Query 042644
Match_columns 205
No_of_seqs 238 out of 1743
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:13:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 1.1E-26 2.4E-31 206.2 19.3 159 26-191 204-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1.6E-25 3.4E-30 203.8 17.8 145 45-193 322-470 (493)
3 PLN00212 glutelin; Provisional 99.9 3.7E-25 8.1E-30 201.4 17.9 147 52-202 62-260 (493)
4 PF00190 Cupin_1: Cupin; Inte 99.9 9.6E-25 2.1E-29 170.2 11.5 125 48-185 11-143 (144)
5 TIGR03404 bicupin_oxalic bicup 99.9 4.4E-23 9.6E-28 183.2 16.2 133 52-191 50-185 (367)
6 smart00835 Cupin_1 Cupin. This 99.9 3.2E-21 7E-26 150.6 17.2 134 48-185 8-145 (146)
7 COG2140 Thermophilic glucose-6 99.7 4.9E-17 1.1E-21 132.5 13.3 146 32-188 49-196 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 9.7E-14 2.1E-18 94.5 8.1 70 75-149 2-71 (71)
9 COG0662 {ManC} Mannose-6-phosp 99.4 2.6E-12 5.7E-17 98.2 12.1 81 68-153 33-113 (127)
10 COG1917 Uncharacterized conser 99.4 2E-12 4.3E-17 98.9 11.4 84 63-151 35-118 (131)
11 PRK04190 glucose-6-phosphate i 99.4 6.1E-12 1.3E-16 102.6 14.2 98 54-152 52-157 (191)
12 PRK13290 ectC L-ectoine syntha 99.4 7.8E-12 1.7E-16 95.5 11.7 82 69-156 33-114 (125)
13 COG3837 Uncharacterized conser 99.2 7.4E-11 1.6E-15 92.1 10.2 82 65-153 38-122 (161)
14 COG4101 Predicted mannose-6-ph 99.2 1.8E-10 3.9E-15 86.0 9.7 85 69-156 44-129 (142)
15 TIGR01479 GMP_PMI mannose-1-ph 99.2 4E-10 8.6E-15 103.5 13.9 79 68-151 373-451 (468)
16 PF01050 MannoseP_isomer: Mann 99.1 1.1E-09 2.4E-14 86.2 12.3 86 52-149 51-136 (151)
17 PRK11171 hypothetical protein; 99.1 1.4E-09 3E-14 93.1 13.8 78 68-150 58-136 (266)
18 PRK15460 cpsB mannose-1-phosph 99.1 7.4E-10 1.6E-14 101.8 12.4 78 68-150 382-459 (478)
19 PRK09943 DNA-binding transcrip 99.1 1.5E-09 3.2E-14 87.8 12.2 76 69-150 105-181 (185)
20 TIGR03214 ura-cupin putative a 99.1 1.8E-09 4E-14 92.1 11.5 75 70-150 178-253 (260)
21 TIGR03214 ura-cupin putative a 99.0 9.6E-09 2.1E-13 87.6 12.9 77 69-150 56-133 (260)
22 PRK11171 hypothetical protein; 98.9 7.9E-09 1.7E-13 88.4 11.2 75 70-150 183-258 (266)
23 PF06560 GPI: Glucose-6-phosph 98.9 4.3E-08 9.3E-13 79.3 11.7 86 66-151 45-146 (182)
24 PF02041 Auxin_BP: Auxin bindi 98.8 4.6E-08 1E-12 75.9 10.9 86 70-157 43-133 (167)
25 TIGR03037 anthran_nbaC 3-hydro 98.6 3E-07 6.5E-12 72.7 9.7 59 79-139 36-94 (159)
26 PRK13264 3-hydroxyanthranilate 98.6 2.5E-07 5.4E-12 74.3 9.2 69 76-148 39-107 (177)
27 PF11699 CENP-C_C: Mif2/CENP-C 98.6 9E-07 2E-11 63.1 9.7 73 70-147 11-83 (85)
28 PF02311 AraC_binding: AraC-li 98.6 4.9E-07 1.1E-11 67.3 8.7 63 80-148 12-74 (136)
29 PF03079 ARD: ARD/ARD' family; 98.5 7.4E-07 1.6E-11 70.6 9.9 67 83-150 84-150 (157)
30 PRK15457 ethanolamine utilizat 98.4 2.8E-06 6.1E-11 70.8 11.1 72 68-149 154-225 (233)
31 COG1791 Uncharacterized conser 98.4 2.2E-06 4.7E-11 68.0 9.7 71 85-157 89-159 (181)
32 PF12973 Cupin_7: ChrR Cupin-l 98.4 6.3E-07 1.4E-11 64.4 5.7 80 52-147 9-88 (91)
33 TIGR02451 anti_sig_ChrR anti-s 98.4 1.2E-06 2.7E-11 72.7 7.7 74 70-153 126-199 (215)
34 PRK10371 DNA-binding transcrip 98.4 2E-06 4.2E-11 74.7 8.9 63 72-140 27-89 (302)
35 TIGR02272 gentisate_1_2 gentis 98.3 1.7E-06 3.6E-11 76.3 7.4 77 70-151 80-156 (335)
36 COG4297 Uncharacterized protei 98.3 2.9E-06 6.4E-11 65.1 6.8 66 81-149 52-118 (163)
37 PF06339 Ectoine_synth: Ectoin 98.2 1.7E-05 3.8E-10 60.0 10.3 83 67-155 31-113 (126)
38 PRK10296 DNA-binding transcrip 98.2 1.2E-05 2.5E-10 68.5 10.4 52 81-138 33-84 (278)
39 PF05523 FdtA: WxcM-like, C-te 98.2 3.9E-05 8.4E-10 59.0 11.7 95 52-151 15-111 (131)
40 PRK13500 transcriptional activ 98.1 1.4E-05 2.9E-10 69.7 9.0 56 79-140 56-111 (312)
41 PRK13501 transcriptional activ 98.1 1.4E-05 3E-10 68.6 8.3 56 79-140 26-81 (290)
42 COG3435 Gentisate 1,2-dioxygen 98.0 1.1E-05 2.4E-10 69.4 5.9 94 54-152 70-168 (351)
43 PF14499 DUF4437: Domain of un 98.0 1.2E-05 2.5E-10 68.2 5.7 74 68-146 33-106 (251)
44 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2.7E-05 5.9E-10 66.3 7.7 59 80-143 32-90 (287)
45 PRK13502 transcriptional activ 98.0 3.9E-05 8.4E-10 65.3 8.7 56 79-140 26-81 (282)
46 PF05899 Cupin_3: Protein of u 97.9 6.1E-05 1.3E-09 52.2 6.8 60 70-136 6-65 (74)
47 PRK13503 transcriptional activ 97.8 4.7E-05 1E-09 64.5 6.4 53 80-138 24-76 (278)
48 KOG2107 Uncharacterized conser 97.8 5.1E-05 1.1E-09 60.0 5.6 57 83-140 85-141 (179)
49 TIGR02272 gentisate_1_2 gentis 97.7 0.00012 2.5E-09 64.8 8.0 86 52-147 232-318 (335)
50 PF06249 EutQ: Ethanolamine ut 97.7 0.00021 4.6E-09 56.2 7.7 69 70-148 76-144 (152)
51 COG3257 GlxB Uncharacterized p 97.6 0.00043 9.4E-09 57.3 9.3 76 70-150 60-136 (264)
52 PF06052 3-HAO: 3-hydroxyanthr 97.5 0.0013 2.7E-08 51.5 10.0 64 74-139 36-99 (151)
53 COG1898 RfbC dTDP-4-dehydrorha 97.5 0.0011 2.4E-08 53.3 9.8 67 80-146 54-129 (173)
54 COG4766 EutQ Ethanolamine util 97.5 0.0012 2.6E-08 51.7 8.9 69 70-148 99-167 (176)
55 TIGR01221 rmlC dTDP-4-dehydror 97.3 0.0062 1.4E-07 49.2 11.8 77 79-156 52-139 (176)
56 PF00908 dTDP_sugar_isom: dTDP 97.3 0.0031 6.8E-08 50.9 9.7 68 79-147 51-129 (176)
57 PF05995 CDO_I: Cysteine dioxy 97.2 0.0083 1.8E-07 48.2 11.6 84 70-153 74-166 (175)
58 COG3450 Predicted enzyme of th 97.0 0.002 4.4E-08 48.5 5.6 61 70-137 44-104 (116)
59 COG3435 Gentisate 1,2-dioxygen 96.6 0.0088 1.9E-07 51.9 7.2 92 49-148 240-331 (351)
60 PF13621 Cupin_8: Cupin-like d 96.3 0.059 1.3E-06 44.4 10.7 69 73-142 132-236 (251)
61 PF07385 DUF1498: Protein of u 96.0 0.051 1.1E-06 45.2 8.5 67 75-141 91-180 (225)
62 PF02678 Pirin: Pirin; InterP 95.6 0.046 1E-06 40.6 6.2 62 81-146 39-103 (107)
63 PF12852 Cupin_6: Cupin 95.5 0.052 1.1E-06 43.4 6.9 44 93-139 36-79 (186)
64 PF08007 Cupin_4: Cupin superf 95.5 0.12 2.7E-06 45.3 9.5 67 72-139 114-200 (319)
65 PF04209 HgmA: homogentisate 1 95.3 0.14 3E-06 46.7 9.5 54 87-147 141-194 (424)
66 PRK10572 DNA-binding transcrip 95.3 0.085 1.8E-06 45.0 7.7 45 91-140 48-92 (290)
67 PF13759 2OG-FeII_Oxy_5: Putat 95.3 0.067 1.5E-06 38.7 6.1 74 76-149 5-100 (101)
68 PRK05341 homogentisate 1,2-dio 95.2 0.19 4E-06 46.0 9.9 58 84-147 146-203 (438)
69 PLN02658 homogentisate 1,2-dio 95.1 0.37 8.1E-06 44.0 11.6 55 87-147 142-196 (435)
70 PRK12335 tellurite resistance 94.9 0.17 3.7E-06 43.5 8.5 59 80-138 20-81 (287)
71 TIGR01015 hmgA homogentisate 1 94.8 0.28 6E-06 44.8 9.9 57 84-147 140-196 (429)
72 COG1741 Pirin-related protein 94.8 0.11 2.3E-06 45.0 6.9 68 75-146 48-119 (276)
73 PF02373 JmjC: JmjC domain, hy 94.7 0.073 1.6E-06 38.7 4.9 28 114-141 80-107 (114)
74 COG3257 GlxB Uncharacterized p 94.2 0.49 1.1E-05 39.5 9.2 74 68-147 179-253 (264)
75 TIGR02466 conserved hypothetic 94.2 0.2 4.3E-06 41.3 6.9 78 73-150 98-197 (201)
76 COG3806 ChrR Transcriptional a 94.1 0.33 7.1E-06 39.9 7.8 73 70-152 127-199 (216)
77 PRK10579 hypothetical protein; 94.1 0.95 2.1E-05 32.8 9.4 55 77-137 29-83 (94)
78 COG5553 Predicted metal-depend 94.0 0.27 5.9E-06 39.1 7.0 78 71-150 73-156 (191)
79 PF05726 Pirin_C: Pirin C-term 94.0 0.66 1.4E-05 33.8 8.8 69 74-150 2-70 (104)
80 PF14499 DUF4437: Domain of un 94.0 0.057 1.2E-06 46.0 3.4 76 70-150 170-245 (251)
81 COG3822 ABC-type sugar transpo 93.9 0.31 6.8E-06 39.8 7.4 66 74-139 89-177 (225)
82 PF06172 Cupin_5: Cupin superf 93.9 1.4 3.1E-05 34.1 10.8 77 70-147 40-123 (139)
83 PRK09391 fixK transcriptional 93.9 1.3 2.8E-05 36.6 11.4 132 69-201 34-212 (230)
84 PF06865 DUF1255: Protein of u 93.8 0.57 1.2E-05 34.0 7.9 69 72-148 24-92 (94)
85 PF07847 DUF1637: Protein of u 93.7 0.42 9.1E-06 39.4 7.9 85 66-151 39-143 (200)
86 PRK11753 DNA-binding transcrip 93.6 1.1 2.4E-05 35.9 10.4 130 74-204 21-204 (211)
87 PF05118 Asp_Arg_Hydrox: Aspar 93.2 0.77 1.7E-05 36.3 8.6 70 72-146 81-155 (163)
88 PRK09685 DNA-binding transcrip 93.1 0.47 1E-05 40.5 7.8 66 70-140 44-114 (302)
89 KOG3706 Uncharacterized conser 92.7 0.077 1.7E-06 48.8 2.4 62 75-137 320-403 (629)
90 COG3508 HmgA Homogentisate 1,2 92.6 1.9 4.2E-05 38.5 10.8 72 69-146 123-194 (427)
91 PRK00924 5-keto-4-deoxyuronate 91.8 1.3 2.8E-05 38.2 8.7 78 70-149 174-257 (276)
92 PF04962 KduI: KduI/IolB famil 91.4 4.3 9.3E-05 34.8 11.5 95 54-153 136-247 (261)
93 PF09313 DUF1971: Domain of un 91.4 1.9 4.1E-05 30.4 7.8 60 80-140 12-75 (82)
94 KOG2757 Mannose-6-phosphate is 91.3 1.4 3E-05 39.5 8.5 78 64-149 328-405 (411)
95 PRK15131 mannose-6-phosphate i 91.1 1.8 4E-05 39.1 9.4 59 70-136 320-378 (389)
96 KOG3995 3-hydroxyanthranilate 90.9 0.6 1.3E-05 38.8 5.5 57 79-137 41-97 (279)
97 PLN02288 mannose-6-phosphate i 90.9 0.92 2E-05 41.2 7.3 58 70-131 333-390 (394)
98 TIGR00218 manA mannose-6-phosp 90.7 2.6 5.7E-05 36.6 9.7 61 68-136 232-292 (302)
99 PF11142 DUF2917: Protein of u 89.8 1.7 3.7E-05 29.0 6.1 57 76-137 2-58 (63)
100 PF14525 AraC_binding_2: AraC- 89.7 5.5 0.00012 30.3 9.9 65 70-140 33-98 (172)
101 PF00027 cNMP_binding: Cyclic 85.9 3.3 7.3E-05 27.7 6.0 48 77-126 3-52 (91)
102 PRK13918 CRP/FNR family transc 83.8 5.9 0.00013 31.5 7.3 123 75-200 8-181 (202)
103 COG3123 Uncharacterized protei 83.3 4.8 0.0001 28.6 5.6 43 91-136 40-82 (94)
104 PHA02984 hypothetical protein; 82.9 12 0.00026 32.2 9.0 60 93-154 92-154 (286)
105 COG2850 Uncharacterized conser 81.9 3.5 7.7E-05 37.0 5.6 59 77-138 125-202 (383)
106 COG1482 ManA Phosphomannose is 81.8 14 0.00031 32.5 9.3 59 70-136 241-299 (312)
107 PRK03606 ureidoglycolate hydro 79.8 13 0.00029 29.5 7.8 78 70-147 55-139 (162)
108 PF04115 Ureidogly_hydro: Urei 79.3 9.5 0.00021 30.3 6.9 79 70-148 56-143 (165)
109 PRK00924 5-keto-4-deoxyuronate 78.8 20 0.00044 31.0 9.2 52 91-147 72-126 (276)
110 PRK11161 fumarate/nitrate redu 77.6 15 0.00032 29.9 7.9 35 168-202 184-218 (235)
111 PLN02868 acyl-CoA thioesterase 77.3 11 0.00023 34.2 7.5 52 75-127 33-84 (413)
112 PHA02890 hypothetical protein; 76.9 26 0.00057 30.0 9.0 58 93-154 91-151 (278)
113 KOG2130 Phosphatidylserine-spe 76.4 4.6 9.9E-05 35.7 4.5 44 114-157 262-305 (407)
114 PF04622 ERG2_Sigma1R: ERG2 an 75.3 8.4 0.00018 32.2 5.7 94 79-182 109-204 (216)
115 smart00100 cNMP Cyclic nucleot 74.9 21 0.00045 24.4 7.1 53 75-128 19-72 (120)
116 cd00038 CAP_ED effector domain 74.6 15 0.00033 25.1 6.3 53 74-127 18-71 (115)
117 COG3718 IolB Uncharacterized e 74.4 27 0.00059 29.6 8.4 74 78-151 160-258 (270)
118 TIGR00218 manA mannose-6-phosp 73.6 2.6 5.6E-05 36.6 2.4 24 116-141 152-175 (302)
119 PF04962 KduI: KduI/IolB famil 72.9 27 0.00059 29.9 8.4 65 70-140 26-99 (261)
120 PRK10402 DNA-binding transcrip 72.8 14 0.00031 30.1 6.6 123 76-201 34-202 (226)
121 COG1482 ManA Phosphomannose is 71.3 3.7 7.9E-05 36.1 2.8 21 116-136 159-179 (312)
122 KOG2131 Uncharacterized conser 68.0 6 0.00013 35.6 3.4 63 77-141 203-294 (427)
123 PRK15131 mannose-6-phosphate i 67.6 5.9 0.00013 35.9 3.4 30 115-146 237-266 (389)
124 PRK13395 ureidoglycolate hydro 64.3 44 0.00094 26.9 7.4 66 83-148 70-141 (171)
125 TIGR03697 NtcA_cyano global ni 62.7 19 0.00042 28.0 5.2 35 168-202 143-177 (193)
126 PRK10202 ebgC cryptic beta-D-g 62.3 40 0.00087 26.2 6.8 52 85-136 58-127 (149)
127 PRK15186 AraC family transcrip 61.7 35 0.00075 29.6 7.0 46 93-142 39-84 (291)
128 KOG1417 Homogentisate 1,2-diox 61.4 92 0.002 27.5 9.3 77 70-151 133-209 (446)
129 COG0664 Crp cAMP-binding prote 60.6 39 0.00085 26.2 6.7 124 74-201 24-204 (214)
130 COG3718 IolB Uncharacterized e 58.4 92 0.002 26.5 8.5 84 54-141 15-103 (270)
131 PRK14584 hmsS hemin storage sy 58.3 19 0.00041 28.5 4.2 36 167-202 97-138 (153)
132 PRK14585 pgaD putative PGA bio 57.8 13 0.00027 28.8 3.1 26 167-192 88-113 (137)
133 KOG4281 Uncharacterized conser 56.1 5.6 0.00012 33.2 1.0 42 67-108 71-112 (236)
134 PRK02290 3-dehydroquinate synt 56.1 61 0.0013 29.0 7.5 83 52-138 252-337 (344)
135 PRK09392 ftrB transcriptional 55.4 31 0.00066 28.1 5.4 52 75-127 32-83 (236)
136 PF04074 DUF386: Domain of unk 54.3 75 0.0016 24.5 7.2 54 83-136 60-134 (153)
137 PF13640 2OG-FeII_Oxy_3: 2OG-F 54.2 29 0.00062 24.2 4.4 62 77-138 5-86 (100)
138 COG1741 Pirin-related protein 52.4 1.6E+02 0.0034 25.5 12.2 43 62-106 165-207 (276)
139 PF00325 Crp: Bacterial regula 51.8 8.3 0.00018 22.2 1.0 29 169-197 3-31 (32)
140 PHA00672 hypothetical protein 51.0 1.1E+02 0.0024 23.5 7.2 69 69-144 45-113 (152)
141 PF13994 PgaD: PgaD-like prote 51.0 19 0.00042 27.6 3.3 25 168-192 100-124 (138)
142 TIGR00022 uncharacterized prot 50.9 57 0.0012 24.9 5.9 27 83-109 60-86 (142)
143 PF13384 HTH_23: Homeodomain-l 49.2 18 0.0004 22.0 2.4 29 168-196 17-45 (50)
144 KOG3416 Predicted nucleic acid 48.7 75 0.0016 24.4 6.0 65 64-137 12-80 (134)
145 KOG1633 F-box protein JEMMA an 46.6 24 0.00051 35.0 3.8 68 75-143 140-224 (776)
146 PF01959 DHQS: 3-dehydroquinat 45.3 63 0.0014 29.0 5.9 83 52-138 262-347 (354)
147 PF13545 HTH_Crp_2: Crp-like h 44.4 16 0.00034 24.3 1.7 34 168-201 28-61 (76)
148 PF02796 HTH_7: Helix-turn-hel 41.1 34 0.00074 20.7 2.7 24 168-191 21-44 (45)
149 COG2731 EbgC Beta-galactosidas 39.9 96 0.0021 24.5 5.6 58 83-140 60-137 (154)
150 PF13464 DUF4115: Domain of un 39.8 1.2E+02 0.0025 20.5 7.4 47 99-146 5-52 (77)
151 PLN02288 mannose-6-phosphate i 39.3 22 0.00048 32.3 2.2 21 116-136 252-272 (394)
152 PLN03192 Voltage-dependent pot 36.2 93 0.002 30.8 6.2 52 74-126 398-449 (823)
153 KOG1356 Putative transcription 35.2 14 0.00031 36.5 0.4 57 78-139 762-823 (889)
154 PF13412 HTH_24: Winged helix- 35.2 33 0.00071 20.8 1.9 34 166-199 15-48 (48)
155 PF14801 GCD14_N: tRNA methylt 34.8 95 0.002 20.1 4.0 31 104-134 11-41 (54)
156 COG3717 KduI 5-keto 4-deoxyuro 34.3 3E+02 0.0064 23.6 8.8 81 67-149 173-259 (278)
157 smart00550 Zalpha Z-DNA-bindin 34.3 40 0.00086 22.4 2.4 32 168-199 22-53 (68)
158 KOG0500 Cyclic nucleotide-gate 34.0 86 0.0019 29.5 5.1 47 76-125 333-379 (536)
159 smart00420 HTH_DEOR helix_turn 33.4 63 0.0014 19.1 3.1 35 168-202 14-48 (53)
160 PF06413 Neugrin: Neugrin; In 32.6 44 0.00096 28.0 2.8 27 169-195 30-56 (225)
161 PF06719 AraC_N: AraC-type tra 30.8 2.5E+02 0.0054 21.6 9.9 52 92-148 23-77 (155)
162 PF01987 AIM24: Mitochondrial 29.7 93 0.002 25.2 4.3 42 95-137 132-173 (215)
163 PF09012 FeoC: FeoC like trans 29.5 31 0.00066 22.9 1.2 34 168-201 14-47 (69)
164 KOG2968 Predicted esterase of 29.5 27 0.00059 35.2 1.2 62 64-126 499-561 (1158)
165 KOG0498 K+-channel ERG and rel 28.7 94 0.002 30.7 4.7 48 78-126 447-494 (727)
166 PF13613 HTH_Tnp_4: Helix-turn 27.8 56 0.0012 20.5 2.1 23 168-190 19-41 (53)
167 PF10365 DUF2436: Domain of un 27.7 65 0.0014 25.2 2.8 34 4-39 108-141 (161)
168 TIGR03697 NtcA_cyano global ni 27.4 52 0.0011 25.6 2.4 36 92-127 11-47 (193)
169 smart00419 HTH_CRP helix_turn_ 27.1 80 0.0017 18.4 2.7 33 168-200 8-40 (48)
170 PF14502 HTH_41: Helix-turn-he 26.3 63 0.0014 20.4 2.1 34 170-203 8-41 (48)
171 PF13011 LZ_Tnp_IS481: leucine 26.0 48 0.001 23.5 1.7 33 168-200 25-57 (85)
172 PF02787 CPSase_L_D3: Carbamoy 25.7 56 0.0012 24.6 2.1 25 168-192 72-96 (123)
173 PHA02591 hypothetical protein; 25.5 90 0.002 21.9 2.9 32 159-191 51-82 (83)
174 cd00092 HTH_CRP helix_turn_hel 25.4 76 0.0016 20.1 2.5 34 168-201 25-58 (67)
175 PF04703 FaeA: FaeA-like prote 24.8 46 0.00099 22.1 1.3 35 168-202 15-49 (62)
176 PRK05467 Fe(II)-dependent oxyg 24.4 2.4E+02 0.0052 23.6 5.9 24 116-139 142-165 (226)
177 PF08220 HTH_DeoR: DeoR-like h 23.8 55 0.0012 20.9 1.6 30 168-197 14-43 (57)
178 KOG2132 Uncharacterized conser 23.3 58 0.0013 29.0 2.0 74 63-137 242-348 (355)
179 PF15513 DUF4651: Domain of un 23.1 1.6E+02 0.0035 19.6 3.6 23 104-126 37-59 (62)
180 COG2144 Selenophosphate synthe 22.8 54 0.0012 28.8 1.7 39 87-128 131-169 (324)
181 COG2512 Predicted membrane-ass 21.8 85 0.0018 26.8 2.7 35 169-203 211-245 (258)
182 smart00345 HTH_GNTR helix_turn 21.7 1E+02 0.0022 18.7 2.6 30 170-199 22-51 (60)
183 COG3542 Uncharacterized conser 21.2 4.2E+02 0.0092 21.0 12.1 65 72-139 45-118 (162)
184 TIGR03643 conserved hypothetic 20.7 1E+02 0.0022 21.2 2.3 25 168-192 13-37 (72)
185 PHA02699 hypothetical protein; 20.5 2.6E+02 0.0057 25.4 5.5 74 76-149 148-225 (466)
186 COG3093 VapI Plasmid maintenan 20.3 64 0.0014 23.8 1.4 21 173-193 57-77 (104)
187 PRK13918 CRP/FNR family transc 20.3 72 0.0016 25.0 1.9 11 168-178 160-170 (202)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.95 E-value=1.1e-26 Score=206.17 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=140.4
Q ss_pred CCCCCCCCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEE
Q 042644 26 KSPDRIFASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIA 105 (205)
Q Consensus 26 k~~~~~~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v 105 (205)
+.+..-.+..|+++....++. ... ||+++.+++.+||+++ ++++++++++||++.++|||++++|++||++|++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~-~~~-gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~ 279 (367)
T TIGR03404 204 TGPAGEVPGPFTYHLSEQKPK-QVP-GGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARM 279 (367)
T ss_pred cCCCCCCCccEEEEhhhCCce-ecC-CceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEE
Confidence 334444555688887766654 333 7799999999999988 699999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHH
Q 042644 106 GFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTI 185 (205)
Q Consensus 106 ~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v 185 (205)
.+.+++++.+...+++||+++||+|..|+++|.|+++++++++|++..++.+.+++++. .+|.+||+++|+++.+++
T Consensus 280 ~v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~---~~p~~vl~~~~~~~~~~~ 356 (367)
T TIGR03404 280 TVFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLA---LTPPQLVAAHLNLDDEVI 356 (367)
T ss_pred EEEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHh---hCCHHHHHHHhCcCHHHH
Confidence 99887777678999999999999999999999999999999999999999998877664 589999999999999999
Q ss_pred HHhhhc
Q 042644 186 RVSEMS 191 (205)
Q Consensus 186 ~~l~~~ 191 (205)
++|++.
