeeeeEE
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFA-----KFAMLLKVKRG--EKEEKLNVEV 75 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~-----K~~l~lklkrg--~k~e~~~vev 75 (92)
.|||++++++||+||++|+|||.+||++ .+++.+|++| |||+| . +|.|+|+++++ .+-..|.++|
T Consensus 6 ~Gg~~~i~~nd~~v~e~a~fAv~e~N~~-----~l~~~~Vv~a--QVVaG-~~~~~~~Y~L~l~~~~~~~~~~~~y~a~V 77 (95)
T 2kxg_A 6 IGEVIGISVNDPRVKEIAEFALKQHAEQ-----NLILAGVDAG--QIIKG-IPHWDNYYNLILSAKHSPHEFSKFYNVVV 77 (95)
T ss_dssp SCCCCCCCTTCHHHHHHHHHHHHHCCTT-----CCEEEEEEEE--EEECS-SCSSCCEEEEEEEEESCTTSCCEEEEEEE
T ss_pred CCcceECCCCCHHHHHHHHHHHHHHHhh-----CcEEEEEEEE--eEecC-ccccCccEEEEEEEecCCCCCceEEEEEE
Confidence 5899999999999999999999999998 5888999999 99999 8 99999999999 6677799999
Q ss_pred Eec--CCeeeeecccc
Q 042638 76 HKK--EGTFHLNQMQQ 89 (92)
Q Consensus 76 ~~~--~g~~~l~~~~~ 89 (92)
--. ++.+.|....|
T Consensus 78 w~kpW~n~~~L~sF~~ 93 (95)
T 2kxg_A 78 LEKASDNSLKLVAFVP 93 (95)
T ss_dssp EEETTTTEEEEEEEEE
T ss_pred EEccCCCcEEEEEeEe
Confidence 876 78888876554
No 14
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=99.60 E-value=5.9e-16 Score=103.13 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=69.9
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhhhhhheeeeeeEeccccceeeeeeEEEec----
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVIEDFAKFAMLLKVKRGEKEEKLNVEVHKK---- 78 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV~g~~K~~l~lklkrg~k~e~~~vev~~~---- 78 (92)
.|||.++++.||+||++|++|+.++|+++|+. |++.+|+++++|||+| .+|.+.+++.+|. -..+.|.+.
T Consensus 3 ~GG~~~~~~~~~evq~i~~~a~~~~n~~~~~~--~~~~~vv~~~tQVVAG-~NY~ikv~v~~~~---~~h~~vy~~lp~~ 76 (98)
T 2oct_A 3 SGAPSATQPATAETQHIADQVRSQLEEKYNKK--FPVFKAVSFKSQVVAG-TNYFIKVHVGDED---FVHLRVFQSLPHE 76 (98)
T ss_dssp CSSCCCCEECCHHHHHHHHHHHHHHHHHHTSC--CSCCEEEEEEEEEEEE-EEEEEEEECSTTC---EEEEEEEEESSTT
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHhhcCCc--cceeEEEEEEEEEeCC-EEEEEEEEECCCc---EEEEEEEecCCCC
Confidence 59999999999999999999999999999998 5788999999999999 7787777776654 467788876
Q ss_pred CCeeeeecccc
Q 042638 79 EGTFHLNQMQQ 89 (92)
Q Consensus 79 ~g~~~l~~~~~ 89 (92)
++.+.|...+.
T Consensus 77 ~~~~~l~~~q~ 87 (98)
T 2oct_A 77 NKSLTLSNYQT 87 (98)
T ss_dssp CCCEEEEEEEE
T ss_pred CCceEEEEEec
Confidence 57888888765
No 15
>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*
Probab=99.34 E-value=1.7e-12 Score=88.22 Aligned_cols=78 Identities=9% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhhc-CCCCcchhhhhhhh-----------hhhhhhhhheeeeeeEeccccceee
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQRS-NSLFPYVLQEIVHA-----------KAEVIEDFAKFAMLLKVKRGEKEEK 70 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~S-Nsl~~ykl~eIv~A-----------qsQVV~g~~K~~l~lklkrg~k~e~ 70 (92)
-|||.++++ ||+||+.|+|||.++|.++ |+. -+..+|++| +.| |+| .+|.|+|+...| .
