Query 042645
Match_columns 427
No_of_seqs 351 out of 2567
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:13:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-63 3.3E-68 513.4 34.5 407 12-427 6-438 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-48 3.1E-53 364.0 19.0 273 153-427 1-277 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.5E-34 3.3E-39 313.2 31.4 257 147-419 183-456 (1153)
4 PRK00411 cdc6 cell division co 99.6 5.7E-13 1.2E-17 129.8 23.2 205 145-352 27-256 (394)
5 TIGR03015 pepcterm_ATPase puta 99.5 4.8E-12 1.1E-16 116.7 24.5 181 167-355 41-242 (269)
6 PRK04841 transcriptional regul 99.5 7.3E-13 1.6E-17 142.9 21.6 244 143-412 9-278 (903)
7 PF01637 Arch_ATPase: Archaeal 99.5 1.9E-13 4.1E-18 123.2 10.9 196 150-351 1-234 (234)
8 TIGR02928 orc1/cdc6 family rep 99.5 1.8E-11 3.9E-16 118.1 25.1 204 146-350 13-245 (365)
9 COG2909 MalT ATP-dependent tra 99.3 7.5E-11 1.6E-15 118.1 17.3 245 145-413 16-285 (894)
10 PF05729 NACHT: NACHT domain 99.3 1.9E-11 4.1E-16 103.9 10.9 142 170-319 1-163 (166)
11 PRK00080 ruvB Holliday junctio 99.3 2.7E-11 5.8E-16 114.7 12.4 239 148-414 25-275 (328)
12 TIGR00635 ruvB Holliday juncti 99.3 2.1E-10 4.5E-15 107.8 17.2 190 148-354 4-204 (305)
13 COG2256 MGS1 ATPase related to 99.1 1.4E-09 3.1E-14 100.5 14.6 175 149-353 25-214 (436)
14 PRK06893 DNA replication initi 99.1 6.5E-10 1.4E-14 99.5 11.7 155 168-355 38-207 (229)
15 PRK07003 DNA polymerase III su 99.1 4.4E-09 9.6E-14 105.8 17.4 195 148-353 16-223 (830)
16 COG1474 CDC6 Cdc6-related prot 99.1 1.3E-08 2.9E-13 96.6 19.6 193 146-343 15-229 (366)
17 COG3899 Predicted ATPase [Gene 99.1 1.1E-09 2.4E-14 115.0 13.3 257 150-416 2-325 (849)
18 PRK13342 recombination factor 99.1 2.7E-09 5.9E-14 104.1 14.9 178 148-355 12-200 (413)
19 PTZ00112 origin recognition co 99.1 1.6E-08 3.5E-13 102.5 19.7 173 147-321 754-951 (1164)
20 TIGR03420 DnaA_homol_Hda DnaA 99.0 1.6E-09 3.5E-14 97.1 10.5 169 153-354 22-204 (226)
21 PRK12402 replication factor C 99.0 7E-09 1.5E-13 98.9 13.8 198 148-354 15-229 (337)
22 PRK14960 DNA polymerase III su 99.0 2.4E-08 5.3E-13 99.5 17.1 193 148-351 15-219 (702)
23 PRK00440 rfc replication facto 98.9 6.7E-08 1.4E-12 91.4 17.6 182 148-352 17-204 (319)
24 PF13173 AAA_14: AAA domain 98.9 1.6E-09 3.5E-14 87.7 5.6 120 169-311 2-127 (128)
25 PRK14949 DNA polymerase III su 98.9 1.7E-08 3.7E-13 103.6 14.0 194 148-352 16-221 (944)
26 PRK14961 DNA polymerase III su 98.9 4.3E-08 9.2E-13 94.0 16.1 193 148-352 16-221 (363)
27 PF05496 RuvB_N: Holliday junc 98.9 1.1E-08 2.4E-13 88.5 10.7 176 148-357 24-227 (233)
28 PRK14963 DNA polymerase III su 98.9 5.1E-08 1.1E-12 96.6 16.6 190 148-350 14-216 (504)
29 PRK08727 hypothetical protein; 98.9 3.3E-08 7.2E-13 88.7 13.6 171 149-352 20-205 (233)
30 PF13401 AAA_22: AAA domain; P 98.9 3E-09 6.5E-14 86.6 6.0 117 168-288 3-125 (131)
31 PRK04195 replication factor C 98.9 7.6E-08 1.7E-12 95.9 16.6 182 148-357 14-208 (482)
32 PRK12323 DNA polymerase III su 98.9 3.4E-08 7.3E-13 98.3 13.7 195 148-351 16-225 (700)
33 PLN03025 replication factor C 98.9 3.5E-08 7.6E-13 93.1 13.1 184 148-352 13-201 (319)
34 PTZ00202 tuzin; Provisional 98.9 2.3E-07 5.1E-12 87.7 18.1 163 143-319 257-434 (550)
35 cd00009 AAA The AAA+ (ATPases 98.8 2.8E-08 6E-13 82.3 10.5 123 151-290 1-131 (151)
36 PRK08084 DNA replication initi 98.8 5E-08 1.1E-12 87.7 12.4 173 150-355 25-213 (235)
37 PRK05564 DNA polymerase III su 98.8 1.9E-07 4.1E-12 87.9 16.7 176 148-349 4-188 (313)
38 KOG2028 ATPase related to the 98.8 1.1E-07 2.3E-12 86.9 14.0 174 149-347 139-332 (554)
39 PRK14958 DNA polymerase III su 98.8 2.3E-07 5E-12 92.2 17.4 194 148-352 16-221 (509)
40 TIGR02903 spore_lon_C ATP-depe 98.8 3.4E-06 7.3E-11 86.1 25.9 202 148-354 154-398 (615)
41 PRK07471 DNA polymerase III su 98.8 3.7E-07 8E-12 87.0 17.1 196 148-352 19-239 (365)
42 PRK14957 DNA polymerase III su 98.8 1.4E-07 3.1E-12 93.7 14.7 181 148-351 16-221 (546)
43 PRK14956 DNA polymerase III su 98.8 9.3E-08 2E-12 92.7 12.9 194 148-352 18-223 (484)
44 PRK06645 DNA polymerase III su 98.8 2.5E-07 5.4E-12 91.4 16.2 195 148-350 21-228 (507)
45 COG3903 Predicted ATPase [Gene 98.8 5.9E-09 1.3E-13 97.1 4.4 238 168-418 13-258 (414)
46 PRK14964 DNA polymerase III su 98.8 2E-07 4.3E-12 91.4 14.8 193 148-351 13-217 (491)
47 PF13191 AAA_16: AAA ATPase do 98.7 2.4E-08 5.1E-13 86.5 7.5 46 149-194 1-49 (185)
48 PRK13341 recombination factor 98.7 9.9E-08 2.1E-12 98.2 13.0 174 148-351 28-217 (725)
49 TIGR02397 dnaX_nterm DNA polym 98.7 4.1E-07 9E-12 87.4 16.6 182 148-352 14-219 (355)
50 PRK09087 hypothetical protein; 98.7 1.1E-07 2.5E-12 84.6 11.7 146 168-355 43-199 (226)
51 PRK14962 DNA polymerase III su 98.7 2.9E-07 6.2E-12 90.6 15.5 196 148-355 14-223 (472)
52 PRK14951 DNA polymerase III su 98.7 2E-07 4.4E-12 93.9 14.6 197 148-351 16-225 (618)
53 PRK08691 DNA polymerase III su 98.7 1.7E-07 3.8E-12 94.3 13.9 192 148-352 16-221 (709)
54 PRK07994 DNA polymerase III su 98.7 1.5E-07 3.4E-12 94.9 13.1 194 148-352 16-221 (647)
55 PRK09112 DNA polymerase III su 98.7 2.8E-07 6E-12 87.3 13.7 197 147-352 22-241 (351)
56 PRK08903 DnaA regulatory inact 98.7 1.7E-07 3.6E-12 84.1 11.5 168 152-356 23-204 (227)
57 PRK07940 DNA polymerase III su 98.7 6.1E-07 1.3E-11 86.2 15.9 184 148-349 5-211 (394)
58 PRK05896 DNA polymerase III su 98.7 3.6E-07 7.8E-12 91.1 14.4 190 148-349 16-218 (605)
59 PF14516 AAA_35: AAA-like doma 98.7 3.1E-06 6.7E-11 80.1 20.1 201 147-358 10-246 (331)
60 PRK14970 DNA polymerase III su 98.7 6.2E-07 1.3E-11 86.5 15.7 182 148-351 17-209 (367)
61 PRK14955 DNA polymerase III su 98.7 1.7E-07 3.7E-12 90.9 11.9 198 148-350 16-227 (397)
62 PRK07764 DNA polymerase III su 98.7 4.6E-07 9.9E-12 94.6 15.2 190 148-349 15-219 (824)
63 cd01128 rho_factor Transcripti 98.7 4.3E-08 9.3E-13 88.1 6.2 92 168-263 15-115 (249)
64 PRK14969 DNA polymerase III su 98.6 4.4E-07 9.6E-12 90.8 13.8 190 148-349 16-218 (527)
65 PRK14959 DNA polymerase III su 98.6 1.4E-06 3.1E-11 87.3 17.3 196 148-355 16-225 (624)
66 PRK05642 DNA replication initi 98.6 3.7E-07 8E-12 82.0 11.9 154 169-355 45-212 (234)
67 TIGR00678 holB DNA polymerase 98.6 1.4E-06 3.1E-11 75.6 15.2 157 159-347 3-187 (188)
68 PF05621 TniB: Bacterial TniB 98.6 2.2E-06 4.8E-11 77.8 16.7 195 156-352 45-262 (302)
69 TIGR01242 26Sp45 26S proteasom 98.6 5.1E-07 1.1E-11 86.8 13.3 171 148-346 122-329 (364)
70 PRK09111 DNA polymerase III su 98.6 8.8E-07 1.9E-11 89.5 14.6 197 148-352 24-234 (598)
71 KOG0989 Replication factor C, 98.6 4.4E-07 9.5E-12 81.3 10.8 187 148-351 36-230 (346)
72 PRK14952 DNA polymerase III su 98.6 1.5E-06 3.2E-11 87.4 15.8 194 148-353 13-222 (584)
73 PF00308 Bac_DnaA: Bacterial d 98.6 1E-06 2.2E-11 78.2 12.6 162 169-352 34-209 (219)
74 PRK14087 dnaA chromosomal repl 98.5 3.6E-06 7.7E-11 82.8 16.5 167 169-353 141-321 (450)
75 PRK14954 DNA polymerase III su 98.5 3E-06 6.5E-11 85.8 16.3 197 148-348 16-225 (620)
76 PRK14950 DNA polymerase III su 98.5 3E-06 6.5E-11 86.3 16.1 195 148-353 16-223 (585)
77 KOG2227 Pre-initiation complex 98.5 1.2E-05 2.6E-10 76.2 17.9 205 147-356 149-373 (529)
78 COG2255 RuvB Holliday junction 98.5 9.4E-06 2E-10 72.1 15.7 222 148-404 26-283 (332)
79 PRK06305 DNA polymerase III su 98.5 4.4E-06 9.6E-11 82.1 15.4 190 148-350 17-221 (451)
80 PRK14953 DNA polymerase III su 98.5 5.7E-06 1.2E-10 81.9 16.1 189 148-352 16-221 (486)
81 TIGR03345 VI_ClpV1 type VI sec 98.5 2.9E-06 6.3E-11 89.7 14.8 180 148-345 187-390 (852)
82 PRK14965 DNA polymerase III su 98.5 7.1E-06 1.5E-10 83.3 16.9 194 148-353 16-223 (576)
83 PRK08451 DNA polymerase III su 98.5 6.2E-06 1.3E-10 81.8 16.0 194 148-352 14-219 (535)
84 TIGR02881 spore_V_K stage V sp 98.5 2.2E-06 4.8E-11 78.5 12.0 155 149-322 7-194 (261)
85 PRK14971 DNA polymerase III su 98.4 5.6E-06 1.2E-10 84.3 15.8 176 148-350 17-221 (614)
86 PRK09376 rho transcription ter 98.4 7.5E-07 1.6E-11 83.8 8.5 99 160-262 159-267 (416)
87 TIGR00362 DnaA chromosomal rep 98.4 2E-05 4.3E-10 77.0 18.6 181 169-371 136-337 (405)
88 PRK03992 proteasome-activating 98.4 5.4E-06 1.2E-10 80.2 14.5 170 148-345 131-337 (389)
89 TIGR02880 cbbX_cfxQ probable R 98.4 5E-06 1.1E-10 76.8 13.7 132 171-321 60-210 (284)
90 PRK07133 DNA polymerase III su 98.4 5.7E-06 1.2E-10 84.4 15.0 186 148-350 18-218 (725)
91 PRK14948 DNA polymerase III su 98.4 8.5E-06 1.9E-10 83.0 15.8 196 148-353 16-224 (620)
92 CHL00181 cbbX CbbX; Provisiona 98.4 9.5E-06 2E-10 75.0 14.4 133 170-321 60-211 (287)
93 KOG2543 Origin recognition com 98.4 5.4E-06 1.2E-10 76.6 12.4 199 147-356 5-231 (438)
94 PRK06647 DNA polymerase III su 98.4 1.2E-05 2.7E-10 80.9 16.2 193 148-351 16-220 (563)
95 PRK05563 DNA polymerase III su 98.4 1.7E-05 3.6E-10 80.2 16.6 192 148-351 16-220 (559)
96 TIGR00767 rho transcription te 98.4 2E-06 4.4E-11 81.3 9.3 94 167-262 166-266 (415)
97 PRK14088 dnaA chromosomal repl 98.3 4.5E-06 9.7E-11 81.9 11.8 182 169-371 130-332 (440)
98 PRK06620 hypothetical protein; 98.3 5.8E-06 1.3E-10 73.0 11.3 138 170-352 45-190 (214)
99 PHA02544 44 clamp loader, smal 98.3 5.5E-06 1.2E-10 78.2 11.8 173 148-348 21-206 (316)
100 PRK00149 dnaA chromosomal repl 98.3 1.1E-05 2.3E-10 80.0 14.2 181 169-371 148-349 (450)
101 PRK11331 5-methylcytosine-spec 98.3 7.1E-06 1.5E-10 78.9 12.1 107 148-262 175-283 (459)
102 TIGR02639 ClpA ATP-dependent C 98.3 7E-06 1.5E-10 86.0 13.0 155 148-319 182-358 (731)
103 COG1373 Predicted ATPase (AAA+ 98.3 1.2E-05 2.6E-10 77.8 13.3 135 152-314 21-162 (398)
104 PRK14086 dnaA chromosomal repl 98.3 3.5E-05 7.6E-10 77.2 16.4 158 170-349 315-486 (617)
105 PRK07399 DNA polymerase III su 98.3 5.9E-05 1.3E-09 70.6 17.0 198 148-353 4-223 (314)
106 PRK12422 chromosomal replicati 98.3 4.5E-05 9.7E-10 74.8 16.8 152 170-345 142-307 (445)
107 PTZ00454 26S protease regulato 98.2 2.3E-05 5.1E-10 75.6 13.4 172 148-346 145-352 (398)
108 CHL00095 clpC Clp protease ATP 98.2 6.1E-06 1.3E-10 87.5 9.9 154 148-318 179-353 (821)
109 PTZ00361 26 proteosome regulat 98.2 1.3E-05 2.8E-10 78.0 11.2 171 149-346 184-390 (438)
110 COG3267 ExeA Type II secretory 98.2 0.00016 3.6E-09 63.6 16.2 182 167-353 49-247 (269)
111 TIGR01241 FtsH_fam ATP-depende 98.1 0.0001 2.2E-09 74.0 16.7 177 148-351 55-267 (495)
112 TIGR03689 pup_AAA proteasome A 98.1 1.7E-05 3.6E-10 78.4 10.8 158 148-321 182-380 (512)
113 PRK10865 protein disaggregatio 98.1 2.3E-05 4.9E-10 83.2 12.5 154 148-319 178-354 (857)
114 PRK05707 DNA polymerase III su 98.1 0.00012 2.5E-09 69.0 15.9 167 169-351 22-203 (328)
115 TIGR03346 chaperone_ClpB ATP-d 98.1 3.1E-05 6.7E-10 82.5 12.7 156 148-319 173-349 (852)
116 PRK11034 clpA ATP-dependent Cl 98.1 2E-05 4.4E-10 81.8 10.8 155 149-319 187-362 (758)
117 smart00382 AAA ATPases associa 98.1 1.7E-05 3.8E-10 64.7 8.4 89 170-265 3-92 (148)
118 TIGR00763 lon ATP-dependent pr 98.1 0.00079 1.7E-08 71.2 22.1 157 148-319 320-505 (775)
119 PF00004 AAA: ATPase family as 98.0 1.7E-05 3.7E-10 64.2 7.3 22 172-193 1-22 (132)
120 PF05673 DUF815: Protein of un 98.0 0.00015 3.3E-09 64.0 13.3 46 148-193 27-76 (249)
121 COG0593 DnaA ATPase involved i 98.0 7.2E-05 1.6E-09 71.3 12.0 182 168-374 112-316 (408)
122 CHL00176 ftsH cell division pr 98.0 0.00021 4.6E-09 73.0 15.6 169 148-343 183-386 (638)
123 KOG0991 Replication factor C, 98.0 9.1E-05 2E-09 64.0 10.8 46 148-193 27-72 (333)
124 TIGR00602 rad24 checkpoint pro 97.9 5.4E-05 1.2E-09 76.8 10.5 201 148-355 84-327 (637)
125 PRK10536 hypothetical protein; 97.9 0.00021 4.6E-09 63.8 13.0 132 148-289 55-213 (262)
126 KOG0741 AAA+-type ATPase [Post 97.9 0.00033 7.1E-09 67.6 14.7 156 168-355 537-716 (744)
127 PRK08058 DNA polymerase III su 97.9 0.00033 7.1E-09 66.3 14.9 162 149-318 6-181 (329)
128 PRK08116 hypothetical protein; 97.9 4E-05 8.6E-10 70.2 8.0 101 170-288 115-220 (268)
129 PRK08769 DNA polymerase III su 97.9 0.00065 1.4E-08 63.5 16.0 182 154-352 10-209 (319)
130 PF10443 RNA12: RNA12 protein; 97.9 0.0005 1.1E-08 65.5 15.1 200 153-361 1-288 (431)
131 COG1222 RPT1 ATP-dependent 26S 97.9 0.00043 9.4E-09 63.8 14.1 169 150-346 153-358 (406)
132 KOG0733 Nuclear AAA ATPase (VC 97.9 0.00025 5.4E-09 69.6 13.1 169 149-344 191-395 (802)
133 PRK06871 DNA polymerase III su 97.8 0.0012 2.5E-08 61.9 16.7 177 155-348 9-200 (325)
134 PRK12608 transcription termina 97.8 0.00014 3E-09 68.6 10.1 105 156-262 119-231 (380)
135 PF13177 DNA_pol3_delta2: DNA 97.8 0.00026 5.7E-09 59.6 10.8 135 152-307 1-162 (162)
136 PRK06090 DNA polymerase III su 97.8 0.0013 2.8E-08 61.4 16.3 176 155-351 10-201 (319)
137 PRK08118 topology modulation p 97.8 5.9E-05 1.3E-09 63.9 6.9 36 170-205 2-37 (167)
138 COG2812 DnaX DNA polymerase II 97.8 9.9E-05 2.1E-09 72.6 8.8 187 148-346 16-215 (515)
139 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00032 6.9E-09 69.4 12.2 174 148-346 228-430 (489)
140 COG0466 Lon ATP-dependent Lon 97.7 0.00029 6.4E-09 70.5 11.6 158 147-319 322-508 (782)
141 TIGR01243 CDC48 AAA family ATP 97.7 0.00032 7E-09 73.8 12.4 171 149-346 179-382 (733)
142 PRK07261 topology modulation p 97.7 0.0001 2.2E-09 62.7 7.2 66 171-261 2-67 (171)
143 PF07693 KAP_NTPase: KAP famil 97.7 0.0016 3.5E-08 61.7 15.8 41 154-194 2-45 (325)
144 PRK10787 DNA-binding ATP-depen 97.7 0.00029 6.3E-09 74.0 11.4 158 147-319 321-506 (784)
145 TIGR01243 CDC48 AAA family ATP 97.7 0.00081 1.8E-08 70.9 14.8 171 149-346 454-658 (733)
146 PRK06964 DNA polymerase III su 97.7 0.0026 5.7E-08 60.0 16.7 91 250-351 131-225 (342)
147 PRK07993 DNA polymerase III su 97.7 0.0023 5E-08 60.5 15.8 177 155-349 9-202 (334)
148 TIGR02640 gas_vesic_GvpN gas v 97.6 0.0013 2.8E-08 60.2 13.6 56 155-218 9-64 (262)
149 KOG0730 AAA+-type ATPase [Post 97.6 0.0012 2.5E-08 65.7 13.8 170 149-345 435-637 (693)
150 TIGR02639 ClpA ATP-dependent C 97.6 0.00036 7.7E-09 73.3 11.1 46 148-193 454-508 (731)
151 PF00448 SRP54: SRP54-type pro 97.6 0.0002 4.3E-09 62.3 7.7 89 169-260 1-92 (196)
152 KOG2228 Origin recognition com 97.6 0.0011 2.5E-08 60.6 12.5 170 148-320 24-220 (408)
153 PF04665 Pox_A32: Poxvirus A32 97.6 0.00015 3.4E-09 64.3 6.9 35 171-208 15-49 (241)
154 PRK08181 transposase; Validate 97.6 0.00011 2.3E-09 67.0 5.8 105 162-289 101-209 (269)
155 PRK04296 thymidine kinase; Pro 97.6 6.1E-05 1.3E-09 65.3 3.8 113 170-290 3-117 (190)
156 PRK04132 replication factor C 97.6 0.0013 2.9E-08 68.8 14.0 157 177-354 574-734 (846)
157 PRK06526 transposase; Provisio 97.5 9.9E-05 2.1E-09 66.9 4.5 74 169-263 98-171 (254)
158 TIGR02902 spore_lonB ATP-depen 97.5 0.00049 1.1E-08 69.3 9.6 46 148-193 65-110 (531)
159 PRK09361 radB DNA repair and r 97.5 0.0005 1.1E-08 61.4 8.4 89 168-261 22-117 (225)
160 PRK10865 protein disaggregatio 97.4 0.0012 2.6E-08 70.4 12.0 47 147-193 567-622 (857)
161 TIGR03345 VI_ClpV1 type VI sec 97.4 0.00048 1E-08 73.2 8.9 47 147-193 565-620 (852)
162 COG1223 Predicted ATPase (AAA+ 97.4 0.0045 9.7E-08 54.7 13.2 170 148-345 121-319 (368)
163 KOG0735 AAA+-type ATPase [Post 97.4 0.00067 1.4E-08 67.8 8.9 155 168-348 430-613 (952)
164 PRK12377 putative replication 97.4 0.00089 1.9E-08 60.3 9.0 75 168-262 100-174 (248)
165 PRK12727 flagellar biosynthesi 97.4 0.01 2.2E-07 58.7 16.8 88 169-261 350-438 (559)
166 KOG0734 AAA+-type ATPase conta 97.4 0.0018 3.8E-08 62.8 11.2 45 149-193 305-361 (752)
167 PRK09183 transposase/IS protei 97.4 0.00034 7.4E-09 63.7 6.3 25 169-193 102-126 (259)
168 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00081 1.8E-08 71.8 10.0 47 147-193 564-619 (852)
169 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3E-09 58.0 3.3 23 171-193 1-23 (121)
170 KOG2035 Replication factor C, 97.4 0.00071 1.5E-08 60.2 7.9 208 150-374 15-261 (351)
171 COG0470 HolB ATPase involved i 97.4 0.0011 2.4E-08 62.8 10.0 44 150-193 3-48 (325)
172 COG1484 DnaC DNA replication p 97.4 0.00089 1.9E-08 60.7 8.8 75 168-262 104-178 (254)
173 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00021 4.5E-09 67.1 4.8 46 149-194 52-103 (361)
174 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0034 7.5E-08 61.9 13.1 152 169-345 545-718 (802)
175 TIGR02237 recomb_radB DNA repa 97.4 0.0011 2.4E-08 58.4 9.3 90 168-262 11-108 (209)
176 PF02562 PhoH: PhoH-like prote 97.4 0.00026 5.7E-09 61.4 5.0 129 152-289 4-156 (205)
177 PF01695 IstB_IS21: IstB-like 97.4 0.00022 4.8E-09 61.0 4.4 75 168-263 46-120 (178)
178 TIGR02012 tigrfam_recA protein 97.4 0.00054 1.2E-08 63.8 7.1 87 168-262 54-144 (321)
179 cd01393 recA_like RecA is a b 97.4 0.0022 4.7E-08 57.3 11.0 94 168-262 18-125 (226)
180 PRK06921 hypothetical protein; 97.3 0.00049 1.1E-08 62.9 6.7 39 168-208 116-154 (266)
181 CHL00095 clpC Clp protease ATP 97.3 0.0004 8.7E-09 73.9 7.1 47 147-193 508-563 (821)
182 cd00983 recA RecA is a bacter 97.3 0.00053 1.1E-08 63.9 7.0 87 168-262 54-144 (325)
183 KOG1514 Origin recognition com 97.3 0.011 2.4E-07 59.3 16.4 197 147-350 395-620 (767)
184 PRK08699 DNA polymerase III su 97.3 0.004 8.7E-08 58.6 12.9 69 250-318 112-184 (325)
185 PRK08939 primosomal protein Dn 97.3 0.00063 1.4E-08 63.4 7.4 116 152-288 135-260 (306)
186 cd01394 radB RadB. The archaea 97.3 0.0019 4.2E-08 57.3 10.2 89 168-261 18-113 (218)
187 KOG2004 Mitochondrial ATP-depe 97.3 0.0019 4.1E-08 64.8 10.6 157 147-319 410-596 (906)
188 COG0542 clpA ATP-binding subun 97.3 0.0008 1.7E-08 69.1 8.3 104 147-263 490-605 (786)
189 PRK10733 hflB ATP-dependent me 97.3 0.0028 6E-08 65.6 12.4 148 170-344 186-356 (644)
190 PRK09354 recA recombinase A; P 97.3 0.00078 1.7E-08 63.3 7.5 87 168-262 59-149 (349)
191 KOG0731 AAA+-type ATPase conta 97.3 0.0042 9E-08 63.6 13.0 174 149-349 312-522 (774)
192 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0019 4.1E-08 58.1 9.8 94 168-262 18-126 (235)
193 cd00561 CobA_CobO_BtuR ATP:cor 97.3 0.00058 1.3E-08 56.7 5.8 117 170-290 3-139 (159)
194 COG0542 clpA ATP-binding subun 97.3 0.0015 3.2E-08 67.2 9.6 154 149-318 171-345 (786)
195 PRK06835 DNA replication prote 97.2 0.00085 1.8E-08 63.1 7.0 100 170-288 184-288 (329)
196 KOG0743 AAA+-type ATPase [Post 97.2 0.15 3.2E-06 49.1 21.6 167 170-373 236-433 (457)
197 PF03215 Rad17: Rad17 cell cyc 97.2 0.0031 6.8E-08 62.9 11.1 53 150-207 21-78 (519)
198 KOG1969 DNA replication checkp 97.2 0.0011 2.5E-08 66.5 7.7 73 168-263 325-399 (877)
199 PRK07952 DNA replication prote 97.2 0.0025 5.3E-08 57.3 9.2 76 169-263 99-174 (244)
200 cd01120 RecA-like_NTPases RecA 97.2 0.003 6.5E-08 52.9 9.4 39 171-212 1-39 (165)
201 TIGR02238 recomb_DMC1 meiotic 97.2 0.0027 5.8E-08 59.4 9.6 94 168-262 95-202 (313)
202 cd01131 PilT Pilus retraction 97.2 0.00056 1.2E-08 59.7 4.8 110 170-292 2-112 (198)
203 PRK06696 uridine kinase; Valid 97.2 0.00061 1.3E-08 60.8 5.1 42 152-193 2-46 (223)
204 COG1875 NYN ribonuclease and A 97.2 0.00069 1.5E-08 62.6 5.4 136 151-289 227-388 (436)
205 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0028 6.1E-08 57.1 9.4 89 168-262 20-137 (237)
206 KOG0744 AAA+-type ATPase [Post 97.1 0.0019 4.1E-08 58.8 7.7 83 169-263 177-262 (423)
207 PRK11034 clpA ATP-dependent Cl 97.1 0.0011 2.3E-08 69.3 7.2 46 148-193 458-512 (758)
208 PLN00020 ribulose bisphosphate 97.1 0.0014 3.1E-08 61.4 7.1 27 167-193 146-172 (413)
209 PRK00771 signal recognition pa 97.1 0.0034 7.4E-08 61.3 10.0 89 168-260 94-184 (437)
210 cd01121 Sms Sms (bacterial rad 97.1 0.0028 6.1E-08 60.7 9.2 86 168-262 81-169 (372)
211 PRK06067 flagellar accessory p 97.1 0.0042 9.1E-08 55.8 9.8 88 168-261 24-130 (234)
212 TIGR02974 phageshock_pspF psp 97.1 0.013 2.9E-07 55.4 13.5 44 150-193 1-46 (329)
213 PF10236 DAP3: Mitochondrial r 97.1 0.033 7.1E-07 52.2 15.9 49 300-348 258-306 (309)
214 COG0541 Ffh Signal recognition 97.1 0.061 1.3E-06 51.5 17.5 58 169-229 100-158 (451)
215 COG2607 Predicted ATPase (AAA+ 97.1 0.0027 5.9E-08 55.4 7.9 46 148-193 60-109 (287)
216 COG0464 SpoVK ATPases of the A 97.1 0.0041 8.9E-08 62.6 10.5 131 168-321 275-425 (494)
217 TIGR01817 nifA Nif-specific re 97.0 0.012 2.5E-07 59.9 13.8 47 147-193 195-243 (534)
218 PRK05541 adenylylsulfate kinas 97.0 0.0013 2.8E-08 56.3 5.9 36 168-206 6-41 (176)
219 PF08423 Rad51: Rad51; InterP 97.0 0.0029 6.2E-08 57.5 8.3 93 168-261 37-143 (256)
220 cd00544 CobU Adenosylcobinamid 97.0 0.00081 1.8E-08 56.9 4.4 81 171-261 1-83 (169)
221 cd03115 SRP The signal recogni 97.0 0.0027 5.9E-08 54.1 7.7 89 171-262 2-93 (173)
222 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0044 9.6E-08 58.1 9.5 94 168-262 95-202 (316)
223 COG1066 Sms Predicted ATP-depe 97.0 0.0051 1.1E-07 58.1 9.6 96 157-262 79-179 (456)
224 PRK15455 PrkA family serine pr 97.0 0.00085 1.8E-08 66.5 4.7 45 149-193 77-127 (644)
225 COG2884 FtsE Predicted ATPase 97.0 0.0062 1.3E-07 51.4 8.9 58 239-296 143-204 (223)
226 COG0572 Udk Uridine kinase [Nu 97.0 0.0027 5.9E-08 55.2 7.0 79 168-252 7-85 (218)
227 PRK10867 signal recognition pa 96.9 0.0041 8.8E-08 60.6 9.0 26 168-193 99-124 (433)
228 cd03247 ABCC_cytochrome_bd The 96.9 0.0053 1.1E-07 52.6 8.8 26 168-193 27-52 (178)
229 COG1102 Cmk Cytidylate kinase 96.9 0.0016 3.6E-08 53.2 5.1 45 171-229 2-46 (179)
230 TIGR00708 cobA cob(I)alamin ad 96.9 0.0035 7.6E-08 52.8 7.3 117 169-290 5-141 (173)
231 TIGR00959 ffh signal recogniti 96.9 0.0046 9.9E-08 60.2 9.1 26 168-193 98-123 (428)
232 PF00485 PRK: Phosphoribulokin 96.9 0.007 1.5E-07 52.7 9.5 82 171-255 1-87 (194)
233 PHA00729 NTP-binding motif con 96.9 0.0012 2.6E-08 58.0 4.6 35 159-193 7-41 (226)
234 PRK13531 regulatory ATPase Rav 96.9 0.0016 3.4E-08 63.6 5.8 44 148-193 20-63 (498)
235 PTZ00494 tuzin-like protein; P 96.9 0.081 1.8E-06 50.9 16.7 165 145-319 368-544 (664)
236 PLN03187 meiotic recombination 96.9 0.014 2.9E-07 55.3 11.7 93 168-261 125-231 (344)
237 PRK14722 flhF flagellar biosyn 96.9 0.0043 9.2E-08 59.1 8.4 88 169-261 137-225 (374)
238 PLN03186 DNA repair protein RA 96.9 0.0098 2.1E-07 56.3 10.7 94 168-262 122-229 (342)
239 KOG0736 Peroxisome assembly fa 96.9 0.012 2.5E-07 59.8 11.6 93 148-263 672-776 (953)
240 cd03238 ABC_UvrA The excision 96.9 0.0063 1.4E-07 51.9 8.6 124 168-303 20-161 (176)
241 KOG0735 AAA+-type ATPase [Post 96.9 0.019 4.1E-07 57.9 12.9 152 169-347 701-872 (952)
242 cd01133 F1-ATPase_beta F1 ATP 96.9 0.006 1.3E-07 55.4 8.9 93 168-262 68-174 (274)
243 TIGR02236 recomb_radA DNA repa 96.9 0.0089 1.9E-07 56.2 10.5 59 168-227 94-155 (310)
244 TIGR03499 FlhF flagellar biosy 96.9 0.0055 1.2E-07 56.6 8.9 87 169-260 194-281 (282)
245 PRK15429 formate hydrogenlyase 96.9 0.025 5.5E-07 59.3 14.7 46 148-193 376-423 (686)
246 PRK04328 hypothetical protein; 96.9 0.0047 1E-07 56.0 8.2 88 168-261 22-138 (249)
247 PRK06547 hypothetical protein; 96.9 0.0017 3.8E-08 55.1 5.0 34 160-193 6-39 (172)
248 KOG0739 AAA+-type ATPase [Post 96.8 0.023 4.9E-07 51.4 11.9 92 148-263 133-237 (439)