T Consensus 357 ~~l~~~ 362 (367)
T TIGR03404 357 DSLKKE 362 (367)
T ss_pred Hhcccc
Confidence 999865
No 2
>PLN00212 glutelin; Provisional
Probab=99.94 E-value=1.6e-25 Score=203.84 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=128.6
Q ss_pred CCC-CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcCC
Q 042644 45 GDT-DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAG 122 (205)
Q Consensus 45 ~~~-~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~G 122 (205)
.++ ++. +|+++.+++.+||+|+.+++++.+++|.+|++.+||||++|+|++||++|++++++++++ ++++..+|++|
T Consensus 322 ad~y~~~-~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~G 400 (493)
T PLN00212 322 ADTYNPR-AGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPG 400 (493)
T ss_pred cCccCCC-ceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCC
Confidence 445 888 999999999999999999999999999999999999999999999999999999999877 57889999999
Q ss_pred CEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeecc--ccccCCCCCCHHHHHhhcCCCHHHHHHhhhcCC
Q 042644 123 EVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSIS--DAAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHF 193 (205)
Q Consensus 123 Dv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~--~~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~ 193 (205)
|+++||+|.+|.... +++.+.++++.++.++-...++ .++|+ .+|.+||++||+++++++++|+.+..
T Consensus 401 dvfVVPqg~~v~~~A-~~egfe~v~F~tna~~~~s~laG~~Sv~~--alp~eVla~Af~is~eea~~lk~n~~ 470 (493)
T PLN00212 401 QLLIIPQHYAVLKKA-EREGCQYIAFKTNANAMVSHIAGKNSIFR--ALPVDVIANAYRISREEARRLKNNRG 470 (493)
T ss_pred CEEEECCCCeEEEee-cCCceEEEEeecCCCccccccccHHHHHH--hCCHHHHHHHcCCCHHHHHHHHhccc
Confidence 999999999999865 5677888887766665444443 57888 79999999999999999999998853
No 3
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=3.7e-25 Score=201.40 Aligned_cols=147 Identities=14% Similarity=0.223 Sum_probs=126.5
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-----------------
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV----------------- 114 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~----------------- 114 (205)
||.+..|+ .+.+.|.+.|+++.|++|+|+|+++||+| ++++++||++|++.++++.|++..
T Consensus 62 ~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~ 139 (493)
T PLN00212 62 AGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQS 139 (493)
T ss_pred CceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccc
Confidence 77666665 67899999999999999999999999999 999999999999999999875321
Q ss_pred --------EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCc--------eeeccc-----------------
Q 042644 115 --------FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPG--------VVSISD----------------- 161 (205)
Q Consensus 115 --------~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg--------~~~~~~----------------- 161 (205)
..+.+++||+++||+|++||++|.|+++++++++++..++. .|.++.
T Consensus 140 ~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~~~ 219 (493)
T PLN00212 140 QKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQHS 219 (493)
T ss_pred cccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccccc
Confidence 02699999999999999999999999999999888755432 344433
Q ss_pred --cccCCCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644 162 --AAFSDFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK 202 (205)
Q Consensus 162 --~~f~~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~ 202 (205)
++|+ +|++++|++||+++.+++++|++++|++|.|+=++
T Consensus 220 ~~nifs--GF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~ 260 (493)
T PLN00212 220 GQNIFS--GFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVK 260 (493)
T ss_pred cCchhh--cCCHHHHHHHHCCCHHHHHHHhccccCCccEEEEC
Confidence 4888 99999999999999999999999999998887554
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.92 E-value=9.6e-25 Score=170.16 Aligned_cols=125 Identities=28% Similarity=0.398 Sum_probs=107.0
Q ss_pred CCCCCeeEEEeccCCCCCCCcc-ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-----eEEEEE--E
Q 042644 48 DKFPYSSLTLVTAADFPGLNTL-GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVM--L 119 (205)
Q Consensus 48 ~~~~g~~~~~~~~~~~P~l~~~-gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~~~~--l 119 (205)
+.. +|+++.++..++|.+... ++++.+..++||++.+|||| +++|+.||++|+++++++.+++ +....+ +
T Consensus 11 ~~~-~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l 88 (144)
T PF00190_consen 11 SNE-GGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRL 88 (144)
T ss_dssp EET-TEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEE
T ss_pred cCC-CEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeee
Confidence 455 889999999999965444 56677777899999999999 9999999999999999999876 355666 9
Q ss_pred cCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHH
Q 042644 120 KAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTI 185 (205)
Q Consensus 120 ~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v 185 (205)
++||++++|+|.+||++|.++++...+.+|++.++... +++++++++|+++++++
T Consensus 89 ~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-----------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 89 KAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-----------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp ETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-----------SSHHHHHHHEESSHHHH
T ss_pred ecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-----------CCcHHHHHhcCCCcCcC
Confidence 99999999999999999999888888888888877764 68999999999998775
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.90 E-value=4.4e-23 Score=183.17 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=117.8
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL 131 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~ 131 (205)
||+++.++..+||++++ +++.++++.||++.++||| ++.|++||++|++++++++++++.+...|++||+++||+|.
T Consensus 50 gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~ 126 (367)
T TIGR03404 50 GGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI 126 (367)
T ss_pred CceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence 88999999999999984 7999999999999999999 57899999999999999988788777799999999999999
Q ss_pred eeEEEecCCccEEEEEEEeCCC---CceeeccccccCCCCCCHHHHHhhcCCCHHHHHHhhhc
Q 042644 132 LHFGFNVGYEFATVFSVLNSQN---PGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMS 191 (205)
Q Consensus 132 ~H~~~N~g~~~a~~l~~~~s~~---pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~ 191 (205)
+|+++|.+ +.++++.+|++.. +..+.+..+ |+ .+|.+||+++|+++++++++|++.
T Consensus 127 ~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~--~~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 127 PHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LA--HTPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred eEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HH--hCCHHHHHHHhCCCHHHHHhcccc
Confidence 99999985 5678888888764 445556554 55 589999999999999999999865
No 6
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.88 E-value=3.2e-21 Score=150.61 Aligned_cols=134 Identities=31% Similarity=0.525 Sum_probs=115.7
Q ss_pred CCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC-CeEEEEEEcCCCEEE
Q 042644 48 DKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN-RQVFQVMLKAGEVCV 126 (205)
Q Consensus 48 ~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-~~~~~~~l~~GDv~~ 126 (205)
+.. ||++..++..++|.+++.++.+.+++++||+..++|||++..|++||++|++.+.+.+.+ ++.....+++||+++
T Consensus 8 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ 86 (146)
T smart00835 8 SNE-GGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFV 86 (146)
T ss_pred cCC-CceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEE
Confidence 444 889999999999999999999999999999999999998889999999999999987653 355689999999999
Q ss_pred eCCCCeeEEEecCCccEEEEEEEeCCCCcee-ec--cccccCCCCCCHHHHHhhcCCCHHHH
Q 042644 127 FPRGLLHFGFNVGYEFATVFSVLNSQNPGVV-SI--SDAAFSDFDTIDDLVRKFIPFLCWTI 185 (205)
Q Consensus 127 vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~-~~--~~~~f~~~~~~~evLa~af~v~~~~v 185 (205)
+|+|..|++.|.+++++++++ +.+++|..- .+ ..++|. ++++++++++|+++++++
T Consensus 87 ip~g~~H~~~n~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 87 VPQGHPHFQVNSGDENLEFVA-FNTNDPNRRFFLAGRNSVLR--GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred ECCCCEEEEEcCCCCCEEEEE-EecCCCCceeEeecccchhh--cCCHHHHHHHhCcChHHc
Confidence 999999999999999999885 656665432 22 246777 899999999999999765
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.74 E-value=4.9e-17 Score=132.54 Aligned_cols=146 Identities=21% Similarity=0.165 Sum_probs=119.0
Q ss_pred CCCCceeecccCCCCCCCCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCe--EEEEEecEEEEEEEe
Q 042644 32 FASDFKSTKLRDAGDTDKFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASE--MLFVFKGVVIAGFVD 109 (205)
Q Consensus 32 ~~~df~~~~~~~~~~~~~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~E--i~yVl~G~~~v~~~~ 109 (205)
..+||+|..+..... .. ||.+.......+|+- +...+.+.||++...||||++.| |.||++|++++.+.+
T Consensus 49 ~~~~~~yel~~~~~~--~~-~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~ 120 (209)
T COG2140 49 KEDDFVYELLESEPG--ER-GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQK 120 (209)
T ss_pred CCCceEEEeeccccc--cc-CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEc
Confidence 567787776644322 22 668888777788775 56678899999999999999999 999999999999999
Q ss_pred CCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCceeeccccccCCCCCCHHHHHhhcCCCHHHHHHh
Q 042644 110 TNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVVSISDAAFSDFDTIDDLVRKFIPFLCWTIRVS 188 (205)
Q Consensus 110 ~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~~~~~~~f~~~~~~~evLa~af~v~~~~v~~l 188 (205)
++|+.....+++||+++||++..|+..|+|++|++++.++....+....+....+ +.+..+++..++.+....+..
T Consensus 121 ~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~D~p 196 (209)
T COG2140 121 PEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLG---GMPPVLVENGLNKNPKYVDVP 196 (209)
T ss_pred CCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhc---cCCceeeccccccCcccccCc
Confidence 8898889999999999999999999999999999999999888777766655444 456777777777776555443
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.50 E-value=9.7e-14 Score=94.46 Aligned_cols=70 Identities=30% Similarity=0.441 Sum_probs=63.5
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
+++++||+..++|+|+...|++||++|++.+.+ +++ ...+++||.+++|+|..|...|.++++++++.++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 578999999999999877799999999999884 455 7999999999999999999999999999998875
No 9
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=2.6e-12 Score=98.22 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=72.3
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
+...++.++.+.||+...+|.|.+..|++||++|++.+.+ +++ ...|++||+++||+|..|.+.|.|..++.++.
T Consensus 33 ~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~lie 107 (127)
T COG0662 33 GDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIE 107 (127)
T ss_pred CCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEE
Confidence 3478999999999999888888888999999999999987 344 79999999999999999999999999999998
Q ss_pred EEeCCC
Q 042644 148 VLNSQN 153 (205)
Q Consensus 148 ~~~s~~ 153 (205)
+-....
T Consensus 108 i~~p~~ 113 (127)
T COG0662 108 VQSPPY 113 (127)
T ss_pred EecCCc
Confidence 765444
No 10
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.43 E-value=2e-12 Score=98.93 Aligned_cols=84 Identities=25% Similarity=0.337 Sum_probs=72.0
Q ss_pred CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644 63 FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF 142 (205)
Q Consensus 63 ~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~ 142 (205)
++...+..+++.++.++||+..+.|+||...+.+||++|++++++. ++ .+.+++||++++|+|..|+..|.++.+
T Consensus 35 ~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~~ 109 (131)
T COG1917 35 LPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDEP 109 (131)
T ss_pred ccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCCc
Confidence 3444566789999999999999999998667999999999999974 33 799999999999999999999999887
Q ss_pred EEEEEEEeC
Q 042644 143 ATVFSVLNS 151 (205)
Q Consensus 143 a~~l~~~~s 151 (205)
...++++..
T Consensus 110 ~~~l~v~~~ 118 (131)
T COG1917 110 MVLLLVFPL 118 (131)
T ss_pred eeEEEEeee
Confidence 666666654
No 11
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.42 E-value=6.1e-12 Score=102.56 Aligned_cols=98 Identities=20% Similarity=0.190 Sum_probs=81.0
Q ss_pred eEEEeccCCCCCCCccceEEEEEEEcCCcc------cCCccCCCC--CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEE
Q 042644 54 SLTLVTAADFPGLNTLGLSVARTDLDVDGM------VVPHTHPRA--SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVC 125 (205)
Q Consensus 54 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg~------~~pH~Hp~a--~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~ 125 (205)
-+..+.. ..|.+...++.+....+.||.. .+.|+|+.. .|++||++|++.+.+.+.++......+++||++
T Consensus 52 ~~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v 130 (191)
T PRK04190 52 VVYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVV 130 (191)
T ss_pred eEEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEE
Confidence 3444443 3455666689999999999996 567999855 499999999999988766555567899999999
Q ss_pred EeCCCCeeEEEecCCccEEEEEEEeCC
Q 042644 126 VFPRGLLHFGFNVGYEFATVFSVLNSQ 152 (205)
Q Consensus 126 ~vP~G~~H~~~N~g~~~a~~l~~~~s~ 152 (205)
+||+|..|.+.|.|++++++++++...
T Consensus 131 ~IPpg~~H~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 131 YVPPYWAHRSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EECCCCcEEeEECCCCCEEEEEEEcCC
Confidence 999999999999999999999988543
No 12
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.38 E-value=7.8e-12 Score=95.51 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=69.8
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.++++.+++++||+..+.|+|.. .|+.||++|++++..++ +++ ++.|++||++++|++..|++.|. ++++++++
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~-~g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~v 106 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLA-TGE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVCV 106 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcC-CCE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEEE
Confidence 46899999999999999999955 69999999999988321 244 79999999999999999999997 89999999
Q ss_pred EeCCCCce
Q 042644 149 LNSQNPGV 156 (205)
Q Consensus 149 ~~s~~pg~ 156 (205)
++...+|.
T Consensus 107 ~tP~~~~~ 114 (125)
T PRK13290 107 FNPPLTGR 114 (125)
T ss_pred ECCCCCCc
Confidence 87655553
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.24 E-value=7.4e-11 Score=92.10 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=69.3
Q ss_pred CCCccceEEEEEEEcCCcc-cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC--CeeEEEecCCc
Q 042644 65 GLNTLGLSVARTDLDVDGM-VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG--LLHFGFNVGYE 141 (205)
Q Consensus 65 ~l~~~gis~~~~~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G--~~H~~~N~g~~ 141 (205)
+|. .+.+....++||+. ...|||....|++|||+|++++.+ ++. ...|++||++-||+| ..|.+.|.|+.
T Consensus 38 Gl~--~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~--e~~lrpGD~~gFpAG~~~aHhliN~s~~ 110 (161)
T COG3837 38 GLK--RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGG--ETRLRPGDSAGFPAGVGNAHHLINRSDV 110 (161)
T ss_pred Chh--hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE---CCe--eEEecCCceeeccCCCcceeEEeecCCc
Confidence 555 45666777999995 588999999999999999999876 333 689999999999999 99999999999
Q ss_pred cEEEEEEEeCCC
Q 042644 142 FATVFSVLNSQN 153 (205)
Q Consensus 142 ~a~~l~~~~s~~ 153 (205)
.++.|.+-+...
T Consensus 111 ~~~yL~vG~r~~ 122 (161)
T COG3837 111 ILRYLEVGTREP 122 (161)
T ss_pred eEEEEEeccccc
Confidence 999998765443
No 14
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1.8e-10 Score=86.03 Aligned_cols=85 Identities=15% Similarity=0.232 Sum_probs=74.7
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
.++.+..++++||+-.-.|.|-+....+||++|+.++++. +++ +..++++||+++||+|++|.-.|.+++++.++.
T Consensus 44 s~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vI 120 (142)
T COG4101 44 SGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVI 120 (142)
T ss_pred ceeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEE
Confidence 3788999999999999999998888889999999999983 453 467899999999999999999999999999998
Q ss_pred EEeCCCCce
Q 042644 148 VLNSQNPGV 156 (205)
Q Consensus 148 ~~~s~~pg~ 156 (205)
+.+..++..
T Consensus 121 aRsDp~~~E 129 (142)
T COG4101 121 ARSDPNPQE 129 (142)
T ss_pred EccCCCCCc
Confidence 888766653
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.18 E-value=4e-10 Score=103.46 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=71.3
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
+.++.+.+++++||+..++|+|+...|.+||++|++++.+ +++ +..|++||.+++|+|..|.+.|.|+++++++.
T Consensus 373 ~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~---dg~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~ 447 (468)
T TIGR01479 373 GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI---GDE--TLLLTENESTYIPLGVIHRLENPGKIPLELIE 447 (468)
T ss_pred CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 3368999999999998899999888999999999999987 455 78999999999999999999999999999999
Q ss_pred EEeC
Q 042644 148 VLNS 151 (205)
Q Consensus 148 ~~~s 151 (205)
+...
T Consensus 448 v~~~ 451 (468)
T TIGR01479 448 VQSG 451 (468)
T ss_pred EEcC
Confidence 8753
No 16
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.13 E-value=1.1e-09 Score=86.18 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=74.8
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL 131 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~ 131 (205)
.|+.+.+.. +.++.+-++.+.||..+..|.|....|.++|++|++.+.+ +++ ...+++||.+.||+|.
T Consensus 51 WG~~~~l~~-------~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~~--~~~~~~g~sv~Ip~g~ 118 (151)
T PF01050_consen 51 WGSYEVLDE-------GEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DDE--EFTLKEGDSVYIPRGA 118 (151)
T ss_pred CcEEEEEEc-------cCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CCE--EEEEcCCCEEEECCCC
Confidence 446665553 3478899999999999999999989999999999999987 455 7899999999999999
Q ss_pred eeEEEecCCccEEEEEEE
Q 042644 132 LHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 132 ~H~~~N~g~~~a~~l~~~ 149 (205)
.|.+.|.|+.++.++-+-
T Consensus 119 ~H~i~n~g~~~L~~IEVq 136 (151)
T PF01050_consen 119 KHRIENPGKTPLEIIEVQ 136 (151)
T ss_pred EEEEECCCCcCcEEEEEe
Confidence 999999999999998764
No 17
>PRK11171 hypothetical protein; Provisional
Probab=99.13 E-value=1.4e-09 Score=93.11 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=68.3
Q ss_pred ccceEEEEEEEcCCcccCCccCC-CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHP-RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
...+.+.+++++||+....|+|+ ...|++||++|++++.+ +++ +..|++||.+++|++..|.+.|.|+++++++
T Consensus 58 ~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l 132 (266)
T PRK11171 58 GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGK--THALSEGGYAYLPPGSDWTLRNAGAEDARFH 132 (266)
T ss_pred CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEE
Confidence 45789999999999987777775 55799999999999986 455 7999999999999999999999999999998
Q ss_pred EEEe
Q 042644 147 SVLN 150 (205)
Q Consensus 147 ~~~~ 150 (205)
++..