T Consensus 1 ~Ggw~~idv-~~~iqela~FAV~e~nk~~~~~~--L~f~~Vv~~~~~~~~~~~~~~~Q-VaG-~nY~Ltlea~d~----~ 71 (97)
T 2o9u_X 1 MGEWEIIDI-GPFTQNLGKFAVDEENKIGQYGR--LTFNKVIRPCMKKTIYENEGFRE-IKG-YEYQLYVYASDK----L 71 (97)
T ss_dssp -CCCEEECC-SHHHHHHHHHHHHHHHHHCTTCS--CCEEEEEEEEEEEEEECSSSSCS-EEE-EEEEEEEEETTE----E
T ss_pred CCCceECCC-CHHHHHHHHHHHHHHhccccCCC--cEEEEEEEcccccccccchhhee-ecc-EEEEEEEEEeCC----c
Confidence 389999999 9999999999999999987 554 345889999 999 999 999999999887 7
Q ss_pred eeeEEEec--CCeeeeecccc
Q 042638 71 LNVEVHKK--EGTFHLNQMQQ 89 (92)
Q Consensus 71 ~~vev~~~--~g~~~l~~~~~ 89 (92)
|.+.|--. ...+.|....+
T Consensus 72 yeA~V~ekpw~n~k~L~sF~~ 92 (97)
T 2o9u_X 72 FRADISEDYKTRGRKLLRFNG 92 (97)
T ss_dssp C-CEEEEETTTCCEEEEECCC
T ss_pred eEEEEEEecCCCcEEeeEccC
Confidence 88887755 67777776554
No 16
>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A
Probab=94.47 E-value=0.022 Score=38.56 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcchhhhhhhhhhhhh
Q 042638 14 PQVQDAANHAIQTIQQRSNSLFPYVLQEIVHAKAEVI 50 (92)
Q Consensus 14 P~Vq~AA~~AVk~~n~~SNsl~~ykl~eIv~AqsQVV 50 (92)
...++|...||..||++|-+.++|+|+++.-.-..+.
T Consensus 3 lsY~EAv~~Av~~~N~~S~~~nlFRLl~~~p~p~~~~ 39 (101)
T 1kwi_A 3 LSYREAVLRAVDRLNEQSSEANLYRLLELDQPPKADE 39 (101)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSEEEEEEEEC-------
T ss_pred cCHHHHHHHHHHHHhcCCCccceeeeecccCCCccCC
Confidence 3578999999999999999999999999887555554
No 17
>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A
Probab=92.28 E-value=0.084 Score=40.22 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=54.5
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhcCCCC-cchhhhhhhhhhhhhhhh-heeeeeeEeccccce
Q 042638 8 AVPVHDPQVQDAANHAIQTIQQRSNSLF-PYVLQEIVHAKAEVIEDF-AKFAMLLKVKRGEKE 68 (92)
Q Consensus 8 ~v~~~DP~Vq~AA~~AVk~~n~~SNsl~-~ykl~eIv~AqsQVV~g~-~K~~l~lklkrg~k~ 68 (92)
+++|.-=.-++||+.|+.=||-+.-|.+ +|-|..|.+|.++.+.+. -||+|..-+++=..+
T Consensus 2 ei~psh~~a~rAA~vA~hy~N~~~gSP~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~ 64 (222)
T 2bo9_B 2 EIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQK 64 (222)
T ss_dssp BCCTTSHHHHHHHHHHHHHHHHHHCBTTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTC
T ss_pred CCCCcchHHHHHHHHHHHHhhcccCCCceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecC
Confidence 5778888889999999999999999988 899999999999999887 999999998876554
No 18
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=76.46 E-value=2.2 Score=30.34 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCC-Ccchhh
Q 042638 10 PVHDPQVQDAANHAIQTIQQRSNSL-FPYVLQ 40 (92)
Q Consensus 10 ~~~DP~Vq~AA~~AVk~~n~~SNsl-~~ykl~ 40 (92)
|.++.+.+.|+++||+.||+..+-+ ..++|.