249 COG1618 Predicted nucleotide k 96.8 0.0012 2.7E-08 53.9 3.7 24 170-193 6-29 (179)
250 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0015 3.1E-08 56.3 4.4 23 171-193 1-23 (183)
251 PF07728 AAA_5: AAA domain (dy 96.8 0.0031 6.8E-08 51.5 6.1 42 172-219 2-43 (139)
252 PRK05800 cobU adenosylcobinami 96.8 0.00038 8.3E-09 59.0 0.5 83 171-261 3-86 (170)
253 PF12775 AAA_7: P-loop contain 96.8 0.0012 2.5E-08 60.6 3.7 56 158-217 23-78 (272)
254 KOG0738 AAA+-type ATPase [Post 96.8 0.016 3.4E-07 54.4 10.9 44 150-193 214-269 (491)
255 PRK14527 adenylate kinase; Pro 96.8 0.0022 4.7E-08 55.7 5.3 26 168-193 5-30 (191)
256 cd03228 ABCC_MRP_Like The MRP 96.8 0.0083 1.8E-07 51.0 8.7 26 168-193 27-52 (171)
257 PTZ00035 Rad51 protein; Provis 96.8 0.019 4.1E-07 54.4 11.9 94 168-262 117-224 (337)
258 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.5E-08 53.1 3.2 22 172-193 1-22 (129)
259 TIGR02858 spore_III_AA stage I 96.8 0.014 3E-07 53.3 10.6 126 156-292 97-232 (270)
260 PRK04301 radA DNA repair and r 96.8 0.012 2.6E-07 55.5 10.6 94 168-262 101-209 (317)
261 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.011 2.4E-07 52.9 9.8 89 168-262 19-132 (229)
262 PRK07667 uridine kinase; Provi 96.8 0.002 4.3E-08 56.0 4.8 37 157-193 3-41 (193)
263 cd01124 KaiC KaiC is a circadi 96.8 0.0049 1.1E-07 53.1 7.2 45 171-220 1-45 (187)
264 cd03223 ABCD_peroxisomal_ALDP 96.7 0.01 2.2E-07 50.3 8.9 115 168-292 26-151 (166)
265 PRK09270 nucleoside triphospha 96.7 0.012 2.7E-07 52.6 9.9 27 167-193 31-57 (229)
266 KOG3347 Predicted nucleotide k 96.7 0.0039 8.4E-08 50.3 5.8 72 169-253 7-78 (176)
267 PRK11823 DNA repair protein Ra 96.7 0.0051 1.1E-07 60.6 8.0 86 168-262 79-167 (446)
268 KOG0728 26S proteasome regulat 96.7 0.061 1.3E-06 47.4 13.4 165 150-338 148-350 (404)
269 PF13671 AAA_33: AAA domain; P 96.7 0.0015 3.2E-08 53.7 3.5 23 171-193 1-23 (143)
270 PRK08533 flagellar accessory p 96.7 0.011 2.4E-07 52.8 9.3 53 168-226 23-75 (230)
271 KOG0737 AAA+-type ATPase [Post 96.7 0.023 5E-07 52.9 11.3 145 168-345 126-296 (386)
272 PRK08233 hypothetical protein; 96.7 0.0015 3.3E-08 56.1 3.6 25 169-193 3-27 (182)
273 PF13481 AAA_25: AAA domain; P 96.7 0.0067 1.5E-07 52.6 7.6 91 170-262 33-152 (193)
274 PRK11889 flhF flagellar biosyn 96.7 0.0092 2E-07 56.8 8.8 89 168-261 240-330 (436)
275 TIGR00390 hslU ATP-dependent p 96.7 0.0038 8.3E-08 59.8 6.3 46 148-193 12-71 (441)
276 COG1703 ArgK Putative periplas 96.7 0.0024 5.1E-08 57.8 4.6 66 157-223 37-104 (323)
277 PRK05342 clpX ATP-dependent pr 96.7 0.0042 9.2E-08 60.3 6.8 47 147-193 70-132 (412)
278 PRK05986 cob(I)alamin adenolsy 96.7 0.0034 7.4E-08 53.7 5.4 119 168-290 21-159 (191)
279 PRK10463 hydrogenase nickel in 96.7 0.0081 1.8E-07 55.0 8.1 96 160-262 95-195 (290)
280 TIGR01425 SRP54_euk signal rec 96.6 0.0079 1.7E-07 58.3 8.4 26 168-193 99-124 (429)
281 TIGR00064 ftsY signal recognit 96.6 0.013 2.8E-07 53.7 9.5 90 168-261 71-164 (272)
282 TIGR00554 panK_bact pantothena 96.6 0.014 3E-07 53.9 9.6 79 168-251 61-141 (290)
283 COG0488 Uup ATPase components 96.6 0.023 4.9E-07 57.0 11.6 135 168-305 347-511 (530)
284 cd02019 NK Nucleoside/nucleoti 96.6 0.0017 3.7E-08 46.0 2.7 23 171-193 1-23 (69)
285 PF07726 AAA_3: ATPase family 96.6 0.0021 4.6E-08 50.9 3.5 40 172-217 2-41 (131)
286 PRK05973 replicative DNA helic 96.6 0.016 3.4E-07 51.7 9.5 86 168-261 63-157 (237)
287 cd02025 PanK Pantothenate kina 96.6 0.012 2.6E-07 52.2 8.8 23 171-193 1-23 (220)
288 PRK05022 anaerobic nitric oxid 96.6 0.07 1.5E-06 53.9 15.3 47 147-193 186-234 (509)
289 cd03214 ABC_Iron-Siderophores_ 96.6 0.0098 2.1E-07 51.0 7.9 120 168-292 24-161 (180)
290 COG0563 Adk Adenylate kinase a 96.6 0.004 8.6E-08 53.2 5.4 23 171-193 2-24 (178)
291 COG0468 RecA RecA/RadA recombi 96.6 0.012 2.5E-07 53.8 8.6 91 168-262 59-152 (279)
292 PRK12723 flagellar biosynthesi 96.6 0.012 2.6E-07 56.6 9.1 91 168-262 173-265 (388)
293 TIGR01069 mutS2 MutS2 family p 96.6 0.0023 5E-08 67.2 4.5 115 250-373 401-522 (771)
294 PRK14974 cell division protein 96.6 0.021 4.6E-07 53.8 10.5 91 168-262 139-233 (336)
295 PRK06762 hypothetical protein; 96.6 0.002 4.3E-08 54.5 3.4 25 169-193 2-26 (166)
296 TIGR00416 sms DNA repair prote 96.6 0.01 2.3E-07 58.5 8.9 96 158-262 81-181 (454)
297 COG1136 SalX ABC-type antimicr 96.6 0.015 3.3E-07 51.1 8.9 61 241-303 150-215 (226)
298 PTZ00301 uridine kinase; Provi 96.6 0.002 4.4E-08 56.5 3.4 25 169-193 3-27 (210)
299 PF00154 RecA: recA bacterial 96.6 0.013 2.8E-07 54.6 8.8 88 168-263 52-143 (322)
300 PRK09519 recA DNA recombinatio 96.5 0.0082 1.8E-07 62.3 8.1 86 168-261 59-148 (790)
301 PTZ00088 adenylate kinase 1; P 96.5 0.0021 4.6E-08 57.2 3.4 23 171-193 8-30 (229)
302 PRK05439 pantothenate kinase; 96.5 0.023 4.9E-07 52.9 10.2 83 167-252 84-166 (311)
303 TIGR01360 aden_kin_iso1 adenyl 96.5 0.0022 4.7E-08 55.4 3.4 26 168-193 2-27 (188)
304 PRK12726 flagellar biosynthesi 96.5 0.016 3.5E-07 54.9 9.2 90 168-262 205-296 (407)
305 PRK05480 uridine/cytidine kina 96.5 0.0025 5.4E-08 56.2 3.7 26 168-193 5-30 (209)
306 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0049 1.1E-07 49.6 5.0 39 155-193 6-46 (133)
307 PF06745 KaiC: KaiC; InterPro 96.5 0.0097 2.1E-07 53.1 7.5 90 168-262 18-126 (226)
308 TIGR00764 lon_rel lon-related 96.5 0.0089 1.9E-07 61.2 8.1 74 148-226 18-91 (608)
309 PF03308 ArgK: ArgK protein; 96.5 0.0037 8.1E-08 55.7 4.6 63 156-219 14-78 (266)
310 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.021 4.5E-07 52.1 9.7 40 168-210 35-74 (259)
311 COG4608 AppF ABC-type oligopep 96.5 0.018 3.9E-07 51.7 8.9 125 168-296 38-177 (268)
312 PRK13765 ATP-dependent proteas 96.5 0.0053 1.2E-07 62.8 6.3 74 148-226 31-104 (637)
313 TIGR02655 circ_KaiC circadian 96.5 0.016 3.5E-07 58.0 9.6 99 158-262 250-364 (484)
314 KOG0727 26S proteasome regulat 96.5 0.079 1.7E-06 46.8 12.4 44 150-193 157-213 (408)
315 COG0465 HflB ATP-dependent Zn 96.4 0.036 7.9E-07 55.7 11.7 173 148-347 150-357 (596)
316 PF08433 KTI12: Chromatin asso 96.4 0.0079 1.7E-07 55.0 6.7 25 170-194 2-26 (270)
317 PF00910 RNA_helicase: RNA hel 96.4 0.002 4.3E-08 50.1 2.3 22 172-193 1-22 (107)
318 TIGR00235 udk uridine kinase. 96.4 0.0028 6.1E-08 55.8 3.5 26 168-193 5-30 (207)
319 COG0714 MoxR-like ATPases [Gen 96.4 0.0086 1.9E-07 56.8 7.0 67 148-222 24-90 (329)
320 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.022 4.7E-07 51.0 9.0 123 168-292 29-202 (254)
321 COG1419 FlhF Flagellar GTP-bin 96.4 0.028 6E-07 53.5 10.1 101 156-261 186-291 (407)
322 PRK05201 hslU ATP-dependent pr 96.4 0.0076 1.7E-07 57.9 6.4 47 147-193 14-74 (443)
323 PF01583 APS_kinase: Adenylyls 96.4 0.0038 8.2E-08 51.7 3.8 25 169-193 2-26 (156)
324 PRK03839 putative kinase; Prov 96.4 0.0027 5.8E-08 54.5 3.1 23 171-193 2-24 (180)
325 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.016 3.4E-07 47.8 7.5 26 168-193 25-50 (144)
326 cd01129 PulE-GspE PulE/GspE Th 96.4 0.014 2.9E-07 53.4 7.7 104 151-267 62-165 (264)
327 cd03230 ABC_DR_subfamily_A Thi 96.4 0.023 4.9E-07 48.4 8.6 26 168-193 25-50 (173)
328 COG4088 Predicted nucleotide k 96.4 0.0016 3.5E-08 55.4 1.5 24 170-193 2-25 (261)
329 cd03246 ABCC_Protease_Secretio 96.4 0.014 3E-07 49.8 7.3 26 168-193 27-52 (173)
330 PF00006 ATP-synt_ab: ATP synt 96.3 0.024 5.3E-07 49.8 8.9 87 168-261 14-115 (215)
331 cd02028 UMPK_like Uridine mono 96.3 0.0085 1.8E-07 51.3 5.9 23 171-193 1-23 (179)
332 PRK06217 hypothetical protein; 96.3 0.007 1.5E-07 52.1 5.4 23 171-193 3-25 (183)
333 TIGR00382 clpX endopeptidase C 96.3 0.012 2.7E-07 56.9 7.5 47 147-193 76-140 (413)
334 cd03216 ABC_Carb_Monos_I This 96.3 0.0097 2.1E-07 50.2 6.1 114 168-292 25-145 (163)
335 cd01125 repA Hexameric Replica 96.3 0.03 6.5E-07 50.5 9.6 23 171-193 3-25 (239)
336 PRK00279 adk adenylate kinase; 96.3 0.0058 1.3E-07 54.1 4.9 23 171-193 2-24 (215)
337 cd03281 ABC_MSH5_euk MutS5 hom 96.3 0.0034 7.3E-08 55.5 3.3 23 169-191 29-51 (213)
338 PRK04040 adenylate kinase; Pro 96.3 0.0037 8E-08 54.0 3.5 46 170-227 3-48 (188)
339 TIGR01420 pilT_fam pilus retra 96.3 0.0064 1.4E-07 57.9 5.4 112 168-291 121-232 (343)
340 PRK00131 aroK shikimate kinase 96.3 0.0038 8.2E-08 53.1 3.5 25 169-193 4-28 (175)
341 KOG1051 Chaperone HSP104 and r 96.3 0.023 4.9E-07 59.7 9.6 101 149-263 563-672 (898)
342 COG0467 RAD55 RecA-superfamily 96.3 0.01 2.2E-07 54.3 6.4 89 167-261 21-134 (260)
343 PRK12678 transcription termina 96.3 0.0069 1.5E-07 60.1 5.5 98 160-261 406-513 (672)
344 PRK12724 flagellar biosynthesi 96.2 0.017 3.7E-07 55.6 8.0 25 169-193 223-247 (432)
345 PRK14721 flhF flagellar biosyn 96.2 0.031 6.6E-07 54.3 9.7 25 169-193 191-215 (420)
346 PRK07132 DNA polymerase III su 96.2 0.33 7E-06 45.2 16.1 160 157-343 5-177 (299)
347 CHL00081 chlI Mg-protoporyphyr 96.2 0.0057 1.2E-07 57.8 4.5 46 148-193 17-62 (350)
348 cd02027 APSK Adenosine 5'-phos 96.2 0.022 4.9E-07 47.1 7.6 23 171-193 1-23 (149)
349 PRK00625 shikimate kinase; Pro 96.2 0.0038 8.1E-08 53.1 3.0 23 171-193 2-24 (173)
350 PRK15453 phosphoribulokinase; 96.2 0.043 9.3E-07 50.0 9.7 80 168-250 4-89 (290)
351 COG0396 sufC Cysteine desulfur 96.2 0.025 5.4E-07 49.4 7.8 60 240-301 151-216 (251)
352 TIGR02030 BchI-ChlI magnesium 96.2 0.0076 1.6E-07 56.9 5.1 46 148-193 4-49 (337)
353 TIGR01351 adk adenylate kinase 96.2 0.0069 1.5E-07 53.4 4.6 22 172-193 2-23 (210)
354 PF00625 Guanylate_kin: Guanyl 96.1 0.0085 1.8E-07 51.6 4.9 38 169-209 2-39 (183)
355 PRK06995 flhF flagellar biosyn 96.1 0.027 5.8E-07 55.6 8.8 59 169-228 256-315 (484)
356 cd03369 ABCC_NFT1 Domain 2 of 96.1 0.059 1.3E-06 47.3 10.3 26 168-193 33-58 (207)
357 PRK05703 flhF flagellar biosyn 96.1 0.021 4.7E-07 55.8 8.0 88 169-261 221-309 (424)
358 PF13245 AAA_19: Part of AAA d 96.1 0.0079 1.7E-07 43.4 3.8 26 168-193 9-34 (76)
359 PRK13407 bchI magnesium chelat 96.1 0.007 1.5E-07 57.0 4.4 46 148-193 8-53 (334)
360 cd00227 CPT Chloramphenicol (C 96.1 0.0054 1.2E-07 52.4 3.4 24 170-193 3-26 (175)
361 TIGR03575 selen_PSTK_euk L-ser 96.1 0.021 4.5E-07 53.8 7.5 22 172-193 2-23 (340)
362 PRK12597 F0F1 ATP synthase sub 96.1 0.036 7.8E-07 54.4 9.4 92 168-261 142-247 (461)
363 PRK06002 fliI flagellum-specif 96.1 0.02 4.3E-07 55.8 7.5 90 168-262 164-265 (450)
364 PRK14528 adenylate kinase; Pro 96.1 0.0092 2E-07 51.5 4.8 24 170-193 2-25 (186)
365 PRK14723 flhF flagellar biosyn 96.1 0.047 1E-06 56.7 10.5 25 169-193 185-209 (767)
366 cd02021 GntK Gluconate kinase 96.1 0.0047 1E-07 51.2 2.8 23 171-193 1-23 (150)
367 COG3854 SpoIIIAA ncharacterize 96.1 0.021 4.7E-07 49.7 6.8 125 160-295 128-259 (308)
368 PF00158 Sigma54_activat: Sigm 96.0 0.012 2.5E-07 49.9 5.2 44 150-193 1-46 (168)
369 PF06309 Torsin: Torsin; Inte 96.0 0.031 6.8E-07 44.2 7.2 45 149-193 26-77 (127)
370 cd02024 NRK1 Nicotinamide ribo 96.0 0.0047 1E-07 53.1 2.8 23 171-193 1-23 (187)
371 PRK08972 fliI flagellum-specif 96.0 0.014 3E-07 56.6 6.2 90 168-262 161-263 (444)
372 PF03266 NTPase_1: NTPase; In 96.0 0.005 1.1E-07 52.1 2.8 22 172-193 2-23 (168)
373 TIGR02322 phosphon_PhnN phosph 96.0 0.0057 1.2E-07 52.4 3.3 24 170-193 2-25 (179)
374 PRK00409 recombination and DNA 96.0 0.051 1.1E-06 57.5 10.8 178 168-373 326-527 (782)
375 cd03222 ABC_RNaseL_inhibitor T 96.0 0.053 1.2E-06 46.2 9.1 26 168-193 24-49 (177)
376 PF13086 AAA_11: AAA domain; P 96.0 0.014 3.1E-07 52.0 5.9 64 158-223 8-75 (236)
377 cd02023 UMPK Uridine monophosp 96.0 0.0048 1E-07 53.9 2.8 23 171-193 1-23 (198)
378 PF03205 MobB: Molybdopterin g 96.0 0.0066 1.4E-07 49.7 3.3 39 170-210 1-39 (140)
379 cd01122 GP4d_helicase GP4d_hel 96.0 0.067 1.5E-06 49.2 10.4 53 168-224 29-81 (271)
380 COG1936 Predicted nucleotide k 96.0 0.0054 1.2E-07 51.0 2.7 20 171-190 2-21 (180)
381 PRK14530 adenylate kinase; Pro 96.0 0.0058 1.3E-07 54.1 3.1 24 170-193 4-27 (215)
382 PRK05922 type III secretion sy 96.0 0.023 5.1E-07 55.2 7.4 91 167-262 155-258 (434)
383 TIGR03498 FliI_clade3 flagella 96.0 0.043 9.4E-07 53.3 9.3 90 168-262 139-241 (418)
384 COG1428 Deoxynucleoside kinase 96.0 0.014 3.1E-07 50.2 5.3 48 169-222 4-51 (216)
385 cd01135 V_A-ATPase_B V/A-type 96.0 0.046 1E-06 49.7 8.8 95 168-262 68-177 (276)
386 PRK00889 adenylylsulfate kinas 96.0 0.0074 1.6E-07 51.5 3.7 26 168-193 3-28 (175)
387 smart00534 MUTSac ATPase domai 95.9 0.0027 5.9E-08 54.8 0.9 20 171-190 1-20 (185)
388 cd02020 CMPK Cytidine monophos 95.9 0.0055 1.2E-07 50.5 2.7 23 171-193 1-23 (147)
389 TIGR01650 PD_CobS cobaltochela 95.9 0.025 5.3E-07 52.8 7.2 63 148-218 45-107 (327)
390 COG3640 CooC CO dehydrogenase 95.9 0.014 3E-07 51.0 5.2 41 171-213 2-42 (255)
391 cd01130 VirB11-like_ATPase Typ 95.9 0.0074 1.6E-07 52.1 3.5 102 157-268 14-117 (186)
392 PRK08927 fliI flagellum-specif 95.9 0.065 1.4E-06 52.2 10.1 90 168-262 157-259 (442)
393 PRK10416 signal recognition pa 95.9 0.061 1.3E-06 50.5 9.8 26 168-193 113-138 (318)
394 PF03029 ATP_bind_1: Conserved 95.9 0.01 2.2E-07 53.3 4.4 34 174-210 1-34 (238)
395 PF01078 Mg_chelatase: Magnesi 95.9 0.013 2.9E-07 50.7 4.9 44 148-193 3-46 (206)
396 KOG1970 Checkpoint RAD17-RFC c 95.9 0.024 5.2E-07 55.5 7.0 40 154-193 88-134 (634)
397 cd01136 ATPase_flagellum-secre 95.9 0.089 1.9E-06 49.3 10.7 90 168-262 68-170 (326)
398 cd02029 PRK_like Phosphoribulo 95.9 0.043 9.3E-07 49.5 8.1 79 171-252 1-85 (277)
399 PRK14529 adenylate kinase; Pro 95.9 0.035 7.5E-07 49.2 7.5 82 172-262 3-87 (223)
400 COG3598 RepA RecA-family ATPas 95.8 0.025 5.5E-07 51.7 6.6 59 171-229 91-157 (402)
401 PRK09280 F0F1 ATP synthase sub 95.8 0.061 1.3E-06 52.7 9.8 92 168-261 143-248 (463)
402 PRK08149 ATP synthase SpaL; Va 95.8 0.038 8.3E-07 53.6 8.4 90 168-262 150-252 (428)
403 PRK13949 shikimate kinase; Pro 95.8 0.0071 1.5E-07 51.3 3.0 23 171-193 3-25 (169)
404 COG5635 Predicted NTPase (NACH 95.8 0.01 2.3E-07 63.3 4.9 196 170-372 223-448 (824)
405 PF08298 AAA_PrkA: PrkA AAA do 95.8 0.013 2.9E-07 54.7 4.9 46 148-193 61-112 (358)
406 COG1643 HrpA HrpA-like helicas 95.8 0.048 1E-06 57.3 9.5 144 154-302 52-221 (845)
407 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.074 1.6E-06 59.9 11.2 26 168-193 1629-1654(2281)
408 PLN02165 adenylate isopentenyl 95.8 0.01 2.2E-07 55.4 4.1 29 165-193 39-67 (334)
409 PRK09302 circadian clock prote 95.8 0.056 1.2E-06 54.6 9.9 89 168-262 272-374 (509)
410 PRK13947 shikimate kinase; Pro 95.8 0.0078 1.7E-07 51.1 3.2 23 171-193 3-25 (171)
411 PF14532 Sigma54_activ_2: Sigm 95.8 0.011 2.4E-07 48.3 3.9 43 151-193 1-45 (138)
412 TIGR03263 guanyl_kin guanylate 95.8 0.0077 1.7E-07 51.6 3.1 24 170-193 2-25 (180)
413 PF08477 Miro: Miro-like prote 95.8 0.0083 1.8E-07 47.4 3.1 22 172-193 2-23 (119)
414 PRK10751 molybdopterin-guanine 95.8 0.009 1.9E-07 50.5 3.4 26 168-193 5-30 (173)
415 KOG0652 26S proteasome regulat 95.8 0.37 8E-06 42.9 13.3 46 148-193 171-229 (424)
416 PF03969 AFG1_ATPase: AFG1-lik 95.8 0.011 2.3E-07 56.5 4.3 76 169-261 62-137 (362)
417 KOG0729 26S proteasome regulat 95.8 0.06 1.3E-06 47.9 8.4 89 150-262 179-281 (435)
418 PRK12339 2-phosphoglycerate ki 95.8 0.0095 2.1E-07 51.8 3.6 25 169-193 3-27 (197)
419 TIGR00073 hypB hydrogenase acc 95.8 0.011 2.3E-07 52.1 4.0 30 164-193 17-46 (207)
420 PRK10875 recD exonuclease V su 95.8 0.018 3.9E-07 58.9 6.0 54 169-222 167-220 (615)
421 PF05970 PIF1: PIF1-like helic 95.8 0.025 5.4E-07 54.4 6.7 38 156-193 9-46 (364)
422 cd03287 ABC_MSH3_euk MutS3 hom 95.8 0.0051 1.1E-07 54.5 1.8 111 168-295 30-160 (222)
423 cd01132 F1_ATPase_alpha F1 ATP 95.7 0.054 1.2E-06 49.2 8.3 90 168-262 68-172 (274)
424 cd00071 GMPK Guanosine monopho 95.7 0.0093 2E-07 48.6 3.2 23 171-193 1-23 (137)
425 TIGR00041 DTMP_kinase thymidyl 95.7 0.023 5E-07 49.3 5.9 24 170-193 4-27 (195)
426 cd00267 ABC_ATPase ABC (ATP-bi 95.7 0.03 6.5E-07 46.8 6.3 118 168-294 24-145 (157)
427 cd00046 DEXDc DEAD-like helica 95.7 0.026 5.7E-07 45.4 5.9 36 171-207 2-37 (144)
428 PF02374 ArsA_ATPase: Anion-tr 95.7 0.012 2.6E-07 54.9 4.3 46 170-218 2-47 (305)
429 cd00984 DnaB_C DnaB helicase C 95.7 0.068 1.5E-06 48.2 9.1 51 168-222 12-62 (242)
430 TIGR01313 therm_gnt_kin carboh 95.7 0.0072 1.6E-07 50.9 2.5 22 172-193 1-22 (163)
431 PRK05917 DNA polymerase III su 95.7 0.35 7.5E-06 44.6 13.5 38 156-193 5-43 (290)
432 PRK00300 gmk guanylate kinase; 95.7 0.01 2.2E-07 52.0 3.5 26 168-193 4-29 (205)
433 cd01672 TMPK Thymidine monopho 95.7 0.023 5.1E-07 49.3 5.8 23 171-193 2-24 (200)
434 PRK09099 type III secretion sy 95.7 0.067 1.4E-06 52.3 9.3 92 167-262 161-264 (441)
435 PTZ00185 ATPase alpha subunit; 95.7 0.066 1.4E-06 52.7 9.1 95 168-262 188-300 (574)
436 cd00464 SK Shikimate kinase (S 95.7 0.0089 1.9E-07 49.7 2.9 22 172-193 2-23 (154)
437 COG0529 CysC Adenylylsulfate k 95.7 0.018 3.8E-07 48.1 4.5 30 164-193 18-47 (197)
438 cd03213 ABCG_EPDR ABCG transpo 95.6 0.042 9.1E-07 47.7 7.2 26 168-193 34-59 (194)
439 PRK11388 DNA-binding transcrip 95.6 0.16 3.5E-06 52.9 12.7 46 148-193 325-372 (638)
440 KOG1532 GTPase XAB1, interacts 95.6 0.013 2.7E-07 52.3 3.8 60 168-230 18-88 (366)
441 PF03193 DUF258: Protein of un 95.6 0.019 4.2E-07 47.8 4.7 36 155-193 24-59 (161)
442 PLN02200 adenylate kinase fami 95.6 0.011 2.4E-07 52.9 3.6 25 169-193 43-67 (234)
443 PRK13975 thymidylate kinase; P 95.6 0.01 2.2E-07 51.6 3.3 24 170-193 3-26 (196)
444 COG0003 ArsA Predicted ATPase 95.6 0.021 4.5E-07 53.4 5.3 47 169-218 2-48 (322)
445 PRK06761 hypothetical protein; 95.6 0.025 5.4E-07 51.8 5.7 24 170-193 4-27 (282)
446 COG4240 Predicted kinase [Gene 95.6 0.066 1.4E-06 46.6 7.8 85 167-253 48-135 (300)
447 PRK06936 type III secretion sy 95.6 0.1 2.2E-06 50.9 10.0 90 168-262 161-263 (439)
448 PRK09302 circadian clock prote 95.6 0.05 1.1E-06 55.0 8.4 90 168-262 30-141 (509)
449 PRK14737 gmk guanylate kinase; 95.6 0.013 2.7E-07 50.6 3.6 26 168-193 3-28 (186)
450 KOG0726 26S proteasome regulat 95.5 0.057 1.2E-06 48.8 7.5 45 149-193 186-243 (440)
451 PRK09435 membrane ATPase/prote 95.5 0.032 7E-07 52.5 6.4 36 158-193 43-80 (332)
452 TIGR03305 alt_F1F0_F1_bet alte 95.5 0.09 2E-06 51.4 9.6 93 168-262 137-243 (449)
453 PHA02244 ATPase-like protein 95.5 0.032 6.8E-07 52.8 6.2 44 148-193 96-143 (383)
454 cd03282 ABC_MSH4_euk MutS4 hom 95.5 0.061 1.3E-06 47.1 7.7 120 168-296 28-158 (204)
455 PRK14532 adenylate kinase; Pro 95.5 0.011 2.3E-07 51.2 3.0 22 172-193 3-24 (188)
456 PHA02774 E1; Provisional 95.5 0.033 7.1E-07 55.6 6.6 48 156-208 420-468 (613)
457 PF13521 AAA_28: AAA domain; P 95.5 0.011 2.3E-07 49.9 2.8 21 172-192 2-22 (163)
458 PRK06793 fliI flagellum-specif 95.5 0.098 2.1E-06 50.9 9.7 93 167-263 154-258 (432)
459 PRK05057 aroK shikimate kinase 95.5 0.013 2.9E-07 49.8 3.4 24 170-193 5-28 (172)
460 PF13604 AAA_30: AAA domain; P 95.5 0.023 5E-07 49.5 4.9 36 158-193 7-42 (196)
461 cd01428 ADK Adenylate kinase ( 95.5 0.011 2.5E-07 51.2 3.0 22 172-193 2-23 (194)
462 TIGR01039 atpD ATP synthase, F 95.5 0.052 1.1E-06 53.0 7.7 93 168-262 142-248 (461)
463 PRK03846 adenylylsulfate kinas 95.5 0.015 3.2E-07 50.8 3.6 27 167-193 22-48 (198)
464 PF09848 DUF2075: Uncharacteri 95.5 0.063 1.4E-06 51.4 8.3 41 170-211 2-42 (352)
465 PRK14531 adenylate kinase; Pro 95.5 0.012 2.7E-07 50.5 3.2 24 170-193 3-26 (183)
466 KOG2170 ATPase of the AAA+ sup 95.4 0.033 7.1E-07 50.5 5.8 100 149-263 83-190 (344)
467 PRK10078 ribose 1,5-bisphospho 95.4 0.012 2.7E-07 50.7 3.1 24 170-193 3-26 (186)
468 COG2019 AdkA Archaeal adenylat 95.4 0.014 3.1E-07 48.1 3.2 48 169-229 4-51 (189)
469 TIGR02868 CydC thiol reductant 95.4 0.088 1.9E-06 53.5 9.7 27 167-193 359-385 (529)
470 PRK07196 fliI flagellum-specif 95.4 0.062 1.3E-06 52.3 8.0 27 167-193 153-179 (434)
471 PRK05688 fliI flagellum-specif 95.4 0.1 2.2E-06 51.0 9.4 90 168-262 167-269 (451)
472 COG1158 Rho Transcription term 95.4 0.17 3.6E-06 46.7 10.0 104 156-261 159-270 (422)
473 cd00820 PEPCK_HprK Phosphoenol 95.4 0.016 3.4E-07 44.7 3.1 22 169-190 15-36 (107)
474 PRK13948 shikimate kinase; Pro 95.4 0.018 3.9E-07 49.3 3.8 26 168-193 9-34 (182)
475 TIGR03574 selen_PSTK L-seryl-t 95.3 0.011 2.4E-07 53.6 2.7 23 171-193 1-23 (249)
476 COG1124 DppF ABC-type dipeptid 95.3 0.024 5.1E-07 49.9 4.4 26 168-193 32-57 (252)
477 PRK14738 gmk guanylate kinase; 95.3 0.017 3.6E-07 50.8 3.6 25 168-192 12-36 (206)
478 TIGR02546 III_secr_ATP type II 95.3 0.16 3.5E-06 49.6 10.7 90 167-261 143-245 (422)
479 COG1224 TIP49 DNA helicase TIP 95.3 0.08 1.7E-06 49.3 7.9 56 145-201 36-96 (450)
480 COG2842 Uncharacterized ATPase 95.3 0.15 3.2E-06 46.4 9.5 105 147-263 71-177 (297)
481 TIGR01041 ATP_syn_B_arch ATP s 95.3 0.057 1.2E-06 53.0 7.5 94 168-262 140-249 (458)
482 KOG0651 26S proteasome regulat 95.3 0.037 7.9E-07 50.4 5.6 26 168-193 165-190 (388)
483 PRK13946 shikimate kinase; Pro 95.3 0.016 3.5E-07 49.9 3.3 25 169-193 10-34 (184)
484 PRK04182 cytidylate kinase; Pr 95.3 0.016 3.4E-07 49.6 3.2 23 171-193 2-24 (180)
485 COG0488 Uup ATPase components 95.3 0.08 1.7E-06 53.2 8.5 25 169-193 29-53 (530)
486 PRK07594 type III secretion sy 95.3 0.088 1.9E-06 51.3 8.5 91 167-262 153-256 (433)
487 PRK07276 DNA polymerase III su 95.2 0.93 2E-05 41.9 14.8 67 250-317 103-173 (290)
488 TIGR02173 cyt_kin_arch cytidyl 95.2 0.017 3.6E-07 49.0 3.2 23 171-193 2-24 (171)
489 COG2401 ABC-type ATPase fused 95.2 0.017 3.7E-07 54.6 3.4 151 151-301 374-580 (593)
490 TIGR01287 nifH nitrogenase iro 95.2 0.02 4.4E-07 52.8 3.9 25 170-194 1-25 (275)
491 TIGR03496 FliI_clade1 flagella 95.2 0.14 3E-06 49.8 9.6 89 168-261 136-237 (411)
492 KOG0924 mRNA splicing factor A 95.2 0.11 2.4E-06 52.2 8.9 134 156-298 360-522 (1042)
493 TIGR01040 V-ATPase_V1_B V-type 95.2 0.088 1.9E-06 51.3 8.2 94 168-261 140-257 (466)
494 PRK06731 flhF flagellar biosyn 95.2 0.13 2.7E-06 47.1 8.8 90 168-262 74-165 (270)
495 TIGR00750 lao LAO/AO transport 95.1 0.039 8.5E-07 51.5 5.7 27 167-193 32-58 (300)
496 PF06068 TIP49: TIP49 C-termin 95.1 0.034 7.3E-07 52.3 5.1 47 147-193 23-74 (398)
497 PF02367 UPF0079: Uncharacteri 95.1 0.04 8.7E-07 43.7 4.8 26 168-193 14-39 (123)
498 COG0194 Gmk Guanylate kinase [ 95.1 0.022 4.8E-07 48.1 3.5 25 169-193 4-28 (191)
499 smart00072 GuKc Guanylate kina 95.1 0.025 5.5E-07 48.7 4.0 25 169-193 2-26 (184)
500 PF00005 ABC_tran: ABC transpo 95.1 0.02 4.3E-07 46.5 3.2 25 169-193 11-35 (137)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-63 Score=513.44 Aligned_cols=407 Identities=43% Similarity=0.757 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH-----
Q 042645 12 DDTISRCLDCIVSQTGYICHLKDNLDALRTEFQKLIEARNDVLIRVTVAEQRQMRRLQQVQGWLSRVQDVEEEVR----- 86 (427)
Q Consensus 12 ~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~v~~wl~~v~~~~~~~~----- 86 (427)
+..++++.+.+.+++..+.+.++.+..|++++..|++++.|+++.-. ....+..|...++++.|+++