T Consensus 133 ~v~~ 136 (266)
T PRK11171 133 WIRK 136 (266)
T ss_pred EEEc
Confidence 8764
No 18
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.12 E-value=7.4e-10 Score=101.77 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=69.7
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
+.++.+.+++++||+....|+|....|.+||++|++++.+ +++ ++.|++||.+.+|+|.+|.+.|.|++++++|.
T Consensus 382 g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~i---dg~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~ 456 (478)
T PRK15460 382 GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTI---DGD--IKLLGENESIYIPLGATHCLENPGKIPLDLIE 456 (478)
T ss_pred CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEE---CCE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEE
Confidence 4468999999999998777777777899999999999987 455 79999999999999999999999999999998
Q ss_pred EEe
Q 042644 148 VLN 150 (205)
Q Consensus 148 ~~~ 150 (205)
+..
T Consensus 457 V~~ 459 (478)
T PRK15460 457 VRS 459 (478)
T ss_pred EEc
Confidence 864
No 19
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.10 E-value=1.5e-09 Score=87.82 Aligned_cols=76 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred cceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 69 LGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
..+.+....++||+.. ..|+| ...|++||++|++.+.+ +++ .+.|++||.+++|++.+|.+.|.+++++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h-~~~E~~~Vl~G~~~~~~---~~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKH-QGEEIGTVLEGEIVLTI---NGQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCccccccc-CCcEEEEEEEeEEEEEE---CCE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 3466777789999865 46677 56899999999999987 344 78999999999999999999999999999888
Q ss_pred EEe
Q 042644 148 VLN 150 (205)
Q Consensus 148 ~~~ 150 (205)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 754
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.06 E-value=1.8e-09 Score=92.08 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=65.2
Q ss_pred ceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 70 gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
++.+.+++++||+..+. |.| ...|.+||++|++.+.. +++ +..+++||++++|++.+||++|.|++++++|.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H-~~eh~~yiL~G~G~~~~---~g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETH-VMEHGLYVLEGKGVYNL---DNN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCcccc-cceeEEEEEeceEEEEE---CCE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 67888899999999985 666 56688899999999875 455 799999999999999999999999999998865
Q ss_pred Ee
Q 042644 149 LN 150 (205)
Q Consensus 149 ~~ 150 (205)
-+
T Consensus 252 kd 253 (260)
T TIGR03214 252 KD 253 (260)
T ss_pred cc
Confidence 44
No 21
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.98 E-value=9.6e-09 Score=87.65 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=66.3
Q ss_pred cceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 69 LGLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
..+.+..++++||+-. .+|+|+...|++||++|++.+.+ +++ .+.|++||.+++|+|..|.+.|.++++++++.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGE--THELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 4689999999998754 56667666899999999999886 354 68999999999999999999999999999988
Q ss_pred EEe
Q 042644 148 VLN 150 (205)
Q Consensus 148 ~~~ 150 (205)
+..
T Consensus 131 v~k 133 (260)
T TIGR03214 131 YKK 133 (260)
T ss_pred EEe
Confidence 764
No 22
>PRK11171 hypothetical protein; Provisional
Probab=98.95 E-value=7.9e-09 Score=88.44 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=66.4
Q ss_pred ceEEEEEEEcCCcccCCc-cCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPH-THPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH-~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.+.+..++|+||+..+.| +| ...|.+||++|++++.+ +++ ++.|++||++.+|++..|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~-~~ee~i~Vl~G~~~~~~---~~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETH-VMEHGLYVLEGKGVYRL---NND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCC-CceEEEEEEeCEEEEEE---CCE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 478999999999998885 56 67899999999999876 455 799999999999999999999999999998876
Q ss_pred Ee
Q 042644 149 LN 150 (205)
Q Consensus 149 ~~ 150 (205)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 55
No 23
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.86 E-value=4.3e-08 Score=79.29 Aligned_cols=86 Identities=23% Similarity=0.236 Sum_probs=58.1
Q ss_pred CCccceEEEEEEEcCCcc------cCCccCCC------CCeEEEEEecEEEEEEEeCCC----eEEEEEEcCCCEEEeCC
Q 042644 66 LNTLGLSVARTDLDVDGM------VVPHTHPR------ASEMLFVFKGVVIAGFVDTNR----QVFQVMLKAGEVCVFPR 129 (205)
Q Consensus 66 l~~~gis~~~~~l~pgg~------~~pH~Hp~------a~Ei~yVl~G~~~v~~~~~~~----~~~~~~l~~GDv~~vP~ 129 (205)
|...++......+.||-+ ..-|+|+. ..|+.+|++|++.+.+-+.++ +.+...+++||+++||+
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp 124 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPP 124 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-T
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECC
Confidence 344467888888888763 35699998 789999999999999988877 67788999999999999
Q ss_pred CCeeEEEecCCccEEEEEEEeC
Q 042644 130 GLLHFGFNVGYEFATVFSVLNS 151 (205)
Q Consensus 130 G~~H~~~N~g~~~a~~l~~~~s 151 (205)
+..|...|+|++++++.+...+
T Consensus 125 ~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 125 GYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp T-EEEEEE-SSS-EEEEEEEET
T ss_pred CceEEEEECCCCcEEEEEEEec
Confidence 9999999999999998887754
No 24
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.84 E-value=4.6e-08 Score=75.93 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=56.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC----CeEEEEEEcCCCEEEeCCCCeeEEEecC-CccEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN----RQVFQVMLKAGEVCVFPRGLLHFGFNVG-YEFAT 144 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~----~~~~~~~l~~GDv~~vP~G~~H~~~N~g-~~~a~ 144 (205)
.+.+.+-++.||.-.|+|.| ...|+++|++|+++..+..+. |+..++.+.+++.+.||.+..|...|.+ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 57899999999999999999 789999999999999887653 5667899999999999999999999999 48898
Q ss_pred EEEEEeCCCCcee
Q 042644 145 VFSVLNSQNPGVV 157 (205)
Q Consensus 145 ~l~~~~s~~pg~~ 157 (205)
++++++. -|-..
T Consensus 122 vlViiSr-pPvkv 133 (167)
T PF02041_consen 122 VLVIISR-PPVKV 133 (167)
T ss_dssp EEEEEES-SS--E
T ss_pred EEEEecC-CCeEE
Confidence 8887754 44433
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.63 E-value=3e-07 Score=72.72 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=49.0
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG 139 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g 139 (205)
.||.....|.|+ ..|++|+++|++.+.+.+ +++.....|++||++++|+|+.|.....+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP~gvpHsP~r~~ 94 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLPPHVPHSPQRPA 94 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeCCCCCcccccCC
Confidence 455556788885 799999999999999876 35555799999999999999999997643
No 26
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.62 E-value=2.5e-07 Score=74.28 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=54.9
Q ss_pred EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
+.=.||.....|+|+ ..|++|+++|++.+.+.+ +++.....|++||++++|+|+.|..+.. +..+.+.+
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 334677788889995 699999999999999987 4554578999999999999999999763 34444433
No 27
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.56 E-value=9e-07 Score=63.14 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=55.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
.++...++|+|++.-++-.--+..-++||++|.+++.+. +. ++.+.+||.+.||+|-.-.+.|.++++|+++-
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF 83 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF 83 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence 578889999999987664443778899999999999983 33 78999999999999999999999999998764
No 28
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.55 E-value=4.9e-07 Score=67.29 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=45.8
Q ss_pred CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
++-..++|+| +.-|+.||++|++.+.+ +++ .+.+++||++++|+|..|.....++++...+.+
T Consensus 12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~---~~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i 74 (136)
T PF02311_consen 12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI---DGQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWI 74 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE---TTE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEE
T ss_pred CCCccCCEEC-CCEEEEEEeCCEEEEEE---CCE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEE
Confidence 4456789999 57899999999999876 455 799999999999999999998877666665554
No 29
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.54 E-value=7.4e-07 Score=70.61 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=50.0
Q ss_pred ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644 83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN 150 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~ 150 (205)
+...|.| ...|+-|+++|++.+.+...+++..+..+++||++++|+|..||+.-..+..++++=.|.
T Consensus 84 f~~EH~H-~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~ 150 (157)
T PF03079_consen 84 FFEEHTH-EDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFK 150 (157)
T ss_dssp HCS-EEE-SS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEES
T ss_pred hheeEec-ChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeec
Confidence 4478999 568999999999999999877776678999999999999999999755455666665553
No 30
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.44 E-value=2.8e-06 Score=70.76 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=53.5
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
+..|++..+.++.. ..+||.+..|+.||++|++++.+ +++ .+.+++||++++|+|..|.+.+.+ .++++.
T Consensus 154 ~s~m~aGf~~~~~~---sf~wtl~~dEi~YVLEGe~~l~I---dG~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 154 GSSMAAGFMQWENA---FFPWTLNYDEIDMVLEGELHVRH---EGE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred CCceeeEEEEEecC---ccceeccceEEEEEEEeEEEEEE---CCE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEE
Confidence 33566666666652 23477788999999999999987 455 799999999999999995554443 555555
Q ss_pred EE
Q 042644 148 VL 149 (205)
Q Consensus 148 ~~ 149 (205)
+.
T Consensus 224 V~ 225 (233)
T PRK15457 224 VA 225 (233)
T ss_pred EE
Confidence 44
No 31
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.43 E-value=2.2e-06 Score=68.04 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=58.2
Q ss_pred CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCcee
Q 042644 85 VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157 (205)
Q Consensus 85 ~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~ 157 (205)
.-|.| ...|+-|++.|++.+.+..++++.+...+.+||++.+|+|.-||+.-..+...+++=.|+ ..+|.+
T Consensus 89 ~EH~H-~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV 159 (181)
T COG1791 89 QEHLH-TDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV 159 (181)
T ss_pred HHhcc-CCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence 56999 678999999999999999988899999999999999999999999754455555555553 445554
No 32
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.40 E-value=6.3e-07 Score=64.38 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=58.1
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL 131 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~ 131 (205)
|.++..+.... ...+..+..+.++||+..|.|.|+ ..|.+|||+|++.. .+ ..+.+||.+..|+|.
T Consensus 9 Gv~~~~L~~~~----~~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~~-----~~~~~G~~~~~p~g~ 74 (91)
T PF12973_consen 9 GVSVKPLHRDE----GETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----GD-----GRYGAGDWLRLPPGS 74 (91)
T ss_dssp TEEEEEEEECS----SSTTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----TT-----CEEETTEEEEE-TTE
T ss_pred CEEEEEeccCC----CcccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----CC-----ccCCCCeEEEeCCCC
Confidence 65666655322 123678889999999999999994 57888999999973 12 356999999999999
Q ss_pred eeEEEecCCccEEEEE
Q 042644 132 LHFGFNVGYEFATVFS 147 (205)
Q Consensus 132 ~H~~~N~g~~~a~~l~ 147 (205)
.|.... ++.+.++.
T Consensus 75 ~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 75 SHTPRS--DEGCLILV 88 (91)
T ss_dssp EEEEEE--SSCEEEEE
T ss_pred ccccCc--CCCEEEEE
Confidence 999984 55566554
No 33
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.38 E-value=1.2e-06 Score=72.72 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=63.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
+..+..+.++||+.+|.|.| ...|+.+|++|+.. ++ ...+.+||++..|.|..|...+.+++++.++++.
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f~----de-----~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~ 195 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAFS----DE-----TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVL 195 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEEE----cC-----CCccCCCeEEECCCCCCcCcccCCCCCeEEEEEe
Confidence 35778889999999999999 67899999999963 32 3578999999999999999999988999999988
Q ss_pred eCCC
Q 042644 150 NSQN 153 (205)
Q Consensus 150 ~s~~ 153 (205)
+...
T Consensus 196 dapl 199 (215)
T TIGR02451 196 DAPL 199 (215)
T ss_pred cCCc
Confidence 7543
No 34
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.36 E-value=2e-06 Score=74.74 Aligned_cols=63 Identities=21% Similarity=0.132 Sum_probs=51.8
Q ss_pred EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
.++...-.|..+.++||| +.-|+.|+++|++.+.+ +++ ...+++||++++++|.+|.+...++
T Consensus 27 ~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i---~g~--~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 27 RLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLI---NNE--KVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred eeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEE---CCE--EEEEcCCcEEEEecCCcccccccCC
Confidence 344455677788999999 67899999999998776 455 7899999999999999998765443
No 35
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.32 E-value=1.7e-06 Score=76.31 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=65.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
.|.+..-.|.||...++|.| .+.-+.+|++|++....++ ++ ....++||+|++|.+.+|...|.|++++.++.++
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 45566667999999999999 6778999999999655554 55 7899999999999999999999999998887776
Q ss_pred eC
Q 042644 150 NS 151 (205)
Q Consensus 150 ~s 151 (205)
|.
T Consensus 155 D~ 156 (335)
T TIGR02272 155 DI 156 (335)
T ss_pred CH
Confidence 63
No 36
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.27 E-value=2.9e-06 Score=65.11 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=54.5
Q ss_pred Ccc-cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 81 DGM-VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 81 gg~-~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
|++ .-.|||.++.|++.|++|++.+.+..++|+ ...+++||++++|+|+-|.-. ..+.+..++..+
T Consensus 52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~rl-~sS~DF~VvGaY 118 (163)
T COG4297 52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCRL-HSSADFQVVGAY 118 (163)
T ss_pred ccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCcccccc-cCCCCeEEEccc
Confidence 443 356999999999999999999999888887 789999999999999999873 455666666554
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.24 E-value=1.7e-05 Score=60.03 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=72.9
Q ss_pred CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
.+.|+|+..-.+.+|.....||- +.-|-+|+++|++++...+ +|+ .+.+++|.+++..+.-.|+.+.. ++++++
T Consensus 31 DgmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~-~G~--~~~i~pGt~YaLd~hD~H~lra~--~dm~~v 104 (126)
T PF06339_consen 31 DGMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLD-TGE--VHPIKPGTMYALDKHDRHYLRAK--TDMRLV 104 (126)
T ss_pred CCCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEcc-CCc--EEEcCCCeEEecCCCccEEEEec--CCEEEE
Confidence 46799999999999999999988 7899999999999998765 465 79999999999999999999864 389999
Q ss_pred EEEeCCCCc
Q 042644 147 SVLNSQNPG 155 (205)
Q Consensus 147 ~~~~s~~pg 155 (205)
++||.+--|
T Consensus 105 CVFnPpltG 113 (126)
T PF06339_consen 105 CVFNPPLTG 113 (126)
T ss_pred EEcCCCCcC
Confidence 999876544
No 38
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.22 E-value=1.2e-05 Score=68.51 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=44.3
Q ss_pred CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644 81 DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV 138 (205)
Q Consensus 81 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~ 138 (205)
+...++||| +..|++||++|++.+.+ +++ ...+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NGK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CCE--EEEECCCcEEEeCCCCccceeee
Confidence 345689999 78899999999999876 455 68999999999999999976544
No 39
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.19 E-value=3.9e-05 Score=59.00 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=54.1
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEE-EcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCC-CEEEeCC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTD-LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAG-EVCVFPR 129 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~-l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~G-Dv~~vP~ 129 (205)
.|.++.+...+...+. --.+..+. .++|.....|+|....|+++|++|+..+.+.+. .+..++.|..- ..+.+|+
T Consensus 15 RG~L~~~e~~~~ipf~--i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~-~~~~~~~L~~~~~~L~Ipp 91 (131)
T PF05523_consen 15 RGSLSVIERFDDIPFE--IKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG-REEEEFILDEPNKGLYIPP 91 (131)
T ss_dssp TEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-S-S-EEEEEE--TTEEEEE-T
T ss_pred CCcEEEEeccCCCCCC--ccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecC-CCcEEEEECCCCeEEEECC
Confidence 4577777765432222 12344443 445556999999999999999999999997663 33357777655 4899999
Q ss_pred CCeeEEEecCCccEEEEEEEeC
Q 042644 130 GLLHFGFNVGYEFATVFSVLNS 151 (205)
Q Consensus 130 G~~H~~~N~g~~~a~~l~~~~s 151 (205)
|.+|.+.|.+.. +++++ +.+
T Consensus 92 g~w~~~~~~s~~-svlLv-~as 111 (131)
T PF05523_consen 92 GVWHGIKNFSED-SVLLV-LAS 111 (131)
T ss_dssp T-EEEEE---TT--EEEE-EES
T ss_pred chhhHhhccCCC-cEEEE-EcC
Confidence 999999999766 66554 444
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.13 E-value=1.4e-05 Score=69.67 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=46.8
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
-|....++||| +..|++||++|++...+ +++ .+.+++||+++||+|..|.+....+
T Consensus 56 ~~~~~~~~H~H-~~~el~~v~~G~g~~~v---~~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 56 YPQDVFAEHTH-DFCELVIVWRGNGLHVL---NDR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCcccc-ceEEEEEEEcCeEEEEE---CCE--EEeecCCeEEEECCCCeecccccCC
Confidence 34445789999 68899999999999876 454 7999999999999999999876444
No 41
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.10 E-value=1.4e-05 Score=68.57 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=46.6
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
.+..-.++||| +..|++||++|++++.+ +++ .+.+++||+++||+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H-~~~ei~~i~~G~~~~~i---~~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTH-QFCEIVIVWRGNGLHVL---NDH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCccccc-cceeEEEEecCceEEEE---CCe--eeeecCCeEEEEcCCCcccccccCC
Confidence 34445679999 68899999999999886 454 7999999999999999999875443
No 42
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.01 E-value=1.1e-05 Score=69.44 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=74.9
Q ss_pred eEEEeccCCCCCCCccc-e----EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644 54 SLTLVTAADFPGLNTLG-L----SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP 128 (205)
Q Consensus 54 ~~~~~~~~~~P~l~~~g-i----s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP 128 (205)
.++.+-..+.|+|++.. + -+..--|-||.+.|.|.| +..-+-+|++|++-..+++ |+ ...+++||+++.|
T Consensus 70 a~RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrH-sqsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP 144 (351)
T COG3435 70 AVRRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRH-NQSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTP 144 (351)
T ss_pred ceeEEEEecCCCCCCcccccHHHHhhhheecCcccCCcccc-cccceEEEEeccceeEeec--Cc--eeeccCCCEEEcc
Confidence 44455556778887663 1 122234789999999999 6678999999999888886 43 5889999999999
Q ss_pred CCCeeEEEecCCccEEEEEEEeCC
Q 042644 129 RGLLHFGFNVGYEFATVFSVLNSQ 152 (205)
Q Consensus 129 ~G~~H~~~N~g~~~a~~l~~~~s~ 152 (205)
++.+|.--|.|++|++++-.++..
T Consensus 145 ~w~wHdHgn~g~eP~iWlDgLDip 168 (351)
T COG3435 145 AWTWHDHGNEGTEPCIWLDGLDIP 168 (351)
T ss_pred CceeccCCCCCCCceEEEcccchH
Confidence 999999999999999998877643
No 43
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.99 E-value=1.2e-05 Score=68.24 Aligned_cols=74 Identities=23% Similarity=0.184 Sum_probs=47.6
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
..|-+..++.+++|-..|||+| ++++-+||++|.+..+ +.+....-|.+|..+..|+|..|.....+++.+.++
T Consensus 33 ~~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 33 KDGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TTS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred cCCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 3478999999999999999999 7899999999987653 334345679999999999999999876665555443
No 44
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.97 E-value=2.7e-05 Score=66.28 Aligned_cols=59 Identities=12% Similarity=0.027 Sum_probs=47.5
Q ss_pred CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644 80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA 143 (205)
Q Consensus 80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a 143 (205)
-+...++|||.+.-|++|+++|++.+.+ +++ ...+++||++++|+|..|.+...++...
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~---~~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~ 90 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQL---DEH--EYSEYAPCFFLTPPSVPHGFVTDLDADG 90 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEE---CCE--EEEecCCeEEEeCCCCccccccCCCcce
Confidence 3456899999546899999999998776 344 6899999999999999999876544333
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.97 E-value=3.9e-05 Score=65.32 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=46.5
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
.|+...++||| +..|++||++|++.+.+ +++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h-~~~~l~~v~~G~~~~~i---~~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTH-EFCELVMVWRGNGLHVL---NER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCcccc-ceEEEEEEecCcEEEEE---CCE--EEeecCCcEEEECCCCcccccccCC
Confidence 44455789999 68899999999999886 455 7999999999999999999865443
No 46
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.88 E-value=6.1e-05 Score=52.17 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=44.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
.++.......||.. ..++. ..|++|||+|++++.. .+++ ..++++||++++|+|..-.+.
T Consensus 6 ~~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~--~~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 6 VFSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITD--EDGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp SEEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEE--TTTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred CEEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEE--CCCC--EEEEcCCcEEEECCCCEEEEE
Confidence 35666777788663 33344 3899999999999874 3565 699999999999999866554
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.81 E-value=4.7e-05 Score=64.45 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=45.1
Q ss_pred CCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec
Q 042644 80 VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV 138 (205)
Q Consensus 80 pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~ 138 (205)
+....++||| +..|++||++|.+++.+. ++ ...+++||++++|+|..|.+...