T Consensus 13 ~~~~~~~~~a~~~Av~~iN~~~~ilg~~~~l~ 44 (389)
T 4gpa_A 13 IRNTDQEYTAFRLAIFLHNTSPNASEAPFNLV 44 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHTCSCTTTCSSEEE
T ss_pred cCCChHHHHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 4567788899999999999988776 556654
No 19
>2rsx_A Uncharacterized protein YOEB; inhibitor protein, hacksaw-like fold, autolysin inhibitor, D endopeptidase inhibitor, hydrolase inhibitor; NMR {Bacillus subtilis}
Probab=73.27 E-value=2.7 Score=30.23 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=37.9
Q ss_pred hhhhhhhhhhhhh---hhheeeeeeEeccccceeeeeeEEEecCCeeeeeccc
Q 042638 39 LQEIVHAKAEVIE---DFAKFAMLLKVKRGEKEEKLNVEVHKKEGTFHLNQMQ 88 (92)
Q Consensus 39 l~eIv~AqsQVV~---g~~K~~l~lklkrg~k~e~~~vev~~~~g~~~l~~~~ 88 (92)
++.+..|+.+.+. +...|.+..-..-|..-++++|+.-+.+|.|.+|.|.
T Consensus 104 ~l~~~~akik~~~~~~nk~~~~~~vp~~~~~~~~~~kvtf~yE~~~WkIn~~d 156 (159)
T 2rsx_A 104 LLNWKKSTAKLISKKGSTITYEFTVPTLDGSPSAKRKVTFVKENKKWKVNQFD 156 (159)
T ss_dssp CBCGGGCEEEEEEEETTEEEEEEEECBTTSCCCEEEEEEEEESSSSEEESCTT
T ss_pred hhhhhhhheEEEEecCCEEEEEEEEeeCCCCceeEEEEEEEEECCEEEEeecc
Confidence 4466677766662 2256666666777788899999998889999999885
No 20
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.31 E-value=6.9 Score=25.72 Aligned_cols=25 Identities=8% Similarity=-0.025 Sum_probs=10.6
Q ss_pred CChHHHHHHHHHHHHHhhhcCCCCc
Q 042638 12 HDPQVQDAANHAIQTIQQRSNSLFP 36 (92)
Q Consensus 12 ~DP~Vq~AA~~AVk~~n~~SNsl~~ 36 (92)
.||.|+.+|..|+..+....++-++
T Consensus 186 ~~~~vr~~A~~aL~~~~~~~~~~~~ 210 (211)
T 3ltm_A 186 GTGFARKVAVNYLETHKSFNHHHHH 210 (211)
T ss_dssp CCHHHHHHHHHHHHC----------
T ss_pred CCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 4677777777777766665554433
No 21
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=43.07 E-value=14 Score=23.23 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhhhcC
Q 042638 17 QDAANHAIQTIQQRSN 32 (92)
Q Consensus 17 q~AA~~AVk~~n~~SN 32 (92)
|.||+.|+..+...||
T Consensus 73 q~AA~~AL~~L~~~s~ 88 (89)
T 2cpn_A 73 RNAAAKMLLRVSGPSS 88 (89)
T ss_dssp HHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHhhcC
Confidence 6899999999987776
No 22
>1d9c_A Interferon-gamma; helical homodimer, immune system; 2.00A {Bos taurus} SCOP: a.26.1.3 PDB: 1d9g_A 1rfb_A
Probab=41.67 E-value=12 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=13.1
Q ss_pred cccCCCChHHHHHHHHH
Q 042638 7 QAVPVHDPQVQDAANHA 23 (92)
Q Consensus 7 ~~v~~~DP~Vq~AA~~A 23 (92)
..++++||.||+.|-+=
T Consensus 96 ~~i~vnd~~VQrKAi~E 112 (121)
T 1d9c_A 96 IQIPVDDLQIQRKAINE 112 (121)
T ss_dssp HTCCSSCHHHHHHHHHT
T ss_pred HhccCCcHHHHHHHHHH
Confidence 35799999999776543
No 23
>2rig_A Interferon-gamma; cytokine; 2.30A {Oryctolagus cuniculus} SCOP: a.26.1.3
Probab=40.75 E-value=21 Score=25.33 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=17.7
Q ss_pred cccCCCChHHHHHHH-HHHHHHhhhcC
Q 042638 7 QAVPVHDPQVQDAAN-HAIQTIQQRSN 32 (92)
Q Consensus 7 ~~v~~~DP~Vq~AA~-~AVk~~n~~SN 32 (92)
..++++||.||..|- -=..-||.-|.