T Consensus 6 s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~--------~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 6 SFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRD--------DLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred EEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888899999999999999999999999999999998653321 12445566666666666555
Q ss_pred -----------------HhhhhhhhccCccCCCchhhhhHHHHHHHHHHHHHHHHhcCCCccccc-cCCCCCCCCCCCCC
Q 042645 87 -----------------RREQEVICLDGLRYRSSIKSYKYGKRVVKSLKNVQGLRKEGDFKDVAQ-TVPENPVDERPLPP 148 (427)
Q Consensus 87 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 148 (427)
....+..|....|.......|.+++++.++.+.++.+..++.|..... ..|......+|..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQS 157 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCc
Confidence 112334455566667777888899999999999999888776766554 22222333333333
Q ss_pred cc-ccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 149 TV-VGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 149 ~~-vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
.. ||.+..++++.+.|.+++..+++|+||||+||||||++++|+...+..+|+.++||+||+.++...++.+|+..++.
T Consensus 158 ~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 158 ESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGL 237 (889)
T ss_pred cccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhcc
Confidence 33 99999999999999998889999999999999999999999994489999999999999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhh-cCCCcceeccCC
Q 042645 228 YNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGL-MDAHKSFKVECL 306 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~-~~~~~~~~l~~L 306 (427)
..........+++...|.+.|++|||||||||||+..+|+.+..++|....||+|++|||+..||.. +++...+++..|
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L 317 (889)
T KOG4658|consen 238 LDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECL 317 (889)
T ss_pred CCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccccc
Confidence 6655555556889999999999999999999999999999999999999899999999999999998 888889999999
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhhc-cccCCCChHHH
Q 042645 307 GYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRSS-ASKFSGMEKKA 385 (427)
Q Consensus 307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~-~~~~~~~~~~~ 385 (427)
+++|||.||++.++.......+.++++|++++++|+|+|||++++|++|+.+.+..+|+++.+.+.+. ..+.+++.+.+
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i 397 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESI 397 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhh
Confidence 99999999999998876566677999999999999999999999999999999999999999999888 66667778899
Q ss_pred HHHHhhhcCCCCCChHhHHHhhhcCCCCCccccHHHHHhhcC
Q 042645 386 LSRLKFSYDFLPSNETRFCLLYCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 386 ~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~Wi 427 (427)
+.+|.+||++||+ ++|.||+|||+||+||.|+++.||.+||
T Consensus 398 ~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWi 438 (889)
T KOG4658|consen 398 LPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWI 438 (889)
T ss_pred HHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHH
Confidence 9999999999996 9999999999999999999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-48 Score=364.03 Aligned_cols=273 Identities=35% Similarity=0.629 Sum_probs=227.2
Q ss_pred chhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042645 153 MQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE 230 (427)
Q Consensus 153 R~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 230 (427)
||.++++|.+.|.+ ++.++|+|+|+||+||||||..++++. ....+|+.++|+.++...+..+++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 78999999999988 789999999999999999999999985 357899999999999999999999999999988754
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhhcCC-CcceeccCCCh
Q 042645 231 SW-DNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGLMDA-HKSFKVECLGY 308 (427)
Q Consensus 231 ~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~-~~~~~l~~L~~ 308 (427)
.. ...+..+....+.+.|+++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33 56677889999999999999999999999999998888888777789999999999998876654 67899999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhhccccCCCChHHHHHH
Q 042645 309 EDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRSSASKFSGMEKKALSR 388 (427)
Q Consensus 309 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 388 (427)
+|+++||.+.++......++...+.+++|+++|+|+||||.++|++|+.+.+..+|+.+++.+.....+..+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765422345556779999999999999999999999776678899999999888765554455799999
Q ss_pred HhhhcCCCCCChHhHHHhhhcCCCCCccccHHHHHhhcC
Q 042645 389 LKFSYDFLPSNETRFCLLYCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 389 l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~Wi 427 (427)
+.+||+.||+ ++|.||+|||+||+++.|+++.|+++|+
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~ 277 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWV 277 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHT
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHH
Confidence 9999999999 8999999999999999999999999996
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.5e-34 Score=313.19 Aligned_cols=257 Identities=19% Similarity=0.267 Sum_probs=204.5
Q ss_pred CCccccchhhHHHHHHHhc--cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe---CCC----------
Q 042645 147 PPTVVGMQSTLDRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV---SRD---------- 211 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---~~~---------- 211 (427)
.+.+|||+..++++..+|. .++.++|+|+||||+||||||+.+|+.. ..+|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 3578999999999999885 3578999999999999999999999987 567888777642 111
Q ss_pred -CC-HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCCh
Q 042645 212 -LQ-LGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREF 289 (427)
Q Consensus 212 -~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~ 289 (427)
+. ...+...++..+..... ..... ...+++.|+++|+||||||||+...|+.+.......++|++||||||+.
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~-~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKD-IKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCC-cccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 00 12234444444321110 01111 2456788999999999999999888888866555567899999999999
Q ss_pred hHHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHH
Q 042645 290 EVCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIE 369 (427)
Q Consensus 290 ~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~ 369 (427)
.++..++..+.|+++.|++++||+||+.+++... ..+..+.+++++|+++|+|+|||++++|+.|+. ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9988777778999999999999999999998754 334567899999999999999999999999998 57899999999
Q ss_pred HHhhccccCCCChHHHHHHHhhhcCCCCCChHhHHHhhhcCCCCCccccH
Q 042645 370 VLRSSASKFSGMEKKALSRLKFSYDFLPSNETRFCLLYCGFFPEDYSISI 419 (427)
Q Consensus 370 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~ 419 (427)
.|+..+ +..+..+|++||+.|+++..|.||+++|+|+.++.++.
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~ 456 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND 456 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH
Confidence 987643 24899999999999987458999999999998876643
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.57 E-value=5.7e-13 Score=129.84 Aligned_cols=205 Identities=17% Similarity=0.147 Sum_probs=131.5
Q ss_pred CCCCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 145 PLPPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 145 ~~~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
..|+.++||++++++|...+.. ...+.+.|+|++|+|||++++.++++.. .....-.++++++....+...++..
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHH
Confidence 3567899999999999998743 3456789999999999999999999872 2222345677777777788899999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCcc---c---ccccccCCCCCCCC--cEEEEecCChh
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELF---D---LAQVGLPVPSRASA--SKVVFTTREFE 290 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~---~---~~~~~~~l~~~~~g--s~IivTtR~~~ 290 (427)
++.++..........+.++....+.+.+. +++.+||||+++... . +..+...+.. ..+ ..+|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99998753222234456777777777775 456899999998653 1 1122111111 122 23566665544
Q ss_pred HHhhcC-------CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc----CCCchHHHHHH
Q 042645 291 VCGLMD-------AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVAREC----GGLPLALITVG 352 (427)
Q Consensus 291 v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~----~G~Plai~~~~ 352 (427)
+..... ....+.+++++.++..+++..++.... ....-..+..+.|++.+ |..+.|+.++-
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 322211 124678999999999999998763211 00011123344444444 44666766654
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.53 E-value=4.8e-12 Score=116.69 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=116.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
.+.+.+.|+|++|+|||||++.+++... . ... ...|+ +....+..+++..++..++.... ..+.......+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 4456899999999999999999998872 1 111 22233 33445778899999999887542 2233333344433
Q ss_pred H-----hcCCcEEEEEeccCCcc--cccccccC---CCCCCCCcEEEEecCChhHHhhcC----------CCcceeccCC
Q 042645 247 T-----MRNRKIVLLLDDIWELF--DLAQVGLP---VPSRASASKVVFTTREFEVCGLMD----------AHKSFKVECL 306 (427)
Q Consensus 247 ~-----L~~k~~LlVlDdv~~~~--~~~~~~~~---l~~~~~gs~IivTtR~~~v~~~~~----------~~~~~~l~~L 306 (427)
. ..+++.+||+||++... .++.+... .........|++|.... ....+. ....+.+++|
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 25788999999998753 23333211 11122233556665542 221111 1245789999
Q ss_pred ChHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 307 GYEDAWRLFEEKVGRDILD-SHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 307 ~~~e~~~lf~~~~~~~~~~-~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
+.+|..+++...+...+.. ...-..+..+.|++.|+|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999998876433211 122345789999999999999999988776
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.53 E-value=7.3e-13 Score=142.91 Aligned_cols=244 Identities=16% Similarity=0.210 Sum_probs=154.6
Q ss_pred CCCCCCccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-CCCCHHHHHHHH
Q 042645 143 ERPLPPTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS-RDLQLGKIQESI 221 (427)
Q Consensus 143 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~l~~~i 221 (427)
+|+.++.++-|...++.+-+. ...+++.|+|++|.||||++..+.+.. + .++|+++. .+.++..+...+
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHH
Confidence 444456788888766666432 367899999999999999999988543 2 58999996 445667777777
Q ss_pred HHHhCCCCCC-----------CCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc--cc-ccccCCCCCCCCcEEEEe
Q 042645 222 AKKIGLYNES-----------WDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD--LA-QVGLPVPSRASASKVVFT 285 (427)
Q Consensus 222 ~~~l~~~~~~-----------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~--~~-~~~~~l~~~~~gs~IivT 285 (427)
+..++..... ....+.......+...+. +.+++|||||++...+ .. .+...+.....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777421111 011222333444444433 6899999999976532 12 222223333456788899
Q ss_pred cCChhHH---hhcCCCcceecc----CCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCC
Q 042645 286 TREFEVC---GLMDAHKSFKVE----CLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASK 358 (427)
Q Consensus 286 tR~~~v~---~~~~~~~~~~l~----~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~ 358 (427)
||...-. ..........+. +|+.+|+.+||....+..- ..+.+..|++.|+|+|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9984321 111112234555 9999999999988765321 23457889999999999999998777553
Q ss_pred CChHHHHHHHHHHhhccccCCCC-hHHHHHHHhh-hcCCCCCChHhHHHhhhcCCC
Q 042645 359 KAPREWAHAIEVLRSSASKFSGM-EKKALSRLKF-SYDFLPSNETRFCLLYCGFFP 412 (427)
Q Consensus 359 ~~~~~w~~~l~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cf~~~s~fp 412 (427)
.... ......+ .+. ...+...|.- .++.||+ ..+.++...|+++
T Consensus 233 ~~~~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~ 278 (903)
T PRK04841 233 NSSL--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR 278 (903)
T ss_pred CCch--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc
Confidence 2210 1111111 111 1245555443 3789999 8999999999997
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.48 E-value=1.9e-13 Score=123.17 Aligned_cols=196 Identities=18% Similarity=0.236 Sum_probs=104.9
Q ss_pred cccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH--------
Q 042645 150 VVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI-------- 221 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i-------- 221 (427)
|+||+.++++|.+++..+..+.+.|+|+.|+|||+|++.+.+... . ..+ .++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~-~~~-~~~y~~~~~~~~-~~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK-E-KGY-KVVYIDFLEESN-ESSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSH-HHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh-h-cCC-cEEEEecccchh-hhHHHHHHHHHHHHH
Confidence 799999999999999887788999999999999999999999872 1 111 233443333322 2222222
Q ss_pred --HHHhCCCCCC--------CCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCcc-ccc-------ccccCCCC--CCCC
Q 042645 222 --AKKIGLYNES--------WDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELF-DLA-------QVGLPVPS--RASA 279 (427)
Q Consensus 222 --~~~l~~~~~~--------~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-~~~-------~~~~~l~~--~~~g 279 (427)
...+....+. ............+.+.+. +++++||+||++... ... .+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 1112111000 011122333344444443 355999999997665 111 11111111 1233
Q ss_pred cEEEEecCChhHHhh--------cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 280 SKVVFTTREFEVCGL--------MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 280 s~IivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
..+++++.+..+... .+....+.+++|+.+++++++...+... ... +...+..++|+..+||+|..|..+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence 445555555544332 1223458999999999999999976443 122 223556799999999999988653
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.48 E-value=1.8e-11 Score=118.10 Aligned_cols=204 Identities=15% Similarity=0.153 Sum_probs=129.3
Q ss_pred CCCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCC---CcEEEEEEeCCCCCHHHHH
Q 042645 146 LPPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPND---FDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 146 ~~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~l~ 218 (427)
.|+.++||++++++|..++.. ...+.+.|+|++|+|||++++.++++....... --..+|+++....+...++
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 356899999999999999863 345679999999999999999999876211111 1245778887777888999
Q ss_pred HHHHHHhC---CCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCcc-cc----cccccCC-CCCC--CCcEEEEe
Q 042645 219 ESIAKKIG---LYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELF-DL----AQVGLPV-PSRA--SASKVVFT 285 (427)
Q Consensus 219 ~~i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-~~----~~~~~~l-~~~~--~gs~IivT 285 (427)
..|+.++. ...+ ....+..+....+.+.+. +++++||||+++... .. ..+.... .... ....+|.+
T Consensus 93 ~~i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 93 VELANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 99999983 3221 123345566666666664 568899999998762 11 1111110 1111 22344555
Q ss_pred cCChhHHhhcC-------CCcceeccCCChHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 286 TREFEVCGLMD-------AHKSFKVECLGYEDAWRLFEEKVGR--DILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 286 tR~~~v~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
|........+. ....+.+++++.+|..+++..++.. .....+++..+.+..++..+.|.|..+..
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~ 245 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID 245 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence 54433211111 1246889999999999999988741 11112233334555677777898865543
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.31 E-value=7.5e-11 Score=118.08 Aligned_cols=245 Identities=18% Similarity=0.194 Sum_probs=160.9
Q ss_pred CCCCccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHH
Q 042645 145 PLPPTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAK 223 (427)
Q Consensus 145 ~~~~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~ 223 (427)
..+...+-|....+.|-+. .+.+.+.|..|+|.|||||+.++.... ..-..+.|.++.. +.++..+...++.
T Consensus 16 ~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHH
Confidence 3355667776554444332 378999999999999999999998733 3445789999865 4578889999988
Q ss_pred HhCCCCCCC-----------CCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc---ccccccCCCCCCCCcEEEEecC
Q 042645 224 KIGLYNESW-----------DNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD---LAQVGLPVPSRASASKVVFTTR 287 (427)
Q Consensus 224 ~l~~~~~~~-----------~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR 287 (427)
.++.-.+.. ...+...+...+..-+. .+++.+||||.+-..+ -..+...+.+...+-..++|||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 887332211 12333445555555444 4789999999875432 1222233344556788999999
Q ss_pred ChhHHhhcC---CCcceec----cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCC
Q 042645 288 EFEVCGLMD---AHKSFKV----ECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKA 360 (427)
Q Consensus 288 ~~~v~~~~~---~~~~~~l----~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~ 360 (427)
+.+-..... ....+++ =.|+.+|+.++|....+.. -...-++.|.+..+|-+-|+.+++=.++.+.+
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 976432211 1122232 3588999999998876432 22344889999999999999999988884434
Q ss_pred hHHHHHHHHHHhhccccCCCChHHHHHHHh-hhcCCCCCChHhHHHhhhcCCCC
Q 042645 361 PREWAHAIEVLRSSASKFSGMEKKALSRLK-FSYDFLPSNETRFCLLYCGFFPE 413 (427)
Q Consensus 361 ~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~-~sy~~L~~~~~k~cf~~~s~fp~ 413 (427)
.+.-- ..+++..+-+...|. --++.||+ ++|.+++.||+++.
T Consensus 243 ~~q~~----------~~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~ 285 (894)
T COG2909 243 AEQSL----------RGLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSR 285 (894)
T ss_pred HHHHh----------hhccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHH
Confidence 32211 122233333444333 45789999 89999999999875
No 10
>PF05729 NACHT: NACHT domain
Probab=99.30 E-value=1.9e-11 Score=103.90 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=90.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCC---CCcEEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPN---DFDFVIWEVVSRDLQLG---KIQESIAKKIGLYNESWDNKSFDEKAQE 243 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~~~ 243 (427)
+++.|+|.+|+||||+++.++..+..... .+...+|.+.+...... .+...+..+..... ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---H
Confidence 57999999999999999999988742221 14566777765543322 34444444433211 11111 2
Q ss_pred HHHH-hcCCcEEEEEeccCCccc---------cccc-ccCCCC-CCCCcEEEEecCChhH---HhhcCCCcceeccCCCh
Q 042645 244 IFKT-MRNRKIVLLLDDIWELFD---------LAQV-GLPVPS-RASASKVVFTTREFEV---CGLMDAHKSFKVECLGY 308 (427)
Q Consensus 244 l~~~-L~~k~~LlVlDdv~~~~~---------~~~~-~~~l~~-~~~gs~IivTtR~~~v---~~~~~~~~~~~l~~L~~ 308 (427)
+... .+.++++||||++++... +..+ ...+.. ..++++++||||.... .........+.+.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 247899999999986533 1111 122222 3568999999999776 33334446789999999
Q ss_pred HHHHHHHHHHh
Q 042645 309 EDAWRLFEEKV 319 (427)
Q Consensus 309 ~e~~~lf~~~~ 319 (427)
++..+++.+.+
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.29 E-value=2.7e-11 Score=114.72 Aligned_cols=239 Identities=17% Similarity=0.128 Sum_probs=128.6
Q ss_pred CccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..|+|+++.++.+...+.. ...+.+.|+|++|+|||+||+.+++... ..+ .++..+. ......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEeccc-ccChHHHHHHH
Confidence 5699999999998877752 3456789999999999999999999872 211 1122111 11122223333
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhhcC--
Q 042645 223 KKIGLYN----ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGLMD-- 296 (427)
Q Consensus 223 ~~l~~~~----~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~-- 296 (427)
..+.... ++.+..+ ....+.+...+.+.+..+++|+..+..... ..++ +.+-|..|++...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHHh
Confidence 3332110 0000001 112223444455555555565543322111 1111 2345666666543322211
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhhccc
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRSSAS 376 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~ 376 (427)
....+.+++++.++..+++.+.+...+...+ .+.+..|++.|+|.|..+..+...+. .|... .....
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~----~~~~~ 237 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQV----KGDGV 237 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHH----cCCCC
Confidence 1346899999999999999998865443332 45689999999999976666554332 11110 00000
Q ss_pred cCCCChHHHHHHHhhhcCCCCCChHhHHHh-hhcCCCCC
Q 042645 377 KFSGMEKKALSRLKFSYDFLPSNETRFCLL-YCGFFPED 414 (427)
Q Consensus 377 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-~~s~fp~~ 414 (427)
-....-......+...+..|++ ..+..+. .+..|+.+
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~ 275 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG 275 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC
Confidence 0000012344455566677776 4555553 55666654
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.27 E-value=2.1e-10 Score=107.78 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..|+|+++.+++|..++.. ...+.+.++|++|+|||+||+.+++... ..+ ..+..+....... +...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPGD-LAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCchh-HHHHH
Confidence 4689999999999888862 3456788999999999999999998872 222 1122111111222 22223
Q ss_pred HHhCCCC----CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhhcC--
Q 042645 223 KKIGLYN----ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGLMD-- 296 (427)
Q Consensus 223 ~~l~~~~----~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~-- 296 (427)
..++... ++.+..+ ....+.+...+.+.+..+|+|+..+...+.. .+ .+.+-|..||+...+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhh
Confidence 3332110 0001111 1223445556666666677766544333321 12 12455666777644322111
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHH
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 354 (427)
....+.+++++.++..+++.+.+....... ..+....|++.|+|.|..+..++..