T Consensus 24 ~~~~~~~H~H-~~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~ 76 (278)
T PRK13503 24 PQAAFPEHHH-DFHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHT 76 (278)
T ss_pred cccccccccc-CceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhc
Confidence 4456789999 788999999999998873 44 68999999999999999987654
No 48
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.78 E-value=5.1e-05 Score=59.95 Aligned_cols=57 Identities=19% Similarity=0.375 Sum_probs=49.8
Q ss_pred ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
+...|.|. ..||-||++|++.+-+-+.+++..+.-++.||++++|+|.-|.+.-+.+
T Consensus 85 FfEEhlh~-deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 85 FFEEHLHE-DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred HHHHhcCc-hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence 45889995 5799999999999999888888888899999999999999999965443
No 49
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.75 E-value=0.00012 Score=64.76 Aligned_cols=86 Identities=16% Similarity=-0.001 Sum_probs=64.3
Q ss_pred CeeEEEeccCCCCC-CCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCC
Q 042644 52 YSSLTLVTAADFPG-LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRG 130 (205)
Q Consensus 52 g~~~~~~~~~~~P~-l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G 130 (205)
|-.+..+|..+-+. +.+++.. ...|++|....+|.| ....++||++|++++.+ +++ ....++||+|++|.-
T Consensus 232 g~~l~y~NP~TG~~~~pti~~~--~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~~--~~~W~~gD~f~vPsW 303 (335)
T TIGR02272 232 GLKLRYVNPATGGYPMPTIGAF--IQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GDA--VFRFSPKDVFVVPSW 303 (335)
T ss_pred eEEEEEeCCCCCCCcchhHHHH--HhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CCE--EEEecCCCEEEECCC
Confidence 44677777666554 3444433 456888889999999 56799999999999987 344 689999999999999
Q ss_pred CeeEEEecCCccEEEEE
Q 042644 131 LLHFGFNVGYEFATVFS 147 (205)
Q Consensus 131 ~~H~~~N~g~~~a~~l~ 147 (205)
..|...|. +++.++.
T Consensus 304 ~~~~h~a~--~da~Lf~ 318 (335)
T TIGR02272 304 HPVRFEAS--DDAVLFS 318 (335)
T ss_pred CcEecccC--CCeEEEE
Confidence 88877664 4555444
No 50
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.68 E-value=0.00021 Score=56.21 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=47.4
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.+++..++++.. +.-|.-.-.|+.||++|++.+.. +|+ ....++||+++||+|.--.+... ..++++.+
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~---~G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv 144 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISI---DGQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYV 144 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEE---TTE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEE---CCE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEE
Confidence 466666667663 34577778999999999998763 466 78999999999999988777433 33554443
No 51
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.64 E-value=0.00043 Score=57.27 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=64.3
Q ss_pred ceEEEEEEEcCCc-ccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 70 GLSVARTDLDVDG-MVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 70 gis~~~~~l~pgg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.++-..+++.|+| .-.|-.-+++.-.+||++|++.+.+ +|+ +..|++|+..++|+|..|.+.|...+++++..+
T Consensus 60 tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~---~G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~ 134 (264)
T COG3257 60 TFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA---EGK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWI 134 (264)
T ss_pred hhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE---cCe--EEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence 3566778898877 6677777788889999999999987 455 799999999999999999999999999888765
Q ss_pred Ee
Q 042644 149 LN 150 (205)
Q Consensus 149 ~~ 150 (205)
-.
T Consensus 135 rk 136 (264)
T COG3257 135 RK 136 (264)
T ss_pred ee
Confidence 54
No 52
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.53 E-value=0.0013 Score=51.46 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=44.6
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG 139 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g 139 (205)
.++.=.|+...--|.. ...|++|-++|...+.+++ +++.....+++||++..|++++|+-+-..
T Consensus 36 VmvVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e-~g~~kdi~I~EGe~fLLP~~vpHsP~R~~ 99 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVE-DGKFKDIPIREGEMFLLPANVPHSPQRPA 99 (151)
T ss_dssp EEEEESSB--SSEEE--SS-EEEEEEES-EEEEEEE-TTEEEEEEE-TTEEEEE-TT--EEEEE-T
T ss_pred EEEEcCCCCCCccccC-CcceEEEEEeCcEEEEEEe-CCceEEEEeCCCcEEecCCCCCCCCcCCC
Confidence 3455566667777888 4679999999999999888 57767899999999999999999987653
No 53
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.0011 Score=53.25 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=55.2
Q ss_pred CCcccCCccCCCC-CeEEEEEecEEEEEEEeCC------CeEEEEEEcCC--CEEEeCCCCeeEEEecCCccEEEE
Q 042644 80 VDGMVVPHTHPRA-SEMLFVFKGVVIAGFVDTN------RQVFQVMLKAG--EVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 80 pgg~~~pH~Hp~a-~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~G--Dv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
+|-+...|+|..- .+++.|++|++...++|-. ++.....+.+- ..+.||+|.+|.++|.+++..+++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 8889999999888 8999999999998888743 35556677655 799999999999999998874333
No 54
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0012 Score=51.75 Aligned_cols=69 Identities=19% Similarity=0.208 Sum_probs=50.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.+++....+++ ..++ |--+-.|+-||++|++.+.. +|+ ....++||++++|+|.---+.-.|. ++++-+
T Consensus 99 ~l~aG~m~~~~-~tf~--wtl~yDe~d~VlEGrL~V~~---~g~--tv~a~aGDvifiPKgssIefst~ge--a~flyv 167 (176)
T COG4766 99 RLGAGLMEMKN-TTFP--WTLNYDEIDYVLEGRLHVRI---DGR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYV 167 (176)
T ss_pred ccccceeeecc-ccCc--ceecccceeEEEeeeEEEEE---cCC--eEecCCCcEEEecCCCeEEEeccce--EEEEEE
Confidence 45666666766 3333 44567899999999999876 344 5788999999999998877755444 655543
No 55
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=97.29 E-value=0.0062 Score=49.15 Aligned_cols=77 Identities=19% Similarity=0.143 Sum_probs=58.4
Q ss_pred cCCcccCCccCC--CCCeEEEEEecEEEEEEEeCC------CeEEEEEEcC--CCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 79 DVDGMVVPHTHP--RASEMLFVFKGVVIAGFVDTN------RQVFQVMLKA--GEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 79 ~pgg~~~pH~Hp--~a~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~--GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
.+|.+..+|+|. ....+++|++|++...++|-. |+.....|.+ +..++||+|..|.+++.+++ +.++-.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 568889999983 368999999999999888853 5666788877 55999999999999998765 544443
Q ss_pred EeC-CCCce
Q 042644 149 LNS-QNPGV 156 (205)
Q Consensus 149 ~~s-~~pg~ 156 (205)
.+. -+|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 332 24443
No 56
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=97.26 E-value=0.0031 Score=50.86 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=53.1
Q ss_pred cCCcccCCccCCCC---CeEEEEEecEEEEEEEeCC------CeEEEEEEcCCC--EEEeCCCCeeEEEecCCccEEEEE
Q 042644 79 DVDGMVVPHTHPRA---SEMLFVFKGVVIAGFVDTN------RQVFQVMLKAGE--VCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a---~Ei~yVl~G~~~v~~~~~~------~~~~~~~l~~GD--v~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
.+|-+..+|+|... ..++.|++|++...++|-. ++.....|.+++ .++||+|..|.+.+.+++ +.++.
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~-a~v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD-AEVLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-EEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-eEEEE
Confidence 45888999999765 6899999999998888732 677888998876 799999999999999766 43333
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.20 E-value=0.0083 Score=48.23 Aligned_cols=84 Identities=14% Similarity=0.002 Sum_probs=57.6
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeC-CC---e----EEEEEEcCCCEEEeCCCCeeEEEecC-C
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDT-NR---Q----VFQVMLKAGEVCVFPRGLLHFGFNVG-Y 140 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~-~~---~----~~~~~l~~GDv~~vP~G~~H~~~N~g-~ 140 (205)
.+.+..+...||...+.|=|..+.-++.|++|+++-.+... ++ . .....+..|..++++.+.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 57888899999999999999878889999999987655432 22 1 12345678888888999999999886 8
Q ss_pred ccEEEEEEEeCCC
Q 042644 141 EFATVFSVLNSQN 153 (205)
Q Consensus 141 ~~a~~l~~~~s~~ 153 (205)
++++-|=++..+.
T Consensus 154 ~~avSLHvYspPl 166 (175)
T PF05995_consen 154 EPAVSLHVYSPPL 166 (175)
T ss_dssp S-EEEEEEEES--
T ss_pred CCEEEEEEcCCCh
Confidence 8888777776543
No 58
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.96 E-value=0.002 Score=48.48 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=47.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
.+........||.. +++-...|..|+|+|++++.- ++|+ ..++++||++++|+|..=-+.-
T Consensus 44 ~~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~--d~Ge--~v~~~aGD~~~~~~G~~g~W~V 104 (116)
T COG3450 44 QVETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTP--DGGE--PVEVRAGDSFVFPAGFKGTWEV 104 (116)
T ss_pred CeeEeEEEecCccc---eEEcccceEEEEEeeEEEEEC--CCCe--EEEEcCCCEEEECCCCeEEEEE
Confidence 46666777777764 455566899999999998763 2455 7899999999999998776653
No 59
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.56 E-value=0.0088 Score=51.89 Aligned_cols=92 Identities=20% Similarity=0.100 Sum_probs=66.0
Q ss_pred CCCCeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644 49 KFPYSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP 128 (205)
Q Consensus 49 ~~~g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP 128 (205)
+++|..+..+|..+--- .-.-|.+.+--|.||-...+|.|.+ .-++.|.+|++.+.+ +++ ++...+||+|+||
T Consensus 240 p~dG~~~ryvNP~TGg~-~mptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~I---g~~--rf~~~~~D~fvVP 312 (351)
T COG3435 240 PFDGYKMRYVNPVTGGY-AMPTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTII---GGE--RFDWSAGDIFVVP 312 (351)
T ss_pred CCCcceEEEecCCCCCC-cCchHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEE---CCE--EeeccCCCEEEcc
Confidence 45577777777543211 1112333344578888889999965 578889999999877 455 7899999999999
Q ss_pred CCCeeEEEecCCccEEEEEE
Q 042644 129 RGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 129 ~G~~H~~~N~g~~~a~~l~~ 148 (205)
.=..|...|. ++++.++++
T Consensus 313 sW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 313 SWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred CcceeecccC-CcceEEEec
Confidence 9999999874 777766653
No 60
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.31 E-value=0.059 Score=44.41 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred EEEEEEcC-CcccCCccCCCCCeEEEEEecEEEEEEEeCC--------C---------------------------eEEE
Q 042644 73 VARTDLDV-DGMVVPHTHPRASEMLFVFKGVVIAGFVDTN--------R---------------------------QVFQ 116 (205)
Q Consensus 73 ~~~~~l~p-gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~--------~---------------------------~~~~ 116 (205)
...+-+.+ |...++|+.+ ..-++.+++|+=++.+..|+ . +..+
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 33455555 5578999986 56788899999888887653 0 2357
Q ss_pred EEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644 117 VMLKAGEVCVFPRGLLHFGFNVGYEF 142 (205)
Q Consensus 117 ~~l~~GDv~~vP~G~~H~~~N~g~~~ 142 (205)
.+|++||+++||+|.+|..+|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984343
No 61
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.98 E-value=0.051 Score=45.23 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=42.5
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEe-cEEEEEEEeCC----------------CeEE------EEEEcCCCEEEeCCCC
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFK-GVVIAGFVDTN----------------RQVF------QVMLKAGEVCVFPRGL 131 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~-G~~~v~~~~~~----------------~~~~------~~~l~~GDv~~vP~G~ 131 (205)
.+.+.+|...|.|+|..-.|=+..-- |.+.+.+..++ |... ..+|+||+.+.+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 46678999999999999888877775 46666555432 1111 4789999999999999
Q ss_pred eeEEEecCCc
Q 042644 132 LHFGFNVGYE 141 (205)
Q Consensus 132 ~H~~~N~g~~ 141 (205)
.|++...+..
T Consensus 171 yH~Fw~e~g~ 180 (225)
T PF07385_consen 171 YHWFWGEGGD 180 (225)
T ss_dssp EEEEEE-TTS
T ss_pred eeeEEecCCC
Confidence 9999875444
No 62
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.61 E-value=0.046 Score=40.57 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=45.4
Q ss_pred CcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEecCC-ccEEEE
Q 042644 81 DGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNVGY-EFATVF 146 (205)
Q Consensus 81 gg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~g~-~~a~~l 146 (205)
+.-.++|-|.+-.-+.||++|++.-. |+.+. ..+|++||+-++-+ |+.|.-.|.++ +++..+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~l 103 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGL 103 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEE
Confidence 55668999966656669999998653 55555 57899999888865 68999999887 677665
No 63
>PF12852 Cupin_6: Cupin
Probab=95.54 E-value=0.052 Score=43.44 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=35.0
Q ss_pred CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644 93 SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG 139 (205)
Q Consensus 93 ~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g 139 (205)
.-+.+|++|+..+.+-+ ++. ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~-~~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPG-GGE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcC-CCC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 56778999999988532 123 689999999999999999995443
No 64
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.47 E-value=0.12 Score=45.28 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=39.8
Q ss_pred EEEEEEEcCCc--ccCCccCCCCCeEEEEEecEEEEEEEeCC------------------CeEEEEEEcCCCEEEeCCCC
Q 042644 72 SVARTDLDVDG--MVVPHTHPRASEMLFVFKGVVIAGFVDTN------------------RQVFQVMLKAGEVCVFPRGL 131 (205)
Q Consensus 72 s~~~~~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~------------------~~~~~~~l~~GDv~~vP~G~ 131 (205)
..+.+.+.|+| -+.|||=. ..-+++=++|+=+..+..+. ......+|++||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34445577777 78888763 23333445776555554421 01347899999999999999
Q ss_pred eeEEEecC
Q 042644 132 LHFGFNVG 139 (205)
Q Consensus 132 ~H~~~N~g 139 (205)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999887
No 65
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=95.33 E-value=0.14 Score=46.71 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=36.3
Q ss_pred ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 87 HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 87 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
-++-+..|++++-+|++++.-. =| ...+++||+++||+|+.+.+.-. ++++.++
T Consensus 141 f~NaDGD~Li~~q~G~l~l~Te--~G---~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi 194 (424)
T PF04209_consen 141 FRNADGDELIFPQQGSLRLETE--FG---RLDVRPGDYVVIPRGTRFRVELP--GPARGYI 194 (424)
T ss_dssp EEESSEEEEEEEEES-EEEEET--TE---EEEE-TTEEEEE-TT--EEEE-S--SSEEEEE
T ss_pred eEcCCCCEEEEEEECCEEEEec--Ce---eEEEcCCeEEEECCeeEEEEEeC--CCceEEE
Confidence 3456889999999999987532 24 46799999999999999998755 5555444
No 66
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=95.28 E-value=0.085 Score=44.97 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 91 RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 91 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
+.-++.++++|++.+.. +++ .+.+++||++++|+|.+|......+
T Consensus 48 ~~~~i~~~~~G~~~~~~---~~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 48 KGYILNLTIRGQGVIFN---GGR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred cceEEEEEEeccEEEec---CCe--eEecCCCCEEEECCCCceeeccCCC
Confidence 45688999999999764 344 6899999999999999998765443
No 67
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.25 E-value=0.067 Score=38.73 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=35.5
Q ss_pred EEEcCCcccCCccCCCCC--eEEEEE--ecEEEEEEEeCC------------------CeEEEEEEcCCCEEEeCCCCee
Q 042644 76 TDLDVDGMVVPHTHPRAS--EMLFVF--KGVVIAGFVDTN------------------RQVFQVMLKAGEVCVFPRGLLH 133 (205)
Q Consensus 76 ~~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~~~~~------------------~~~~~~~l~~GDv~~vP~G~~H 133 (205)
...++|+...+|.|+++. -++||- ++...+.+.+++ ........++||++++|.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 346789999999998863 233443 233334444432 1234678899999999999999
Q ss_pred EEEecCCccEEEEEEE
Q 042644 134 FGFNVGYEFATVFSVL 149 (205)
Q Consensus 134 ~~~N~g~~~a~~l~~~ 149 (205)
...-..++.-++-.+|
T Consensus 85 ~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 85 GVPPNNSDEERISISF 100 (101)
T ss_dssp EE----SSS-EEEEEE
T ss_pred eccCcCCCCCEEEEEc
Confidence 9854333333333334
No 68
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.22 E-value=0.19 Score=45.97 Aligned_cols=58 Identities=14% Similarity=0.053 Sum_probs=43.6
Q ss_pred cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
...-.+-+..|++++-+|++.+.-.. | ...+++||+++||+|+.+.+. ..+++++.++
T Consensus 146 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyi 203 (438)
T PRK05341 146 DRYFYNADGELLIVPQQGRLRLATEL--G---VLDVEPGEIAVIPRGVKFRVE-LPDGPARGYV 203 (438)
T ss_pred cceeecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEEcCccEEEEe-cCCCCeeEEE
Confidence 34445668899999999999876433 4 478999999999999998886 3345555544
No 69
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.15 E-value=0.37 Score=43.99 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=42.0
Q ss_pred ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 87 HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 87 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
-.+-+..+++++-+|++.+.-.. | ...+++||+++||+|+.+.+. ..+++++.++
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~-l~~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTEL--G---KLQVSPGEIVVIPRGFRFAVD-LPDGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEec--c---ceEecCCCEEEecCccEEEEe-cCCCCeeEEE
Confidence 45668999999999999876433 4 478899999999999998885 3234555443
No 70
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.88 E-value=0.17 Score=43.48 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=46.6
Q ss_pred CCcccCCccC-CCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcC-CCEEEeCCCCeeEEEec
Q 042644 80 VDGMVVPHTH-PRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKA-GEVCVFPRGLLHFGFNV 138 (205)
Q Consensus 80 pgg~~~pH~H-p~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~-GDv~~vP~G~~H~~~N~ 138 (205)
|+++..+|.| +.-.|.+.|++|++.+...++++. .....+.+ ++.-++|++.+|...-.
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~ 81 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAA 81 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEc
Confidence 6788899999 567799999999999988877764 33455555 45667999999999865
No 71
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=94.83 E-value=0.28 Score=44.75 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=43.3
Q ss_pred cCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 84 VVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 84 ~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
...-.+-+..+++++-+|++.+.-.. | ...+++||+++||+|+.+.+.-.| +++.++
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TEf--G---~L~v~pgei~VIPRG~~frv~l~g--p~rgyi 196 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTEF--G---RLLVEPNEICVIPRGVRFRVTVLE--PARGYI 196 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEec--c---ceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence 34445668899999999999876533 4 478999999999999999886544 544433
No 72
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.82 E-value=0.11 Score=44.99 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=51.1
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCC--CCeeEEEec--CCccEEEE
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPR--GLLHFGFNV--GYEFATVF 146 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~--G~~H~~~N~--g~~~a~~l 146 (205)
...+.||.-++||-|.+-.-+.||++|+++-. |+.|. ...+++||+-..-+ |..|.-+|. ..+++..+
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn--~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~ 119 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN--KGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGL 119 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc--eeeecccceeEEcCCCceeecccCCccCCCcccee
Confidence 34588999999999977666679999998754 44454 58999999988876 689999886 23355433
No 73
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.66 E-value=0.073 Score=38.71 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=21.7
Q ss_pred EEEEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644 114 VFQVMLKAGEVCVFPRGLLHFGFNVGYE 141 (205)
Q Consensus 114 ~~~~~l~~GDv~~vP~G~~H~~~N~g~~ 141 (205)
.+..+-++||++++|+|..|+..|.|..
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccceECCCCEEEECCCceEEEEeCCce
Confidence 4578889999999999999999999864
No 74
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=94.24 E-value=0.49 Score=39.52 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=56.5
Q ss_pred ccceEEEEEEEcCCcccCC-ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 68 TLGLSVARTDLDVDGMVVP-HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~p-H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
.-.+-+..++++||+..|- -+| --.-=+||++|++...+. +. ...+++||.+..-+-.+.+.+..|....+.+
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtH-vmEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETH-VMEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred CcceEEEEEEecCCcccchhhhh-hhhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 4468889999999997753 344 223457999999987763 22 7899999999999999999988777755555
Q ss_pred E
Q 042644 147 S 147 (205)
Q Consensus 147 ~ 147 (205)
.
T Consensus 253 l 253 (264)
T COG3257 253 L 253 (264)
T ss_pred E
Confidence 4
No 75
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.16 E-value=0.2 Score=41.30 Aligned_cols=78 Identities=22% Similarity=0.160 Sum_probs=46.2
Q ss_pred EEEEEEcCCcccCCccCCCCC--eEEEEE--ecEEEEEEEeCCC------------------eEEEEEEcCCCEEEeCCC
Q 042644 73 VARTDLDVDGMVVPHTHPRAS--EMLFVF--KGVVIAGFVDTNR------------------QVFQVMLKAGEVCVFPRG 130 (205)
Q Consensus 73 ~~~~~l~pgg~~~pH~Hp~a~--Ei~yVl--~G~~~v~~~~~~~------------------~~~~~~l~~GDv~~vP~G 130 (205)
+-...+.+|+....|.||++. -++||- .|.+...+.++.- ......-++||++++|.-
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~ 177 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESW 177 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCC
Confidence 334567889999999999862 344554 2222333333210 011234489999999999
Q ss_pred CeeEEEecCCccEEEEEEEe
Q 042644 131 LLHFGFNVGYEFATVFSVLN 150 (205)
Q Consensus 131 ~~H~~~N~g~~~a~~l~~~~ 150 (205)
+.|...-...+.-++-.+||
T Consensus 178 L~H~v~p~~~~~~RISiSFN 197 (201)
T TIGR02466 178 LRHEVPPNESEEERISVSFN 197 (201)
T ss_pred CceecCCCCCCCCEEEEEEe
Confidence 99998533333334444454
No 76
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=94.07 E-value=0.33 Score=39.85 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=59.9
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
...++++.+.+|..+|-|+| -.-|...|++|.. .+++ .++.+||+..-+.+.-|.-.-..+.++..++++
T Consensus 127 s~~V~llki~~g~s~P~HtH-~G~E~t~vl~G~~----sde~-----G~y~vgD~~~~d~~v~H~piv~~~~eClcl~al 196 (216)
T COG3806 127 SRRVALLKIEPGRSFPDHTH-VGIERTAVLEGAF----SDEN-----GEYLVGDFTLADGTVQHSPIVLPPGECLCLAAL 196 (216)
T ss_pred CceeEEEEeccCcccccccc-cceEEEEEEeecc----ccCC-----CccccCceeecCCccccccccCCCCCceEEEEc
Confidence 57899999999999999999 6789999999875 3333 367899999999999998665667888888877
Q ss_pred eCC
Q 042644 150 NSQ 152 (205)
Q Consensus 150 ~s~ 152 (205)
+-+
T Consensus 197 ~~~ 199 (216)
T COG3806 197 DGP 199 (216)
T ss_pred CCC
Confidence 543
No 77
>PRK10579 hypothetical protein; Provisional
Probab=94.07 E-value=0.95 Score=32.78 Aligned_cols=55 Identities=15% Similarity=-0.020 Sum_probs=42.3
Q ss_pred EEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 77 DLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
.+.||. .+.-..+.|+.-|++|++++.+- +...+..+++|+.|-||.+...-++.