T Consensus 96 ~~i~vnD~~VQrKAi~EL~~V~~~lS~ 122 (144)
T 2rig_A 96 TRISVDDRLVQRKAVSELSNVLNFLSP 122 (144)
T ss_pred HhccCCcHHHHHHHHHHHHHHHHHhCc
Confidence 357999999996554 44455666554
No 24
>3ub1_A ORF13-like protein; NTF2-like, transport protein; HET: MSE; 1.80A {Clostridium perfringens}
Probab=32.82 E-value=57 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.342 Sum_probs=22.4
Q ss_pred eeeeeeEEEecCCeeeeecccccc
Q 042638 68 EEKLNVEVHKKEGTFHLNQMQQDQ 91 (92)
Q Consensus 68 ~e~~~vev~~~~g~~~l~~~~~~~ 91 (92)
.|.|.+.+.|.+++|.++.|.|..
T Consensus 227 ~e~y~L~L~k~~~~w~V~~m~~~~ 250 (261)
T 3ub1_A 227 KQGFNLTVVQEGDKFLVKTLEPRT 250 (261)
T ss_dssp EEEEEEEEEEETTEEEECCCEECS
T ss_pred EEEEEEEEEECCCeEEEEeeeccc
Confidence 899999999999999999999864
No 25
>2p58_B Putative type III secretion protein YSCF; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} PDB: 2uwj_F
Probab=30.85 E-value=8.5 Score=24.89 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=13.7
Q ss_pred cCCCChHHHHHHHHHHHHHhhh
Q 042638 9 VPVHDPQVQDAANHAIQTIQQR 30 (92)
Q Consensus 9 v~~~DP~Vq~AA~~AVk~~n~~ 30 (92)
.+|+||++.-..||++.+||.-
T Consensus 42 ~~p~nP~~La~~Q~~~~qYs~~ 63 (86)
T 2p58_B 42 DKPDNPALLADLQHSINKWSVI 63 (86)
T ss_dssp -------CCHHHHHHHTTHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999873
No 26
>1ny9_A Transcriptional activator TIPA-S; all alpha, globin like; NMR {Streptomyces lividans} SCOP: a.181.1.1
Probab=29.46 E-value=27 Score=22.95 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=16.1
Q ss_pred ccCCCChHHHHHHHHHHHHHhh
Q 042638 8 AVPVHDPQVQDAANHAIQTIQQ 29 (92)
Q Consensus 8 ~v~~~DP~Vq~AA~~AVk~~n~ 29 (92)
.++|++|+||++|.-=..-++.
T Consensus 71 g~~p~s~eaq~l~~~h~~~l~~ 92 (143)
T 1ny9_A 71 GEPADSEGAMDAAEDHRQGIAR 92 (143)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 3579999999999775554443
No 27
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=29.22 E-value=30 Score=21.20 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=19.5
Q ss_pred eeeeEeccccceeeeeeEEEec-CCeeeeec
Q 042638 57 AMLLKVKRGEKEEKLNVEVHKK-EGTFHLNQ 86 (92)
Q Consensus 57 ~l~lklkrg~k~e~~~vev~~~-~g~~~l~~ 86 (92)
.+.|.+.|+.+...+.+..... +.+|.|++
T Consensus 82 ~v~l~v~R~g~~~~~~v~~~~~~~~~~~~~~ 112 (113)
T 2pzd_A 82 QLAVQIRRGRETLTLYVTPEVTEGGGWTMFW 112 (113)
T ss_dssp SEEEEEEETTEEEEEEECCEEC---CCCCEE
T ss_pred eEEEEEEECCEEEEEEEEEeeccCCcEEEEe
Confidence 4566778888777777766666 67777654
No 28
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=27.93 E-value=58 Score=22.87 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=24.8
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhhh
Q 042638 3 CPGWQAVPVHDPQVQDAANHAIQTIQQR 30 (92)
Q Consensus 3 ~gG~~~v~~~DP~Vq~AA~~AVk~~n~~ 30 (92)
.|.|++.+.-|++|+++.+.....+-++
T Consensus 82 ~G~W~~~~i~~~~~~e~v~~Tl~~FH~k 109 (134)
T 3rpj_A 82 NGDWVNQVISKKDVIESIHETLIRFHDF 109 (134)
T ss_dssp TSCEESCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeeeccCCcHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999888887764
No 29
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=27.92 E-value=51 Score=24.13 Aligned_cols=23 Identities=22% Similarity=0.132 Sum_probs=18.6
Q ss_pred CCCChHHHHHHHHHHHHHhhhcC
Q 042638 10 PVHDPQVQDAANHAIQTIQQRSN 32 (92)
Q Consensus 10 ~~~DP~Vq~AA~~AVk~~n~~SN 32 (92)
|.+.+..+.|++.||+.||+...