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~---~~~al~~ia~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEI---EPEAALEIARRSRGTPRIANRLLRR 204 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHHhCCCcchHHHHHHH
Confidence 134578999999999999998886443222 2456889999999999877655543
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.13 E-value=1.4e-09 Score=100.47 Aligned_cols=175 Identities=21% Similarity=0.223 Sum_probs=105.8
Q ss_pred ccccchhhH---HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 149 TVVGMQSTL---DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 149 ~~vGR~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
.+||.+..+ .-|.+.+..+......+||++|+||||||+.+.... ...|. .++...+-..-++
T Consensus 25 e~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~-----~~sAv~~gvkdlr------ 90 (436)
T COG2256 25 EVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFE-----ALSAVTSGVKDLR------ 90 (436)
T ss_pred HhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceE-----EeccccccHHHHH------
Confidence 456655433 233444556788889999999999999999999876 33332 2222211111111
Q ss_pred CCCCCCCCCCCHHHHHHHH-HHHhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEE--ecCChhH---HhhcCC
Q 042645 226 GLYNESWDNKSFDEKAQEI-FKTMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVF--TTREFEV---CGLMDA 297 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~ 297 (427)
...+.- .....+++.+|++|+|+... +-+. .||.-..|.-|+| ||-|... .....-
T Consensus 91 -------------~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 91 -------------EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred -------------HHHHHHHHHHhcCCceEEEEehhhhcChhhhhh---hhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 222222 12234899999999997542 2222 2444566777776 5555443 233345
Q ss_pred CcceeccCCChHHHHHHHHHHhCCCCC--C-CCC-CHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 298 HKSFKVECLGYEDAWRLFEEKVGRDIL--D-SHP-DIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~--~-~~~-~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
..++.+++|+.++...++.+.+..... . ... -..+....|++.++|--.++-....
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE 214 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE 214 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence 578999999999999999994422111 1 111 2245678899999997765544433
No 14
>PRK06893 DNA replication initiation factor; Validated
Probab=99.12 E-value=6.5e-10 Score=99.49 Aligned_cols=155 Identities=11% Similarity=0.137 Sum_probs=96.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+.+.|+|++|+|||+|++.+++.... ....+.|+...... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 4467899999999999999999998721 22344666543110 0000 11111
Q ss_pred hcCCcEEEEEeccCCc---ccccc-cccCCCCC-CCCcEEEE-ecCC---------hhHHhhcCCCcceeccCCChHHHH
Q 042645 248 MRNRKIVLLLDDIWEL---FDLAQ-VGLPVPSR-ASASKVVF-TTRE---------FEVCGLMDAHKSFKVECLGYEDAW 312 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~-~~gs~Iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 312 (427)
+. +.-+|+|||+|.. ..|+. +...+... ..|+.+|| |+.. ..+...+.....+++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 21 3349999999864 33442 22222211 23455554 4443 245555556678899999999999
Q ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 313 RLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 313 ~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
+++++.+....... .+++..-|++.+.|..-.+..+-..|
T Consensus 168 ~iL~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 168 IVLQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99999886443222 35668889999988777666555444
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=4.4e-09 Score=105.84 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=115.0
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..++ .+.+.++|..|+||||+|+.+.+.+... ..+.. ..+..-.....|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe-~~~~~-------~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE-TGVTS-------QPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc-cCCCC-------CCCcccHHHHHHhcCCC
Confidence 468999999999999998765 4466899999999999999998876211 11100 00111111111111000
Q ss_pred C---CCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChhH-H-hhc
Q 042645 227 L---YNESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFEV-C-GLM 295 (427)
Q Consensus 227 ~---~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~v-~-~~~ 295 (427)
. ..+.......++..+.+... ..++.-++|||+++.... +..+...+.......++|+||++.+- . ...
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr 167 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL 167 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh
Confidence 0 00000111222222222221 124556899999987643 55554444444456788887776442 1 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALITVGR 353 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 353 (427)
.-...+.+.+++.++..+.+.+.+..++... ..+....|++.++|... ++.++-.
T Consensus 168 SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 168 SRCLQFNLKQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hheEEEecCCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2335789999999999999999876544322 24568889999998664 5555433
No 16
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-08 Score=96.61 Aligned_cols=193 Identities=13% Similarity=0.214 Sum_probs=130.2
Q ss_pred CCCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 146 LPPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 146 ~~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
.|..+.+|+.+++++...|.. +.+..+.|+|.+|+|||+.++.+.+.........+ +++|++....++.+++..|
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 345689999999999988853 33445999999999999999999999843222232 7899999999999999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccccc--ccccCCCCCC-CCcE--EEEecCChhHHh-
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFDLA--QVGLPVPSRA-SASK--VVFTTREFEVCG- 293 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~~~--~~~~~l~~~~-~gs~--IivTtR~~~v~~- 293 (427)
+.+++.. +..+.+..+....+.+.+. ++.+++|||+++....-. -+...+.... ..++ +|..+-+..+..
T Consensus 94 ~~~~~~~--p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKV--PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCC--CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999722 2245666777778887775 588999999998654332 2211121111 1343 344444443322
Q ss_pred -------hcCCCcceeccCCChHHHHHHHHHHhC---CCCCCCCCCHHHHHHHHHHHcCC
Q 042645 294 -------LMDAHKSFKVECLGYEDAWRLFEEKVG---RDILDSHPDIPELAETVARECGG 343 (427)
Q Consensus 294 -------~~~~~~~~~l~~L~~~e~~~lf~~~~~---~~~~~~~~~~~~~~~~i~~~~~G 343 (427)
.++. ..+..+|.+.+|..+++..++. ..+ ..++..-+++..++..-+|
T Consensus 172 ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 172 LDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESG 229 (366)
T ss_pred hhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCc
Confidence 2222 3488999999999999998873 222 2334444555555555555
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=115.00 Aligned_cols=257 Identities=15% Similarity=0.174 Sum_probs=153.0
Q ss_pred cccchhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC---HHHHHHHHHH
Q 042645 150 VVGMQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ---LGKIQESIAK 223 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~---~~~l~~~i~~ 223 (427)
++||+.+++.|...+.. +...++.+.|..|+|||+|++.|.....+....|-...+-....... ..+.++++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998864 56779999999999999999999988743322222222222222222 2233444444
Q ss_pred Hh-------------------CCCCCC------------------C--CCCCHHH-----HHHHHHHHh-cCCcEEEEEe
Q 042645 224 KI-------------------GLYNES------------------W--DNKSFDE-----KAQEIFKTM-RNRKIVLLLD 258 (427)
Q Consensus 224 ~l-------------------~~~~~~------------------~--~~~~~~~-----~~~~l~~~L-~~k~~LlVlD 258 (427)
++ +..... . .+..... ....+.... +.|+.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111000 0 0000011 111222233 3569999999
Q ss_pred ccC-Cccc-ccccccCCCCCC----CCcEEEEecCChhH----HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCC
Q 042645 259 DIW-ELFD-LAQVGLPVPSRA----SASKVVFTTREFEV----CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHP 328 (427)
Q Consensus 259 dv~-~~~~-~~~~~~~l~~~~----~gs~IivTtR~~~v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~ 328 (427)
|++ -+.. ..-+........ ....|..+...... .........|.|.||+..+...+.....+... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~----~ 237 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK----L 237 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----c
Confidence 994 2211 111111110000 01123322222211 12223446899999999999999999987633 2
Q ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHcCC------CChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCCChHh
Q 042645 329 DIPELAETVARECGGLPLALITVGRAMASK------KAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNETR 402 (427)
Q Consensus 329 ~~~~~~~~i~~~~~G~Plai~~~~~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 402 (427)
...+..+.|+++..|+|+.+..+...+..+ .+...|..-...+. ..+.. +.+...+..-.+.||+ ..|
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~-~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATT-DAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----Cchhh-HHHHHHHHHHHhcCCH-HHH
Confidence 334568999999999999999998888773 44555554222221 22222 2466678888999999 899
Q ss_pred HHHhhhcCCCCCcc
Q 042645 403 FCLLYCGFFPEDYS 416 (427)
Q Consensus 403 ~cf~~~s~fp~~~~ 416 (427)
+.+...|++...|.
T Consensus 312 ~Vl~~AA~iG~~F~ 325 (849)
T COG3899 312 EVLKAAACIGNRFD 325 (849)
T ss_pred HHHHHHHHhCccCC
Confidence 99999999987665
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.07 E-value=2.7e-09 Score=104.11 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=108.1
Q ss_pred CccccchhhHHH---HHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDR---VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..++|++..+.. |.+++..+..+.+.|+|++|+||||||+.+++.. ...| +.++.......-++.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~~~~~ir~ii-- 81 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTSGVKDLREVI-- 81 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccccHHHHHHHH--
Confidence 468999888666 7888877777789999999999999999999876 2222 22222111111111121
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEE--ecCChhH---HhhcC
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKT-MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVF--TTREFEV---CGLMD 296 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~ 296 (427)
...... ..+++.+|++|+++... ..+.+...+. .+..++| ||.+... .....
T Consensus 82 -----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 82 -----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred -----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 111111 14578899999998653 2333333332 2444444 3333221 12222
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
-...+.+.+++.++...++.+.+........+-..+..+.|++.|+|.|..+..+...+
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33678999999999999999876432100112335668889999999998776555443
No 19
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.05 E-value=1.6e-08 Score=102.52 Aligned_cols=173 Identities=13% Similarity=0.106 Sum_probs=108.9
Q ss_pred CCccccchhhHHHHHHHhcc----C-CCeEEEEEecCCCcHHHHHHHHHhhccCC--CCCC--cEEEEEEeCCCCCHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE----E-PVGIVGLYGMGGVGKTTLLTQINNSFLHT--PNDF--DFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~----~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f--~~~~wv~~~~~~~~~~l 217 (427)
|..+.|||+++++|...|.. . ...++.|+|++|.|||++++.|.+.+... .... -.+++|++....++..+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 56789999999999988853 2 23467899999999999999998876311 1111 23577887777788899
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc---CCcEEEEEeccCCcccc--cccccCCC-CCCCCcEEEE--ecCCh
Q 042645 218 QESIAKKIGLYNESWDNKSFDEKAQEIFKTMR---NRKIVLLLDDIWELFDL--AQVGLPVP-SRASASKVVF--TTREF 289 (427)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~~~--~~~~~~l~-~~~~gs~Iiv--TtR~~ 289 (427)
+..|..++....+. ...+..+....+...+. +...+||||+++....- +.+...+. ....+++|+| +|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999988543322 23334455555655542 23469999999854310 11111111 1123444443 34322
Q ss_pred hH--------HhhcCCCcceeccCCChHHHHHHHHHHhCC
Q 042645 290 EV--------CGLMDAHKSFKVECLGYEDAWRLFEEKVGR 321 (427)
Q Consensus 290 ~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 321 (427)
.+ ...+. ...+..+|++.++..+++..++..
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHh
Confidence 22 11111 234677999999999999998853
No 20
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.03 E-value=1.6e-09 Score=97.12 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=103.1
Q ss_pred chhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC
Q 042645 153 MQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW 232 (427)
Q Consensus 153 R~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~ 232 (427)
.+..++.+.+++.....+.+.|+|++|+|||+||+.+++... ......++++++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~------~~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELA------QAD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHH------HhH-----------
Confidence 445677777776556677899999999999999999998862 223344555543221 000
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc---ccc-ccccCCCC-CCCCcEEEEecCChh---------HHhhcCCC
Q 042645 233 DNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF---DLA-QVGLPVPS-RASASKVVFTTREFE---------VCGLMDAH 298 (427)
Q Consensus 233 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~-~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~ 298 (427)
..+...+.+ .-+|||||++... .|. .+...+.. ...+..+|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 2489999998653 222 23222221 122347888887532 22222234
Q ss_pred cceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHH
Q 042645 299 KSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 354 (427)
..+.+++++.++...++...+..... +-..+..+.|.+.+.|+|..+..+...
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 57899999999999999876532221 222455788888899999877766543
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.99 E-value=7e-09 Score=98.92 Aligned_cols=198 Identities=12% Similarity=0.105 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCCCCHHHHHHHHH----
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD-FVIWEVVSRDLQLGKIQESIA---- 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~---- 222 (427)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++... ...+. ..+.++++...+ .....+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 46899999999999999887767789999999999999999998772 11111 233444332110 0000000
Q ss_pred --HHhCCCCCCCCCCCHHHHHHHHH-HH---h--cCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-H
Q 042645 223 --KKIGLYNESWDNKSFDEKAQEIF-KT---M--RNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-V 291 (427)
Q Consensus 223 --~~l~~~~~~~~~~~~~~~~~~l~-~~---L--~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v 291 (427)
..++.. .. ...........+. .. . .+.+-+||+||++.... ...+...+......+++|+||.+.. +
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000 00 0011111222221 11 1 13455899999976532 2223333322334567777775432 2
Q ss_pred Hh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHH
Q 042645 292 CG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 292 ~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 354 (427)
.. .......+.+.+++.++...++.+.+...+... ..+..+.|++.++|.+-.+......
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~l~~ 229 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILTLQT 229 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 222335678999999999999998765443222 2456888999999987776554443
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=2.4e-08 Score=99.49 Aligned_cols=193 Identities=11% Similarity=0.122 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+...+.|.+++..+. .+.+.++|+.|+||||+|+.+++.+... . ++.. ..+..-...+.+...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~-~------~~~~-~pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE-T------GVTS-TPCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC-c------CCCC-CCCccCHHHHHHhcCCC
Confidence 468999999999999998765 4577999999999999999998876211 0 0000 00011111111111000
Q ss_pred CCC---CCCCCCCHHHHHHHHHH----HhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChh-HH-hhc
Q 042645 227 LYN---ESWDNKSFDEKAQEIFK----TMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-VC-GLM 295 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~-~~~ 295 (427)
... ........++..+.+.. -..++.-++|+|+++... ....+...+.....+..+|++|.+.. +. ...
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl 166 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI 166 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH
Confidence 000 00011122222222211 123566799999998653 34444444444345567777776533 21 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.....+++.+++.++..+.+.+.+...+... ..+....|++.++|.+..+..+
T Consensus 167 SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i---d~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 167 SRCLQFTLRPLAVDEITKHLGAILEKEQIAA---DQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred HhhheeeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3346789999999999999998875544222 2455788999999988655443
No 23
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.92 E-value=6.7e-08 Score=91.44 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe--CCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV--SRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~l~~~i~~~l 225 (427)
.+++|++..++.+..++..+..+.+.|+|++|+||||+++.+++.... ..+. ..++.+ +...... .....+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~--~~~~-~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG--EDWR-ENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC--Cccc-cceEEeccccccchH-HHHHHHHHH
Confidence 458999999999999998877777899999999999999999988621 1111 112222 2221111 111111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCCh-hH-HhhcCCCcce
Q 042645 226 GLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREF-EV-CGLMDAHKSF 301 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~-~v-~~~~~~~~~~ 301 (427)
....+ .....+-++++|+++.... ...+...+......+.+|+++... .+ .........+
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 156 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVF 156 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhee
Confidence 10000 0012356899999875522 233333333333456677766432 11 1111223468
Q ss_pred eccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 302 KVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 302 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
++.+++.++...++...+...+... ..+.+..+++.++|.+.-+....
T Consensus 157 ~~~~l~~~ei~~~l~~~~~~~~~~i---~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 157 RFSPLKKEAVAERLRYIAENEGIEI---TDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred eeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998875443222 24568899999999888754433
No 24
>PF13173 AAA_14: AAA domain
Probab=98.92 E-value=1.6e-09 Score=87.72 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=80.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
.+++.|.|+.|+|||||+++++++.. ....++++++......... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~------------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA------------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh------------------hhh-hHHHHHHhh
Confidence 46899999999999999999998872 3445667665543221100 000 223333333
Q ss_pred cCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhh------cCCCcceeccCCChHHH
Q 042645 249 RNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGL------MDAHKSFKVECLGYEDA 311 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 311 (427)
..++.+|+||++....+|......+.+..+..+|++|+.+...... .+....+++.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3478899999999988888776666665567899999998665422 11224678999998763
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.7e-08 Score=103.58 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHhccCCCeE-EEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGI-VGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..+..|.+++..++.+- +.++|+.|+||||+|+.+++.+... ...... .+..-.....+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce-~~~~~~-------pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE-QGVTAT-------PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc-cCCCCC-------CCCCchHHHHHhcCCC
Confidence 468999999999999998876554 5899999999999999999887311 110000 0000000011111000
Q ss_pred ---CCCCCCCCCCHHHH---HHHHHH-HhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCCh-hHH-hhc
Q 042645 227 ---LYNESWDNKSFDEK---AQEIFK-TMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREF-EVC-GLM 295 (427)
Q Consensus 227 ---~~~~~~~~~~~~~~---~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~ 295 (427)
...........+.. ...+.. -..+++-++|||+++.. .....+...+-......++|++|.+. .+. ...
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 00000001111221 111111 12367779999999865 33444444443334456666655543 332 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.-...|++.+|+.++...++.+.+...+.. ...+.+..|++.++|.|.-+..+.
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~EgI~---~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQEQLP---FEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 234678999999999999999877543322 224568889999999887554443
No 26
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=4.3e-08 Score=94.03 Aligned_cols=193 Identities=18% Similarity=0.225 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.+.+.+..++. +.+.++|++|+||||+|+.+++..... .... ..++..-....++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~-~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ-NGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999999987654 467899999999999999999876210 0000 000000011111111100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChh-HHh-h
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-VCG-L 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~~-~ 294 (427)
... +.......++ ...+.+.+ .+++-++|+|+++... .+..+...+.......++|++|.+.+ +.. .
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI 166 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTI 166 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHH
Confidence 000 0000011222 22222222 2455699999998764 34445444444445666777665432 322 1
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.+-...+++.+++.++..+.+...+...+.. -..+.+..|++.++|.|..+....
T Consensus 167 ~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~---i~~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 167 LSRCLQFKLKIISEEKIFNFLKYILIKESID---TDEYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2223578999999999999998876443311 224557889999999887554443
No 27
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.91 E-value=1.1e-08 Score=88.49 Aligned_cols=176 Identities=17% Similarity=0.187 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHhc-----cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLT-----EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
.+|||.++.+..+.-.+. .+....+.+||++|+||||||..+++.. ...|. +.+.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~-~i~--------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGP-AIE--------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECC-C-----------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccch-hhh---------
Confidence 579999998887654443 2356789999999999999999999998 33332 22211 100
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---------cccccc--CCCC----------CCCCcE
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---------LAQVGL--PVPS----------RASASK 281 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---------~~~~~~--~l~~----------~~~gs~ 281 (427)
...++...+.. + +++.+|.+|+++.... .++... .... ..+-+-
T Consensus 88 -------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 -------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 01122222211 2 2455777788875311 111110 0000 012244
Q ss_pred EEEecCChhHHhhcCCC--cceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcC
Q 042645 282 VVFTTREFEVCGLMDAH--KSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMAS 357 (427)
Q Consensus 282 IivTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~ 357 (427)
|=.|||...+...+... ...+++..+.+|..+++.+.+..-+. +-..+.+.+|+++|.|-|--..-+...++.
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 55688875554333332 23479999999999999987754432 223567999999999999877766665543
No 28
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=5.1e-08 Score=96.61 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
.+++|.+..+..|.+++..+..+ .+.++|++|+||||+|+.+++.+.. .+.+...+|.|.+. ..+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c-~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc-cCCCCCCCCcChhh--------HHHhcCCC
Confidence 45799999999999998877544 5699999999999999999988731 11122222322111 00000000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHhh-
Q 042645 227 LY---NESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVCGL- 294 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~~- 294 (427)
.. .........+. +..+.+.+ .+++-++|+|+++.. ..+..+...+......+.+|++|.. ..+...
T Consensus 85 ~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 85 PDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 00 00001111222 12222222 246679999999855 2345554445443445555555543 333222
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
......+++.+++.++..+++.+.+...+... ..+.+..|++.++|.+.-+..
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~aln 216 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDAES 216 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22345789999999999999999875443222 245688899999999875543
No 29
>PRK08727 hypothetical protein; Validated
Probab=98.89 E-value=3.3e-08 Score=88.69 Aligned_cols=171 Identities=11% Similarity=0.070 Sum_probs=100.2
Q ss_pred ccccc-hhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 149 TVVGM-QSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 149 ~~vGR-~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
+|++. ...+..+.....+.....+.|+|++|+|||+|++.+++... .....+.|++..+ ....+.
T Consensus 20 ~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~----- 85 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR----- 85 (233)
T ss_pred hccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-----
Confidence 34443 34444444443344445699999999999999999998862 2223455655322 111111
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---ccc-cccCCCC-CCCCcEEEEecCChh---------HHh
Q 042645 228 YNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---LAQ-VGLPVPS-RASASKVVFTTREFE---------VCG 293 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~-~~~~l~~-~~~gs~IivTtR~~~---------v~~ 293 (427)
. ..+.+ .+.-+||+||++.... |.. +...+.. ...|..||+||+... +..
T Consensus 86 -----------~----~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 86 -----------D----ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred -----------H----HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 0 11111 2335899999975432 221 2222211 123566999998532 223
Q ss_pred hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 294 LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 294 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.+.....+++++++.++...++.+++....... ..+....|++.++|..-.+..+.
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~l~~L 205 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGLVALL 205 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHHHHH
Confidence 333456789999999999999998764433222 24568888999987766554333
No 30
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.88 E-value=3e-09 Score=86.58 Aligned_cols=117 Identities=21% Similarity=0.259 Sum_probs=79.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC--CCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT--PNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
+.+.+.|+|++|+|||+++..+.+..... ......++|+.+....+...+...++..++..... ..+..++.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 34679999999999999999999876210 00134567999988889999999999999976542 456777888888
Q ss_pred HHhcCCc-EEEEEeccCCc-c--cccccccCCCCCCCCcEEEEecCC
Q 042645 246 KTMRNRK-IVLLLDDIWEL-F--DLAQVGLPVPSRASASKVVFTTRE 288 (427)
Q Consensus 246 ~~L~~k~-~LlVlDdv~~~-~--~~~~~~~~l~~~~~gs~IivTtR~ 288 (427)
+.+...+ .+||+||++.. . .++.+.... + ..+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 8887655 59999999765 2 122222222 2 556778877765
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=98.87 E-value=7.6e-08 Score=95.88 Aligned_cols=182 Identities=19% Similarity=0.239 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHhccC----CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
..++|.++.+++|.+|+... ..+.+.|+|++|+||||+|+.+++... ++ ++-++.+...+. ..+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccH-HHHHHHHH
Confidence 46899999999999998641 267899999999999999999999871 22 233344432222 22333332
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc------ccccccCCCCCCCCcEEEEecCChh-HH--hh
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD------LAQVGLPVPSRASASKVVFTTREFE-VC--GL 294 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~IivTtR~~~-v~--~~ 294 (427)
...... .....++-+||||+++.... ...+...+. ..+..||+|+.+.. .. ..
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhH
Confidence 221110 00113678999999986532 233332332 22344666664422 11 12
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcC
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMAS 357 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~ 357 (427)
......+.+.+++.++....+.+.+...+...+ .+....|++.++|....+......+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~ 208 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAE 208 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 223467899999999999999888754443332 456899999999988777655544443
No 32
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.87 E-value=3.4e-08 Score=98.29 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=112.8
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCC-CcEEEEEEeCCCCCHHHHHHHHHHH-
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPND-FDFVIWEVVSRDLQLGKIQESIAKK- 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~l~~~i~~~- 224 (427)
.++||.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+.+...... -.... +..+..-.....|...
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGR 91 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCC
Confidence 46899999999999999887654 56899999999999999998877321000 00000 0001111111111110
Q ss_pred ----hCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHH-
Q 042645 225 ----IGLYNESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVC- 292 (427)
Q Consensus 225 ----l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~- 292 (427)
+.+... .....+++.+.+... ..++.-++|||+++.. ..++.+...+.....++.+|++|.+ ..+.
T Consensus 92 hpDviEIdAa--s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 92 FVDYIEMDAA--SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCcceEeccc--ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 000000 112233333322221 2356679999999865 3344554444433445666655554 3332
Q ss_pred hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 293 GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 293 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
...+-...+.+..++.++..+.+.+.+...+... ..+..+.|++.++|.|.-...+
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 2222235789999999999999998775433222 2345688999999999755444
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.86 E-value=3.5e-08 Score=93.08 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD-FVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.++.+..|..++..++.+.+.++|++|+||||+|..+++... ...|. .++-++.+...... ..+++...+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 45789999999998888877777788999999999999999998862 11222 12222222222211 2222222211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-H-HhhcCCCccee
Q 042645 227 LYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-V-CGLMDAHKSFK 302 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v-~~~~~~~~~~~ 302 (427)
..... .-.++.-+++||+++.... ...+...+......+++++++.... + .........++
T Consensus 90 ~~~~~---------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 90 QKKVT---------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred hcccc---------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 00000 0013567999999987532 2222222222234566777665422 2 11112235689
Q ss_pred ccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 303 VECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 303 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+.+++.++....+...+...+...+ .+....|++.++|....+....
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999988755442222 4558889999999776554443
No 34
>PTZ00202 tuzin; Provisional
Probab=98.86 E-value=2.3e-07 Score=87.65 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=102.1
Q ss_pred CCCCCCccccchhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHH
Q 042645 143 ERPLPPTVVGMQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQE 219 (427)
Q Consensus 143 ~~~~~~~~vGR~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 219 (427)
.|+.++.|+||+.++.+|...|.+ ...+++.|.|++|+|||||++.+.... . ...++++.. +..+++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~-----~~qL~vNpr---g~eElLr 327 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G-----MPAVFVDVR---GTEDTLR 327 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C-----ceEEEECCC---CHHHHHH
Confidence 345567899999999999999864 234689999999999999999998765 1 113333333 6799999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----c-CCcEEEEEeccCCccccccc---ccCCCCCCCCcEEEEecCChh
Q 042645 220 SIAKKIGLYNESWDNKSFDEKAQEIFKTM-----R-NRKIVLLLDDIWELFDLAQV---GLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~ 290 (427)
.++.+||.+. .....++...|.+.+ . +++.+||+-==+ -.++..+ ...+.....-|.|++----+.
T Consensus 328 ~LL~ALGV~p----~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evples 402 (550)
T PTZ00202 328 SVVKALGVPN----VEACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHcCCCC----cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhh
Confidence 9999999743 222244445544433 2 566666664221 1111111 011223344566776443333
Q ss_pred HHhhc---CCCcceeccCCChHHHHHHHHHHh
Q 042645 291 VCGLM---DAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 291 v~~~~---~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
+.... .--..|.+++++.++|..+..+..
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 21111 111357899999999999887765
No 35
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.84 E-value=2.8e-08 Score=82.26 Aligned_cols=123 Identities=22% Similarity=0.166 Sum_probs=73.2
Q ss_pred ccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042645 151 VGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE 230 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 230 (427)
+|++..+..+...+..+..+.+.|+|++|+|||++++.+++... ..-..++++..+...........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47888999999998876778899999999999999999999872 222345566554432221111111000
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc-----ccccccccCCCC---CCCCcEEEEecCChh
Q 042645 231 SWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL-----FDLAQVGLPVPS---RASASKVVFTTREFE 290 (427)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~-----~~~~~~~~~l~~---~~~gs~IivTtR~~~ 290 (427)
............++.+|++||++.. ..+......+.. ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223356789999999854 112222122211 135678888887643
No 36
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.83 E-value=5e-08 Score=87.67 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=103.1
Q ss_pred cccch-hhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 042645 150 VVGMQ-STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLY 228 (427)
Q Consensus 150 ~vGR~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~ 228 (427)
++|.. ..+..+.++....+.+.+.|+|++|+|||+|++.+++... .....+.++++.....
T Consensus 25 ~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~--------------- 86 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW--------------- 86 (235)
T ss_pred ccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh---------------
Confidence 34632 3344444444445557899999999999999999998762 1223456665532100
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc---ccccc-cccCCCC-CCCC-cEEEEecCChh---------HHh
Q 042645 229 NESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL---FDLAQ-VGLPVPS-RASA-SKVVFTTREFE---------VCG 293 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~g-s~IivTtR~~~---------v~~ 293 (427)
...+.. +.+.. --+|++||++.. ..|+. +...+.. ...| .++|+||+... +..
T Consensus 87 -------~~~~~~----~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 87 -------FVPEVL----EGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -------hhHHHH----HHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 001111 11111 237899999754 23432 1122221 1123 47999998643 344
Q ss_pred hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 294 LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 294 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
.+.....+++.+++.++-.+++.+++...+.. -.+++..-|++.+.|..-.+..+...+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 45566789999999999999998866433322 235668889999988776665554443
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.9e-07 Score=87.92 Aligned_cols=176 Identities=13% Similarity=0.187 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEe-CCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVV-SRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-~~~~~~~~l~~~i~ 222 (427)
..++|.+..++.+.+++..+. .+...++|+.|+||||+|..+++.+.. ...|++...|... +......+ .+++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHH
Confidence 357899999999999998764 456789999999999999999986521 2346666555432 22222222 22222
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChhHH--hhcCCC
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFEVC--GLMDAH 298 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v~--~~~~~~ 298 (427)
..+... -..+++-++|+|+++.. ..+..+...+.....++.+|++|.+.+.. ....-.