T Consensus 29 Vm~pGe---y~F~T~~~E~MeivsG~l~V~Lp---g~~ew~~~~aG~sF~VpanssF~l~v 83 (94)
T PRK10579 29 VMAEGE---YTFSTAEPEEMTVISGALNVLLP---GATDWQVYEAGEVFNVPGHSEFHLQV 83 (94)
T ss_pred EEeeeE---EEEcCCCcEEEEEEeeEEEEECC---CCcccEEeCCCCEEEECCCCeEEEEE
Confidence 345554 33444578999999999999873 33347999999999999998877765
No 78
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=94.02 E-value=0.27 Score=39.11 Aligned_cols=78 Identities=19% Similarity=0.161 Sum_probs=53.9
Q ss_pred eEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEE--EeCCC----eEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644 71 LSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGF--VDTNR----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT 144 (205)
Q Consensus 71 is~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~--~~~~~----~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~ 144 (205)
+++..+++.||...|+|-| .-.-++=|+.|.-.-.+ .+.++ ....+.+.+|++- .-+|.+|.+.|.|+..-.
T Consensus 73 ltV~~~t~~PG~~~p~HnH-~~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNH-LMWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCccc-chheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 7899999999999999999 77778888888643222 11110 1124577888888 444889999888876544
Q ss_pred EEEEEe
Q 042644 145 VFSVLN 150 (205)
Q Consensus 145 ~l~~~~ 150 (205)
.|-++-
T Consensus 151 aiHvy~ 156 (191)
T COG5553 151 AIHVYL 156 (191)
T ss_pred eEEEEe
Confidence 444443
No 79
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.99 E-value=0.66 Score=33.81 Aligned_cols=69 Identities=19% Similarity=0.162 Sum_probs=43.2
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEe
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLN 150 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~ 150 (205)
..+.++||+......-+...-++||++|++.+. ++ ...+.+|+++++..|..-.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~--~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GE--EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TT--TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CC--cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 457788888542222223357899999998753 22 267999999999977766666553 6677665543
No 80
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=93.96 E-value=0.057 Score=45.96 Aligned_cols=76 Identities=16% Similarity=0.051 Sum_probs=44.7
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
.+....+.++.|---.+|+| ...|-.|||+|++..+.....+ ...|.+|-.+.-|.+..|... .++++++++.-.
T Consensus 170 ~~~gll~kLPagf~g~i~~h-~~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRt 244 (251)
T PF14499_consen 170 QYTGLLLKLPAGFTGRIHTH-ASNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRT 244 (251)
T ss_dssp EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--E-------EESS-EEEEEEE
T ss_pred ceeeEEEEcCCCCcCceecc-CCceEEEEEEeEEEEeecccCC---CccccCCcccccCCccccccc-ccCCCEEEEEEE
Confidence 45666777888878899999 5689999999999985432112 489999999999999999998 678888777655
Q ss_pred e
Q 042644 150 N 150 (205)
Q Consensus 150 ~ 150 (205)
+
T Consensus 245 d 245 (251)
T PF14499_consen 245 D 245 (251)
T ss_dssp S
T ss_pred C
Confidence 4
No 81
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=93.93 E-value=0.31 Score=39.78 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=43.2
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEE-ecEEEEEEEeCC----------------CeEE------EEEEcCCCEEEeCCC
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVF-KGVVIAGFVDTN----------------RQVF------QVMLKAGEVCVFPRG 130 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl-~G~~~v~~~~~~----------------~~~~------~~~l~~GDv~~vP~G 130 (205)
-.+.+.+|.+.|+|.|++-.|=+.=- .|++.+.+...+ +... ..+|+||+.+.+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34567899999999998665543322 223333222111 1111 478999999999999
Q ss_pred CeeEEEecC
Q 042644 131 LLHFGFNVG 139 (205)
Q Consensus 131 ~~H~~~N~g 139 (205)
..|++..-+
T Consensus 169 ~~HsFwae~ 177 (225)
T COG3822 169 LYHSFWAEE 177 (225)
T ss_pred ceeeeeecC
Confidence 999998643
No 82
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=93.90 E-value=1.4 Score=34.14 Aligned_cols=77 Identities=17% Similarity=0.096 Sum_probs=56.3
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEec-EEEEEEEeCCCeEEEEEEcC----CC--EEEeCCCCeeEEEecCCcc
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKG-VVIAGFVDTNRQVFQVMLKA----GE--VCVFPRGLLHFGFNVGYEF 142 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G-~~~v~~~~~~~~~~~~~l~~----GD--v~~vP~G~~H~~~N~g~~~ 142 (205)
..+....-|.++.....|.- ++.|+.+...| .+++.+++++++....+|.. |+ .++||+|.+...+-.+...
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~ 118 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEPEGD 118 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECESSS
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccCCCC
Confidence 46666777888888877776 78999999998 58889999998877777744 43 7899999998886544555
Q ss_pred EEEEE
Q 042644 143 ATVFS 147 (205)
Q Consensus 143 a~~l~ 147 (205)
..+++
T Consensus 119 y~Lvs 123 (139)
T PF06172_consen 119 YSLVS 123 (139)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 83
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=93.86 E-value=1.3 Score=36.59 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=82.0
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE
Q 042644 69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS 147 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~ 147 (205)
++.......+++|..+-..-. ....+++|++|.+.+...+++|+. ....+.+||++-...+..+.....--++..++.
T Consensus 34 ~~~~~~~~~~~kge~l~~~Gd-~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 34 AGLVASEFSYKKGEEIYGEGE-PADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred ccceeeeEEECCCCEEECCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 356677778888886544333 356788999999999988877763 445668999887665544332222234444332
Q ss_pred EEe-------CCCCceeec----------------------------ccccc------C-----CCCCCHHHHHhhcCCC
Q 042644 148 VLN-------SQNPGVVSI----------------------------SDAAF------S-----DFDTIDDLVRKFIPFL 181 (205)
Q Consensus 148 ~~~-------s~~pg~~~~----------------------------~~~~f------~-----~~~~~~evLa~af~v~ 181 (205)
+-- ..+|..... +..+. + ...++.+.||..+|++
T Consensus 113 i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGis 192 (230)
T PRK09391 113 IKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLT 192 (230)
T ss_pred EEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCC
Confidence 211 123322110 00000 0 0146789999999999
Q ss_pred HHHHHHhhhcCCCcccEEEe
Q 042644 182 CWTIRVSEMSHFQDNKLKIM 201 (205)
Q Consensus 182 ~~~v~~l~~~~~~~~~i~i~ 201 (205)
++++.++.+.-.+.|.|.+.
T Consensus 193 retlsR~L~~L~~~GlI~~~ 212 (230)
T PRK09391 193 IETVSRALSQLQDRGLIGLS 212 (230)
T ss_pred HHHHHHHHHHHHHCCcEEec
Confidence 99999988888877777653
No 84
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=93.84 E-value=0.57 Score=33.95 Aligned_cols=69 Identities=13% Similarity=-0.096 Sum_probs=43.5
Q ss_pred EEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 72 SVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 72 s~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
....-.+.||. -+....+.|+.-|++|++.+.+- +...+.++++|+.|.||++.-..++-. ++...++.
T Consensus 24 ~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lp---g~~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 24 KKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLP---GEDEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEET---T-SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred cceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcC---CCcccEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 33334456665 33444578999999999999873 333479999999999999988777653 44444443
No 85
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.66 E-value=0.42 Score=39.38 Aligned_cols=85 Identities=15% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC----------eEEEE------EE-cCCC-EEEe
Q 042644 66 LNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR----------QVFQV------ML-KAGE-VCVF 127 (205)
Q Consensus 66 l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~----------~~~~~------~l-~~GD-v~~v 127 (205)
..+..+++..+.|++|..+|+|=||+-+-+.-|+.|++.+.-.+--. +.... ++ .+++ .+.-
T Consensus 39 yE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~ 118 (200)
T PF07847_consen 39 YEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLY 118 (200)
T ss_pred EECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEc
Confidence 44557899999999999999999999888888999999886544210 11011 12 2334 4455
Q ss_pred CC--CCeeEEEecCCccEEEEEEEeC
Q 042644 128 PR--GLLHFGFNVGYEFATVFSVLNS 151 (205)
Q Consensus 128 P~--G~~H~~~N~g~~~a~~l~~~~s 151 (205)
|. |-+|++.+.+ +++.++-++..
T Consensus 119 P~~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 119 PTSGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred cCCCCeeEEEEeCC-CCeEEEEEccC
Confidence 65 5999999886 88888888764
No 86
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=93.64 E-value=1.1 Score=35.90 Aligned_cols=130 Identities=8% Similarity=0.083 Sum_probs=78.1
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCC----CCeeEEEecCCccEEEEEE
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPR----GLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~----G~~H~~~N~g~~~a~~l~~ 148 (205)
....+++|..+...=. ....+++|++|.+.+...+.+|+ .....+.+||++-... ...+...-...++..++.+
T Consensus 21 ~~~~~~kg~~l~~~g~-~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 21 HIHKYPAKSTLIHAGE-KAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred eEEEeCCCCEEEeCCC-CCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 4567778876543323 35679999999999987776654 4456789999985432 2222221122344444432
Q ss_pred Ee-------CCCCceee-c---------------------------ccccc------C--------CCCCCHHHHHhhcC
Q 042644 149 LN-------SQNPGVVS-I---------------------------SDAAF------S--------DFDTIDDLVRKFIP 179 (205)
Q Consensus 149 ~~-------s~~pg~~~-~---------------------------~~~~f------~--------~~~~~~evLa~af~ 179 (205)
-. ..+|.... + +..+. + .-.++.+.||.-+|
T Consensus 100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG 179 (211)
T PRK11753 100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG 179 (211)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence 11 12333211 0 00010 0 00466799999999
Q ss_pred CCHHHHHHhhhcCCCcccEEEeeec
Q 042644 180 FLCWTIRVSEMSHFQDNKLKIMKHH 204 (205)
Q Consensus 180 v~~~~v~~l~~~~~~~~~i~i~~~~ 204 (205)
++++++.++.+.-.+.+.|.+-+.+
T Consensus 180 ~tr~tvsR~l~~l~~~gii~~~~~~ 204 (211)
T PRK11753 180 CSREMVGRVLKMLEDQGLISAHGKT 204 (211)
T ss_pred CCHHHHHHHHHHHHHCCCEEecCCE
Confidence 9999999999888888877765544
No 87
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.22 E-value=0.77 Score=36.32 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=41.7
Q ss_pred EEEEEEEcCCcccCCccCCCCCeEE--EEEe---cEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 72 SVARTDLDVDGMVVPHTHPRASEML--FVFK---GVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 72 s~~~~~l~pgg~~~pH~Hp~a~Ei~--yVl~---G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
.+....+.||+.+.||.-+....+- +.|. +...+.+ +++ ....++|+++++--...|+..|.|+++=+.+
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v---~~~--~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~L 155 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRV---GGE--TRHWREGECWVFDDSFEHEVWNNGDEDRVVL 155 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEE---TTE--EEB--CTEEEEE-TTS-EEEEESSSS-EEEE
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEE---CCe--EEEeccCcEEEEeCCEEEEEEeCCCCCEEEE
Confidence 4555568999999999886543321 1222 2222222 243 6788999999999999999999998764443
No 88
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.11 E-value=0.47 Score=40.53 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=45.2
Q ss_pred ceEEEEEEEcCCccc-----CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 70 GLSVARTDLDVDGMV-----VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 70 gis~~~~~l~pgg~~-----~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
++.+.++...+..+. ..|.+.+.--++++++|++.+.. +++ ...+++||++++|.+.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~---~g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ---DDR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE---CCe--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456666665554322 23444444456678899998765 455 6899999999999999998765443
No 89
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.077 Score=48.85 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=43.3
Q ss_pred EEEEcC-Cc-ccCCccCCCCCeEEEEEecEEEEEEEeCC-------------------Ce-EEEEEEcCCCEEEeCCCCe
Q 042644 75 RTDLDV-DG-MVVPHTHPRASEMLFVFKGVVIAGFVDTN-------------------RQ-VFQVMLKAGEVCVFPRGLL 132 (205)
Q Consensus 75 ~~~l~p-gg-~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~-------------------~~-~~~~~l~~GDv~~vP~G~~ 132 (205)
.+.|.| |+ -++|||- +-.-++.=++|+=+..+..|. |+ ++...|++||+++||+|.+
T Consensus 320 NvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~I 398 (629)
T KOG3706|consen 320 NVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTI 398 (629)
T ss_pred ceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcce
Confidence 344444 44 5799998 444455567898766665543 11 3468999999999999999
Q ss_pred eEEEe
Q 042644 133 HFGFN 137 (205)
Q Consensus 133 H~~~N 137 (205)
|....
T Consensus 399 HQA~t 403 (629)
T KOG3706|consen 399 HQADT 403 (629)
T ss_pred eeccc
Confidence 98854
No 90
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.65 E-value=1.9 Score=38.47 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=50.0
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
.|+++....+..+-.-..-+.-+..|++|+-+|++++.-.. | ..++++||..+||+|+.....-...+ +..+
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~--G---~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL--G---VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee--c---eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 45555544444443335556667789999999999876433 3 58999999999999999888754333 4433
No 91
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=91.80 E-value=1.3 Score=38.24 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=50.5
Q ss_pred ceEEEEEEEcCCc---ccCCccCCCCCeEEEEE---ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644 70 GLSVARTDLDVDG---MVVPHTHPRASEMLFVF---KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA 143 (205)
Q Consensus 70 gis~~~~~l~pgg---~~~pH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a 143 (205)
.+-+....+.||+ ..|||.|.+..|..+-. ++...+.+..+-++.....++-+|++++|+=.+|+- .|...-
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g--~gt~~y 251 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSG--VGTSNY 251 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecC--cCcccc
Confidence 4666667789998 35999998777755422 222222221111232247899999999999999987 466666
Q ss_pred EEEEEE
Q 042644 144 TVFSVL 149 (205)
Q Consensus 144 ~~l~~~ 149 (205)
.||..-
T Consensus 252 ~fiw~m 257 (276)
T PRK00924 252 TFIWGM 257 (276)
T ss_pred EEEEEe
Confidence 666544
No 92
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=91.40 E-value=4.3 Score=34.77 Aligned_cols=95 Identities=20% Similarity=0.338 Sum_probs=48.8
Q ss_pred eEEEeccCCCCCCCccceEEEEEEEcCCc---ccCCccCCCC--------CeEEEEE----ecEEEEEEEeCCC-eEEEE
Q 042644 54 SLTLVTAADFPGLNTLGLSVARTDLDVDG---MVVPHTHPRA--------SEMLFVF----KGVVIAGFVDTNR-QVFQV 117 (205)
Q Consensus 54 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg---~~~pH~Hp~a--------~Ei~yVl----~G~~~v~~~~~~~-~~~~~ 117 (205)
.+......+.+. ...+-+..+. .|+| ..|||.|.+. .|+.|-. +|-+.-.+.+++. .....
T Consensus 136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~ 212 (261)
T PF04962_consen 136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY 212 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence 344444444442 2245566555 5555 4599999662 5666653 3544433333222 23468
Q ss_pred EEcCCCEEEeCCCCeeEEEe-cCCccEEEEEEEeCCC
Q 042644 118 MLKAGEVCVFPRGLLHFGFN-VGYEFATVFSVLNSQN 153 (205)
Q Consensus 118 ~l~~GDv~~vP~G~~H~~~N-~g~~~a~~l~~~~s~~ 153 (205)
.++-||++++|.| .|.+.. .|.. ..++.+.-..+
T Consensus 213 ~V~~~d~V~iP~g-yHp~~aapGy~-~Yylw~maG~~ 247 (261)
T PF04962_consen 213 VVRNGDAVLIPSG-YHPVVAAPGYD-MYYLWVMAGEN 247 (261)
T ss_dssp EEETTEEEEESTT-B-SEEEEEESS-EEEEEEEESSS
T ss_pred EEECCCEEEeCCC-CCCcCcCCCcC-cEEEEEEEcCC
Confidence 8999999999999 444432 2333 44555554444
No 93
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=91.39 E-value=1.9 Score=30.40 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=42.0
Q ss_pred CCcccCCccCCCCC--eEEEEEecEEEEEEEeCCCe--EEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 80 VDGMVVPHTHPRAS--EMLFVFKGVVIAGFVDTNRQ--VFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 80 pgg~~~pH~Hp~a~--Ei~yVl~G~~~v~~~~~~~~--~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
|.++...|.- .+- ..+-|++|++.+...++++. .....+.+|+..++++..+|.+.-.++
T Consensus 12 P~~l~~~H~T-K~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 12 PAALLERHNT-KAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp -GGGGSSBCC-STTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred cHHHHhhcCC-CCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 3455666644 343 44579999999998886542 235688999999999999999987754
No 94
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.33 E-value=1.4 Score=39.50 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccE
Q 042644 64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFA 143 (205)
Q Consensus 64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a 143 (205)
|... .+.+.+.+++.|.....-.- +..-|+.|++|++++.-.. +. ...+++||+++||+...-.+. ..++++
T Consensus 328 Ppi~--eF~v~~~~v~~g~~~~~~~~-~~~SIllv~~G~g~l~~~t--~~--~~~v~rG~V~fI~a~~~i~~~-~~sd~~ 399 (411)
T KOG2757|consen 328 PPIE--EFAVLETKVPTGESYKFPGV-DGPSILLVLKGSGILKTDT--DS--KILVNRGDVLFIPANHPIHLS-SSSDPF 399 (411)
T ss_pred CCCc--ceeEEEeecCCCceEEeecC-CCceEEEEEecceEEecCC--CC--ceeeccCcEEEEcCCCCceee-ccCcce
Confidence 4544 68888999998775433333 5678999999999987532 22 589999999999999877553 345555
Q ss_pred EEEEEE
Q 042644 144 TVFSVL 149 (205)
Q Consensus 144 ~~l~~~ 149 (205)
..+-++
T Consensus 400 ~~yrAf 405 (411)
T KOG2757|consen 400 LGYRAF 405 (411)
T ss_pred eeeecc
Confidence 444333
No 95
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=91.12 E-value=1.8 Score=39.15 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=42.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
.+++.++.+..+....+ ....++++|++|++++.. ++. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~~~---~~~~~Illv~~G~~~i~~---~~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLS---QQSAAILFCVEGEAVLWK---GEQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEec---CCCcEEEEEEcceEEEEe---CCe--EEEECCCCEEEEeCCCccEEE
Confidence 46777777765422222 245799999999999753 333 578999999999998776654
No 96
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=90.93 E-value=0.6 Score=38.77 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=46.0
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
.|+..---|..+ ..|++|=.+|...+.+++. ++.....+++||++..|+.+.|+-+.
T Consensus 41 GPN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqR 97 (279)
T KOG3995|consen 41 GPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQR 97 (279)
T ss_pred CCCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhh
Confidence 444455667774 5799999999999999874 55568899999999999999998643
No 97
>PLN02288 mannose-6-phosphate isomerase
Probab=90.93 E-value=0.92 Score=41.17 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=41.0
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCC
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGL 131 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~ 131 (205)
.+++.++.+.++.......+ +..++++|++|++++.. ++......+++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~---~~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLST---GSSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEec---CCccceEEEeceeEEEEeCCC
Confidence 67888888887754222213 56799999999999753 222123679999999999864
No 98
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=90.70 E-value=2.6 Score=36.58 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=43.3
Q ss_pred ccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 68 TLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 68 ~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
..-+++.++.+....... .+ +...+++|++|++++.. ++. +..+++|+.+++|++.-....
T Consensus 232 ~~~F~~~~~~~~~~~~~~--~~-~~~~il~v~~G~~~i~~---~~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 232 TEYFSVYKWDISGKAEFI--QQ-QSALILSVLEGSGRIKS---GGK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCCeEEEEEEeCCceeec--cC-CCcEEEEEEcceEEEEE---CCE--EEEEecccEEEEccCCccEEE
Confidence 346788888876542121 22 46789999999998753 333 578999999999999865544
No 99
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=89.83 E-value=1.7 Score=28.98 Aligned_cols=57 Identities=19% Similarity=0.039 Sum_probs=41.2
Q ss_pred EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
+.|.||.....+-. +...+-|.+|++-+.. ++....+.|++||.+.+++|.--++..
T Consensus 2 ~~L~~g~~~~lr~~--~~~~l~v~~G~vWlT~---~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAA--AGQRLRVESGRVWLTR---EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcC--CCcEEEEccccEEEEC---CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 35667776665544 3445899999988775 333347999999999999998776654
No 100
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=89.66 E-value=5.5 Score=30.35 Aligned_cols=65 Identities=15% Similarity=0.104 Sum_probs=40.8
Q ss_pred ceEEEEEEEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 70 GLSVARTDLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 70 gis~~~~~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
++.+.++.....-.. .++ +.+.--+.+.++|...+.. +++ ...+.+||+++++.+.++.+...+.