T Consensus 13 ~~sg~~~~~a~~lAv~eiN~~g~ 35 (389)
T 3o21_A 13 MRNTVQEHSAFRFAVQLYNTNQN 35 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHHHHHhcCcc
Confidence 34455899999999999998753
No 30
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation, actin-binding, cytoplasm, cytoskeleton, disease mutation, phosphoprotein; 1.65A {Homo sapiens}
Probab=26.05 E-value=76 Score=18.90 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=15.6
Q ss_pred ccceeeeeeEEEec-CCeeeeecc
Q 042638 65 GEKEEKLNVEVHKK-EGTFHLNQM 87 (92)
Q Consensus 65 g~k~e~~~vev~~~-~g~~~l~~~ 87 (92)
|.+.....++|.-+ +|+|.++-.
T Consensus 38 ~p~g~~~~~~v~d~~dGty~v~Y~ 61 (89)
T 3cnk_A 38 GPRTPCEEILVKHVGSRLYSVSYL 61 (89)
T ss_dssp CSSSCCSEEEEEEEETTEEEEEEE
T ss_pred CCCCCceeEEEEECCCCEEEEEEE
Confidence 33333467788777 999998743
No 31
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=25.43 E-value=73 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.1
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhcCC
Q 042638 8 AVPVHDPQVQDAANHAIQTIQQRSNS 33 (92)
Q Consensus 8 ~v~~~DP~Vq~AA~~AVk~~n~~SNs 33 (92)
.+|++||.||+.|-+-+-.+=..|-+
T Consensus 98 k~~v~d~~vQrkAi~EL~~VM~~sG~ 123 (258)
T 1fyh_A 98 NYSVTDLNVQRKAIDELIQVMAELGA 123 (258)
T ss_dssp TCCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCc
Confidence 47999999999988877777555543
No 32
>3k7c_A Putative NTF2-like transpeptidase; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: PGE; 2.00A {Campylobacter jejuni}
Probab=25.18 E-value=96 Score=20.79 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=43.6
Q ss_pred cCCCC-hHHHHHHHHHHHHHhhhcCCCC----cchhhhhhhhhhhhhhhh-heeeeeeEeccccceeeeeeEEEecCCee
Q 042638 9 VPVHD-PQVQDAANHAIQTIQQRSNSLF----PYVLQEIVHAKAEVIEDF-AKFAMLLKVKRGEKEEKLNVEVHKKEGTF 82 (92)
Q Consensus 9 v~~~D-P~Vq~AA~~AVk~~n~~SNsl~----~ykl~eIv~AqsQVV~g~-~K~~l~lklkrg~k~e~~~vev~~~~g~~ 82 (92)
+|+.+ +.+++-+...+.+.-...-... =.+.++|.. +=+++. +++.+++..+-|+. +.-.+.+.|.+|.|
T Consensus 34 ~p~~~~~~~~e~~~gki~m~~~~~~~~~ekkGGi~~I~~~~---~~~d~~~A~V~v~v~~knG~t-~~~~i~LiK~dG~W 109 (114)
T 3k7c_A 34 LSEAKSDEEKTFVSDKITQVVAENAAKAKRMGGVKDIQIEE---KTINKDSAKIRVLVLFNNDNN-QSSNVFLAKKDRKW 109 (114)
T ss_dssp CSSCCSHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEE---EEECSSEEEEEEEEEETTSCE-EEEEEEEEESSSSE
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHcCCcceEEEEE---eeccCCEEEEEEEEEECCCCc-cccceeeEEeCCeE
Confidence 44444 5565656655554433221100 112333332 222454 88888898898888 67789999999999
Q ss_pred eee
Q 042638 83 HLN 85 (92)
Q Consensus 83 ~l~ 85 (92)
.+.
T Consensus 110 kV~ 112 (114)
T 3k7c_A 110 LVL 112 (114)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 33
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.34 E-value=73 Score=20.98 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=17.0
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 042638 11 VHDPQVQDAANHAIQTIQQ 29 (92)
Q Consensus 11 ~~DP~Vq~AA~~AVk~~n~ 29 (92)
--+|.+++|=+-||.++|+
T Consensus 56 ~~NpcIReaRRrAV~EvQ~ 74 (89)
T 2d9d_A 56 EKNPCIREARRRAVIEVQT 74 (89)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 3589999999999999986
Done!