T Consensus 83 ~~~~~~------------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 83 EEVNKK------------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHhcC------------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 322211 01245567777877643 44666766666666788888888654321 112234
Q ss_pred cceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 299 KSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
..+.+.++++++...++.+..... ..+.++.++..++|.|.-+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 678999999999998887765311 12336788899999987554
No 38
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.82 E-value=1.1e-07 Score=86.85 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=108.0
Q ss_pred ccccchhhH---HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 149 TVVGMQSTL---DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 149 ~~vGR~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
++||.+..+ .-|...+.++..+.+.+||++|+||||||+.+.+.- +.+- ..||..|....-..-.+.|.++-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEeccccchHHHHHHHHHH
Confidence 355555433 223444556788999999999999999999998876 2221 45666655433333344444332
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEE--ecCChhH---HhhcCCC
Q 042645 226 GLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVF--TTREFEV---CGLMDAH 298 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv--TtR~~~v---~~~~~~~ 298 (427)
.. ...+.++|.+|.+|+++.- .+-+ ..+|.-..|.-++| ||-+.+. ..++.-.
T Consensus 214 q~-----------------~~~l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 214 QN-----------------EKSLTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HH-----------------HHhhhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhcc
Confidence 10 1234578999999999743 2222 33555566776666 6666554 3344556
Q ss_pred cceeccCCChHHHHHHHHHHh---CCCCC--CCCC-----CHHHHHHHHHHHcCCCchH
Q 042645 299 KSFKVECLGYEDAWRLFEEKV---GRDIL--DSHP-----DIPELAETVARECGGLPLA 347 (427)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~---~~~~~--~~~~-----~~~~~~~~i~~~~~G~Pla 347 (427)
.++.|++|+.++...++.+.. +.... ..-+ -...+.+-++..|+|-..+
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 788999999999999998843 22211 1111 2235677788889986653
No 39
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.3e-07 Score=92.23 Aligned_cols=194 Identities=12% Similarity=0.111 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..+||.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+++.+... ..+.. .+++.-.....|...-.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~~~-------~pCg~C~~C~~i~~g~~ 87 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE-KGVSA-------NPCNDCENCREIDEGRF 87 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC-CCCCc-------ccCCCCHHHHHHhcCCC
Confidence 46899999999999999877554 57899999999999999998876211 11100 00000011111110000
Q ss_pred CC---CCCCCCCCHHHHHHHHHH----HhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCCh-hHH-hhc
Q 042645 227 LY---NESWDNKSFDEKAQEIFK----TMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREF-EVC-GLM 295 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~ 295 (427)
.+ .+.......++..+.+.. -..++.-++|+|+++.. .....+...+......+++|++|.+. .+. ...
T Consensus 88 ~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~ 167 (509)
T PRK14958 88 PDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL 167 (509)
T ss_pred ceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH
Confidence 00 000011122222211111 11356679999999865 33444444444334456676665443 222 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.....+++.+++.++....+.+.+...+... ..+....|++.++|.+.-+..+.
T Consensus 168 SRc~~~~f~~l~~~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 168 SRCLQFHLAQLPPLQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred HHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 2335688999999999888887765443222 23457789999999887655443
No 40
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.80 E-value=3.4e-06 Score=86.15 Aligned_cols=202 Identities=15% Similarity=0.075 Sum_probs=118.5
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCC---cEEEEEEeCC---CCCHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDF---DFVIWEVVSR---DLQLGKIQESI 221 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~~~---~~~~~~l~~~i 221 (427)
+.++|++..+..+.+.+..+....+.|+|++|+||||||+.+++.. .....+ ...-|+.+.. ..+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 4689999999999888876666789999999999999999998765 222222 1123443321 11222221111
Q ss_pred ---------------HHHhCCCC----------------CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccc
Q 042645 222 ---------------AKKIGLYN----------------ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQ 268 (427)
Q Consensus 222 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~ 268 (427)
+...+... +.....+ ......+...++++++.++-|+.|.. ..|..
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11112110 0011112 33566777888888888887766643 34666
Q ss_pred cccCCCCCCCCcEEEE--ecCChhH-H-hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 042645 269 VGLPVPSRASASKVVF--TTREFEV-C-GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL 344 (427)
Q Consensus 269 ~~~~l~~~~~gs~Iiv--TtR~~~v-~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 344 (427)
+...+....+...+++ ||++... . ........+.+.+++.++.+.++.+.+....... ..++.+.|.+.+..-
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~g 388 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEG 388 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcH
Confidence 6555554444444555 5554321 1 1111224678999999999999999875432111 245566676666655
Q ss_pred chHHHHHHHH
Q 042645 345 PLALITVGRA 354 (427)
Q Consensus 345 Plai~~~~~~ 354 (427)
+.++..++..
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 6777666544
No 41
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=3.7e-07 Score=86.97 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCC-CCcE-EE-EEEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDF-VI-WEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~-~~-wv~~~~~~~~~~l~~~i~~ 223 (427)
..++|.+.....|.+.+..+..+ .+.++|+.|+||+|+|..+.+.+..... .... .. -.++.. .......+.+..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCChHHHHHHc
Confidence 56899999999999999887644 5889999999999999998887632110 0000 00 000000 000011122211
Q ss_pred HhCCC-----C---CC----CCCCCHHHHHHHHHHHhc-----CCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEE
Q 042645 224 KIGLY-----N---ES----WDNKSFDEKAQEIFKTMR-----NRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVF 284 (427)
Q Consensus 224 ~l~~~-----~---~~----~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv 284 (427)
.-..+ . .. ......++ ++.+.+.+. +.+-++|+||++... ....+...+.....++.+|+
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 10000 0 00 01122333 334444442 567799999998652 23334333333334566777
Q ss_pred ecCChh-HHh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 285 TTREFE-VCG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 285 TtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+|.+.+ +.. .......+.+.+++.++..+++.+..... + ......++..++|.|+....+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 666543 322 22334678999999999999998865321 1 1223678999999998665443
No 42
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=1.4e-07 Score=93.71 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCC------------------CCcEEEEEEe
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPN------------------DFDFVIWEVV 208 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 208 (427)
..++|.+..++.|.+.+..+.. +.+.++|+.|+||||+|+.+++.+..... .|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4679999999999999987654 45789999999999999999986621100 0111111111
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEe
Q 042645 209 SRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFT 285 (427)
Q Consensus 209 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivT 285 (427)
....... +..++...+.. -..+++-++|+||++... ..+.+...+......+.+|++
T Consensus 96 as~~gvd--------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 96 ASRTGVE--------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ccccCHH--------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 1111111 11122222221 123567799999998653 344454444444445656655
Q ss_pred cCC-hhHH-hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHHH
Q 042645 286 TRE-FEVC-GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALITV 351 (427)
Q Consensus 286 tR~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~ 351 (427)
|.+ ..+. ....-...+++.+++.++....+.+.+...+.. ...+....|++.++|.+. ++..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 543 3332 222334678999999999998888866443322 224557889999999775 44444
No 43
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=9.3e-08 Score=92.72 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..+..|..++..+..+ .+.++|+.|+||||+|+.+++.+... .... ...+..... ...+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce--~~~~--~~pCg~C~s----C~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE--NPIG--NEPCNECTS----CLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc--cccC--ccccCCCcH----HHHHHccCC
Confidence 46899999999999999887654 58999999999999999999887311 1100 001111111 111211111
Q ss_pred CCC---CCCCCCCHHH---HHHHHHH-HhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHH-hhc
Q 042645 227 LYN---ESWDNKSFDE---KAQEIFK-TMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVC-GLM 295 (427)
Q Consensus 227 ~~~---~~~~~~~~~~---~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~-~~~ 295 (427)
... ........+. +.+.+.. ...++.-++|+|+++.. ..+..+...+........+|++|.+ ..+. ...
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 0000111222 2222221 12356679999999865 3355554444333344555545544 3332 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.-...|.+.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..+.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~---e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENVQY---DQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCChHHHHHHHH
Confidence 2335689999999999999988875443222 24568899999999986554443
No 44
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=2.5e-07 Score=91.40 Aligned_cols=195 Identities=14% Similarity=0.158 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDF-VIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
.+++|.+..+..|.+.+..+. .+.+.++|++|+||||+|+.+++.+.... .... --+..+..+ .-...+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~-~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA-LITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-ccccCcCcCCCCCC----hHHHHHhcCC
Confidence 357999999999999887765 45789999999999999999998773111 0000 000000000 0111111100
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEE-ecCChhHHhh-
Q 042645 226 GLYN---ESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVF-TTREFEVCGL- 294 (427)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Iiv-TtR~~~v~~~- 294 (427)
.... +.......+++...+... +.+++-++|+|+++.. ..+..+...+......+.+|+ ||....+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 0000 000112223332222221 2356779999999865 335555555544445566655 4444444332
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
......+.+.+++.++....+.+.+...+... ..+....|++.++|.+.-+..
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 22345789999999999999998886544222 245578899999998865543
No 45
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=5.9e-09 Score=97.05 Aligned_cols=238 Identities=21% Similarity=0.246 Sum_probs=157.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+.+.++|.||+||||++-.+.+ .. ..+-+.+.++.+.+-.+...+.-.+...++.+.. +-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHHH
Confidence 347899999999999999999988 31 2344466677777777777777777777876542 223344456667
Q ss_pred hcCCcEEEEEeccCCccc-ccccccCCCCCCCCcEEEEecCChhHHhhcCCCcceeccCCChH-HHHHHHHHHhCCCC--
Q 042645 248 MRNRKIVLLLDDIWELFD-LAQVGLPVPSRASASKVVFTTREFEVCGLMDAHKSFKVECLGYE-DAWRLFEEKVGRDI-- 323 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~lf~~~~~~~~-- 323 (427)
..+++.++|+||..+..+ -......+..+.+.-.|+.|+|.... ........+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 778999999999876532 12222223334455678889887433 234456678888764 78888887653221
Q ss_pred CCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHH----HHHHhhccccCCCChHHHHHHHhhhcCCCCCC
Q 042645 324 LDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHA----IEVLRSSASKFSGMEKKALSRLKFSYDFLPSN 399 (427)
Q Consensus 324 ~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~----l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 399 (427)
............+|.++.+|.|++|...++..+.- ...+.-.. ++.+........--+......+.+||.-|..
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg- 239 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG- 239 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-
Confidence 11223345668899999999999999999888773 33222221 1222222111111123677889999999998
Q ss_pred hHhHHHhhhcCCCCCcccc
Q 042645 400 ETRFCLLYCGFFPEDYSIS 418 (427)
Q Consensus 400 ~~k~cf~~~s~fp~~~~i~ 418 (427)
..+..|.-++.|...|...
T Consensus 240 we~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG 258 (414)
T ss_pred HHHHHhcchhhhhhhhccc
Confidence 7888999999998877654
No 46
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=2e-07 Score=91.39 Aligned_cols=193 Identities=15% Similarity=0.133 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
.+++|.+..++.|.+.+..+..+ .+.++|+.|+||||+|+.+++.+....+ .. ..++..-.....|.....
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~-~~-------~~pCg~C~~C~~i~~~~~ 84 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNG-PT-------SDPCGTCHNCISIKNSNH 84 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCC-CC-------CCCccccHHHHHHhccCC
Confidence 46799999999999998877655 7999999999999999999875411000 00 000111111111111111
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHHh-hc
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVCG-LM 295 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~~ 295 (427)
.+. +.....+.++....+... ..++.-++|+|+++... ..+.+...+......+.+|++|.+ ..+.. ..
T Consensus 85 ~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~ 164 (491)
T PRK14964 85 PDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTII 164 (491)
T ss_pred CCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHH
Confidence 000 000011222222111111 12456699999997653 344454444444456666666643 33322 22
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.....+.+.+++.++....+.+.+...+... ..+....|++.++|.+..+...
T Consensus 165 SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~alsl 217 (491)
T PRK14964 165 SRCQRFDLQKIPTDKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRNALFL 217 (491)
T ss_pred HhheeeecccccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3346789999999999999998876544222 2455788999999988655433
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.75 E-value=2.4e-08 Score=86.48 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=32.9
Q ss_pred ccccchhhHHHHHHHhc---cCCCeEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 149 TVVGMQSTLDRVWRCLT---EEPVGIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
.|+||+++++++.+.+. ....+.+.|+|++|+|||+|++.++....
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 37999999999999993 34678999999999999999999998883
No 48
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.74 E-value=9.9e-08 Score=98.23 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=101.2
Q ss_pred CccccchhhHH---HHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLD---RVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..|+|.+..+. .+.+.+..+..+.+.|+|++|+||||||+.+++.. ...|.. ++... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~---lna~~-~~i~--------- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSS---LNAVL-AGVK--------- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCccee---ehhhh-hhhH---------
Confidence 45899988774 56666777777788999999999999999999876 233311 11110 0000
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEe--cCChh--HH-hhc
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTM--RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFT--TREFE--VC-GLM 295 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivT--tR~~~--v~-~~~ 295 (427)
+..+........+ .+++.+|+|||++... ..+.+...+ ..++.++|+ |.+.. +. ...
T Consensus 92 -----------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 92 -----------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 0111122222222 2467899999997542 233333322 234555553 33321 11 112
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCC----CCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDI----LDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~----~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.-...+.+++|+.++...++.+.+.... .....-..+....|++.+.|..-.+..+
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 2245789999999999999988764100 0111223456788889998876544433
No 49
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.74 E-value=4.1e-07 Score=87.40 Aligned_cols=182 Identities=13% Similarity=0.158 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCC-C------------------CCcEEEEEE
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTP-N------------------DFDFVIWEV 207 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~------------------~f~~~~wv~ 207 (427)
..++|.+..++.|.+++..+.. +.+.++|++|+||||+|+.+.+...... . +++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4679999999999999987654 4678999999999999999987762110 0 1221 1111
Q ss_pred eCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEe
Q 042645 208 VSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFT 285 (427)
Q Consensus 208 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivT 285 (427)
........ -.+.+...+... -..+++-++|+|+++.. .....+...+......+.+|++
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 11111111 111122111100 01245568999998755 2244444444333445666666
Q ss_pred cCChh-HH-hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 286 TREFE-VC-GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 286 tR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
|.+.. +. ........+++.++++++..+++...+...+... ..+.+..|++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 65543 22 2222345788999999999999988774433222 24568889999999997665544
No 50
>PRK09087 hypothetical protein; Validated
Probab=98.74 E-value=1.1e-07 Score=84.57 Aligned_cols=146 Identities=16% Similarity=0.059 Sum_probs=90.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+.+.|+|+.|+|||+|++.+++.. . ..+++.. .+...+...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHh-----------------------
Confidence 44679999999999999999988764 1 1133211 111111111
Q ss_pred hcCCcEEEEEeccCCccc-ccccccCCCC-CCCCcEEEEecCC---------hhHHhhcCCCcceeccCCChHHHHHHHH
Q 042645 248 MRNRKIVLLLDDIWELFD-LAQVGLPVPS-RASASKVVFTTRE---------FEVCGLMDAHKSFKVECLGYEDAWRLFE 316 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~~~-~~~~~~~l~~-~~~gs~IivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (427)
+.+ -+|++||++.... -..+...+.. ...|..+|+|++. ..+...+.....+++++++.++-.++++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 111 2788899965321 1122222211 1236779998874 2344455666789999999999999999
Q ss_pred HHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 317 EKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
+.+....... .+++..-|++.+.|..-.+..+...|
T Consensus 164 ~~~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 KLFADRQLYV---DPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9885443222 25668889999988887776544333
No 51
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.74 E-value=2.9e-07 Score=90.60 Aligned_cols=196 Identities=17% Similarity=0.155 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+.....|.+.+..+.. +.+.++|++|+||||+|+.+++......... + .++..-.....+.....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~----~----~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKG----V----EPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC----C----CCCcccHHHHHHhcCCC
Confidence 4689999998888888887765 4578999999999999999988762110000 0 00000000011100000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHHh-h
Q 042645 227 LY---NESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVCG-L 294 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~ 294 (427)
.. .........++. ..+.+. ..+++-++|+|+++... ....+...+........+|++|.+ ..+.. .
T Consensus 86 ~dv~el~aa~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L 164 (472)
T PRK14962 86 MDVIELDAASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTI 164 (472)
T ss_pred CccEEEeCcccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHH
Confidence 00 000001111221 122222 22466799999997542 233343444333334444444443 33322 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CchHHHHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG-LPLALITVGRAM 355 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~~L 355 (427)
......+.+.+++.++....+.+.+...+.. -..+....|++.++| ++.++..+-.+.
T Consensus 165 ~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 165 ISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred hcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2334678999999999999998887543322 224567888988865 466666665543
No 52
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2e-07 Score=93.85 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
.+++|.+..+..|.+++..+.. ..+.++|+.|+||||+|+.+++.+..... .....-. ..++.-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCC
Confidence 4689999999999999988765 45689999999999999999877621100 0000000 0111112222221100
Q ss_pred CCC---CCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHH-hh
Q 042645 226 GLY---NESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVC-GL 294 (427)
Q Consensus 226 ~~~---~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~-~~ 294 (427)
... .+.......++..+.+... ..++.-++|||+++.. ..+..+...+......+++|++|.+ ..+. ..
T Consensus 92 h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 000 0000112222322222211 1245569999999865 3344454444443445566655543 3332 22
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
..-...+++.+++.++..+.+.+.+...+... ..+....|++.++|.+.-+..+
T Consensus 172 lSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 172 LSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 33446789999999999999998875544222 2455788999999988655544
No 53
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=1.7e-07 Score=94.32 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH--
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK-- 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-- 224 (427)
..++|.+..++.|.+++..++. +.+.++|+.|+||||+|+.+.+.+... .... +..+.. ......+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~-~~~~---~~pCg~----C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE-NAQH---GEPCGV----CQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc-CCCC---CCCCcc----cHHHHHHhccCc
Confidence 4689999999999999987754 468999999999999999998876211 1000 000000 0001111000
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHH----HhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-HH-h
Q 042645 225 ---IGLYNESWDNKSFDEKAQEIFK----TMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-VC-G 293 (427)
Q Consensus 225 ---l~~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v~-~ 293 (427)
+.+.. ......+.+.+.+.. -..+++-++|+|+++.... ...+...+......+++|++|.+.. +. .
T Consensus 88 ~DvlEida--As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~T 165 (709)
T PRK08691 88 VDLLEIDA--ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVT 165 (709)
T ss_pred cceEEEec--cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchH
Confidence 00000 011122222222211 1235667999999976532 3334333433334566776665432 21 1
Q ss_pred hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 294 LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 294 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
..+-...+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 166 IrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 166 VLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred HHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHHHHHH
Confidence 112234678899999999999998876544222 24568899999999986655443
No 54
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.72 E-value=1.5e-07 Score=94.94 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..+||.+..+..|.+.+..+..+ .+.++|+.|+||||+|+.+++.+..... . ....+..-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~-------~~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-I-------TATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-C-------CCCCCCCCHHHHHHHcCCC
Confidence 46899999999999999887654 4689999999999999999887631100 0 0011111122222221100
Q ss_pred CCC---CCCCCCCHHHHHHHHHH----HhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHH-hhc
Q 042645 227 LYN---ESWDNKSFDEKAQEIFK----TMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVC-GLM 295 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~-~~~ 295 (427)
.+. ........++..+.+.. -..+++-++|+|+++... ..+.+...+-......++|++|.+ ..+. ...
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~ 167 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH
Confidence 000 00001122222222111 124567799999998652 344443334333345556655554 3332 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.-...|.+.+++.++....+.+.+...+.. ........|++.++|.+.-+..+.
T Consensus 168 SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~---~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 168 SRCLQFHLKALDVEQIRQQLEHILQAEQIP---FEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred hhheEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 234678999999999999998876433211 224557889999999887554443
No 55
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.8e-07 Score=87.34 Aligned_cols=197 Identities=11% Similarity=0.091 Sum_probs=112.9
Q ss_pred CCccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
-..++|.+.....+...+..+.. ..+.|+|+.|+||||+|..+++.+..... .+... ....++......+.+...
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQG 98 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcC
Confidence 35689999999999999987754 46899999999999999999988732110 01111 011111111233333222
Q ss_pred hC-----C--CC-CC----CCCCCHHHHHHHHHHHhc-----CCcEEEEEeccCCccc--ccccccCCCCCCCCcEEE-E
Q 042645 225 IG-----L--YN-ES----WDNKSFDEKAQEIFKTMR-----NRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVV-F 284 (427)
Q Consensus 225 l~-----~--~~-~~----~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~Ii-v 284 (427)
-. + +. .. ......++. ..+.+++. +++-++|+|+++.... .+.+...+.....++.+| +
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 10 0 00 00 011223333 34444442 5677999999986532 333333332223344444 4
Q ss_pred ecCChhHHh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 285 TTREFEVCG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 285 TtR~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
|++...+.. ..+-...+.+.+++.++..+++.+..... . ...+....|++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444433322 22233578999999999999998843211 1 224457889999999998665443
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.70 E-value=1.7e-07 Score=84.06 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=96.2
Q ss_pred cchhhH-HHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042645 152 GMQSTL-DRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 152 GR~~~~-~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 229 (427)
|..... ..+.++... ...+.+.|+|++|+|||+||+.+++.... .. ..+.+++..... .. +
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~-~~~~~i~~~~~~------~~----~---- 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GG-RNARYLDAASPL------LA----F---- 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CC-CcEEEEehHHhH------HH----H----
Confidence 544433 444444332 34567899999999999999999987621 11 233444433210 00 0
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccccc--ccccCCCC-CCCCc-EEEEecCChhHHh--------hcCC
Q 042645 230 ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLA--QVGLPVPS-RASAS-KVVFTTREFEVCG--------LMDA 297 (427)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~--~~~~~l~~-~~~gs-~IivTtR~~~v~~--------~~~~ 297 (427)
... ...-+||+||++....+. .+...+.. ...+. .+|+|++...... .+..
T Consensus 86 ----------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 86 ----------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred ----------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 011 233478999997643221 22222221 11233 4666666533211 2223
Q ss_pred CcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHc
Q 042645 298 HKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMA 356 (427)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 356 (427)
...+.++++++++-..++.+.+...... -.++..+.|++.+.|++..+..+...+.
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~---l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQ---LADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4678999999988777777654322222 2345688888899999998877776553
No 57
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=6.1e-07 Score=86.21 Aligned_cols=184 Identities=13% Similarity=0.075 Sum_probs=103.9
Q ss_pred CccccchhhHHHHHHHhccCC----------CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP----------VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
..++|.+..++.|.+++..+. .+.+.++|++|+|||++|..+++........ ..+++.. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C----~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGEC----RA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCC----HH
Confidence 457899999999999997653 4678899999999999999998765211100 0000000 11
Q ss_pred HHHHHHHhCCC----CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEec
Q 042645 218 QESIAKKIGLY----NESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTT 286 (427)
Q Consensus 218 ~~~i~~~l~~~----~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt 286 (427)
.+.+...-..+ .+.......+++. .+.+.+ .+++-++|+|+++... ....+...+.....++.+|++|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 11111000000 0000112222222 222222 2455689999998652 2233333333334456666666
Q ss_pred CCh-hHHh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 287 REF-EVCG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 287 R~~-~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
.+. .+.. ...-...+.+.+++.++..+++.+..+. + .+.+..++..++|.|....
T Consensus 155 ~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 155 PSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRAR 211 (394)
T ss_pred CChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 553 3322 2223467899999999999988754321 1 3447789999999997553
No 58
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=3.6e-07 Score=91.09 Aligned_cols=190 Identities=12% Similarity=0.118 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|++..++.+.+++..+. .+.+.++|+.|+||||+|+.+++.+... . |.... .+......+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCCC-CCcccHHHHHHHcCCC
Confidence 467999999999999997754 4578899999999999999998876211 1 11100 1111112222211110
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecC-ChhHH-hh
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTR-EFEVC-GL 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR-~~~v~-~~ 294 (427)
... ........++... +.+. ..+++-++|+|+++.. ..+..+...+......+.+|++|. ...+. ..
T Consensus 88 ~DiieIdaas~igVd~IRe-Ii~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 88 VDIVELDAASNNGVDEIRN-IIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CceEEeccccccCHHHHHH-HHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 000 0001112222221 2121 1234447999999764 234444444433334455555553 33332 22
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
......+++.+++.++....+...+...+...+ .+.+..|++.++|.+.-+.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~Al 218 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGL 218 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHH
Confidence 233467899999999999999987754332222 3457889999999775443
No 59
>PF14516 AAA_35: AAA-like domain
Probab=98.68 E-value=3.1e-06 Score=80.09 Aligned_cols=201 Identities=11% Similarity=0.107 Sum_probs=120.9
Q ss_pred CCccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-----CCHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-----LQLGKIQESI 221 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~~i 221 (427)
.+.+|.|...-+++.+.+.+++ ..+.|.|+-.+|||+|...+.+... . .. ..++++++..- .+...+++.+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~-~-~~-~~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQ-Q-QG-YRCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHH-H-CC-CEEEEEEeecCCCcccCCHHHHHHHH
Confidence 4567899977788888887643 5799999999999999999998873 2 22 34456766532 2455555555
Q ss_pred H----HHhCCCCCCC-----CCCCHHHHHHHHHHHh-c--CCcEEEEEeccCCcccc----cccccCC----CC---CC-
Q 042645 222 A----KKIGLYNESW-----DNKSFDEKAQEIFKTM-R--NRKIVLLLDDIWELFDL----AQVGLPV----PS---RA- 277 (427)
Q Consensus 222 ~----~~l~~~~~~~-----~~~~~~~~~~~l~~~L-~--~k~~LlVlDdv~~~~~~----~~~~~~l----~~---~~- 277 (427)
+ +++++...-. ...+.......+.+.+ . +++.+|+||+++..... .++...+ .. ..
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~ 165 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPI 165 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcc
Confidence 4 4555432100 0112223333344432 2 68999999999865321 1111111 10 00
Q ss_pred CCcEEEEecCChh--HH-h----hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 278 SASKVVFTTREFE--VC-G----LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 278 ~gs~IivTtR~~~--v~-~----~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
..+-.++...+.. .. . .......+.|++++.+|...|+.+.-..- . ....+.|...+||+|..+..
T Consensus 166 ~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~----~---~~~~~~l~~~tgGhP~Lv~~ 238 (331)
T PF14516_consen 166 WQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF----S---QEQLEQLMDWTGGHPYLVQK 238 (331)
T ss_pred cceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC----C---HHHHHHHHHHHCCCHHHHHH
Confidence 1111122221111 11 0 11233578999999999999998764221 1 22389999999999999999
Q ss_pred HHHHHcCC
Q 042645 351 VGRAMASK 358 (427)
Q Consensus 351 ~~~~L~~~ 358 (427)
++..+..+
T Consensus 239 ~~~~l~~~ 246 (331)
T PF14516_consen 239 ACYLLVEE 246 (331)
T ss_pred HHHHHHHc
Confidence 99999774
No 60
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=6.2e-07 Score=86.48 Aligned_cols=182 Identities=12% Similarity=0.191 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCC-----CCCCcEEE-EEEeCCCCCHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHT-----PNDFDFVI-WEVVSRDLQLGKIQES 220 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~-wv~~~~~~~~~~l~~~ 220 (427)
..++|.+...+.+.+.+..+.. +.+.++|++|+||||+|..+.+..... ...|...+ -+......+.. -...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD-DIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH-HHHH
Confidence 4579999999999999987654 588899999999999999998876221 01121111 11101111111 1112
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecC-ChhHH-hhcC
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTR-EFEVC-GLMD 296 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR-~~~v~-~~~~ 296 (427)
+...+... -..+++-++++|+++.... +..+...+......+.+|++|. ...+. ....
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 22211100 0124556899999975432 4444333333233455555553 32222 2223
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
....+++.++++++....+.+.+...+...+ .+.++.|++.++|.+-.+...
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~~ 209 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALSI 209 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHHH
Confidence 3457899999999999999887754332222 456888999999977654433
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=1.7e-07 Score=90.92 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE-eCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV-VSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~l~~~i~~~l 225 (427)
..++|.+..++.|.+++..+..+ .+.++|++|+||||+|..+++..... .......|.. ...++..-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999887654 48899999999999999998877321 1111000110 001111111111111110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEec-CChhHHhh
Q 042645 226 GLYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTT-REFEVCGL 294 (427)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~~ 294 (427)
.... ........+++.+ +.+.+ .+++-++|+|+++... .+..+...+....+.+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 0000 0001111233322 23333 2455689999998653 4555555554444566666555 33333221
Q ss_pred -cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 295 -MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 295 -~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
......+++.++++++....+...+...+.. -..+.+..|++.++|.+.-+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEGIS---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 1223568899999999999998877433211 2245688999999998865544
No 62
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=4.6e-07 Score=94.56 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH--
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK-- 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-- 224 (427)
..+||.+..++.|.+.+..+... .+.++|+.|+||||+|+.+.+.+..... .... .+ ..-...+.|...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~-~~~~---pC----g~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEG-PTST---PC----GECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccC-CCCC---CC----cccHHHHHHHcCCC
Confidence 45799999999999999886554 5789999999999999999888731110 0000 00 000111111111
Q ss_pred --hCCC-CCCCCCCCHHHHHHHHHH-----HhcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHh
Q 042645 225 --IGLY-NESWDNKSFDEKAQEIFK-----TMRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVCG 293 (427)
Q Consensus 225 --l~~~-~~~~~~~~~~~~~~~l~~-----~L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~ 293 (427)
..+. .+.......+++.+ +.+ -..++.-++|||+++.. ...+.|...+......+.+|++|.+ ..+..