T Consensus 33 ~~~l~~~~~~~~~~vr~~~-~~~~~~l~~~~~G~~~~~~---~g~--~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 33 GLRLSRISYGAQRRVRSDA-PDDHYLLVLPLSGSARIEQ---GGR--EVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred CEEEEEEEcCCCEEEECCC-CCCEEEEEEEccCCEEEEE---CCE--EEEEcCCeEEEEcCCCCEEEEECCC
Confidence 355555555433222 222 1223344556688877664 455 7899999999999999988875533
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.94 E-value=3.3 Score=27.75 Aligned_cols=48 Identities=8% Similarity=0.213 Sum_probs=33.1
Q ss_pred EEcCCccc-CCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEE
Q 042644 77 DLDVDGMV-VPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCV 126 (205)
Q Consensus 77 ~l~pgg~~-~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~ 126 (205)
.+.+|..+ ...- ....+++|++|.+.+...+.+++. ....+.+||++-
T Consensus 3 ~~~~g~~i~~~g~--~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYRQGD--PCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEETTS--BESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred EECCCCEEEeCCC--cCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 34555543 2222 257899999999999988876653 356788888763
No 102
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=83.83 E-value=5.9 Score=31.45 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=70.9
Q ss_pred EEEEcCCcccCCccCC-CCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEeCC--C--CeeEEEecCCccEEEEEE
Q 042644 75 RTDLDVDGMVVPHTHP-RASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPR--G--LLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp-~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~--G--~~H~~~N~g~~~a~~l~~ 148 (205)
...+++|..+-.---+ .+..+++|++|.+.+...+++|+. ....+.+||++-.+. + ..+.... .+++.++.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A--~~~~~v~~i 85 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAGAERAYFAEA--VTDSRIDVL 85 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcCCCCCceEEE--cCceEEEEE
Confidence 3456666644222111 246799999999999988877764 445669999886542 1 1112222 234444333
Q ss_pred EeCC--CCceeec----------------------------ccccc---------C------CCCCCHHHHHhhcCCCHH
Q 042644 149 LNSQ--NPGVVSI----------------------------SDAAF---------S------DFDTIDDLVRKFIPFLCW 183 (205)
Q Consensus 149 ~~s~--~pg~~~~----------------------------~~~~f---------~------~~~~~~evLa~af~v~~~ 183 (205)
+.. +|..... +..+. . ...++.+.||...|++++
T Consensus 86 -~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA~~lG~tre 164 (202)
T PRK13918 86 -NPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGETMIYATHDELAAAVGSVRE 164 (202)
T ss_pred -EHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHHHHhCccHH
Confidence 111 1110000 00010 0 115789999999999999
Q ss_pred HHHHhhhcCCCcccEEE
Q 042644 184 TIRVSEMSHFQDNKLKI 200 (205)
Q Consensus 184 ~v~~l~~~~~~~~~i~i 200 (205)
++.++.+.-.+.+-|.+
T Consensus 165 tvsR~l~~l~~~g~I~~ 181 (202)
T PRK13918 165 TVTKVIGELSREGYIRS 181 (202)
T ss_pred HHHHHHHHHHHCCCEEc
Confidence 99998888777666654
No 103
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.25 E-value=4.8 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.057 Sum_probs=34.8
Q ss_pred CCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 91 RASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 91 ~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
.+.|+..|+.|.+.+.+..+ ..+.+..+|+.|-+|...-.-++
T Consensus 40 a~~E~Mtvv~Gal~v~lpgs---~dWq~~~~Ge~F~VpgnS~F~lq 82 (94)
T COG3123 40 AAPEEMTVVSGALTVLLPGS---DDWQVYTAGEVFNVPGNSEFDLQ 82 (94)
T ss_pred CCceEEEEEeeEEEEEcCCC---cccEEecCCceEEcCCCCeEEEE
Confidence 56799999999999887443 34899999999999998765554
No 104
>PHA02984 hypothetical protein; Provisional
Probab=82.93 E-value=12 Score=32.20 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=44.4
Q ss_pred CeEEE--EEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE-EeCCCC
Q 042644 93 SEMLF--VFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV-LNSQNP 154 (205)
Q Consensus 93 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~-~~s~~p 154 (205)
.|.+| +++|+..+.... +++..+..+++||.|.+.-+.-|.... .+..+++++. ++...|
T Consensus 92 nEy~FvlCl~G~~~I~~~~-~~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~y~v~~p 154 (286)
T PHA02984 92 NEYMFVLCLNGKTSIECFN-KGSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVITYTSNCP 154 (286)
T ss_pred ccEEEEEEcCCeEEEEEec-CCceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEEEEecce
Confidence 46555 569999998765 456678999999999999999999974 4666665543 444433
No 105
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=81.86 E-value=3.5 Score=36.98 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=41.1
Q ss_pred EEcCCcccCCccCCCCCeEEEEEecEEE--EEEEeCC--C---------------eEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 77 DLDVDGMVVPHTHPRASEMLFVFKGVVI--AGFVDTN--R---------------QVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 77 ~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~--v~~~~~~--~---------------~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
-..+||.+.+||-+. -+|+++|.++ ..+.... . -....++.+||+.++|+|.+|+-..
T Consensus 125 ~a~~GGgvg~H~D~Y---DVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gva 201 (383)
T COG2850 125 FAAPGGGVGPHFDQY---DVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVA 201 (383)
T ss_pred EecCCCccCccccch---heeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcc
Confidence 467899999999853 3567777654 3322110 0 0124789999999999999999876
Q ss_pred c
Q 042644 138 V 138 (205)
Q Consensus 138 ~ 138 (205)
.
T Consensus 202 e 202 (383)
T COG2850 202 E 202 (383)
T ss_pred c
Confidence 5
No 106
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=81.83 E-value=14 Score=32.53 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=42.6
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
.+++.++.+..-....- + +...+++|++|++++.. +++ ...|++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~~~~~~~--~-~~~~il~v~eG~~~l~~---~~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEFIK--Q-ESFSILLVLEGEGTLIG---GGQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhhcc--C-CCcEEEEEEcCeEEEec---CCE--EEEEcCCcEEEEEcCCCcEEE
Confidence 57777777765222211 1 36799999999999864 344 799999999999999655543
No 107
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=79.76 E-value=13 Score=29.51 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=53.6
Q ss_pred ceEEEEEEEc--CCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-----eEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644 70 GLSVARTDLD--VDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-----QVFQVMLKAGEVCVFPRGLLHFGFNVGYEF 142 (205)
Q Consensus 70 gis~~~~~l~--pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-----~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~ 142 (205)
++++.|..-. |=.+..+-.||..++.++-+.|+-.+-++.+++ +...+.+.+|+.+.+-+|.+|...-.=+.+
T Consensus 55 ~isifr~~~~~~p~~~~~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~ 134 (162)
T PRK03606 55 LISIFRAQPRALPLEIRMLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEV 134 (162)
T ss_pred EEEEEeCcccCCCcceeeEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCC
Confidence 4555554321 222345567888999999999998877776542 456789999999999999999764332344
Q ss_pred EEEEE
Q 042644 143 ATVFS 147 (205)
Q Consensus 143 a~~l~ 147 (205)
..++.
T Consensus 135 ~dF~v 139 (162)
T PRK03606 135 SDFLV 139 (162)
T ss_pred ceEEE
Confidence 55533
No 108
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=79.29 E-value=9.5 Score=30.25 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=45.0
Q ss_pred ceEEEEEEEcCCc--ccCCccCCCCCeEEEEEecEE-EEEEEeCC------CeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 70 GLSVARTDLDVDG--MVVPHTHPRASEMLFVFKGVV-IAGFVDTN------RQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 70 gis~~~~~l~pgg--~~~pH~Hp~a~Ei~yVl~G~~-~v~~~~~~------~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
++++.+..-.+.- +..+=.||..+|.++-+.|+. .+-++.++ .++..+.+..|+.+.+-+|.+|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 4555555332222 235556788899999999987 55455433 34667999999999999999998644334
Q ss_pred ccEEEEEE
Q 042644 141 EFATVFSV 148 (205)
Q Consensus 141 ~~a~~l~~ 148 (205)
+++.++.+
T Consensus 136 ~~~~f~vv 143 (165)
T PF04115_consen 136 EPADFLVV 143 (165)
T ss_dssp SEEEEEEE
T ss_pred CcceEEEE
Confidence 66666655
No 109
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=78.76 E-value=20 Score=30.98 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=36.6
Q ss_pred CCCeEE-EEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEec--CCccEEEEE
Q 042644 91 RASEML-FVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNV--GYEFATVFS 147 (205)
Q Consensus 91 ~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~--g~~~a~~l~ 147 (205)
...|+. +.+.|.+.+.+ +++ .+.+.+.|.+++|+|..-..... ...|+++..
T Consensus 72 ~rrE~giV~lgG~~~V~v---dG~--~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 72 ERRELGIINIGGAGTVTV---DGE--TYELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred CCcEEEEEEccceEEEEE---CCE--EEecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 445755 56789999886 455 56699999999999977665532 245666544
No 110
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=77.60 E-value=15 Score=29.92 Aligned_cols=35 Identities=9% Similarity=-0.013 Sum_probs=29.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK 202 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~ 202 (205)
.++.+.||..+|++++++.++.+.-.+.|.|++-.
T Consensus 184 ~lt~~~iA~~lG~sr~tvsR~l~~l~~~g~I~~~~ 218 (235)
T PRK11161 184 TMTRGDIGNYLGLTVETISRLLGRFQKSGMLAVKG 218 (235)
T ss_pred cccHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 46789999999999999999988888888776543
No 111
>PLN02868 acyl-CoA thioesterase family protein
Probab=77.33 E-value=11 Score=34.21 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=38.5
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEe
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVF 127 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~v 127 (205)
...+++|.++-.-=. ....+++|++|++++...+++++.....+++||++-.
T Consensus 33 ~~~~~~Ge~I~~~Gd-~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 33 PKRYGKGEYVVREGE-PGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred EEEECCCCEEEeCCC-cCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 456777776533323 4568999999999998877666666678899999884
No 112
>PHA02890 hypothetical protein; Provisional
Probab=76.94 E-value=26 Score=30.01 Aligned_cols=58 Identities=12% Similarity=0.099 Sum_probs=43.4
Q ss_pred CeEEE--EEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEE-EEeCCCC
Q 042644 93 SEMLF--VFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFS-VLNSQNP 154 (205)
Q Consensus 93 ~Ei~y--Vl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~-~~~s~~p 154 (205)
.|.+| +++|+..+.+.. +++..+..+++||.|.+.-+.-|.... ..+.+++ .+....|
T Consensus 91 nEy~FVlCL~Gs~~In~~~-~d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky~vd~p 151 (278)
T PHA02890 91 IECFFVACIEGSCKINVNI-GDREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKFEVDAH 151 (278)
T ss_pred ccEEEEEEeCCeEEEEEec-CCceeeeeeecCceEEEEccceEEEEc---cceeEEEEEEEecce
Confidence 46665 569999998765 466678999999999999999999975 5555544 3444443
No 113
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=76.44 E-value=4.6 Score=35.73 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=30.0
Q ss_pred EEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCcee
Q 042644 114 VFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGVV 157 (205)
Q Consensus 114 ~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~~ 157 (205)
-.+-..++|++++||.|.+|.+.|....-|+.--..+..|.+.+
T Consensus 262 PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 262 PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 34678899999999999999999975543332223334454443
No 114
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=75.28 E-value=8.4 Score=32.15 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=58.5
Q ss_pred cCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEEeCCCCce--
Q 042644 79 DVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVLNSQNPGV-- 156 (205)
Q Consensus 79 ~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~~s~~pg~-- 156 (205)
.-.|....|| ++-.+.|++|+..... +|+....+.++||....|+|......-. +..-++.--..--|..
T Consensus 109 gTeGhsGrh~---ad~y~tIL~G~~~~~~---~g~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lp 180 (216)
T PF04622_consen 109 GTEGHSGRHW---ADDYFTILSGEQWAWS---PGSLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLP 180 (216)
T ss_pred CCCCCCcceE---eeeEEEEEEEEEEEEc---CCCCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhH
Confidence 3345556676 4678899999987654 4555678999999999999998877543 2222222111112221
Q ss_pred eeccccccCCCCCCHHHHHhhcCCCH
Q 042644 157 VSISDAAFSDFDTIDDLVRKFIPFLC 182 (205)
Q Consensus 157 ~~~~~~~f~~~~~~~evLa~af~v~~ 182 (205)
+.+++.+|+ -++-..|-++..+..
T Consensus 181 f~~~dt~~s--TlDf~t~~~T~~~~~ 204 (216)
T PF04622_consen 181 FGFADTLFS--TLDFPTLYRTVYITA 204 (216)
T ss_pred HHHHHHHHh--ccchHHHHHHHHHHH
Confidence 223566777 466666766666543
No 115
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=74.86 E-value=21 Score=24.43 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=35.8
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC-eEEEEEEcCCCEEEeC
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR-QVFQVMLKAGEVCVFP 128 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~-~~~~~~l~~GDv~~vP 128 (205)
...+.+|..+-. ..-....+++|++|.+.+...+.++ +.....+.+||++-..
T Consensus 19 ~~~~~~g~~l~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVIIR-QGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEEe-CCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 355777775422 2334567999999999988765444 3456778899977554
No 116
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=74.60 E-value=15 Score=25.06 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=35.2
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEe
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVF 127 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~v 127 (205)
....+.+|..+-..-- ....+++|++|.+.+...+++|+ .....+.+|+++-.
T Consensus 18 ~~~~~~~g~~l~~~~~-~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGD-PADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCC-CCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcCh
Confidence 3455777775522212 24679999999999988776553 44567788887643
No 117
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=74.36 E-value=27 Score=29.64 Aligned_cols=74 Identities=20% Similarity=0.363 Sum_probs=43.7
Q ss_pred EcCCc---ccCCccCCCC--------CeEEEE----EecEEEEEEEeCCCeE-EEEEEcCCCEEEeCCCCe-----e---
Q 042644 78 LDVDG---MVVPHTHPRA--------SEMLFV----FKGVVIAGFVDTNRQV-FQVMLKAGEVCVFPRGLL-----H--- 133 (205)
Q Consensus 78 l~pgg---~~~pH~Hp~a--------~Ei~yV----l~G~~~v~~~~~~~~~-~~~~l~~GDv~~vP~G~~-----H--- 133 (205)
+-|+| ..|||-|-.+ .|..|- -||-+...+.+.++.+ +...+.-||++.||+|.- |
T Consensus 160 ~Tp~Gn~SSYPPHKHD~d~~p~Es~LEEtYYHrlnP~QGF~fQRVYTddrsLDEtmaV~~~dvvlVP~GYHPv~ap~GYd 239 (270)
T COG3718 160 ITPGGNWSSYPPHKHDEDNLPHESYLEETYYHRLNPPQGFAFQRVYTDDRSLDETMAVENGDVVLVPKGYHPVGAPHGYD 239 (270)
T ss_pred EcCCCCcCCCCCCcccccCCccchhhhhhhhhccCccccceEEEEEcCCCcccceeeeecCCEEEecCCcCccccCCccc
Confidence 55666 4599999544 344453 2675554554433322 467899999999999842 2
Q ss_pred -EEEecCCccEEEEEEEeC
Q 042644 134 -FGFNVGYEFATVFSVLNS 151 (205)
Q Consensus 134 -~~~N~g~~~a~~l~~~~s 151 (205)
+..|.=..|.+.+.+.+.
T Consensus 240 ~YYLNVMAGP~R~W~F~nd 258 (270)
T COG3718 240 SYYLNVMAGPKRKWKFHND 258 (270)
T ss_pred eeeeeeecCcceEEeecCC
Confidence 234544455555544443
No 118
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=73.65 E-value=2.6 Score=36.62 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEcCCCEEEeCCCCeeEEEecCCc
Q 042644 116 QVMLKAGEVCVFPRGLLHFGFNVGYE 141 (205)
Q Consensus 116 ~~~l~~GDv~~vP~G~~H~~~N~g~~ 141 (205)
...+++||++++|+|.+|. + .|..
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA-~-~g~~ 175 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA-Y-KGGL 175 (302)
T ss_pred ccccCCCCEEEeCCCCccc-c-cCce
Confidence 5789999999999999999 4 4433
No 119
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=72.87 E-value=27 Score=29.87 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=42.2
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEE-EEEecEEEEEEEeCCCeEEEEEEcCC--------CEEEeCCCCeeEEEecCC
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEML-FVFKGVVIAGFVDTNRQVFQVMLKAG--------EVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~-yVl~G~~~v~~~~~~~~~~~~~l~~G--------Dv~~vP~G~~H~~~N~g~ 140 (205)
-+.+..+.|++|.....-.- ..|+. +.++|++++.+ +++ ....+..- |.+++|+|..--+.+.++
T Consensus 26 ~~~~~~l~L~~g~~~~~~~~--~~E~~vv~l~G~~~v~~---~g~-~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ 99 (261)
T PF04962_consen 26 YMGFGVLRLEAGESLEFELE--RRELGVVNLGGKATVTV---DGE-EFYELGGRESVFDGPPDALYVPRGTKVVIFASTD 99 (261)
T ss_dssp CBECCCEEEECCHCCCCCCC--SEEEEEEEESSSEEEEE---TTE-EEEEE-TTSSGGGS--EEEEE-TT--EEEEESST
T ss_pred ccceEEEEecCCCEEeccCC--CcEEEEEEeCCEEEEEe---CCc-eEEEecccccccCCCCcEEEeCCCCeEEEEEcCC
Confidence 34556788888886655433 34555 57799999987 442 15667666 999999999988877544
No 120
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=72.81 E-value=14 Score=30.12 Aligned_cols=123 Identities=8% Similarity=-0.057 Sum_probs=72.9
Q ss_pred EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCC---CCe--eEEEecCCccEEEEEEE
Q 042644 76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPR---GLL--HFGFNVGYEFATVFSVL 149 (205)
Q Consensus 76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~---G~~--H~~~N~g~~~a~~l~~~ 149 (205)
..+++|..+-.. ......+++|++|.+.+...+.+|+ .....+.+||++-... +.. +.... .+++.++.+-
T Consensus 34 ~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A--~~~~~i~~i~ 110 (226)
T PRK10402 34 FHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQA--IEECWCLALP 110 (226)
T ss_pred eeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEE--eccEEEEEEE
Confidence 356666654222 2234679999999999998887775 3445679999887542 111 12222 2344433321
Q ss_pred e-------CCCCceeec----------------------------cccccC-----CCCCCHHHHHhhcCCCHHHHHHhh
Q 042644 150 N-------SQNPGVVSI----------------------------SDAAFS-----DFDTIDDLVRKFIPFLCWTIRVSE 189 (205)
Q Consensus 150 ~-------s~~pg~~~~----------------------------~~~~f~-----~~~~~~evLa~af~v~~~~v~~l~ 189 (205)
. ..+|..... +.-+.. ....+.+.||..+|++++++.+..
T Consensus 111 ~~~~~~ll~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~~L~~~~~~~~~~~t~~~lA~~lG~sretvsR~L 190 (226)
T PRK10402 111 MKDCRPLLLNDALFLRKLCKFLSHKNYRNIVSLTQNQSFPLENRLAAFILLTQEGDLYHEKHTQAAEYLGVSYRHLLYVL 190 (226)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcccCCcccchHHHHHHHHCCcHHHHHHHH
Confidence 1 123321110 011110 112567999999999999999999
Q ss_pred hcCCCcccEEEe
Q 042644 190 MSHFQDNKLKIM 201 (205)
Q Consensus 190 ~~~~~~~~i~i~ 201 (205)
+.-.++|-|.+-
T Consensus 191 ~~L~~~G~I~~~ 202 (226)
T PRK10402 191 AQFIQDGYLKKS 202 (226)
T ss_pred HHHHHCCCEEee
Confidence 888888877664
No 121
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=71.33 E-value=3.7 Score=36.15 Aligned_cols=21 Identities=38% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEcCCCEEEeCCCCeeEEE
Q 042644 116 QVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 116 ~~~l~~GDv~~vP~G~~H~~~ 136 (205)
...|++||++++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 589999999999999999985
No 122
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=68.02 E-value=6 Score=35.61 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=45.4
Q ss_pred EEc-CCcccCCc---cCCCCCeEEEEEecEEEEEEEeCCC-------------------------eEEEEEEcCCCEEEe
Q 042644 77 DLD-VDGMVVPH---THPRASEMLFVFKGVVIAGFVDTNR-------------------------QVFQVMLKAGEVCVF 127 (205)
Q Consensus 77 ~l~-pgg~~~pH---~Hp~a~Ei~yVl~G~~~v~~~~~~~-------------------------~~~~~~l~~GDv~~v 127 (205)
.+. .|...|.| +| +.-+...+-|+=+.-+..++. ...+..=++|+++++
T Consensus 203 y~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFv 280 (427)
T KOG2131|consen 203 YAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFV 280 (427)
T ss_pred EeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeec
Confidence 344 35567888 77 346778888887776666542 111344589999999
Q ss_pred CCCCeeEEEecCCc
Q 042644 128 PRGLLHFGFNVGYE 141 (205)
Q Consensus 128 P~G~~H~~~N~g~~ 141 (205)
|.|.-|...|.+++
T Consensus 281 PsGW~hQV~NL~dT 294 (427)
T KOG2131|consen 281 PSGWHHQVLNLGDT 294 (427)
T ss_pred cCccccccccccce
Confidence 99999999999876
No 123
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=67.63 E-value=5.9 Score=35.89 Aligned_cols=30 Identities=23% Similarity=0.139 Sum_probs=23.2
Q ss_pred EEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 115 FQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 115 ~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
....|++||++++|+|.+|... .|. -+++.
