BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042644
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 94/160 (58%), Gaps = 6/160 (3%)
Query: 2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
D LQD C D K + +NG CK P DF S+KL AG+T S++T +
Sbjct: 4 DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61 ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
A++PG NTLG+S+AR D G PH HPRA+E+ V KG V I G +D+ +++
Sbjct: 62 AEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
+++AGE V PRGL+HF FNVG A + NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
D LQD C D K + +NG CK P DF S+KL AG+T S++T +
Sbjct: 4 DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61 ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
A++PG NTLG+S+ R D G PH HPRA+E+ V KG V I G +D+ +++
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
+++AGE V PRGL+HF FNVG A + NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 93/160 (58%), Gaps = 6/160 (3%)
Query: 2 DNLQDICPTDTTKKQTIFINGLPCKSPDRIFASDFK-STKLRDAGDTDKFPYSSLTLVTA 60
D LQD C D K + +NG CK P DF S+KL AG+T S++T +
Sbjct: 4 DPLQDFCVADLDGK-AVSVNGHTCK-PMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 61 ADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKG---VVIAGFVDTNRQVFQV 117
A++PG NTLG+S+ R D G PH HPRA+E+ V KG V I G +D+ +++
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 118 MLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157
+++AGE V PRGL+HF FNVG A + NSQNPG+V
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIV 161
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54 SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
S+T T+ DFP L+ L LS L + M VPH + A+ +++ G + V+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
+VF L+ G V + P+ +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54 SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
S+T T+ DFP L+ L LS L + M VPH + A+ +++ G + V+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
+VF L+ G V + P+ +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 54 SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-R 112
S+T T+ DFP L+ L LS L + M VPH + A+ +++ G + V+ N
Sbjct: 321 SVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGE 380
Query: 113 QVFQVMLKAGEVCVFPRGLL 132
+VF L+ G V + P+ +
Sbjct: 381 RVFDGELQEGRVLIVPQNFV 400
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 55 LTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQ 113
+ VT+ D P L L LS L + M VPH + A+ +++ KG V+ N
Sbjct: 342 IKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNT 401
Query: 114 VFQVMLKAGEVCVFPR 129
VF L+AG P+
Sbjct: 402 VFDGELEAGRALTVPQ 417
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 78 LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLH 133
+ V+G V H H E+ V +G + F D N + L+AGE V P+G+ H
Sbjct: 36 VKVEGEFVWHEHADTDEVFIVXEGTLQIAFRDQN-----ITLQAGEXYVIPKGVEH 86
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 66 LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEV 124
L LGLS +L + + VPH + A +++ +G VD+N +V+ L+ G V
Sbjct: 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHV 426
Query: 125 CVFPR 129
V P+
Sbjct: 427 LVVPQ 431
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 53 SSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR 112
+ L L +A +FPG + ++ A L+ M H HP A E +V G + +
Sbjct: 218 NELRLASAKEFPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEG 275
Query: 113 QVFQVMLKAGEVCVFPRGLLH 133
+ L+ G+V P+G H
Sbjct: 276 KASVSRLQQGDVGYVPKGYGH 296
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 7 ICPTDTTKKQTIFINGLPCKSPDRIFASDFKSTKLRDAGDTD--KFPYSSLTLVTAADFP 64
I P +++ +NGL + S + L D + D K ++ + + D P
Sbjct: 262 IRPPLRSQRPQEEVNGL-----EETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLP 316
Query: 65 GLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAGE 123
L L LS R + + MV+P + A+ +L+V G V+ N +VF + G+
Sbjct: 317 ILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQ 376
Query: 124 VCVFPRG 130
+ P+G
Sbjct: 377 LLSIPQG 383
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 55 LTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQ 113
++ + + P L GLS L +G+ PH + A+ +++V +G V+
Sbjct: 351 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNA 410
Query: 114 VFQVMLKAGEVCVFPRGLL--HFGFNVGYEF 142
VF L+ G++ V P+ + G G E+
Sbjct: 411 VFDGELRRGQLLVVPQNFVVAEQGGEQGLEY 441
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 55 LTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVD-TNRQ 113
++ + + P L GLS L +G+ PH + A+ +++V +G V+
Sbjct: 350 ISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNA 409
Query: 114 VFQVMLKAGEVCVFPRGLL--HFGFNVGYEF 142
VF L+ G++ V P+ + G G E+
Sbjct: 410 VFDGELRRGQLLVVPQNFVVAEQGGEQGLEY 440
>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
Length = 442
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 111 NRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDF--D 168
R V + MLK G++ FPRG +H + T + +S + + + + ++ DF D
Sbjct: 195 GRPVHEFMLKPGDLLYFPRGTIH-------QADTPAGLAHSTHVTISTYQNNSWGDFLLD 247
Query: 169 TIDDLV 174
TI LV
Sbjct: 248 TISGLV 253
>pdb|4DIQ|A Chain A, Crystal Structure Of Human No66
pdb|4DIQ|B Chain B, Crystal Structure Of Human No66
Length = 489
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 109 DTNRQVFQVMLKAGEVCVFPRGLLH 133
D V Q +L+ G++ FPRG +H
Sbjct: 222 DLGEPVLQTVLEPGDLLYFPRGFIH 246
>pdb|4E4H|A Chain A, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|B Chain B, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|C Chain C, Crystal Structure Of Histone Demethylase No66
pdb|4E4H|D Chain D, Crystal Structure Of Histone Demethylase No66
Length = 463
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 109 DTNRQVFQVMLKAGEVCVFPRGLLH 133
D V Q +L+ G++ FPRG +H
Sbjct: 203 DLGEPVLQTVLEPGDLLYFPRGFIH 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,955,819
Number of Sequences: 62578
Number of extensions: 227144
Number of successful extensions: 681
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 659
Number of HSP's gapped (non-prelim): 24
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)