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0000 00001112222222 222 12356668999999865 3344454555444455666655543 33432
Q ss_pred -hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 294 -LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 294 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
.......|++.+++.++..+++.+.+...+... ..+....|++.++|.+..+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 223356789999999999999988764433222 23456789999999885443
No 63
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.65 E-value=4.3e-08 Score=88.10 Aligned_cols=92 Identities=20% Similarity=0.179 Sum_probs=62.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCCHH------H
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD--LQLGKIQESIAKKIGLYNESWDNKSFD------E 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~------~ 239 (427)
....++|.|++|+|||||++.+++.. .. .+|+.++|+++... .++.++++.+...+-.... +..... .
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~--~~~~~~~~~~~~~ 90 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-TK-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF--DEPPERHVQVAEM 90 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-cc-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC--CCCHHHHHHHHHH
Confidence 45679999999999999999999988 32 38999999997665 7899999998333222111 111111 1
Q ss_pred HHHHHHHH-hcCCcEEEEEeccCCc
Q 042645 240 KAQEIFKT-MRNRKIVLLLDDIWEL 263 (427)
Q Consensus 240 ~~~~l~~~-L~~k~~LlVlDdv~~~ 263 (427)
........ -.+++++|++|++...
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 11222222 2479999999999643
No 64
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=4.4e-07 Score=90.79 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+++.+..... .. ..++..-.....+...-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~-------~~pcg~C~~C~~i~~~~~ 87 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETG-VT-------ATPCGVCSACLEIDSGRF 87 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC-------CCCCCCCHHHHHHhcCCC
Confidence 46799999999999999886554 5689999999999999999887621100 00 000000001111100000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCCh-hHH-hh
Q 042645 227 LY---NESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREF-EVC-GL 294 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~ 294 (427)
.. .+.......+++. .+.+.. .+++-++|+|+++.... ...+...+......+.+|++|.+. .+. ..
T Consensus 88 ~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI 166 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166 (527)
T ss_pred CceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhH
Confidence 00 0000011222222 122211 35667999999986532 444444444334456666655443 222 11
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
..-...+++.+++.++..+.+.+.+...+.. ...+....|++.++|.+.-+.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~il~~egi~---~~~~al~~la~~s~Gslr~al 218 (527)
T PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIP---FDATALQLLARAAAGSMRDAL 218 (527)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 1223568999999999999988877543322 223457889999999886443
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.4e-06 Score=87.31 Aligned_cols=196 Identities=16% Similarity=0.190 Sum_probs=112.4
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..+..|.+.+..+. .+.+.++|+.|+||||+|+.+++.+... ..... ..++.-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCCC-------CCCcccHHHHHHhcCCC
Confidence 457999999999999888765 5778899999999999999999887311 10000 00111111122211100
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHHh-h
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVCG-L 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~ 294 (427)
... ........++. +.+.+. ..+++-++|+|+++.. .....+...+........+|++|.+ ..+.. .
T Consensus 88 pDv~eId~a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 88 VDVVEIDGASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CceEEEecccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 000 00001112221 122222 2356679999999765 2234444444332334556665554 33332 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-hHHHHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP-LALITVGRAM 355 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~~L 355 (427)
......+++.+++.++....+...+...+... ..+.++.|++.++|.+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22335789999999999999988765433222 2456888999999965 5666665544
No 66
>PRK05642 DNA replication initiation factor; Validated
Probab=98.64 E-value=3.7e-07 Score=81.96 Aligned_cols=154 Identities=16% Similarity=0.202 Sum_probs=93.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|..|+|||.|++.+++... . .-..++|++.. ++... . ..+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~-~--~~~~v~y~~~~------~~~~~----------------~----~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE-Q--RGEPAVYLPLA------ELLDR----------------G----PELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-h--CCCcEEEeeHH------HHHhh----------------h----HHHHHhh
Confidence 35789999999999999999988762 1 12345666543 22111 0 1122223
Q ss_pred cCCcEEEEEeccCCc---ccccc-cccCCCC-CCCCcEEEEecCChhH---------HhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWEL---FDLAQ-VGLPVPS-RASASKVVFTTREFEV---------CGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~---~~~~~-~~~~l~~-~~~gs~IivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
.+-. +||+||+... ..|.. +...+.. ...|..+|+|++..+- ...+.....+++++++.++-.++
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 2222 6889999743 23433 3333321 1245678898875432 23333456789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
++.++...... -.+++..-|++.+.|..-.+..+...|
T Consensus 175 l~~ka~~~~~~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 175 LQLRASRRGLH---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99665433222 225678888888888776665554444
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.64 E-value=1.4e-06 Score=75.61 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=92.5
Q ss_pred HHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCC-------------------CCCcEEEEEEeCCCCCHHHHH
Q 042645 159 RVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTP-------------------NDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 159 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~l~ 218 (427)
.|.+.+..+.. +.+.++|+.|+||||+|..+.+...... .+.+. .++.....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~------- 74 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQ------- 74 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccC-------
Confidence 45566666554 6799999999999999999988763210 11111 11111100
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hH
Q 042645 219 ESIAKKIGLYNESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EV 291 (427)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v 291 (427)
....++....+... ..+.+-++|+||++... ..+.+...+......+.+|++|++. .+
T Consensus 75 ---------------~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 75 ---------------SIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKL 139 (188)
T ss_pred ---------------cCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhC
Confidence 11112221111111 12456789999997653 2444444444434456677666643 22
Q ss_pred Hh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH
Q 042645 292 CG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA 347 (427)
Q Consensus 292 ~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 347 (427)
.. .......+.+.+++.++..+++.+. + .+ .+.+..|++.++|.|..
T Consensus 140 ~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g-----i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 140 LPTIRSRCQVLPFPPLSEEALLQWLIRQ-G-----IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hHHHHhhcEEeeCCCCCHHHHHHHHHHc-C-----CC---HHHHHHHHHHcCCCccc
Confidence 11 1123357899999999999999887 2 11 35588999999999863
No 68
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.63 E-value=2.2e-06 Score=77.79 Aligned_cols=195 Identities=16% Similarity=0.143 Sum_probs=115.9
Q ss_pred hHHHHHHHhccC---CCeEEEEEecCCCcHHHHHHHHHhhccCCCC---CCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042645 156 TLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN---DFDFVIWEVVSRDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 156 ~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 229 (427)
.++.|.+.+..+ ..+-+.|+|.+|.|||++++++...+....+ .--.++.+.....++...++..|+.+++.+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 344455555433 4567999999999999999999987732211 1124677888889999999999999999886
Q ss_pred CCCCCCCHHHHHHHHHHHhcC-CcEEEEEeccCCccc-----cccc---ccCCCCCCCCcEEEEecCChhHHhh-----c
Q 042645 230 ESWDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWELFD-----LAQV---GLPVPSRASASKVVFTTREFEVCGL-----M 295 (427)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~~-----~~~~---~~~l~~~~~gs~IivTtR~~~v~~~-----~ 295 (427)
.. ..+...+.......++. +.=+||+|++++.-. -.++ ...+.+.-.=+-|.+-|++.--+-. .
T Consensus 125 ~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 125 RP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred CC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 43 33445555555566654 455999999987411 1111 1122222222345555543221111 0
Q ss_pred CCCcceeccCCChHH-HHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYED-AWRLFEEKVG--RDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e-~~~lf~~~~~--~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+-...+.++....++ ...|+...-. .-...++-...+++..|...++|+.--+..+-
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 112456666666544 4444433221 11112333456789999999999876665443
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.62 E-value=5.1e-07 Score=86.82 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|++..+++|.+.+.. ...+-+.|+|++|+|||++|+.+++.. ...| +.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~----~ 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVV----G 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecc----h
Confidence 4689999999999887642 124569999999999999999999987 2232 2221 1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc----------------ccccccCCC--C
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD----------------LAQVGLPVP--S 275 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~ 275 (427)
..+.... .+ ........+.+.. ...+.+|+|||++.... +..+...+. .
T Consensus 190 ~~l~~~~---~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SELVRKY---IG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHHHHh---hh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111110 00 0112222232222 34678999999975411 111111111 1
Q ss_pred CCCCcEEEEecCChhH-----HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 276 RASASKVVFTTREFEV-----CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
...+..||.||..... .........+.++..+.++..++|..+..........+ ...+++.+.|..-
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~sg 329 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGASG 329 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCCH
Confidence 1235678888875432 11111235688999999999999998875433222122 5677788887643
No 70
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=8.8e-07 Score=89.47 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD-FVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
..++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++.+......-. ...+-.+ ....-.+.|....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~~g~ 99 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIMEGR 99 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHhcCC
Confidence 4689999999999999987754 46899999999999999999987631110000 0000000 1111112222111
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecC-ChhHH-h
Q 042645 226 GLYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTR-EFEVC-G 293 (427)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR-~~~v~-~ 293 (427)
..+. ........+++.+ +.+.+ .+++-++|+|+++... ..+.+...+......+.+|++|. ...+. .
T Consensus 100 h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~t 178 (598)
T PRK09111 100 HVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178 (598)
T ss_pred CCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHH
Confidence 1000 0001122233222 22222 2455689999997653 24444444444445566666553 33332 2
Q ss_pred hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 294 LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 294 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.......+.+.+++.++....+.+.+...+... ..+....|++.++|.+.-+....
T Consensus 179 I~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222345789999999999999998875443222 23568889999999987665544
No 71
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.60 E-value=4.4e-07 Score=81.26 Aligned_cols=187 Identities=13% Similarity=0.143 Sum_probs=116.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEE-EEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVI-WEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..+.-|.+.+.....+....||++|.|||+.|..++..+. ....|.+.+ -.|.|..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGis-vvr~------ 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGIS-VVRE------ 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-Cccccccchhhhccccccccc-chhh------
Confidence 46799999999999999888889999999999999999999998873 334555443 23333332211 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhc--CCc-EEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChh-HHhh-cCCCc
Q 042645 227 LYNESWDNKSFDEKAQEIFKTMR--NRK-IVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFE-VCGL-MDAHK 299 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L~--~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~ 299 (427)
...+.+.+......... .++ -++|||+++.. +.|..+...+.+....++.++.|..-. +... ..-..
T Consensus 108 ------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 108 ------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 01111111111100000 133 48999999876 457777666655555666665555432 2111 11224
Q ss_pred ceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 300 SFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.|..++|..++...-++..+..++...+ .+..+.|++.++|.=.-..++
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 5889999999999999998876654444 345888999999854433333
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=1.5e-06 Score=87.38 Aligned_cols=194 Identities=14% Similarity=0.111 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+++.+.... .... ..+ +.-...+.+...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-~~~~---~pC----g~C~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-GPTA---TPC----GVCESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-CCCC---Ccc----cccHHHHHhhcccC
Confidence 46899999999999999887655 468999999999999999998763111 0000 000 00011111111000
Q ss_pred CC-----CCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEec-CChhHHh
Q 042645 227 LY-----NESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTT-REFEVCG 293 (427)
Q Consensus 227 ~~-----~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~ 293 (427)
.. .+.......++.. .+.+. ..+++-++|+|+++.. ...+.+...+......+.+|++| ....+..
T Consensus 85 ~~~dvieidaas~~gvd~iR-el~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDTR-ELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred CCceEEEeccccccCHHHHH-HHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00 0000111222221 12221 1345669999999854 23444444444434455555555 4443332
Q ss_pred -hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHHHHH
Q 042645 294 -LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALITVGR 353 (427)
Q Consensus 294 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 353 (427)
..+-...+.+.+++.++..+++.+.+...+... ..+....|++.++|.+. ++..+-.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 223356789999999999999988775433222 23457888999999875 3344433
No 73
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.57 E-value=1e-06 Score=78.19 Aligned_cols=162 Identities=19% Similarity=0.141 Sum_probs=95.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|+.|+|||.|++.+++....... -..++++ +..++...+...+... . ...+.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~------~~~~f~~~~~~~~~~~-------~----~~~~~~~~ 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYL------SAEEFIREFADALRDG-------E----IEEFKDRL 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEE------EHHHHHHHHHHHHHTT-------S----HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccc-cccceee------cHHHHHHHHHHHHHcc-------c----chhhhhhh
Confidence 346899999999999999999998732112 2234554 3456666666655321 1 12344444
Q ss_pred cCCcEEEEEeccCCccc---ccc-cccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWELFD---LAQ-VGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~---~~~-~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
+ .-=+|++||++.... |.+ +...+.. ...|.+||+|+...+ +...+...-.+++.+++.++-.++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 334889999976532 222 2111211 134668999996532 334445667899999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+.+.+...+.. -.+++++-|++.+.+..-.+.-+.
T Consensus 175 l~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 175 LQKKAKERGIE---LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHTT-----S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 99988544322 335667778887776655554433
No 74
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.53 E-value=3.6e-06 Score=82.75 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=104.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|..|+|||+|++.+++.... ...-..+++++ ..++...+...++.. ......+.+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~------~~~f~~~~~~~l~~~---------~~~~~~~~~~~ 204 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMS------GDEFARKAVDILQKT---------HKEIEQFKNEI 204 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEE------HHHHHHHHHHHHHHh---------hhHHHHHHHHh
Confidence 346899999999999999999987621 12222344543 346677776665421 01223344444
Q ss_pred cCCcEEEEEeccCCcc---cc-cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWELF---DL-AQVGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~---~~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
+ ..-+|||||+.... .+ +.+...+.. ...|..||+|+...+ +...+...-.+.+++++.++-.++
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i 283 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI 283 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence 4 34488899997542 12 223222221 123456888876532 233334556788999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
+.+.+...+.. ..-.+++..-|++.++|.|..+.-+..
T Consensus 284 L~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 284 IKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 99988543211 123467799999999999998865553
No 75
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3e-06 Score=85.82 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE-eCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV-VSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~~~~~~~~~l~~~i~~~l 225 (427)
..++|.+..+..|.+++..+.. ..+.++|+.|+||||+|..+++.+... ...+.-.|.. ....+..-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhccC
Confidence 4689999999999999987655 458899999999999999998877321 1110000110 001111111122221110
Q ss_pred CCCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEec-CChhHH-hh
Q 042645 226 GLYN---ESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTT-REFEVC-GL 294 (427)
Q Consensus 226 ~~~~---~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~-~~ 294 (427)
.... +.......+++...+... ..+.+-++|+||++... ..+.+...+......+.+|++| +...+. ..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0000 000111233333322221 23455689999997653 2444544444433445555544 333333 22
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLAL 348 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 348 (427)
......+++.+++.++....+.+.+...+... ..+.++.|++.++|..--+
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I---~~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQI---DADALQLIARKAQGSMRDA 225 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHH
Confidence 33456789999999999988888764332122 2455888999999966544
No 76
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3e-06 Score=86.31 Aligned_cols=195 Identities=17% Similarity=0.204 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+........ ...++.....+.+.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-------~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-------GRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccCHHHHHHhcCCC
Confidence 4689999999999999887654 45789999999999999999987621000000 011122233333332221
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHHh-h
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVCG-L 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~ 294 (427)
... ........++.. .+.+.+ .+++-++|+|+++... ..+.+...+......+.+|++|.+ ..+.. .
T Consensus 89 ~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 110 000112222222 222222 2456799999997552 344444444433445666666544 23322 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
......+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+.....
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22345688999999999999888775443222 245688999999999976654433
No 77
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=1.2e-05 Score=76.23 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=126.5
Q ss_pred CCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
+..++||+.+++.+.+++.. ...+.+-|.|.+|.|||.+...++.+... ...-..++++++..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHHH
Confidence 46789999999999999864 35678889999999999999999998732 22223557777766566778888888
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcC--CcEEEEEeccCCccc--ccccccCCC-CCCCCcEEEEecCCh--h----H
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRN--RKIVLLLDDIWELFD--LAQVGLPVP-SRASASKVVFTTREF--E----V 291 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~--~~~~~~~l~-~~~~gs~IivTtR~~--~----v 291 (427)
..+..... ......+....+..+..+ ..+|+|||+.+.... -..+...|. ..-+++++|+.---. + .
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 77621111 111224556666666654 368999999875421 111111111 112345554432211 1 1
Q ss_pred HhhcC-----CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHc
Q 042645 292 CGLMD-----AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMA 356 (427)
Q Consensus 292 ~~~~~-----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 356 (427)
...+. ....+...|.+.++..++|..+..... ........++.++++|.|.---+..+....+
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 235678899999999999999885443 2233334566677777766655555555544
No 78
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.47 E-value=9.4e-06 Score=72.15 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=129.4
Q ss_pred CccccchhhHHHHHHHhc-----cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLT-----EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..|+|.++.+++|.=.+. +.....+.++|++|.||||||..+++... ..+.. +.++...
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg---vn~k~----tsGp~le--------- 89 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG---VNLKI----TSGPALE--------- 89 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc---CCeEe----ccccccc---------
Confidence 468999998888866554 24567899999999999999999999882 22211 1111111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---------ccccccCC-CC-----------CCCCcE
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---------LAQVGLPV-PS-----------RASASK 281 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---------~~~~~~~l-~~-----------~~~gs~ 281 (427)
.+.+++..+.. |+ ..=+|.+|+++...- .+++.... -. -.+-+-
T Consensus 90 -------------K~gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 90 -------------KPGDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred -------------ChhhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 11111111111 11 223555676654211 11110000 00 112234
Q ss_pred EEEecCChhHHhhcC--CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCC-
Q 042645 282 VVFTTREFEVCGLMD--AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASK- 358 (427)
Q Consensus 282 IivTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~- 358 (427)
|=.|||.-.+..-+. -....+++..+.+|..++..+.+..-+...+ .+-+.+|+++..|-|.-..-+.+..+.-
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 556888754432221 2245689999999999999998854433333 3458999999999998777666655531
Q ss_pred -------CChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCCChHhHH
Q 042645 359 -------KAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNETRFC 404 (427)
Q Consensus 359 -------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~c 404 (427)
-+..--..++..|.-....++..+..++.++.-.|+.=|- .++..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPV-Gl~ti 283 (332)
T COG2255 232 QVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPV-GLDTI 283 (332)
T ss_pred HHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCc-cHHHH
Confidence 1223334455566555555566666777888777876665 55543
No 79
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=4.4e-06 Score=82.11 Aligned_cols=190 Identities=13% Similarity=0.155 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH--
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK-- 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~-- 224 (427)
.+++|.+..+..|.+++..+.. +.+.++|+.|+||||+|+.+++.+.......+.... ........+...
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c-------~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC-------NQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC-------cccHHHHHHhcCCC
Confidence 4689999999999999987654 568899999999999999998876211000000000 000000000000
Q ss_pred ---hCCCCCCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHHh
Q 042645 225 ---IGLYNESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVCG 293 (427)
Q Consensus 225 ---l~~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~ 293 (427)
+..... .....++.. .+.+. ..+++-++|+|+++... ....+...+......+.+|++|.+ ..+..
T Consensus 90 ~d~~~i~g~--~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 90 LDVLEIDGA--SHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred CceEEeecc--ccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 000000 011112211 11111 12567789999987542 233343444333345666666643 22221
Q ss_pred -hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 294 -LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 294 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
.......+++.++++++....+.+.+...+.. -..+.+..|++.++|.+.-+..
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~---i~~~al~~L~~~s~gdlr~a~~ 221 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIE---TSREALLPIARAAQGSLRDAES 221 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22234578999999999999988876433212 2245688899999997754433
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=5.7e-06 Score=81.89 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCC-C-CcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPN-D-FDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..++|.+..+..|.+++..+.. +.+.++|+.|+||||+|+.++........ . ..|.. . .-...+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~------c----~nc~~i~~g 85 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK------C----ENCVEIDKG 85 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc------c----HHHHHHhcC
Confidence 4578999999999999987654 45678999999999999999887621000 0 00000 0 000000000
Q ss_pred -----hCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEec-CChhH
Q 042645 225 -----IGLYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTT-REFEV 291 (427)
Q Consensus 225 -----l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v 291 (427)
+.+... .....++ ++.+.+.. .+++-++|+|+++... ....+...+........+|++| +...+
T Consensus 86 ~~~d~~eidaa--s~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl 162 (486)
T PRK14953 86 SFPDLIEIDAA--SNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKI 162 (486)
T ss_pred CCCcEEEEeCc--cCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHH
Confidence 000000 0111111 12222222 3566799999997552 2344433343333345555554 33333
Q ss_pred Hh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 292 CG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 292 ~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.. .......+.+.+++.++....+.+.+...+... ..+.+..|++.++|.+..+....
T Consensus 163 ~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 163 PPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 223345789999999999999988775433222 23557889999999877554444
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.46 E-value=2.9e-06 Score=89.65 Aligned_cols=180 Identities=15% Similarity=0.133 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCC--CC-CCcEEEE-EEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHT--PN-DFDFVIW-EVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~w-v~~~~~~~~~~l~~~i~~ 223 (427)
..++||+++++++++.|.......+.++|++|+||||+|+.+++..... .. .....+| +.++. +
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------L------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh------h------
Confidence 4589999999999999988776778899999999999999999876211 00 1112222 22211 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc------ccc----cccCCCCCCCCcEEEEecCChhH
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD------LAQ----VGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~------~~~----~~~~l~~~~~gs~IivTtR~~~v 291 (427)
.. ... .....+..+..+.+.+. +++.+|++|+++.... -.+ +.+.+. ...-++|-||.....
T Consensus 255 --~a-g~~-~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~ 328 (852)
T TIGR03345 255 --QA-GAS-VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEY 328 (852)
T ss_pred --hc-ccc-cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHH
Confidence 00 000 01112222222332222 4789999999976421 111 222222 123456666665332
Q ss_pred Hh-------hcCCCcceeccCCChHHHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHcCCCc
Q 042645 292 CG-------LMDAHKSFKVECLGYEDAWRLFEEKVGRDIL-DSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 292 ~~-------~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~-~~~~~~~~~~~~i~~~~~G~P 345 (427)
.. ...-...+.+++++.++..+++......-.. ..-.-..+....+++.+.+..
T Consensus 329 ~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 329 KKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 11 1122357899999999999997544321110 011122455667777776543
No 82
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=7.1e-06 Score=83.25 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..+.. +.+.++|+.|+||||+|+.+++.+..... ... ..++.......|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CCC-------CCCCccHHHHHHhcCCC
Confidence 4689999999999999988765 45689999999999999999887621110 000 00011111111111000
Q ss_pred CC---CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEec-CChhHHh-h
Q 042645 227 LY---NESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTT-REFEVCG-L 294 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTt-R~~~v~~-~ 294 (427)
.. .+.......++. +.+.+.+ .+++-++|+|+++... ....+...+......+.+|++| ....+.. .
T Consensus 88 ~d~~eid~~s~~~v~~i-r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFEIDGASNTGVDDI-RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeeeeeccCccCHHHH-HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00 000001112222 2222222 2455689999997653 2444444443333455566555 4444432 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALITVGR 353 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 353 (427)
......+++.+++.++....+...+...+... ..+.+..|++.++|... ++..+-.
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i---~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISI---SDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 23345788999999999988887765433222 24557889999999764 4444433
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=6.2e-06 Score=81.80 Aligned_cols=194 Identities=14% Similarity=0.151 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|-+.....|...+..+..+ ...++|+.|+||||+|+.+++....... .+. .++..-.-...+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~-~~~-------~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQG-PSS-------TPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCC-CCC-------CCCcccHHHHHHhhcCC
Confidence 46899999999999999877655 5689999999999999998887621110 000 00000000001100000
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHH-hhc
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVC-GLM 295 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~ 295 (427)
... ........+++.+.+... ..+++-++|+|+++... ....+...+......+.+|++|.+. .+. ...
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~ 165 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL 165 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH
Confidence 000 000011123333222211 11455699999997653 2334433443334456677666553 221 122
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.-...+++.+++.++....+.+.+...+... ..+.+..|++.++|.+.-+..+.
T Consensus 166 SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 166 SRTQHFRFKQIPQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred hhceeEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 2346789999999999999988775443222 24568899999999986665543
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.45 E-value=2.2e-06 Score=78.46 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=79.6
Q ss_pred ccccchhhHHHHHHH---hc------------cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC
Q 042645 149 TVVGMQSTLDRVWRC---LT------------EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ 213 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~---l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 213 (427)
.++|.+..+++|.+. +. .+....+.++|++|+||||+|+.+++.+... +......++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 467877766655433 21 1244578899999999999999998765211 11111122332221
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc----------cccccccCCCCCCCCcEEE
Q 042645 214 LGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF----------DLAQVGLPVPSRASASKVV 283 (427)
Q Consensus 214 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~gs~Ii 283 (427)
++.. .. ...........+ +.. ...+|++|+++... ....+...+........++
T Consensus 84 --~l~~----~~-------~g~~~~~~~~~~-~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vi 147 (261)
T TIGR02881 84 --DLVG----EY-------IGHTAQKTREVI-KKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLI 147 (261)
T ss_pred --Hhhh----hh-------ccchHHHHHHHH-Hhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEE
Confidence 1111 10 011111112222 211 23589999997532 1122222222223334555
Q ss_pred EecCChhHHh-------hcC-CCcceeccCCChHHHHHHHHHHhCCC
Q 042645 284 FTTREFEVCG-------LMD-AHKSFKVECLGYEDAWRLFEEKVGRD 322 (427)
Q Consensus 284 vTtR~~~v~~-------~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~ 322 (427)
+++....... ... ....+.+++++.++..+++.+.+...
T Consensus 148 la~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 148 LAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred ecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 6654433211 111 12457899999999999999887543
No 85
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5.6e-06 Score=84.29 Aligned_cols=176 Identities=14% Similarity=0.189 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCC--------------------CCCCcEEEEE
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHT--------------------PNDFDFVIWE 206 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~~f~~~~wv 206 (427)
..++|.+..++.|.+++..+..+ .+.++|+.|+||||+|+.+....... ..+|+.. .+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-EL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Ee
Confidence 46899999999999999887654 58899999999999999988765210 0122211 11
Q ss_pred EeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCcc--cccccccCCCCCCCCc
Q 042645 207 VVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASAS 280 (427)
Q Consensus 207 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs 280 (427)
..+. ....+++...+.+. ..+++=++|+|+++... .+..+...+......+
T Consensus 96 d~~~-----------------------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 96 DAAS-----------------------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred cccc-----------------------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1111 11122222222111 12355588999997653 3444544444434456
Q ss_pred EEEEec-CChhHHh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 281 KVVFTT-REFEVCG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 281 ~IivTt-R~~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
.+|++| ....+.. .......+++.+++.++....+.+.+...+...+ .+.+..|++.++|...-+..
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al~ 221 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDALS 221 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 655544 4444432 2233467899999999999999887754432222 34578899999997765443
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.44 E-value=7.5e-07 Score=83.76 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=64.7
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCCC
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL--QLGKIQESIAKKIGLYNESWDNKS 236 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~~~~~~~ 236 (427)
+++++.- +.....+|+|++|+|||||++.+++... ..+|+.++|+.+.... .+.++++.+...+-... .+...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st--~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST--FDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC--CCCCH
Confidence 3444432 3456789999999999999999999983 2389999999998876 67778887763221111 11111
Q ss_pred HHH------HHHHHHHH-hcCCcEEEEEeccCC
Q 042645 237 FDE------KAQEIFKT-MRNRKIVLLLDDIWE 262 (427)
Q Consensus 237 ~~~------~~~~l~~~-L~~k~~LlVlDdv~~ 262 (427)
... ..+.-... -.++++||++|++..
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 111 11111111 357999999999964
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.42 E-value=2e-05 Score=77.04 Aligned_cols=181 Identities=19% Similarity=0.173 Sum_probs=105.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|++|+|||+|++.+++.... ...-..+++++ ..++...+...+... ... .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~------~~~~~~~~~~~~~~~-------~~~----~~~~~~ 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVS------SEKFTNDFVNALRNN-------KME----EFKEKY 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEE------HHHHHHHHHHHHHcC-------CHH----HHHHHH
Confidence 346899999999999999999998732 11123455554 334455555554311 122 233333
Q ss_pred cCCcEEEEEeccCCcccc----cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWELFDL----AQVGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~~----~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
++ .-+|+|||++..... +.+...+.. ...+..+|+||.... +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 32 348999999754221 112222211 123456888876532 122233345689999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH-------cCCCChHHHHHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM-------ASKKAPREWAHAIEVL 371 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L-------~~~~~~~~w~~~l~~l 371 (427)
+.+.+....... ..++...|++.+.|.+-.+.-+...| ...-+....+.++..+
T Consensus 277 l~~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 277 LQKKAEEEGLEL---PDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999886543222 25678889999998877544322222 1123555666666554
No 88
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.42 E-value=5.4e-06 Score=80.21 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=98.4
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|++..+++|.+.+.. ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 4678999999999887632 235679999999999999999999886 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc----------------ccccccCCC--C
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD----------------LAQVGLPVP--S 275 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~ 275 (427)
.++. ... .+. .......+.+.. ...+.+|+|||++.... ...+...+. .
T Consensus 199 ~~l~----~~~-------~g~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SELV----QKF-------IGE-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHHh----Hhh-------ccc-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 1111 111 011 122233333332 35678999999975410 011111111 1
Q ss_pred CCCCcEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 276 RASASKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
...+..||.||....... .. .-...+.+++.+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 123456777776543211 11 1235689999999999999998775433222222 466777777754
No 89
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.42 E-value=5e-06 Score=76.81 Aligned_cols=132 Identities=11% Similarity=0.081 Sum_probs=71.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRN 250 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 250 (427)
.+.++|++|+|||++|+.+++.... .+......++.++. .++. ..+.. .+.......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~l~----~~~~g-------~~~~~~~~~~~~-a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DDLV----GQYIG-------HTAPKTKEILKR-A-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HHHh----Hhhcc-------cchHHHHHHHHH-c--
Confidence 6889999999999999888776621 12211112333332 1222 11111 111112222222 2
Q ss_pred CcEEEEEeccCCcc------c-----ccccccCCCCCCCCcEEEEecCChhHHhhcC--------CCcceeccCCChHHH
Q 042645 251 RKIVLLLDDIWELF------D-----LAQVGLPVPSRASASKVVFTTREFEVCGLMD--------AHKSFKVECLGYEDA 311 (427)
Q Consensus 251 k~~LlVlDdv~~~~------~-----~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~--------~~~~~~l~~L~~~e~ 311 (427)
..-+|+||++.... + ...+...+.....+.+||+++.......... ....+.+++++.+|.