T Consensus 237 N~v~l~pGeaifipAg~~HAyl-~G~-~iEim 266 (389)
T PRK15131 237 NVVKLNPGEAMFLFAETPHAYL-QGV-ALEVM 266 (389)
T ss_pred eEEEeCCCCEEEeCCCCCeEEc-CCe-EEEEE
Confidence 4679999999999999999984 354 34433
No 124
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=64.29 E-value=44 Score=26.86 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=48.1
Q ss_pred ccCCccCCCCCeEEEEEec-EEEEEEEeCC-----CeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEE
Q 042644 83 MVVPHTHPRASEMLFVFKG-VVIAGFVDTN-----RQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSV 148 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G-~~~v~~~~~~-----~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~ 148 (205)
+..+-.||..++.+.-+.| ...+.++.++ +....+....|+.+..-+|.+|...-.=+.+..++++
T Consensus 70 i~~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 70 ITMMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eeeEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 3355668888999999999 7666666543 2456789999999999999999975443444555554
No 125
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=62.70 E-value=19 Score=28.05 Aligned_cols=35 Identities=14% Similarity=-0.070 Sum_probs=29.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK 202 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~ 202 (205)
.++.+.||...|++++++.++.+.-.+.|-|.+-+
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~~~~ 177 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDLRKKKLISIHK 177 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecC
Confidence 47899999999999999999888888777776544
No 126
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=62.33 E-value=40 Score=26.20 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCccCCCCCeEEEEEecEEEEEEEeCCC------------------eEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 85 VPHTHPRASEMLFVFKGVVIAGFVDTNR------------------QVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 85 ~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~------------------~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
.+=.|-+-..+-|+++|+-.+++..-.. ......|++|+.+++.++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 3445667788999999998888754211 112578899999999999999875
No 127
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=61.69 E-value=35 Score=29.61 Aligned_cols=46 Identities=4% Similarity=-0.104 Sum_probs=36.9
Q ss_pred CeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCcc
Q 042644 93 SEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEF 142 (205)
Q Consensus 93 ~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~ 142 (205)
.-++++.+|...+... ++. ...+.++.++++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~--~g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTS--SGE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeC--CCc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 4688999999987642 333 579999999999999999998876443
No 128
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=61.38 E-value=92 Score=27.53 Aligned_cols=77 Identities=12% Similarity=0.112 Sum_probs=50.5
Q ss_pred ceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEEEEE
Q 042644 70 GLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVFSVL 149 (205)
Q Consensus 70 gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l~~~ 149 (205)
|+++-.....-+-....-+..+..-+++-.+|.+.+.-.. | +..+.++++.+||+|.-..+.-.|.....++.++
T Consensus 133 GlAIH~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~TEf--G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvY 207 (446)
T KOG1417|consen 133 GLAIHIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITTEF--G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVY 207 (446)
T ss_pred ceEEEEEeecCCcccceeecCCCCEEEecccCcEEEEeec--c---ceeecccceEEeecccEEEEecCCCCcceEEEEe
Confidence 4444443333333344555656666666677777655322 4 3678999999999999988866677777777776
Q ss_pred eC
Q 042644 150 NS 151 (205)
Q Consensus 150 ~s 151 (205)
..
T Consensus 208 g~ 209 (446)
T KOG1417|consen 208 GA 209 (446)
T ss_pred cc
Confidence 53
No 129
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=60.62 E-value=39 Score=26.21 Aligned_cols=124 Identities=9% Similarity=0.070 Sum_probs=74.1
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEEeCCCC-----eeEEEecCCccEEEEE
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCVFPRGL-----LHFGFNVGYEFATVFS 147 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~vP~G~-----~H~~~N~g~~~a~~l~ 147 (205)
....+++|...-..-- .+.-+++|++|.+.+....++|+ .....+.+||++-...-. .+.... -++..++.
T Consensus 24 ~~~~~~~g~~l~~~g~-~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a--~~~~~~~~ 100 (214)
T COG0664 24 EVRKLPKGEVLFTEGE-EADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVA--LTDVEVLE 100 (214)
T ss_pred eeEeeCCCCEEEcCCC-cCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEE--cceEEEEE
Confidence 3445666654433333 23458889999999999887765 334568999998777432 222222 23444443
Q ss_pred EE--------eCCCCceeec----------------------------c------ccccC---------CCCCCHHHHHh
Q 042644 148 VL--------NSQNPGVVSI----------------------------S------DAAFS---------DFDTIDDLVRK 176 (205)
Q Consensus 148 ~~--------~s~~pg~~~~----------------------------~------~~~f~---------~~~~~~evLa~ 176 (205)
+- .. +|..... + ...++ .-.++.+.++.
T Consensus 101 ~~~~~~~~~~~~-~p~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ia~ 179 (214)
T COG0664 101 IPRKDFLELLAE-SPKLALALLRLLARRLRQALERLSLLARKDVEERLARFLLNLGRRLGIATEDGILIPLPLTHKDLAE 179 (214)
T ss_pred ecHHHHHHHHhh-CcHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhccCCCCCCCcEEeccCCHHHHHH
Confidence 31 12 3432211 0 11111 01477899999
Q ss_pred hcCCCHHHHHHhhhcCCCcccEEEe
Q 042644 177 FIPFLCWTIRVSEMSHFQDNKLKIM 201 (205)
Q Consensus 177 af~v~~~~v~~l~~~~~~~~~i~i~ 201 (205)
..+++.+++.++..+-.+.+.|..-
T Consensus 180 ~~g~~~~~vsr~l~~l~~~g~i~~~ 204 (214)
T COG0664 180 YLGLSRETVSRILKELRKDGLISVR 204 (214)
T ss_pred HhCCchhhHHHHHHHHHhCCcEeeC
Confidence 9999999999988887777766543
No 130
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=58.37 E-value=92 Score=26.54 Aligned_cols=84 Identities=12% Similarity=0.031 Sum_probs=53.5
Q ss_pred eEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCC----C-eEEEEEEcCCCEEEeC
Q 042644 54 SLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTN----R-QVFQVMLKAGEVCVFP 128 (205)
Q Consensus 54 ~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~----~-~~~~~~l~~GDv~~vP 128 (205)
++..++..+ ++..- +.+..++|.+|....--.- +-.-++++++|++.+...+.. | |.-.++=++=|.+++|
T Consensus 15 ~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~~-~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp 90 (270)
T COG3718 15 LVQDVTPES-AGWEY--VGFRLLRLAAGESATEETG-DRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVP 90 (270)
T ss_pred ceEEecCCC-CCcee--EEEEEEEccCCCcccccCC-CceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEec
Confidence 565555433 34442 4555667899987766555 334556778999998754321 2 2223444567999999
Q ss_pred CCCeeEEEecCCc
Q 042644 129 RGLLHFGFNVGYE 141 (205)
Q Consensus 129 ~G~~H~~~N~g~~ 141 (205)
.|....+...++-
T Consensus 91 ~g~~~~vtA~t~~ 103 (270)
T COG3718 91 AGSAFSVTATTDL 103 (270)
T ss_pred CCceEEEEeecce
Confidence 9999888765543
No 131
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=58.29 E-value=19 Score=28.46 Aligned_cols=36 Identities=14% Similarity=-0.057 Sum_probs=28.4
Q ss_pred CCCCHHHHHhhcCCCHHHHHHhhhcC------CCcccEEEee
Q 042644 167 FDTIDDLVRKFIPFLCWTIRVSEMSH------FQDNKLKIMK 202 (205)
Q Consensus 167 ~~~~~evLa~af~v~~~~v~~l~~~~------~~~~~i~i~~ 202 (205)
|..+++-+|+.|+++++.+++++... |+.|+|.=++
T Consensus 97 ~~l~~dElA~sF~l~~e~i~qLr~~kiltVh~De~G~Ii~V~ 138 (153)
T PRK14584 97 PDLDDDELASSFALSPELIAQLKSGSCLTLYNDEHGHIIDVK 138 (153)
T ss_pred CCCChHHHHHHcCCCHHHHHHHHhCCeEEEEECCCCCEEEee
Confidence 47899999999999999999999864 4555554444
No 132
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=57.75 E-value=13 Score=28.82 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=23.5
Q ss_pred CCCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644 167 FDTIDDLVRKFIPFLCWTIRVSEMSH 192 (205)
Q Consensus 167 ~~~~~evLa~af~v~~~~v~~l~~~~ 192 (205)
|..+++.||+.|+++++.+++++.+.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~~ 113 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKSH 113 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcCC
Confidence 47889999999999999999999864
No 133
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.12 E-value=5.6 Score=33.17 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=35.7
Q ss_pred CccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEE
Q 042644 67 NTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFV 108 (205)
Q Consensus 67 ~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~ 108 (205)
.+-++|+..+.+++++++|.|-||.-+-+.-++-|+..+.-.
T Consensus 71 EcD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 71 ECDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred ecCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 466899999999999999999999877777788999987543
No 134
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=56.06 E-value=61 Score=28.98 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=60.9
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEEE--eC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVCV--FP 128 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~~--vP 128 (205)
|..+..++.+. ++.-..+.|+.++..-++.-+...+...+-.++|..-++.++.++|+ .-...|++||-+. ++
T Consensus 252 G~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~~~ 327 (344)
T PRK02290 252 GDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGYLE 327 (344)
T ss_pred CCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEec
Confidence 55565555332 23357888999999988877766577888899999999999999887 4567999999554 46
Q ss_pred CCCeeEEEec
Q 042644 129 RGLLHFGFNV 138 (205)
Q Consensus 129 ~G~~H~~~N~ 138 (205)
.+--|+-...
T Consensus 328 ~~~RHfG~~i 337 (344)
T PRK02290 328 EAARHFGMAI 337 (344)
T ss_pred CCccccccee
Confidence 6666665433
No 135
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=55.40 E-value=31 Score=28.12 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.6
Q ss_pred EEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEe
Q 042644 75 RTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVF 127 (205)
Q Consensus 75 ~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~v 127 (205)
...+++|..+. +-......+++|++|.+.+.....+++..-..+.+||++-.
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~ 83 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFIL 83 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhh
Confidence 45567776543 23334568999999999998765555555567889997643
No 136
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=54.28 E-value=75 Score=24.49 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=32.8
Q ss_pred ccCCccCCCCCeEEEEEecEEEEEEE-eCC-------------------C-eEEEEEEcCCCEEEeCCCCeeEEE
Q 042644 83 MVVPHTHPRASEMLFVFKGVVIAGFV-DTN-------------------R-QVFQVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~-~~~-------------------~-~~~~~~l~~GDv~~vP~G~~H~~~ 136 (205)
-..+=.|-+-..+-|+++|+=++++. ... + ......|++|+.+++-++.+|.-.
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 34555676778899999999988883 221 0 112467999999999999999843
No 137
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=54.24 E-value=29 Score=24.23 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred EEcCCcccCCccCC---CCCeEEEE--Ee-cE-----EEEEEEeC---CCeEEEEE-----EcCCCEEEeCC-CCeeEEE
Q 042644 77 DLDVDGMVVPHTHP---RASEMLFV--FK-GV-----VIAGFVDT---NRQVFQVM-----LKAGEVCVFPR-GLLHFGF 136 (205)
Q Consensus 77 ~l~pgg~~~pH~Hp---~a~Ei~yV--l~-G~-----~~v~~~~~---~~~~~~~~-----l~~GDv~~vP~-G~~H~~~ 136 (205)
...+|+...||+.. ....+.++ ++ .. +...+... ++...... .++|++++++. ..+|...
T Consensus 5 ~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v~ 84 (100)
T PF13640_consen 5 RYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGVT 84 (100)
T ss_dssp EEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEEE
T ss_pred EECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecCc
Confidence 45788899999875 22223233 33 11 33333321 11112233 88999999999 9999987
Q ss_pred ec
Q 042644 137 NV 138 (205)
Q Consensus 137 N~ 138 (205)
-.
T Consensus 85 ~v 86 (100)
T PF13640_consen 85 PV 86 (100)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 138
>COG1741 Pirin-related protein [General function prediction only]
Probab=52.45 E-value=1.6e+02 Score=25.54 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=29.8
Q ss_pred CCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEE
Q 042644 62 DFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAG 106 (205)
Q Consensus 62 ~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~ 106 (205)
..|.-... +-+..+.+++|+..+.+ =....-++||++|.+.+.
T Consensus 165 ~~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 165 SSPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred ccccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 34444444 77888889999977666 112246889999988763
No 139
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=51.79 E-value=8.3 Score=22.24 Aligned_cols=29 Identities=3% Similarity=-0.097 Sum_probs=21.6
Q ss_pred CCHHHHHhhcCCCHHHHHHhhhcCCCccc
Q 042644 169 TIDDLVRKFIPFLCWTIRVSEMSHFQDNK 197 (205)
Q Consensus 169 ~~~evLa~af~v~~~~v~~l~~~~~~~~~ 197 (205)
++.+-||...|++.+++.++.+.-.+++-
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGL 31 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCC
Confidence 56788999999999999998877665553
No 140
>PHA00672 hypothetical protein
Probab=50.99 E-value=1.1e+02 Score=23.50 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=52.9
Q ss_pred cceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCCccEE
Q 042644 69 LGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGYEFAT 144 (205)
Q Consensus 69 ~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~ 144 (205)
.|+-+..+.++.|-++.--.| +- +-+.+.+|.+.+.. ++. ..+|+.=.++.-|+|-....+...+..+.
T Consensus 45 ~GvYARei~IPkGt~LtG~~h-kf-~~~ii~sG~itV~t---dge--~~rl~g~~~i~~~aG~KragyAHeDT~wt 113 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALI-KV-STVLIFSGHATVFI---GGE--AVELRGYHVIPASAGRKQAFVAHADTDLT 113 (152)
T ss_pred cceeEEEEeccCceeeeeeee-Ee-eEEEEecccEEEEe---CCc--EEEEecceeeecCCCcccceeeeccceEE
Confidence 478888889999998877778 44 44499999999875 343 57888888999999988888876555443
No 141
>PF13994 PgaD: PgaD-like protein
Probab=50.97 E-value=19 Score=27.56 Aligned_cols=25 Identities=4% Similarity=-0.039 Sum_probs=22.5
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSH 192 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~ 192 (205)
..+++-+|+.|+++++++++++.++
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~k 124 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQAK 124 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhCC
Confidence 3889999999999999999999763
No 142
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=50.87 E-value=57 Score=24.95 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=20.3
Q ss_pred ccCCccCCCCCeEEEEEecEEEEEEEe
Q 042644 83 MVVPHTHPRASEMLFVFKGVVIAGFVD 109 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~ 109 (205)
-..+=.|-+-..+-|+++|+=++++..
T Consensus 60 ~~~~E~Hr~YiDIq~~l~G~E~i~~~~ 86 (142)
T TIGR00022 60 SKKAELHHRYLDIQLLLRGEENIEVGT 86 (142)
T ss_pred hcchhhhhheEEEEEeecceEEEEEec
Confidence 344455666788999999999888853
No 143
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=49.21 E-value=18 Score=22.02 Aligned_cols=29 Identities=7% Similarity=-0.253 Sum_probs=18.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcc
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDN 196 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~ 196 (205)
+.+..-+|+.+|++..++.++.....+.|
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~~G 45 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYREEG 45 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccccc
Confidence 57889999999999999999998876554
No 144
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=48.67 E-value=75 Score=24.36 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=45.0
Q ss_pred CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEE----ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVF----KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl----~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
|+++ .+.+.++.|+.|...--- +..|+...+ .|++.+++-++.+ ..+++||++-+-.|..-.+++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 5666 677778888887755433 334666554 5667777665333 578999999999998877754
No 145
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=46.64 E-value=24 Score=34.99 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=43.1
Q ss_pred EEEEcCCcc-cCCccCCCCCeEEEEEecEEEEE----------------EEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 75 RTDLDVDGM-VVPHTHPRASEMLFVFKGVVIAG----------------FVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 75 ~~~l~pgg~-~~pH~Hp~a~Ei~yVl~G~~~v~----------------~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
-..+++||- +--|.+ ....++|.+.++..-. +.+.-.+.+.-.|++|+.++||.|.+|..+.
T Consensus 140 dfhidfggtsvwyhil-~G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~T 218 (776)
T KOG1633|consen 140 DFHIDFGGTSVWYHIL-AGEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLT 218 (776)
T ss_pred ccccCCCCcchhhhhh-ccccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeec
Confidence 344667764 455777 5567777776654311 1111123356789999999999999999986
Q ss_pred cCCccE
Q 042644 138 VGYEFA 143 (205)
Q Consensus 138 ~g~~~a 143 (205)
.-+.-+
T Consensus 219 p~d~l~ 224 (776)
T KOG1633|consen 219 PTDCLV 224 (776)
T ss_pred Ccchhe
Confidence 544433
No 146
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=45.29 E-value=63 Score=29.01 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=60.5
Q ss_pred CeeEEEeccCCCCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCe-EEEEEEcCCCEE--EeC
Q 042644 52 YSSLTLVTAADFPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQ-VFQVMLKAGEVC--VFP 128 (205)
Q Consensus 52 g~~~~~~~~~~~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~-~~~~~l~~GDv~--~vP 128 (205)
|..+..++.+. ++.-+.+.|+.++..-++.-.-..+..++-.++|...++.++.++|+ .-...|++||-+ .+.
T Consensus 262 G~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~~~ 337 (354)
T PF01959_consen 262 GDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVYLE 337 (354)
T ss_pred CCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEEec
Confidence 44555554322 23357888999999888766666577889999999999999999887 446799999955 446
Q ss_pred CCCeeEEEec
Q 042644 129 RGLLHFGFNV 138 (205)
Q Consensus 129 ~G~~H~~~N~ 138 (205)
.+--|+-+..
T Consensus 338 ~~~RHfG~~I 347 (354)
T PF01959_consen 338 EAGRHFGMKI 347 (354)
T ss_pred CCCcccceEe
Confidence 6767766543
No 147
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=44.43 E-value=16 Score=24.26 Aligned_cols=34 Identities=3% Similarity=-0.045 Sum_probs=29.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM 201 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~ 201 (205)
.++.+.||...|++.+++.++.+.-.+.+.|.+-
T Consensus 28 ~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~ 61 (76)
T PF13545_consen 28 PLTQEEIADMLGVSRETVSRILKRLKDEGIIEVK 61 (76)
T ss_dssp ESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEc
Confidence 5789999999999999999999888888877654
No 148
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=41.09 E-value=34 Score=20.72 Aligned_cols=24 Identities=8% Similarity=-0.263 Sum_probs=18.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhc
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMS 191 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~ 191 (205)
+++..-+|+.|+++..++.++...
T Consensus 21 G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 21 GMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp T--HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhc
Confidence 688999999999999999988754
No 149
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=39.91 E-value=96 Score=24.48 Aligned_cols=58 Identities=16% Similarity=0.037 Sum_probs=40.8
Q ss_pred ccCCccCCCCCeEEEEEecEEEEEEEeCCC--------------------eEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 83 MVVPHTHPRASEMLFVFKGVVIAGFVDTNR--------------------QVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 83 ~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~--------------------~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
..-+=+|-+--.+-++++|+=.+++....+ .....+|.+|+..++=+|.+|...-...
T Consensus 60 ~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~~~ 137 (154)
T COG2731 60 EKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCNVG 137 (154)
T ss_pred hcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccccC
Confidence 334455666789999999998877754321 0124788999999999999998643333
No 150
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=39.80 E-value=1.2e+02 Score=20.45 Aligned_cols=47 Identities=23% Similarity=0.149 Sum_probs=31.7
Q ss_pred EecEEEEEEEeCCC-eEEEEEEcCCCEEEeCCCCeeEEEecCCccEEEE
Q 042644 99 FKGVVIAGFVDTNR-QVFQVMLKAGEVCVFPRGLLHFGFNVGYEFATVF 146 (205)
Q Consensus 99 l~G~~~v~~~~~~~-~~~~~~l~~GDv~~vP~G~~H~~~N~g~~~a~~l 146 (205)
..|...+.+.+.+| .+++..+++||..-++....-.+ ..|+..++-+
T Consensus 5 a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~~i-~iGna~~v~v 52 (77)
T PF13464_consen 5 ATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPFRI-RIGNAGAVEV 52 (77)
T ss_pred EeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCEEE-EEeCCCcEEE
Confidence 35677777776666 47889999999998855554444 4566555433
No 151
>PLN02288 mannose-6-phosphate isomerase
Probab=39.30 E-value=22 Score=32.30 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=19.3
Q ss_pred EEEEcCCCEEEeCCCCeeEEE
Q 042644 116 QVMLKAGEVCVFPRGLLHFGF 136 (205)
Q Consensus 116 ~~~l~~GDv~~vP~G~~H~~~ 136 (205)
...|++||.+++|+|.+|...
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 589999999999999999874
No 152
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=36.21 E-value=93 Score=30.83 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=32.9
Q ss_pred EEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEE
Q 042644 74 ARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV 126 (205)
Q Consensus 74 ~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~ 126 (205)
....+.||..+-.-=. ...++++|++|++.+.....+.+.....+++||++-
T Consensus 398 ~~~~~~pge~I~~qge-~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FG 449 (823)
T PLN03192 398 KAEYIPPREDVIMQNE-APDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFG 449 (823)
T ss_pred heeeeCCCCEEEECCC-CCceEEEEEecEEEEEEecCCcceeeEEccCCCEec
Confidence 3445777764432222 346899999999998643322333456799999873
No 153
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=35.23 E-value=14 Score=36.53 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=37.5
Q ss_pred EcCCcccCCccCCCCCeEEEEEecEE-----EEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecC
Q 042644 78 LDVDGMVVPHTHPRASEMLFVFKGVV-----IAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVG 139 (205)
Q Consensus 78 l~pgg~~~pH~Hp~a~Ei~yVl~G~~-----~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g 139 (205)
.+-|..+++=.||-...-+|+-++.- +.|+ +-+++.=.-||.++||+|.+|..+|.-
T Consensus 762 ~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV-----e~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 762 KEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV-----EPWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC-----CccchhhcccceEEecCCCcHHhhhhh
Confidence 34455666666777776666654421 1221 113456678999999999999999864
No 154
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=35.19 E-value=33 Score=20.76 Aligned_cols=34 Identities=3% Similarity=-0.136 Sum_probs=25.6
Q ss_pred CCCCCHHHHHhhcCCCHHHHHHhhhcCCCcccEE
Q 042644 166 DFDTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLK 199 (205)
Q Consensus 166 ~~~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~ 199 (205)
.|.++...||+.++++..++.+....-.+.|.|+
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 4678999999999999999988877666666553
No 155
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=34.77 E-value=95 Score=20.14 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=20.5
Q ss_pred EEEEEeCCCeEEEEEEcCCCEEEeCCCCeeE
Q 042644 104 IAGFVDTNRQVFQVMLKAGEVCVFPRGLLHF 134 (205)
Q Consensus 104 ~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~ 134 (205)
++++-|+.++.+..+|++|..+---+|.++.
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~H 41 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIRH 41 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEEH
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccch
Confidence 4677888888899999999999887776653
No 156
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=34.35 E-value=3e+02 Score=23.56 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=50.8
Q ss_pred CccceEEEEEEEcCCcc---cCCccCCCCCeEEEEE---ecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEecCC
Q 042644 67 NTLGLSVARTDLDVDGM---VVPHTHPRASEMLFVF---KGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFNVGY 140 (205)
Q Consensus 67 ~~~gis~~~~~l~pgg~---~~pH~Hp~a~Ei~yVl---~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N~g~ 140 (205)
.+-.+++..-.|+||.+ .|+|.|-+-.|..+-. +-+-.+.+...-++.....++--+.++-|+=.+|.- .|.
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG--~GT 250 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSG--VGT 250 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecC--ccc
Confidence 33356777778999995 4999998888876433 111222222222333356677778888888888876 455
Q ss_pred ccEEEEEEE
Q 042644 141 EFATVFSVL 149 (205)
Q Consensus 141 ~~a~~l~~~ 149 (205)
..-.||.+-
T Consensus 251 ~~YtFIWaM 259 (278)
T COG3717 251 ANYTFIWAM 259 (278)
T ss_pred cceEEEEEe
Confidence 665565544
No 157
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=34.31 E-value=40 Score=22.41 Aligned_cols=32 Identities=9% Similarity=-0.109 Sum_probs=26.9
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEE
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLK 199 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~ 199 (205)
++....|++.+|++..++++....-.+.+.|.
T Consensus 22 ~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~ 53 (68)
T smart00550 22 TSTALQLAKNLGLPKKEVNRVLYSLEKKGKVC 53 (68)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 38899999999999999999988776666653
No 158
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=34.03 E-value=86 Score=29.51 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=32.4
Q ss_pred EEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEE
Q 042644 76 TDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVC 125 (205)
Q Consensus 76 ~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~ 125 (205)
..+-||...---=- -+.|++.|.+|.+.+ ++++|...-.++++|+++
T Consensus 333 qvfSPgDyICrKGd-vgkEMyIVk~G~L~V--v~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 333 QVFSPGDYICRKGD-VGKEMYIVKEGKLAV--VADDGVTVFVTLKAGSVF 379 (536)
T ss_pred eeeCCCCeEEecCc-ccceEEEEEccEEEE--EecCCcEEEEEecCCcee
Confidence 34455554433222 467999999999875 556776667899999877
No 159
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=33.36 E-value=63 Score=19.13 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=27.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK 202 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~ 202 (205)
.++..-|++.|+++..++.+....-.+.+.|.-..
T Consensus 14 ~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 14 KVSVEELAELLGVSEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEee
Confidence 57788999999999999988887777766665443
No 160
>PF06413 Neugrin: Neugrin; InterPro: IPR010487 This family contains mouse and human neugrin proteins. Neugrin and m-neugrin are mainly expressed in neurons in the nervous system, and are thought to play an important role in the process of neuronal differentiation []. Homologues of neugrin are found in fungi suggesting they have a alternative role or more than one function.
Probab=32.59 E-value=44 Score=28.02 Aligned_cols=27 Identities=11% Similarity=-0.125 Sum_probs=23.7
Q ss_pred CCHHHHHhhcCCCHHHHHHhhhcCCCc
Q 042644 169 TIDDLVRKFIPFLCWTIRVSEMSHFQD 195 (205)
Q Consensus 169 ~~~evLa~af~v~~~~v~~l~~~~~~~ 195 (205)
++.+.||..|.|+++.|++|..+.-+.
T Consensus 30 ~t~~~Lae~F~vspe~irrILkskw~p 56 (225)
T PF06413_consen 30 WTVERLAESFKVSPEAIRRILKSKWVP 56 (225)
T ss_pred cCHHHHHhhCCCCHHHHHHHHhcCCCC
Confidence 678999999999999999999886544
No 161
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=30.77 E-value=2.5e+02 Score=21.58 Aligned_cols=52 Identities=17% Similarity=0.017 Sum_probs=39.6
Q ss_pred CCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe---cCCccEEEEEE
Q 042644 92 ASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN---VGYEFATVFSV 148 (205)
Q Consensus 92 a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N---~g~~~a~~l~~ 148 (205)
..-+.+|++|+=++.+. ++ .+...+|+.++.+..++-...- ..++|...+..
T Consensus 23 ~p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l 77 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSL 77 (155)
T ss_pred CCeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEE
Confidence 35689999999988873 33 6899999999999998876643 34567666553
No 162
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=29.71 E-value=93 Score=25.18 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=33.1
Q ss_pred EEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 95 MLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 95 i~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
+..-++|++.+.+.. .|..+...|.+|+-++|.++.+-.+..
T Consensus 132 ~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~~ 173 (215)
T PF01987_consen 132 FMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWSG 173 (215)
T ss_dssp EEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEET
T ss_pred EEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEECC
Confidence 345678999888765 577888999999999999998887754
No 163
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=29.55 E-value=31 Score=22.89 Aligned_cols=34 Identities=0% Similarity=-0.151 Sum_probs=27.3
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM 201 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~ 201 (205)
.++..-||+-|++++++++.+...-...|+|+=.
T Consensus 14 ~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 14 RVSLAELAREFGISPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 4577899999999999999999988888888744
No 164
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=29.51 E-value=27 Score=35.16 Aligned_cols=62 Identities=11% Similarity=0.159 Sum_probs=44.7
Q ss_pred CCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEE
Q 042644 64 PGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCV 126 (205)
Q Consensus 64 P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~ 126 (205)
|-|....+++-.+.++||..+--.=- .+.++++|+.|+++.-.-.++++. ...++..||++=
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD-~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG 561 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGD-SSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIG 561 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCC-ccCcEEEEecCeehhhhhccCccchhhhhccCcceee
Confidence 45566788999999999987655433 578999999999986543333442 456778888873
No 165
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=28.69 E-value=94 Score=30.67 Aligned_cols=48 Identities=15% Similarity=0.298 Sum_probs=32.4
Q ss_pred EcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEE
Q 042644 78 LDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCV 126 (205)
Q Consensus 78 l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~ 126 (205)
+.||..+-..=.+ -+|+.+|++|++.+.-.+.++......|++||++=
T Consensus 447 f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G 494 (727)
T KOG0498|consen 447 FTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG 494 (727)
T ss_pred cCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence 4455544444343 46899999999987654433445578999999984
No 166
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=27.77 E-value=56 Score=20.49 Aligned_cols=23 Identities=4% Similarity=-0.321 Sum_probs=19.9
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhh
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEM 190 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~ 190 (205)
+.+.+.||.-||+++.++.++-.
T Consensus 19 ~~~~~~La~~FgIs~stvsri~~ 41 (53)
T PF13613_consen 19 NLTFQDLAYRFGISQSTVSRIFH 41 (53)
T ss_pred CCcHhHHhhheeecHHHHHHHHH
Confidence 57889999999999999988754
No 167
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=27.72 E-value=65 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=22.5
Q ss_pred CcceeccCCCCCceeeeCCcCCCCCCCCCCCCceee
Q 042644 4 LQDICPTDTTKKQTIFINGLPCKSPDRIFASDFKST 39 (205)
Q Consensus 4 ~~d~cv~~~~~~~~~~~~g~~ck~~~~~~~~df~~~ 39 (205)
.-|||++.+.....+-+-|.---.|+ -.+||+|.
T Consensus 108 ~YDy~I~~P~~~~kiwIaGd~g~~~t--r~dDy~fE 141 (161)
T PF10365_consen 108 TYDYCIAAPQPGGKIWIAGDGGDGPT--RGDDYVFE 141 (161)
T ss_pred eeEEEEecCCCCCeEEEecCCCCCCc--cccceEEe
Confidence 35999998866444777765433333 47888877
No 168
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=27.45 E-value=52 Score=25.56 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=28.0
Q ss_pred CCeEEEEEecEEEEEEEeCCCeE-EEEEEcCCCEEEe
Q 042644 92 ASEMLFVFKGVVIAGFVDTNRQV-FQVMLKAGEVCVF 127 (205)
Q Consensus 92 a~Ei~yVl~G~~~v~~~~~~~~~-~~~~l~~GDv~~v 127 (205)
...+++|++|.+.+...+++|+. .-..+.+||++-.
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~ 47 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGV 47 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeee
Confidence 35688999999999988877653 3567899998754
No 169
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=27.15 E-value=80 Score=18.44 Aligned_cols=33 Identities=3% Similarity=-0.058 Sum_probs=27.2
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEE
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKI 200 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i 200 (205)
.++...|++.++++..++.+....-.+.+.|..
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 467889999999999999988887777776654
No 170
>PF14502 HTH_41: Helix-turn-helix domain
Probab=26.31 E-value=63 Score=20.44 Aligned_cols=34 Identities=9% Similarity=-0.128 Sum_probs=28.8
Q ss_pred CHHHHHhhcCCCHHHHHHhhhcCCCcccEEEeee
Q 042644 170 IDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKH 203 (205)
Q Consensus 170 ~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~~ 203 (205)
+-+.+++-|+++..+++.-.+--++.++|.|.+.
T Consensus 8 tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~Le~r 41 (48)
T PF14502_consen 8 TISEYSEKFGVSRGTIQNALKFLEENGAIKLESR 41 (48)
T ss_pred CHHHHHHHhCcchhHHHHHHHHHHHCCcEEeeec
Confidence 3577888999999999998888888899988764
No 171
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=26.00 E-value=48 Score=23.51 Aligned_cols=33 Identities=3% Similarity=-0.319 Sum_probs=27.6
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEE
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKI 200 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i 200 (205)
+.+..-.++.|||+..++.++.....+.|.-++
T Consensus 25 g~~~a~aA~~~gVS~~Ta~kW~~Ryra~G~~GL 57 (85)
T PF13011_consen 25 GWPVAHAAAEFGVSRRTAYKWLARYRAEGEAGL 57 (85)
T ss_pred CCcHHHHHHHhCCCHHHHHHHHHHHHHcCcccc
Confidence 688899999999999999999988776665444
No 172
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=25.68 E-value=56 Score=24.62 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=19.8
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSH 192 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~ 192 (205)
||++..||+.+++++++|++++...
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~ 96 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEH 96 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHc
Confidence 8999999999999999999988754
No 173
>PHA02591 hypothetical protein; Provisional
Probab=25.49 E-value=90 Score=21.90 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=24.6
Q ss_pred ccccccCCCCCCHHHHHhhcCCCHHHHHHhhhc
Q 042644 159 ISDAAFSDFDTIDDLVRKFIPFLCWTIRVSEMS 191 (205)
Q Consensus 159 ~~~~~f~~~~~~~evLa~af~v~~~~v~~l~~~ 191 (205)
++.-+... +++.+-+|+.+|++.++|++...+
T Consensus 51 vA~eL~eq-GlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 51 VTHELARK-GFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred HHHHHHHc-CCCHHHHHHHhCCCHHHHHHHHhc
Confidence 33334333 899999999999999999987654
No 174
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=25.39 E-value=76 Score=20.08 Aligned_cols=34 Identities=3% Similarity=-0.043 Sum_probs=28.1
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEe
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIM 201 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~ 201 (205)
.++..-|++.++++..++.++...-.+.+.|...
T Consensus 25 ~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~~ 58 (67)
T cd00092 25 PLTRQEIADYLGLTRETVSRTLKELEEEGLISRR 58 (67)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 5789999999999999999988877777766543
No 175
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=24.82 E-value=46 Score=22.08 Aligned_cols=35 Identities=6% Similarity=-0.051 Sum_probs=28.1
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEee
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMK 202 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~ 202 (205)
++....+|++++++.-++++....-++.|.|+-.+
T Consensus 15 p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 15 PLKTREIADALGLSIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp -EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEEEES
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec
Confidence 57789999999999999999988888888876543
No 176
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=24.41 E-value=2.4e+02 Score=23.58 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.9
Q ss_pred EEEEcCCCEEEeCCCCeeEEEecC
Q 042644 116 QVMLKAGEVCVFPRGLLHFGFNVG 139 (205)
Q Consensus 116 ~~~l~~GDv~~vP~G~~H~~~N~g 139 (205)
...+++|+++++|...+|...-+.
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEecCCCeEEEECCCCceeeeecc
Confidence 577899999999999999987643
No 177
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=23.75 E-value=55 Score=20.87 Aligned_cols=30 Identities=10% Similarity=-0.162 Sum_probs=23.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcCCCccc
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSHFQDNK 197 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~~~~~~ 197 (205)
.+..+-|++.|++|..++++=...-++.+.
T Consensus 14 ~~s~~ela~~~~VS~~TiRRDl~~L~~~g~ 43 (57)
T PF08220_consen 14 KVSVKELAEEFGVSEMTIRRDLNKLEKQGL 43 (57)
T ss_pred CEEHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 467788999999999999886665555554
No 178
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=23.30 E-value=58 Score=29.02 Aligned_cols=74 Identities=15% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCCCCccceEEEEEEEcCCcccCCccCCCCCeEEEEEecEEEEEEEeCCC--e---------------------------
Q 042644 63 FPGLNTLGLSVARTDLDVDGMVVPHTHPRASEMLFVFKGVVIAGFVDTNR--Q--------------------------- 113 (205)
Q Consensus 63 ~P~l~~~gis~~~~~l~pgg~~~pH~Hp~a~Ei~yVl~G~~~v~~~~~~~--~--------------------------- 113 (205)
+|.....++.+.....+.|.+.|.|.-|. .-++.-+.|+.++.+.-+.. .
T Consensus 242 ~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~~ 320 (355)
T KOG2132|consen 242 FPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPKF 320 (355)
T ss_pred cCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhHH
Confidence 34555445666666677788999997776 56777788888877754421 0
Q ss_pred ----EEEEEEcCCCEEEeCCCCeeEEEe
Q 042644 114 ----VFQVMLKAGEVCVFPRGLLHFGFN 137 (205)
Q Consensus 114 ----~~~~~l~~GDv~~vP~G~~H~~~N 137 (205)
.....|.+||++++|+-..|+...
T Consensus 321 ~k~~~l~~lL~pGe~L~iP~kwwhyvrs 348 (355)
T KOG2132|consen 321 AKARFLDCLLEPGEALFIPPKWWHYVRS 348 (355)
T ss_pred HHHHHHHHhcCCchhccccHHHhhhhhh
Confidence 013678899999999999998864
No 179
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.09 E-value=1.6e+02 Score=19.63 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=18.3
Q ss_pred EEEEEeCCCeEEEEEEcCCCEEE
Q 042644 104 IAGFVDTNRQVFQVMLKAGEVCV 126 (205)
Q Consensus 104 ~v~~~~~~~~~~~~~l~~GDv~~ 126 (205)
.=|++.++||.+.++...|++.+
T Consensus 37 ~GGvV~eDgR~y~F~Y~~G~i~Y 59 (62)
T PF15513_consen 37 TGGVVMEDGRHYTFVYENGQISY 59 (62)
T ss_pred eccEEEeCCCEEEEEEeCCcEEE
Confidence 34566678999999999998875
No 180
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=22.77 E-value=54 Score=28.83 Aligned_cols=39 Identities=28% Similarity=0.525 Sum_probs=26.4
Q ss_pred ccCCCCCeEEEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeC
Q 042644 87 HTHPRASEMLFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFP 128 (205)
Q Consensus 87 H~Hp~a~Ei~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP 128 (205)
|+||+. -|...+....+++.++.-..+...++||.+++=
T Consensus 131 hthpd~---~y~vl~v~i~gl~~~e~Ii~s~~Ak~GD~lI~~ 169 (324)
T COG2144 131 HTHPDT---PYCVLDVVIGGLIAEEPIITSGTAKPGDLLIFV 169 (324)
T ss_pred ccCCCC---CCceeeeEEecccccccccccCCCCcCCEEEEE
Confidence 999864 455666677777665433336788999988764
No 181
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=21.76 E-value=85 Score=26.83 Aligned_cols=35 Identities=9% Similarity=-0.068 Sum_probs=32.0
Q ss_pred CCHHHHHhhcCCCHHHHHHhhhcCCCcccEEEeee
Q 042644 169 TIDDLVRKFIPFLCWTIRVSEMSHFQDNKLKIMKH 203 (205)
Q Consensus 169 ~~~evLa~af~v~~~~v~~l~~~~~~~~~i~i~~~ 203 (205)
+..+.|.++.|+++.++.++.++-+++|.|++.|-
T Consensus 211 i~Q~eL~r~lglsktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 211 ITQAELRRALGLSKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred EeHHHHHHhhCCChHHHHHHHHHHHhCCceEEEEe
Confidence 56788999999999999999999999999999885
No 182
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=21.68 E-value=1e+02 Score=18.70 Aligned_cols=30 Identities=7% Similarity=-0.076 Sum_probs=24.4
Q ss_pred CHHHHHhhcCCCHHHHHHhhhcCCCcccEE
Q 042644 170 IDDLVRKFIPFLCWTIRVSEMSHFQDNKLK 199 (205)
Q Consensus 170 ~~evLa~af~v~~~~v~~l~~~~~~~~~i~ 199 (205)
+..-|++.|+++..++++....-.+.+-|.
T Consensus 22 s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 22 SERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 588899999999999998877766666553
No 183
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=21.21 E-value=4.2e+02 Score=20.97 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=42.0
Q ss_pred EEEEEEEcCCcccCCccCCC-CCeEEEEEecE-EEEEEEeCCCeEEEEEE----cCCCE--EEeCCCCeeE-EEecC
Q 042644 72 SVARTDLDVDGMVVPHTHPR-ASEMLFVFKGV-VIAGFVDTNRQVFQVML----KAGEV--CVFPRGLLHF-GFNVG 139 (205)
Q Consensus 72 s~~~~~l~pgg~~~pH~Hp~-a~Ei~yVl~G~-~~v~~~~~~~~~~~~~l----~~GDv--~~vP~G~~H~-~~N~g 139 (205)
.....-|+++.+ -|||.. +.|+.+...|. +.+.+.. +|+..+++| +.|++ ++||.|.+.. ....|
T Consensus 45 T~IYyLLe~~~~--s~~HRv~a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g 118 (162)
T COG3542 45 TAIYYLLEEDNI--SAWHRVTADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLG 118 (162)
T ss_pred EEEEEEecCCcc--chheecchhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecC
Confidence 344455777774 455544 89999998886 6666665 676655544 56664 7889995543 34344
No 184
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=20.67 E-value=1e+02 Score=21.22 Aligned_cols=25 Identities=4% Similarity=-0.179 Sum_probs=21.4
Q ss_pred CCCHHHHHhhcCCCHHHHHHhhhcC
Q 042644 168 DTIDDLVRKFIPFLCWTIRVSEMSH 192 (205)
Q Consensus 168 ~~~~evLa~af~v~~~~v~~l~~~~ 192 (205)
..|-|.++.-||+++.++-+|+.+.
T Consensus 13 RtpFeaI~~~fGL~E~eVi~lMR~~ 37 (72)
T TIGR03643 13 RTPFEAIEQQFGLSEKEVIKLMRQN 37 (72)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHhh
Confidence 4688999999999999998887654
No 185
>PHA02699 hypothetical protein; Provisional
Probab=20.54 E-value=2.6e+02 Score=25.44 Aligned_cols=74 Identities=19% Similarity=0.298 Sum_probs=41.0
Q ss_pred EEEcCCccc-CCccCCCCCeE--EEEEecEEEEEEEeCCCeEEEEEEcCCCEEEeCCCCeeEEE-ecCCccEEEEEEE
Q 042644 76 TDLDVDGMV-VPHTHPRASEM--LFVFKGVVIAGFVDTNRQVFQVMLKAGEVCVFPRGLLHFGF-NVGYEFATVFSVL 149 (205)
Q Consensus 76 ~~l~pgg~~-~pH~Hp~a~Ei--~yVl~G~~~v~~~~~~~~~~~~~l~~GDv~~vP~G~~H~~~-N~g~~~a~~l~~~ 149 (205)
+.++-|-.. .-|++++..-+ ..+++-++..++.-++.+.....++.||++++|+----.+. -.|.+-..++..+
T Consensus 148 VKLkHGN~fm~~~m~~~sagFvAtICIKNeGiSgI~Vp~T~~lktnmqeGD~IVsRSsRGI~FLPQIGGeAiYLIVsL 225 (466)
T PHA02699 148 LKLKHDEWYMRHHMAPDMAAFVAIICIKNEGMAAIAVNNTKFLKTNIQEGDAIVFPAARGMFFLPHIGGDAEYIILTL 225 (466)
T ss_pred EEeeccchhhcccccCcccceEEEEEEcCCCeeEEEecCCcceeeeeecCCEEEEehhchhhhhhhcCCceEEEEEEE
Confidence 445555433 22445444433 34666666666555555556789999999999975433332 2344434444434
No 186
>COG3093 VapI Plasmid maintenance system antidote protein [General function prediction only]
Probab=20.29 E-value=64 Score=23.82 Aligned_cols=21 Identities=5% Similarity=-0.418 Sum_probs=16.3
Q ss_pred HHHhhcCCCHHHHHHhhhcCC
Q 042644 173 LVRKFIPFLCWTIRVSEMSHF 193 (205)
Q Consensus 173 vLa~af~v~~~~v~~l~~~~~ 193 (205)
-|+++||.+.+.+-.+|++.|
T Consensus 57 rL~k~fGtspefWlNlQ~~yd 77 (104)
T COG3093 57 RLAKVFGTSPEFWLNLQNAYD 77 (104)
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 378888888888888887665
No 187
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=20.27 E-value=72 Score=25.04 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=8.2
Q ss_pred CCCHHHHHhhc
Q 042644 168 DTIDDLVRKFI 178 (205)
Q Consensus 168 ~~~~evLa~af 178 (205)
++..+.+++.+
T Consensus 160 G~tretvsR~l 170 (202)
T PRK13918 160 GSVRETVTKVI 170 (202)
T ss_pred CccHHHHHHHH
Confidence 57888888755
Done!