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 34689999997431 1 1223333333344566777765433222111 135689999999999
Q ss_pred HHHHHHHhCC
Q 042645 312 WRLFEEKVGR 321 (427)
Q Consensus 312 ~~lf~~~~~~ 321 (427)
..++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887743
No 90
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=5.7e-06 Score=84.38 Aligned_cols=186 Identities=11% Similarity=0.126 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|.+++..++ .+.+.++|+.|+||||+|+.+++.+........+ .+-.-.... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~----------~pC~~C~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL----------EPCQECIEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC----------CchhHHHHh---hc
Confidence 457999999999999998765 4567899999999999999998876211100000 000000000 00
Q ss_pred CCC-----CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEE-EecCChhHHh
Q 042645 227 LYN-----ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVV-FTTREFEVCG 293 (427)
Q Consensus 227 ~~~-----~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~Ii-vTtR~~~v~~ 293 (427)
... ........++ ++.+.+.+ .+++-++|+|+++.. ..+..+...+-.....+.+| +|+....+..
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 000 0000112222 22222222 256679999999754 23444443333333344444 4544444432
Q ss_pred -hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 294 -LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 294 -~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
.......+.+.+++.++....+...+...+... ..+.+..|++.++|.+.-+..
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 233346789999999999999988664333222 234578899999997754433
No 91
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.5e-06 Score=82.97 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..+..|.+++..+. .+.+.++|+.|+||||+|+.+++.+... ...... ...+..-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~~----~~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKPT----PEPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCCC----CCCCcccHHHHHHhcCCC
Confidence 457899999999999998764 3678899999999999999999887311 110000 011112223333332221
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHH-hh
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVC-GL 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~-~~ 294 (427)
... ........+.+.+.+ +.+ .+++-++|+|+++... ....+...+......+.+|++|.+ ..+. ..
T Consensus 90 ~D~~ei~~~~~~~vd~IReii-~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 90 LDVIEIDAASNTGVDNIRELI-ERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred ccEEEEeccccCCHHHHHHHH-HHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 110 000112222222222 222 2455689999998653 344454444433344555555543 3332 22
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
......+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+..+..
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22345678889999998888887765433122 234588899999998875544433
No 92
>CHL00181 cbbX CbbX; Provisional
Probab=98.38 E-value=9.5e-06 Score=74.97 Aligned_cols=133 Identities=14% Similarity=0.124 Sum_probs=72.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.++|++|+||||+|+.+++.... .+.-...-|+.++ ..++.... .+ .........+.. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~----~~~l~~~~---~g--------~~~~~~~~~l~~-a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVT----RDDLVGQY---IG--------HTAPKTKEVLKK-A- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEec----HHHHHHHH---hc--------cchHHHHHHHHH-c-
Confidence 35889999999999999999886521 1111111233333 12222211 11 011111122222 1
Q ss_pred CCcEEEEEeccCCcc------cc-----cccccCCCCCCCCcEEEEecCChhHHhhc--------CCCcceeccCCChHH
Q 042645 250 NRKIVLLLDDIWELF------DL-----AQVGLPVPSRASASKVVFTTREFEVCGLM--------DAHKSFKVECLGYED 310 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~------~~-----~~~~~~l~~~~~gs~IivTtR~~~v~~~~--------~~~~~~~l~~L~~~e 310 (427)
..-+|+||+++... ++ ..+...+.+...+..||+++....+.... .....+.+++++.+|
T Consensus 122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e 200 (287)
T CHL00181 122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE 200 (287)
T ss_pred -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence 23599999997531 11 12222233334456777777654432211 123468999999999
Q ss_pred HHHHHHHHhCC
Q 042645 311 AWRLFEEKVGR 321 (427)
Q Consensus 311 ~~~lf~~~~~~ 321 (427)
..+++...+..
T Consensus 201 l~~I~~~~l~~ 211 (287)
T CHL00181 201 LLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHH
Confidence 99999888743
No 93
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.38 E-value=5.4e-06 Score=76.56 Aligned_cols=199 Identities=16% Similarity=0.130 Sum_probs=121.5
Q ss_pred CCccccchhhHHHHHHHhccCC---CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTEEP---VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
.+.|.+|+.++..+...+.... +..|.|+|..|.|||.+.+++.+.. . ...+|+++-+.++...++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n-----~~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N-----LENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C-----CcceeeehHHhccHHHHHHHHHH
Confidence 4678899999999999997643 3456899999999999999999886 1 13589999999999999999999
Q ss_pred HhC-CCCCCCCCC----CHHHHHHHHHH--Hhc--CCcEEEEEeccCCcccccccc--------cCCCCCCCCcEEEEec
Q 042645 224 KIG-LYNESWDNK----SFDEKAQEIFK--TMR--NRKIVLLLDDIWELFDLAQVG--------LPVPSRASASKVVFTT 286 (427)
Q Consensus 224 ~l~-~~~~~~~~~----~~~~~~~~l~~--~L~--~k~~LlVlDdv~~~~~~~~~~--------~~l~~~~~gs~IivTt 286 (427)
+.+ .+.++.... +....+..+.+ ... ++.++||||+++...+.+.+. ..++ .+.. +|+++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i-~iils 155 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTI-VIILS 155 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCce-EEEEe
Confidence 986 222211111 11122233333 111 468999999998765544321 1111 2223 33433
Q ss_pred CChh---HHhhcCCC--cceeccCCChHHHHHHHHHHhCCCCCCC---CCCHHHHHHHHHHHcCCCchHHHHHHHHHc
Q 042645 287 REFE---VCGLMDAH--KSFKVECLGYEDAWRLFEEKVGRDILDS---HPDIPELAETVARECGGLPLALITVGRAMA 356 (427)
Q Consensus 287 R~~~---v~~~~~~~--~~~~l~~L~~~e~~~lf~~~~~~~~~~~---~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 356 (427)
-... ....++.. .++..+..+.+|...++.+.-.+.. .. ..-+.-+..-....|+ -+-.+..+.....
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r-~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~w 231 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKR-KLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAW 231 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcccc-chHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 3221 12212332 3457788999999998876532111 00 0112223445556676 6666666665544
No 94
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=1.2e-05 Score=80.90 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|-+..+..|.+++..+.. +.+.++|+.|+||||+|+.+++.+... ..... ..+.... ..+.+...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~~---~pC~~C~----~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCV-NGPTP---MPCGECS----SCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc-cCCCC---CCCccch----HHHHHHcCCC
Confidence 4689999999999999987654 468899999999999999999886211 10000 0000000 0111111100
Q ss_pred CC---CCCCCCCCHHHHHHHHHH----HhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCC-hhHHh-hc
Q 042645 227 LY---NESWDNKSFDEKAQEIFK----TMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTRE-FEVCG-LM 295 (427)
Q Consensus 227 ~~---~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~~ 295 (427)
.. .........++..+.... -..+++-++|+|+++... .+..+...+......+.+|++|.+ ..+.. ..
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 00 000011222232222111 123566689999998653 344554455444445666666543 33322 22
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.....+++.+++.++....+.+.+...+.. -..+.+..|++.++|.+..+...
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~egi~---id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQIK---YEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 334568999999999999998877443322 22456788999999988655443
No 95
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=1.7e-05 Score=80.18 Aligned_cols=192 Identities=14% Similarity=0.144 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+...+.|.+++..+. .+.+.++|+.|+||||+|+.+.+.+..... .+ ..+++.-.....+.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-PD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC-------CCCCCccHHHHHHhcCCC
Confidence 468999999999999998764 455778999999999999999877621110 00 001111112222211110
Q ss_pred CCC---CCCCCCCHHHHHHHHHHH-----hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEec-CChhHHh-h
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKT-----MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTT-REFEVCG-L 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt-R~~~v~~-~ 294 (427)
.+. +.......++.. .+.+. ..++.-++|+|+++.. ..+..+...+........+|++| ....+.. .
T Consensus 88 ~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 000 000111222222 22222 1356678999999865 23444444443333344555444 3333322 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
......+.+.+++.++....+...+...+... ..+.+..|++.++|.+..+...
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 22345688999999999999988775433222 2355788899999987654433
No 96
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.35 E-value=2e-06 Score=81.28 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHH--
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD--LQLGKIQESIAKKIGLYNESWDNKSFDEKAQ-- 242 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~-- 242 (427)
+....++|+|++|+|||||++.+++... ..+|+..+|+.+... .++.++++.+...+-...-.........+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 3456899999999999999999999873 347999999998865 7899999998654332221101111111111
Q ss_pred --HHHHH-hcCCcEEEEEeccCC
Q 042645 243 --EIFKT-MRNRKIVLLLDDIWE 262 (427)
Q Consensus 243 --~l~~~-L~~k~~LlVlDdv~~ 262 (427)
..... -.+++++|++|++..
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhH
Confidence 11121 358999999999964
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.34 E-value=4.5e-06 Score=81.94 Aligned_cols=182 Identities=16% Similarity=0.126 Sum_probs=106.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|++|+|||+|++.+++.... ...-..++|++. .++...+...+... ..+ .+.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHHH
Confidence 346999999999999999999998721 111124566643 45666666555311 112 233333
Q ss_pred cCCcEEEEEeccCCccc---c-cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWELFD---L-AQVGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
+.+.-+|++||++.... + ..+...+.. ...|..||+||.... +...+.....+.+++.+.+.-..+
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 34566899999975421 1 122222211 122456888875321 122233445788999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH------cC-CCChHHHHHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM------AS-KKAPREWAHAIEVL 371 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L------~~-~~~~~~w~~~l~~l 371 (427)
+++.+....... ..++...|++.+.|..-.+.-+...| .. .-+...-+.++..+
T Consensus 272 L~~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 272 ARKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 998875433222 25668889999888765553322222 11 24555666666544
No 98
>PRK06620 hypothetical protein; Validated
Probab=98.33 E-value=5.8e-06 Score=72.99 Aligned_cols=138 Identities=9% Similarity=-0.011 Sum_probs=82.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
+.+.|+|++|+|||+|++.+++.. .. .++. .... . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 568999999999999999987765 11 1111 0000 0 0 011
Q ss_pred CCcEEEEEeccCCcccccccccCCCC-CCCCcEEEEecCChh-------HHhhcCCCcceeccCCChHHHHHHHHHHhCC
Q 042645 250 NRKIVLLLDDIWELFDLAQVGLPVPS-RASASKVVFTTREFE-------VCGLMDAHKSFKVECLGYEDAWRLFEEKVGR 321 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~~~~~~~~l~~-~~~gs~IivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~ 321 (427)
...-+|++||++...+ ..+...+.. ...|..||+|++..+ +...+.....+++++++.++...++++.+..
T Consensus 84 ~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 84 EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 1234788999974322 112111110 134668999988543 2333445568999999999988888887753
Q ss_pred CCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 322 DILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 322 ~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.... -.+++.+-|++.+.|.--.+.-+.
T Consensus 163 ~~l~---l~~ev~~~L~~~~~~d~r~l~~~l 190 (214)
T PRK06620 163 SSVT---ISRQIIDFLLVNLPREYSKIIEIL 190 (214)
T ss_pred cCCC---CCHHHHHHHHHHccCCHHHHHHHH
Confidence 3222 225668888888877655544433
No 99
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.33 E-value=5.5e-06 Score=78.24 Aligned_cols=173 Identities=9% Similarity=0.034 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+...+.+..++..+.. .++.++|++|+||||+|+.+++.. ... ...++.+. .... ..+..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~-~i~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRID-FVRNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHH-HHHHHHHHHH
Confidence 4679999999999999987654 566669999999999999998875 111 23333333 1111 1111111110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc--c-ccccccCCCCCCCCcEEEEecCChhH--HhhcCCCcce
Q 042645 227 LYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF--D-LAQVGLPVPSRASASKVVFTTREFEV--CGLMDAHKSF 301 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~-~~~~~~~l~~~~~gs~IivTtR~~~v--~~~~~~~~~~ 301 (427)
.. ..+.+.+-+||+||++... + ...+...+.....++.+|+||..... .........+
T Consensus 93 ~~-----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 93 ST-----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred Hh-----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 00 0011345689999997651 1 12222223333456788888865431 1111222457
Q ss_pred eccCCChHHHHHHHHHHh-------CCCCCCCCCCHHHHHHHHHHHcCCCchHH
Q 042645 302 KVECLGYEDAWRLFEEKV-------GRDILDSHPDIPELAETVARECGGLPLAL 348 (427)
Q Consensus 302 ~l~~L~~~e~~~lf~~~~-------~~~~~~~~~~~~~~~~~i~~~~~G~Plai 348 (427)
.++..+.++..+++.... ...+ .+-..+....+++..+|.-..+
T Consensus 156 ~~~~p~~~~~~~il~~~~~~~~~~~~~~~---~~i~~~al~~l~~~~~~d~r~~ 206 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQMIVRCKGILEAEG---VEVDMKVLAALVKKNFPDFRRT 206 (316)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHhcCCCHHHH
Confidence 777888888776654321 1111 1122334577777776654433
No 100
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=1.1e-05 Score=79.96 Aligned_cols=181 Identities=19% Similarity=0.181 Sum_probs=106.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|++|+|||+|++.+++.... ...-..+++++. .++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~------~~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTS------EKFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 356899999999999999999998732 111234455543 3344445444421 111 2233333
Q ss_pred cCCcEEEEEeccCCccc---c-cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHH
Q 042645 249 RNRKIVLLLDDIWELFD---L-AQVGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRL 314 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~l 314 (427)
+ +.-+|+|||++.... + +.+...+.. ...|..||+||...+ +...+.....+.+++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 344899999975321 1 122221111 112455888876532 123334446789999999999999
Q ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH-------cCCCChHHHHHHHHHH
Q 042645 315 FEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM-------ASKKAPREWAHAIEVL 371 (427)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L-------~~~~~~~~w~~~l~~l 371 (427)
+++.+...... -..++...|++.+.|..-.+.-+...| ...-+....+.++..+
T Consensus 289 l~~~~~~~~~~---l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 289 LKKKAEEEGID---LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHcCCC---CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 99988543222 235668999999999877543322222 1124566666666654
No 101
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.31 E-value=7.1e-06 Score=78.93 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=71.1
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
.++++.+..++.+...|... +.+.++|++|+|||++|+.+++.. .....+..+.||++++.++..++...+.-. +.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v 250 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV 250 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCC-CC
Confidence 35678889999999998764 458889999999999999999887 444577888999999888766655422100 00
Q ss_pred CCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCC
Q 042645 228 YNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWE 262 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~ 262 (427)
. .. ....-..+.+..... +++++||+|++..
T Consensus 251 g---y~-~~~G~f~~~~~~A~~~p~~~~vliIDEINR 283 (459)
T PRK11331 251 G---FR-RKDGIFYNFCQQAKEQPEKKYVFIIDEINR 283 (459)
T ss_pred C---eE-ecCchHHHHHHHHHhcccCCcEEEEehhhc
Confidence 0 00 000111122222222 4789999999964
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.30 E-value=7e-06 Score=85.99 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=90.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC--CC-CcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--ND-FDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..++||+++++++++.|......-+.++|++|+|||++|+.+++...... .. ....+|. + +...+. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~----a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL----AG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----hh
Confidence 35899999999999999877666788999999999999999998863211 11 1233332 1 111111 10
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc----------ccc-cccCCCCCCCCcEEEEecCChhHH
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD----------LAQ-VGLPVPSRASASKVVFTTREFEVC 292 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~----------~~~-~~~~l~~~~~gs~IivTtR~~~v~ 292 (427)
.. .....++.+..+.+.+ +.++.+|++|+++.... ... +...+.. ..-++|-+|...+..
T Consensus 253 ~~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 253 TK------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYK 324 (731)
T ss_pred cc------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHH
Confidence 00 0112233444444443 34689999999974321 111 2222221 123455555432221
Q ss_pred -------hhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 293 -------GLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 293 -------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
....-...+.+++++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 111123468999999999999999654
No 103
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.29 E-value=1.2e-05 Score=77.85 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred cchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC
Q 042645 152 GMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE 230 (427)
Q Consensus 152 GR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~ 230 (427)
.|...+.++.+.+..... ++.|.|+-++||||+++.+..... .. .++++..+.. +-..+ .
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~----------- 81 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-L----------- 81 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-H-----------
Confidence 344555566666554443 999999999999999977776652 22 4554433221 11111 1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh------hcCCCcceecc
Q 042645 231 SWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG------LMDAHKSFKVE 304 (427)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~------~~~~~~~~~l~ 304 (427)
+....+...-..++..|+||.|....+|......+.+.... +|++|+.+..... ..+-...+.+-
T Consensus 82 --------d~~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 82 --------DLLRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred --------HHHHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 11111111111277899999999999999887777766555 8999888765421 12234578999
Q ss_pred CCChHHHHHH
Q 042645 305 CLGYEDAWRL 314 (427)
Q Consensus 305 ~L~~~e~~~l 314 (427)
||+..|-..+
T Consensus 153 PlSF~Efl~~ 162 (398)
T COG1373 153 PLSFREFLKL 162 (398)
T ss_pred CCCHHHHHhh
Confidence 9999888653
No 104
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.27 E-value=3.5e-05 Score=77.20 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=96.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.|+|..|+|||.|++.+++.... ...-..++|++ ..++...+...+.. .. ...+.+.++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yit------aeef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVS------SEEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEee------HHHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 11122445554 34455555544321 11 122333333
Q ss_pred CCcEEEEEeccCCccc---cc-ccccCCCC-CCCCcEEEEecCCh---------hHHhhcCCCcceeccCCChHHHHHHH
Q 042645 250 NRKIVLLLDDIWELFD---LA-QVGLPVPS-RASASKVVFTTREF---------EVCGLMDAHKSFKVECLGYEDAWRLF 315 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~---~~-~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~lf 315 (427)
+ .=+|||||+..... |. .+...+.. ...+..|||||... .+...+.....+.+.+.+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 34788999975422 21 22222221 12345688888753 23344456678899999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 316 EEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
.+++....... -.++++-|++.+.+..-.+.
T Consensus 456 ~kka~~r~l~l---~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 456 RKKAVQEQLNA---PPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHhcCCCC---CHHHHHHHHHhccCCHHHHH
Confidence 99886544322 25668888888887655543
No 105
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=5.9e-05 Score=70.56 Aligned_cols=198 Identities=12% Similarity=0.124 Sum_probs=110.2
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCC------------CCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTP------------NDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------~~f~~~~wv~~~~~~~~ 214 (427)
..++|.+..++.+.+.+..+. .+...++|+.|+||+++|..+++...... .......|+.-....+-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 357899999999999998876 47899999999999999999887752111 11122233321100000
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTR 287 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR 287 (427)
..+-..-+...+...........++ ++.+.+.+ .+++-++|+|+++.... ...+...+-... .+.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0000011111111111001122223 23344443 35667999999976532 333333332222 344555554
Q ss_pred C-hhHHh-hcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 288 E-FEVCG-LMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 288 ~-~~v~~-~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
+ ..+.. ..+-...+.+.+++.++..+.+.+...... .......++..++|.|..+..+..
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHHHH
Confidence 4 33322 223346789999999999999998753211 111146789999999987655443
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=4.5e-05 Score=74.84 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=90.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.|+|+.|+|||+|++.+++.... ....+++++ ...+...+...+... . ...++..++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~------~~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR------SELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee------HHHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 56889999999999999999998732 123345543 334445555554311 1 123344343
Q ss_pred CCcEEEEEeccCCcccc----cccccCCCC-CCCCcEEEEecCChh---------HHhhcCCCcceeccCCChHHHHHHH
Q 042645 250 NRKIVLLLDDIWELFDL----AQVGLPVPS-RASASKVVFTTREFE---------VCGLMDAHKSFKVECLGYEDAWRLF 315 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~~----~~~~~~l~~-~~~gs~IivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~lf 315 (427)
..-+|++||+...... +.+...+.. ...|..||+||.... +...+.....+.+.+++.++...++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 3448889999754221 122222211 113456888886521 2233344567899999999999999
Q ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 316 EEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
++.+...+... ..++..-|+..+.|.-
T Consensus 281 ~~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 98875443222 2456777777777554
No 107
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.21 E-value=2.3e-05 Score=75.59 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|.+..+++|.+.+.. ...+-+.++|++|+|||+||+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578988888888776531 245679999999999999999999876 2222 11111
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SR 276 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 276 (427)
..+. ... .......+...+.......+.+|+||+++.... +..+...+. ..
T Consensus 213 s~l~----~k~-------~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SEFV----QKY-------LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HHHH----HHh-------cchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111 111 011112222223333346889999999874310 111111111 12
Q ss_pred CCCcEEEEecCChhHH-h-hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 277 ASASKVVFTTREFEVC-G-LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~-~-~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
..+..||.||...... . ... -...+.++..+.++...+|+............+ ...+++.+.|..-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~sg 352 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKISA 352 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCCH
Confidence 2356677777754332 1 111 235688999999998888887764433222223 4566677777544
No 108
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.20 E-value=6.1e-06 Score=87.50 Aligned_cols=154 Identities=19% Similarity=0.277 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC--CC-CcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--ND-FDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..++||+++++++++.|......-+.++|++|+|||++|..++....... .. -...+|. + +...++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a----- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA----- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-----
Confidence 35799999999999999877666778999999999999999988763211 11 1233442 1 2222211
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc---------cccc-ccCCCCCCCCcEEEEecCChhHHh
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD---------LAQV-GLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~---------~~~~-~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
+.. .....++.+..+.+.+ ..++.+|++|+++.... ...+ .+.+. ...-++|.+|.......
T Consensus 249 -g~~----~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -GTK----YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRK 321 (821)
T ss_pred -cCC----CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHH
Confidence 111 1112233333333333 35789999999974311 1111 11221 12245666666544321
Q ss_pred -------hcCCCcceeccCCChHHHHHHHHHH
Q 042645 294 -------LMDAHKSFKVECLGYEDAWRLFEEK 318 (427)
Q Consensus 294 -------~~~~~~~~~l~~L~~~e~~~lf~~~ 318 (427)
.......+.++..+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1122356788889999988888754
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.19 E-value=1.3e-05 Score=77.97 Aligned_cols=171 Identities=17% Similarity=0.182 Sum_probs=96.9
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|.+..+++|.+.+.- ...+.+.|+|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 467899988888877631 134578899999999999999999976 2333 222111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 277 (427)
++.. .. .......+...+.....+.+.+|+||+++.... ...+...+. ...
T Consensus 252 eL~~----k~-------~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 ELIQ----KY-------LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hhhh----hh-------cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1111 11 111111222222233346789999999864310 001111111 112
Q ss_pred CCcEEEEecCChhHHhh--c---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 278 SASKVVFTTREFEVCGL--M---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 278 ~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
.+..||.||........ + .....+.++..+.++..++|..+..........+ ...++..+.|.--
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~sg 390 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELSG 390 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCCH
Confidence 35677878775443221 1 1235689999999999999998765433222223 4556666666544
No 110
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00016 Score=63.58 Aligned_cols=182 Identities=16% Similarity=0.183 Sum_probs=105.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS-RDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
++.+++.++|.-|+|||++.+.....+. + +.++-+.+. +..+...+...+...+.............+....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~---~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN---E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC---C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 4556899999999999999996555541 1 112223433 445677788888888876321111112223333344
Q ss_pred HHh-cCCc-EEEEEeccCCcc--cccccccCC---CCCCCCcEEEEecCCh--------hHHhhcCCCc-ceeccCCChH
Q 042645 246 KTM-RNRK-IVLLLDDIWELF--DLAQVGLPV---PSRASASKVVFTTREF--------EVCGLMDAHK-SFKVECLGYE 309 (427)
Q Consensus 246 ~~L-~~k~-~LlVlDdv~~~~--~~~~~~~~l---~~~~~gs~IivTtR~~--------~v~~~~~~~~-~~~l~~L~~~ 309 (427)
+.. ++++ ..+++||.+... ..+.++... .+....-+|+..-..+ .....-.-.. .|.+.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 433 4666 999999997542 222221111 1111112333333221 1111111112 3899999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 310 DAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 310 e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
+...+++.+........+-...+....|.....|.|.+|..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999998886554233333345688899999999999987764
No 111
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.14 E-value=0.0001 Score=73.97 Aligned_cols=177 Identities=16% Similarity=0.142 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHh---cc---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCL---TE---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..+.++.+.+ .. ...+-+.++|++|+|||+||+.+++.. ...| +.++ ..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~-----~~i~----~~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF-----FSIS----GS 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe-----eecc----HH
Confidence 35788877666655443 21 234468999999999999999999876 2222 2222 11
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc------------c----cccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD------------L----AQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------------~----~~~~~~l~--~~~ 277 (427)
++.. .. .......+...+.......+.+|+|||++.... + ..+...+. ...
T Consensus 123 ~~~~----~~-------~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DFVE----MF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HHHH----HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111 11 011222333334444456789999999975311 0 01111111 112
Q ss_pred CCcEEEEecCChhH-Hh-hc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-hHHHHH
Q 042645 278 SASKVVFTTREFEV-CG-LM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP-LALITV 351 (427)
Q Consensus 278 ~gs~IivTtR~~~v-~~-~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~ 351 (427)
.+..||.||..... -. .. .-...+.++..+.++-.++|+..+........ .....+++.+.|.. --|..+
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHHH
Confidence 33445556654331 11 11 12356889999999999999887754321111 12557888888744 434433
No 112
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.14 E-value=1.7e-05 Score=78.36 Aligned_cols=158 Identities=16% Similarity=0.254 Sum_probs=88.4
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCC--CCCcEEEEEEeCCCC
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--NDFDFVIWEVVSRDL 212 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~~~~~ 212 (427)
.++.|.+..+++|.+.+.. ...+-+.++|++|+|||++|+.+++.+.... .......|+++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3467899999988887631 2345699999999999999999999872110 01223344444331
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCccc---------c-----cccccCC
Q 042645 213 QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELFD---------L-----AQVGLPV 273 (427)
Q Consensus 213 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~~---------~-----~~~~~~l 273 (427)
+++.. . ... .+..+..+.+.. .+++++|+||+++.... . ..+...+
T Consensus 261 ---eLl~k----y-------vGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 ---ELLNK----Y-------VGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ---hhccc----c-------cch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 11110 0 001 112222222221 25799999999975311 1 1222222
Q ss_pred CC--CCCCcEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhCC
Q 042645 274 PS--RASASKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVGR 321 (427)
Q Consensus 274 ~~--~~~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~ 321 (427)
.. ...+..||.||....... .. .-...|.++..+.++..++|+.++..
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 21 112344555554433211 11 12345899999999999999998743
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.14 E-value=2.3e-05 Score=83.23 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=87.0
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC--CC-Cc-EEEEEEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--ND-FD-FVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~-f~-~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
..++||+.+++++++.|.......+.++|++|+|||++|..++....... .. .. .++++.++. ++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a---- 247 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA---- 247 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh----
Confidence 35899999999999999887667788999999999999999998862110 00 11 222222221 110
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHh--cCCcEEEEEeccCCccc---------ccc-cccCCCCCCCCcEEEEecCChhH
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTM--RNRKIVLLLDDIWELFD---------LAQ-VGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~~---------~~~-~~~~l~~~~~gs~IivTtR~~~v 291 (427)
.. . .....++....+...+ .+++.+|++|+++.... ... +.+.+. ...-++|-+|...+.
T Consensus 248 g~--~----~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 GA--K----YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEY 319 (857)
T ss_pred cc--c----hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHH
Confidence 00 0 0111223333333322 25789999999975421 112 222222 123455655555443
Q ss_pred Hhh-------cCCCcceeccCCChHHHHHHHHHHh
Q 042645 292 CGL-------MDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 292 ~~~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
... ..-...+.+...+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 111 1112356666668888888886554
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=0.00012 Score=68.98 Aligned_cols=167 Identities=11% Similarity=0.093 Sum_probs=88.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC-----CC-CCCCCCCCHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG-----LY-NESWDNKSFDEKAQ 242 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~-----~~-~~~~~~~~~~~~~~ 242 (427)
.+.+.++|+.|+|||++|..+++.+.-.... .. ..+..-...+.+...-. +. .........++..+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQ-GG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-CC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 4568899999999999999998876321100 00 00000001111110000 00 00001122333332
Q ss_pred HHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChh-HH-hhcCCCcceeccCCChHHHHH
Q 042645 243 EIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-VC-GLMDAHKSFKVECLGYEDAWR 313 (427)
Q Consensus 243 ~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~ 313 (427)
+.+.+ .+++-++|+|+++... ....+...+.....++.+|+||.+.. +. ...+-...+.+.+++.+++.+
T Consensus 94 -l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 -LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred -HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 22222 2344566789998652 33344333433345677777777643 22 222334578999999999999
Q ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 314 LFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 314 lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.+....... ..+.+..++..++|.|+....+
T Consensus 173 ~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 998764211 1233567789999999865443
No 115
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.10 E-value=3.1e-05 Score=82.47 Aligned_cols=156 Identities=16% Similarity=0.231 Sum_probs=88.9
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC--C-CCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--N-DFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~-~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..++||+.+++++++.|.......+.++|++|+|||++|..+++...... . .....+|.. ++..++ .
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~----a- 242 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI----A- 242 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh----h-
Confidence 34899999999999999877666778999999999999999988762110 0 012222211 111111 0
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc---------ccccccCCCCCCCCcEEEEecCChhHHh
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD---------LAQVGLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~---------~~~~~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
+.. .....+..+..+...+. +++.+|++|+++.... ...+..+... ...-++|-+|...+...
T Consensus 243 -~~~----~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 243 -GAK----YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRK 316 (852)
T ss_pred -cch----hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHH
Confidence 000 01122333333333332 4689999999985421 1112112111 12235555555444321
Q ss_pred h-------cCCCcceeccCCChHHHHHHHHHHh
Q 042645 294 L-------MDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 294 ~-------~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
. ..-...+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1122467889999999999987654
No 116
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.09 E-value=2e-05 Score=81.83 Aligned_cols=155 Identities=19% Similarity=0.322 Sum_probs=89.1
Q ss_pred ccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCC---CcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 149 TVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPND---FDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
.++||+.+++++++.|.......+.++|++|+|||++|+.+++......-. .++.+|. .++..+ +.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~-----l~~~~l----la-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-----LDIGSL----LA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe-----ccHHHH----hc--
Confidence 489999999999999987655667899999999999999998765221111 2333442 112111 10
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCcc----------cccccccCCCCCCCCcEEEEecCChhHHh-
Q 042645 226 GLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELF----------DLAQVGLPVPSRASASKVVFTTREFEVCG- 293 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~gs~IivTtR~~~v~~- 293 (427)
+.. .....+.....+...+ +.++.+|++|+++... +...+..++.. ...-++|-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 000 0112233333333333 3567899999997531 11111112211 12344555555443211
Q ss_pred ------hcCCCcceeccCCChHHHHHHHHHHh
Q 042645 294 ------LMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 294 ------~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
...-...+.+++++.++..+++....
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11122578999999999999998643
No 117
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.08 E-value=1.7e-05 Score=64.70 Aligned_cols=89 Identities=24% Similarity=0.109 Sum_probs=49.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.|+|++|+||||+++.++.... .....++++..+........... ....... ............+....+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGK---KASGSGELRLRLALALAR 75 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhcc---CCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998872 22233455554433222111111 0011110 122233333444444444
Q ss_pred CC-cEEEEEeccCCccc
Q 042645 250 NR-KIVLLLDDIWELFD 265 (427)
Q Consensus 250 ~k-~~LlVlDdv~~~~~ 265 (427)
.. ..+|++|++.....
T Consensus 76 ~~~~~viiiDei~~~~~ 92 (148)
T smart00382 76 KLKPDVLILDEITSLLD 92 (148)
T ss_pred hcCCCEEEEECCcccCC
Confidence 43 49999999987643
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.05 E-value=0.00079 Score=71.21 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
..++|.+..++.|.+++.. ...+++.++|++|+|||++|+.+++.. ...|.. ++++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~---i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVR---FSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEE---EeCCCcccHHHHcC--
Confidence 4578999999998886631 244689999999999999999999987 233322 22232222222211
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---------cccccc-----CCCCC-------CCCc
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---------LAQVGL-----PVPSR-------ASAS 280 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---------~~~~~~-----~l~~~-------~~gs 280 (427)
............+.+.+...-. ++-+|+||+++.... +-++.. .|.+. ..+.
T Consensus 392 ------~~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 392 ------HRRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ------CCCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 1111111222333344433322 334789999975421 111110 11111 1223
Q ss_pred EEEEecCChh-H-HhhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 281 KVVFTTREFE-V-CGLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 281 ~IivTtR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
-+|.||.... + .....-...+.+.+++.++-.+++++..
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 3444554322 1 1222233578999999999888887654
No 119
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.03 E-value=1.7e-05 Score=64.22 Aligned_cols=22 Identities=36% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|+|++|+|||++|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.02 E-value=0.00015 Score=63.96 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHh----ccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCL----TEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.|++-. ......-+.++|..|+|||+|++.+.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 56899999988886643 33466779999999999999999999988
No 121
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.01 E-value=7.2e-05 Score=71.34 Aligned_cols=182 Identities=17% Similarity=0.127 Sum_probs=105.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc--EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD--FVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
....+.|||..|.|||.|++.+.+... .... .++++ +.......+...+.- .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~---~~~~~a~v~y~------~se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEAL---ANGPNARVVYL------TSEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH---hhCCCceEEec------cHHHHHHHHHHHHHh-----------hhHHHHH
Confidence 367899999999999999999999872 2233 33333 234445555544421 2233445
Q ss_pred HHhcCCcEEEEEeccCCcccc---c-ccccCCCC-CCCCcEEEEecCCh---------hHHhhcCCCcceeccCCChHHH
Q 042645 246 KTMRNRKIVLLLDDIWELFDL---A-QVGLPVPS-RASASKVVFTTREF---------EVCGLMDAHKSFKVECLGYEDA 311 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv~~~~~~---~-~~~~~l~~-~~~gs~IivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 311 (427)
+.. .-=++++||++..... + ++...|.. ...|..||+|++.. .+...+...-.+.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 544 3348999999754222 1 22222221 12344899999653 2345556677899999999999
Q ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC----CchHHHHHHHHHcC---CCChHHHHHHHHHHhhc
Q 042645 312 WRLFEEKVGRDILDSHPDIPELAETVARECGG----LPLALITVGRAMAS---KKAPREWAHAIEVLRSS 374 (427)
Q Consensus 312 ~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G----~Plai~~~~~~L~~---~~~~~~w~~~l~~l~~~ 374 (427)
..++.+.+.......++ ++..-|++.... +.-|+..+..+-.. .-+...-+.++..+...
T Consensus 250 ~aiL~kka~~~~~~i~~---ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 250 LAILRKKAEDRGIEIPD---EVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHHHHHHhcCCCCCH---HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 99999987655434433 334445554443 33333332222111 13555556666555444
No 122
>CHL00176 ftsH cell division protein; Validated
Probab=97.98 E-value=0.00021 Score=73.02 Aligned_cols=169 Identities=17% Similarity=0.159 Sum_probs=94.8
Q ss_pred CccccchhhHHHHHH---HhccC---------CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWR---CLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~---~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.++.|.++.++++.+ .+..+ ..+-+.++|++|+|||+||+.+++.. ... ++.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccH----H
Confidence 457788766555544 44332 24569999999999999999998876 111 222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------c----ccccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF------------D----LAQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~~~ 277 (427)
++.. .. .......+...+.......+++|+|||++... . +..+...+. ...
T Consensus 251 ~f~~----~~-------~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFVE----MF-------VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHHH----Hh-------hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 1111 00 01111223334444556789999999997431 0 111111111 122
Q ss_pred CCcEEEEecCChhHHh--hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC
Q 042645 278 SASKVVFTTREFEVCG--LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG 343 (427)
Q Consensus 278 ~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 343 (427)
.+..||.||....... ... -...+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 3455666665533211 111 2356888999999999999988754221 112346778888887
No 123
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.98 E-value=9.1e-05 Score=64.00 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=42.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++||-++.++.+.-...+++.+-+.|.||+|+||||-+..+++.+
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 4689999999999888888999999999999999999999998887
No 124
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=5.4e-05 Score=76.81 Aligned_cols=201 Identities=14% Similarity=0.160 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHhccC-----CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC---CCCCHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEE-----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS---RDLQLGKIQE 219 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~-----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---~~~~~~~l~~ 219 (427)
..++|.++.+.++..++... ..+++.|+|++|+||||+++.++.... ++..-|.+-. ...+...+..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccch
Confidence 46899999999999998652 345799999999999999999988761 1222232100 0001111111
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHH---H----hcCCcEEEEEeccCCcc-----ccccccc-CCCCCCCCcEEEEec
Q 042645 220 SIAKKIGLYNESWDNKSFDEKAQEIFK---T----MRNRKIVLLLDDIWELF-----DLAQVGL-PVPSRASASKVVFTT 286 (427)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~~l~~---~----L~~k~~LlVlDdv~~~~-----~~~~~~~-~l~~~~~gs~IivTt 286 (427)
.+..++..... .............. . ..+++.+|+|||+.+.. .+..+.. .+...+.-.-|++||
T Consensus 159 s~~~~~~~~~s--~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 159 SLESCFSNFQS--QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred hhhhccccccc--hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 22222211100 00001111111111 1 13567899999996542 1222222 121222223344555
Q ss_pred CChh---------HH-------hhcC--CCcceeccCCChHHHHHHHHHHhCCCCCCC-CC---CHHHHHHHHHHHcCCC
Q 042645 287 REFE---------VC-------GLMD--AHKSFKVECLGYEDAWRLFEEKVGRDILDS-HP---DIPELAETVARECGGL 344 (427)
Q Consensus 287 R~~~---------v~-------~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~-~~---~~~~~~~~i~~~~~G~ 344 (427)
-+.. .. .... ....|.++|++..+..+.+.+.+....... .. ...+....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 2211 10 1111 123589999999998888877764321111 11 1235678888889887
Q ss_pred chHHHHHHHHH
Q 042645 345 PLALITVGRAM 355 (427)
Q Consensus 345 Plai~~~~~~L 355 (427)
-..+.....++
T Consensus 317 iRsAIn~LQf~ 327 (637)
T TIGR00602 317 IRSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHHH
Confidence 66665555554
No 125
>PRK10536 hypothetical protein; Provisional
Probab=97.94 E-value=0.00021 Score=63.82 Aligned_cols=132 Identities=15% Similarity=0.165 Sum_probs=74.7
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC----CC--C---CHHH--
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS----RD--L---QLGK-- 216 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~----~~--~---~~~~-- 216 (427)
..+.++......++.++.+. ..+.+.|++|+|||+||..+..+... .+.|..++...-. +. + +..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 34567888888888888764 48999999999999999998875311 2334444332211 10 1 1111
Q ss_pred --HHHHHHHHhCCCCCCCCCCCHHHHHHHH-----------HHHhcCCcE---EEEEeccCCcccccccccCCCCCCCCc
Q 042645 217 --IQESIAKKIGLYNESWDNKSFDEKAQEI-----------FKTMRNRKI---VLLLDDIWELFDLAQVGLPVPSRASAS 280 (427)
Q Consensus 217 --l~~~i~~~l~~~~~~~~~~~~~~~~~~l-----------~~~L~~k~~---LlVlDdv~~~~~~~~~~~~l~~~~~gs 280 (427)
.+.-+...+..-. +.......+ ..+++++.+ +||+|++.+... ..+...+...+.+|
T Consensus 132 ~p~~~pi~D~L~~~~------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~s 204 (262)
T PRK10536 132 APYFRPVYDVLVRRL------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENV 204 (262)
T ss_pred HHHHHHHHHHHHHHh------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCC
Confidence 1111212221000 001111111 135667654 999999987643 33333444556889
Q ss_pred EEEEecCCh
Q 042645 281 KVVFTTREF 289 (427)
Q Consensus 281 ~IivTtR~~ 289 (427)
++|+|--..
T Consensus 205 k~v~~GD~~ 213 (262)
T PRK10536 205 TVIVNGDIT 213 (262)
T ss_pred EEEEeCChh
Confidence 999987654
No 126
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00033 Score=67.62 Aligned_cols=156 Identities=25% Similarity=0.250 Sum_probs=94.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
....+.+.|++|+|||+||..++.. ..|..+--++ ++++ .+.++......+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~m---------------iG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIIS------PEDM---------------IGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeC------hHHc---------------cCccHHHHHHHHHHH
Confidence 4567889999999999999999765 4565543322 1111 233444445555544
Q ss_pred h----cCCcEEEEEeccCCcccccccccCCCC-------------CCCCcEEE--EecCChhHHhhcCC----Ccceecc
Q 042645 248 M----RNRKIVLLLDDIWELFDLAQVGLPVPS-------------RASASKVV--FTTREFEVCGLMDA----HKSFKVE 304 (427)
Q Consensus 248 L----~~k~~LlVlDdv~~~~~~~~~~~~l~~-------------~~~gs~Ii--vTtR~~~v~~~~~~----~~~~~l~ 304 (427)
+ +..=-+||+||++..-+|-.+++.+.+ ...|.|.+ -||....+...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 4 445579999999988888766554421 12344443 46666667666552 3568899
Q ss_pred CCCh-HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 305 CLGY-EDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 305 ~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
.++. ++..+.++..-. -.+...+.++++...+| +-..|+-+..++
T Consensus 671 nl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred ccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 9987 777777776531 12334455566666666 233344444433
No 127
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00033 Score=66.31 Aligned_cols=162 Identities=8% Similarity=0.022 Sum_probs=87.0
Q ss_pred cccc-chhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 149 TVVG-MQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 149 ~~vG-R~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
.++| -+..++.+.+.+..++. +...++|+.|+||||+|..+.+..... ...... .+. .-...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~---~cg----~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE---PCG----TCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC---CCC----cCHHHHHHhcCCC
Confidence 3566 67778888888877654 456899999999999999998776211 100000 000 0001111100000
Q ss_pred C----CCCCCCCCCHHHHHHHHHHH----hcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-HHh-h
Q 042645 227 L----YNESWDNKSFDEKAQEIFKT----MRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-VCG-L 294 (427)
Q Consensus 227 ~----~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v~~-~ 294 (427)
. ..........++..+.+... ..+.+=++|+|+++.... ...+...+.....++.+|++|.+.. +.. .
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0 00000112223332222211 234556899999976532 3344444444455677777776533 222 2
Q ss_pred cCCCcceeccCCChHHHHHHHHHH
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEK 318 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~ 318 (427)
.+-...+++.+++.++..+.+...
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 233467899999999998888754
No 128
>PRK08116 hypothetical protein; Validated
Probab=97.90 E-value=4e-05 Score=70.16 Aligned_cols=101 Identities=24% Similarity=0.220 Sum_probs=58.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.|+|.+|+|||.||..+++.+.. ....+++++ ..+++..+....... ...+.. .+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~------~~~ll~~i~~~~~~~----~~~~~~----~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVN------FPQLLNRIKSTYKSS----GKEDEN----EIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEE------HHHHHHHHHHHHhcc----ccccHH----HHHHHhc
Confidence 45889999999999999999999832 223455554 445666665554321 111222 2334444
Q ss_pred CCcEEEEEeccCC--cccccc--cccCCCC-CCCCcEEEEecCC
Q 042645 250 NRKIVLLLDDIWE--LFDLAQ--VGLPVPS-RASASKVVFTTRE 288 (427)
Q Consensus 250 ~k~~LlVlDdv~~--~~~~~~--~~~~l~~-~~~gs~IivTtR~ 288 (427)
+-. ||||||+.. ..+|.. +...+.. ...+..+|+||..
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 444 899999943 334432 2222211 1245568888875
No 129
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=0.00065 Score=63.45 Aligned_cols=182 Identities=11% Similarity=0.064 Sum_probs=96.3
Q ss_pred hhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCC-c-EE--EEEEeCCCCCHHHHHHHHHHHhCCC
Q 042645 154 QSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDF-D-FV--IWEVVSRDLQLGKIQESIAKKIGLY 228 (427)
Q Consensus 154 ~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~-~~--~wv~~~~~~~~~~l~~~i~~~l~~~ 228 (427)
+...+++...+..+.. ..+.++|+.|+||+++|..+++.+.-....- . +. -++..+..+|...+. ..+
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~-------~~p 82 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS-------FIP 82 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe-------cCC
Confidence 3456677777766654 4688999999999999999887663211000 0 00 000000001100000 000
Q ss_pred CCCC----CCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCCh-hHH-hhc
Q 042645 229 NESW----DNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREF-EVC-GLM 295 (427)
Q Consensus 229 ~~~~----~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~ 295 (427)
.... .....++ ++.+.+.+ .+++-++|+|+++.... -..+...+-....++.+|++|.+. .+. ...
T Consensus 83 ~~~~~k~~~~I~idq-IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 83 NRTGDKLRTEIVIEQ-VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR 161 (319)
T ss_pred CcccccccccccHHH-HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH
Confidence 0000 0111222 22233322 24566999999986532 223333333334466677776653 332 222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+-...+.+.+++.+++.+.+... + .+ ...+..++..++|.|+....+.
T Consensus 162 SRCq~i~~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 162 SRCQRLEFKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhheEeeCCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 23456889999999999888764 1 11 1226678999999998665443
No 130
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.89 E-value=0.0005 Score=65.52 Aligned_cols=200 Identities=15% Similarity=0.238 Sum_probs=123.0
Q ss_pred chhhHHHHHHHhccCCCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCcEEEEEEeCCC---CCHHHHHHHHHHHhCCC
Q 042645 153 MQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFDFVIWEVVSRD---LQLGKIQESIAKKIGLY 228 (427)
Q Consensus 153 R~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~---~~~~~l~~~i~~~l~~~ 228 (427)
|.+..++|..||.+..-..|.|.||-|+||+.|+ .++.++. ..++.+.|.+- .+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999987789999999999999999 7776654 12666665432 34455666666666542
Q ss_pred C-----------------------CCCCCCCHHHHHHHHHH----Hh-----------------------c---CCcEEE
Q 042645 229 N-----------------------ESWDNKSFDEKAQEIFK----TM-----------------------R---NRKIVL 255 (427)
Q Consensus 229 ~-----------------------~~~~~~~~~~~~~~l~~----~L-----------------------~---~k~~Ll 255 (427)
. .++. .+.+.....+.+ .| . .++=+|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfS-es~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVV 152 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFS-ESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVV 152 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEE
Confidence 1 1111 222222222111 11 1 125589
Q ss_pred EEeccCCccc-----ccc---cccCCCCCCCCcEEEEecCChhHHh----hc--CCCcceeccCCChHHHHHHHHHHhCC
Q 042645 256 LLDDIWELFD-----LAQ---VGLPVPSRASASKVVFTTREFEVCG----LM--DAHKSFKVECLGYEDAWRLFEEKVGR 321 (427)
Q Consensus 256 VlDdv~~~~~-----~~~---~~~~l~~~~~gs~IivTtR~~~v~~----~~--~~~~~~~l~~L~~~e~~~lf~~~~~~ 321 (427)
|+|++....+ |+. +...+..+ +=.+||++|-+..... .+ ...+.+.|...+++.|.++...+...
T Consensus 153 VIdnF~~k~~~~~~iy~~laeWAa~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 153 VIDNFLHKAEENDFIYDKLAEWAASLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEcchhccCcccchHHHHHHHHHHHHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 9999864321 111 11122222 2346777776644422 22 23467899999999999999998854
Q ss_pred CCCC------------CC-----CCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCCh
Q 042645 322 DILD------------SH-----PDIPELAETVARECGGLPLALITVGRAMASKKAP 361 (427)
Q Consensus 322 ~~~~------------~~-----~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~ 361 (427)
.... .+ .....-....+...||==.=+..+++.++...++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 3100 00 1233446677888999999999999999886544
No 131
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00043 Score=63.83 Aligned_cols=169 Identities=18% Similarity=0.229 Sum_probs=101.2
Q ss_pred cccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHH
Q 042645 150 VVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGK 216 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (427)
+=|-++.+++|.+.+.- +.++-|.+||++|.|||-||+.|+++- ...| +.+.. .+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----Irvvg----SE 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVG----SE 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEecc----HH
Confidence 44678888888887642 256779999999999999999999986 2333 33322 12
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEeccCCccc----------------ccccccCCCC--CC
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR-NRKIVLLLDDIWELFD----------------LAQVGLPVPS--RA 277 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~----------------~~~~~~~l~~--~~ 277 (427)
+.+..-. .-..++..+.+.-+ ..+++|.+|+++.... .-++...+.. ..
T Consensus 221 ----lVqKYiG--------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 221 ----LVQKYIG--------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ----HHHHHhc--------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 2222111 11345556666554 5789999999975311 1122222221 23
Q ss_pred CCcEEEEecCChhHHh--hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 278 SASKVVFTTREFEVCG--LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 278 ~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
...|||..|...+... .+. -...|+++.-+.+.-.++|+-+...-....+-+ .+.|++.|.|.--
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sG 358 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSG 358 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCch
Confidence 4568888887655421 222 235678886666666678877765544333344 4666777777654
No 132
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00025 Score=69.57 Aligned_cols=169 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred ccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHH
Q 042645 149 TVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGK 216 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (427)
++=|.+..+.+|.+.+.. ...+-|.+||++|+|||.||+.++++. . +-++.++..
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-G-------VPFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-C-------CceEeecch-----
Confidence 456788888888777642 245678999999999999999999988 2 223333322
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc---cc----------cccccCC---CCC-CCC
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF---DL----------AQVGLPV---PSR-ASA 279 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~----------~~~~~~l---~~~-~~g 279 (427)
+|.... .+.++..+.+.+.+.-..-++++++|+++... +| .++...+ ... ..|
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122111 23444555555556666789999999997531 11 1221111 111 112
Q ss_pred cEEE-E--ecCChhHHhhcC----CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 042645 280 SKVV-F--TTREFEVCGLMD----AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL 344 (427)
Q Consensus 280 s~Ii-v--TtR~~~v~~~~~----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 344 (427)
-.|| | |+|...+-..+. -.+.|.+.--++.+-.+++...+.+-....+-+ .++|++.+-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 2233 3 556554422221 235677877777777777777664333222223 56666666664
No 133
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.0012 Score=61.89 Aligned_cols=177 Identities=9% Similarity=0.033 Sum_probs=96.7
Q ss_pred hhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC-----CC
Q 042645 155 STLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG-----LY 228 (427)
Q Consensus 155 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~-----~~ 228 (427)
...+.|.+.+..+. .....++|+.|+||+++|..++....-... ... ..++.-...+.+...-. +.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~-~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTP-QGD-------QPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCC-CCC-------CCCCCCHHHHHHhcCCCCCEEEEc
Confidence 34556777776654 457789999999999999999877632110 000 00000011111110000 00
Q ss_pred CCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHH-hhcCCCc
Q 042645 229 NESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVC-GLMDAHK 299 (427)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~~~~~ 299 (427)
.........++.. .+.+.+ .+++=++|+|+++... ....+...+-....++.+|++|.+. .+. ...+-..
T Consensus 81 p~~~~~I~id~iR-~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQVR-EINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHHHH-HHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0000112233332 233332 2566688999998653 2334433443344566777777654 333 2223346
Q ss_pred ceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHH
Q 042645 300 SFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLAL 348 (427)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 348 (427)
.+.+.+++.+++.+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 78999999999999998764211 112566788899999744
No 134
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.82 E-value=0.00014 Score=68.63 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=65.6
Q ss_pred hHHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC
Q 042645 156 TLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDF-VIWEVVSR-DLQLGKIQESIAKKIGLYNESW 232 (427)
Q Consensus 156 ~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~ 232 (427)
...++++.+.. +....+.|+|.+|+|||||++.+++... ..+-+. ++|+.+.+ ...+.++++.+...+.......
T Consensus 119 ~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de 196 (380)
T PRK12608 119 LSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDR 196 (380)
T ss_pred hhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCC
Confidence 34457777653 3445689999999999999999988773 223333 46666654 4578888888888766543111
Q ss_pred CCCC---HHHHHHHHHHHh--cCCcEEEEEeccCC
Q 042645 233 DNKS---FDEKAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 233 ~~~~---~~~~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.... .......+-+++ ++++++||+|++..
T Consensus 197 ~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 197 PPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 1111 111111222222 47999999999853
No 135
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.80 E-value=0.00026 Score=59.59 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=72.3
Q ss_pred cchhhHHHHHHHhccCCCe-EEEEEecCCCcHHHHHHHHHhhccCCCCC-----------------CcEEEEEEeCCCCC
Q 042645 152 GMQSTLDRVWRCLTEEPVG-IVGLYGMGGVGKTTLLTQINNSFLHTPND-----------------FDFVIWEVVSRDLQ 213 (427)
Q Consensus 152 GR~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-----------------f~~~~wv~~~~~~~ 213 (427)
|-+...+.|.+.+..+..+ .+.++|+.|+||+++|..+++........ .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS--
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc--
Confidence 5567778888888777654 57999999999999999998876321111 111222221111
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEec
Q 042645 214 LGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTT 286 (427)
Q Consensus 214 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTt 286 (427)
......++.. .+.+.+ .++.=++|+||++.. .....+...+-....++.+|++|
T Consensus 79 ------------------~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 79 ------------------KKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp ------------------SSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred ------------------cchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 0012222222 333332 235669999999865 33444444444445678888888
Q ss_pred CChhH--HhhcCCCcceeccCCC
Q 042645 287 REFEV--CGLMDAHKSFKVECLG 307 (427)
Q Consensus 287 R~~~v--~~~~~~~~~~~l~~L~ 307 (427)
.+..- .....-...+.+.+++
T Consensus 140 ~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTSEEEEE----
T ss_pred CChHHChHHHHhhceEEecCCCC
Confidence 87542 2222233455666553
No 136
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.0013 Score=61.45 Aligned_cols=176 Identities=10% Similarity=0.042 Sum_probs=96.5
Q ss_pred hhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC-----C
Q 042645 155 STLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL-----Y 228 (427)
Q Consensus 155 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~-----~ 228 (427)
...+++.+.+..+. ...+.++|+.|+||+++|..+++...-...... .++.. ...+.+...-.. .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~-----~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE-----ACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCC----HHHHHHHcCCCCCEEEEe
Confidence 34566666666554 457889999999999999999876531110000 00000 011111100000 0
Q ss_pred CC-CCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHH-hhcCCC
Q 042645 229 NE-SWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVC-GLMDAH 298 (427)
Q Consensus 229 ~~-~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~~~~ 298 (427)
.. .......++.. .+.+.+ .++.=++|+|+++... ....+...+-....++.+|++|.+. .+. ...+-.
T Consensus 81 p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC 159 (319)
T PRK06090 81 PEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC 159 (319)
T ss_pred cCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 00 00112333332 233333 2445689999998653 3444444443334566666666654 333 333334
Q ss_pred cceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 299 KSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
..+.+.+++.+++.+.+.... .+ ....+++.++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQG------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcC------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 678999999999999887642 11 1356788999999876544
No 137
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=5.9e-05 Score=63.87 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=28.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEE
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIW 205 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 205 (427)
+.|.|+|++|+||||||+.+++......-+|+..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987333356777666
No 138
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.77 E-value=9.9e-05 Score=72.56 Aligned_cols=187 Identities=16% Similarity=0.194 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
++++|.+.....|.+.+..+. .......|+-|+||||+|+.++..+--... ....+++.-...++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcCCc
Confidence 457999999999999998764 345677899999999999999887621110 00111111122222322200
Q ss_pred CCC---CCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChh-H-Hhh
Q 042645 227 LYN---ESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFE-V-CGL 294 (427)
Q Consensus 227 ~~~---~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~-v-~~~ 294 (427)
.+. +.......++.. .|.+.. +++.=+.|+|+|+-. ..|..+...+-........|+.|++.+ + ...
T Consensus 88 ~DviEiDaASn~gVddiR-~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TI 166 (515)
T COG2812 88 IDVIEIDAASNTGVDDIR-EIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTI 166 (515)
T ss_pred ccchhhhhhhccChHHHH-HHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhh
Confidence 000 000111222222 222222 345569999999744 456666555543344556666666543 3 233
Q ss_pred cCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 295 MDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 295 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
.+-...|.+..++.++....+...+...+...+ .+....|++..+|...
T Consensus 167 lSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 167 LSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 344567999999999999999988876554333 3446677777777554
No 139
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.76 E-value=0.00032 Score=69.43 Aligned_cols=174 Identities=16% Similarity=0.095 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHh---cc-------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 148 PTVVGMQSTLDRVWRCL---TE-------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
.++.|.+..++.+.+.. .. ...+-|.++|++|+|||.+|+.+++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~------~l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVG------KL 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhH------Hh
Confidence 35677776666555422 11 235679999999999999999999987 2222 111111 11
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----c----------cccccCCCCCCCCcEEE
Q 042645 218 QESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----L----------AQVGLPVPSRASASKVV 283 (427)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----~----------~~~~~~l~~~~~gs~Ii 283 (427)
.. . ..+.+...+.+.+...-...+++|++|+++.... . ..+...+.....+.-||
T Consensus 296 ~~----~-------~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vI 364 (489)
T CHL00195 296 FG----G-------IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVV 364 (489)
T ss_pred cc----c-------ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEE
Confidence 11 0 0111222222222222235899999999974311 0 01111111122233455
Q ss_pred EecCChhH-Hhhc----CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 284 FTTREFEV-CGLM----DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 284 vTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
.||.+... ...+ .-...+.++.-+.++-.++|+.+.......... ......+++.+.|.--
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfSG 430 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFSG 430 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCCH
Confidence 56654332 1111 223567888889999999999887543211101 1125677777777554
No 140
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00029 Score=70.51 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=90.4
Q ss_pred CCccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
..+-+|-++.+++|++.|.- -..++++++|+||+|||+|++.+++.. ...|-. ++++.--|..++-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIR-- 393 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIR-- 393 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhc--
Confidence 34569999999999998841 256899999999999999999999987 333322 2333322322221
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---------ccccccC-----CCC-----CCCCcE
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---------LAQVGLP-----VPS-----RASASK 281 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---------~~~~~~~-----l~~-----~~~gs~ 281 (427)
.+....-+.=+..+++.+.+. ..+.=+++||+++.... +-++..+ |.+ .-.=|.
T Consensus 394 ------GHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 394 ------GHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ------cccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 110000111122333333322 34667899999975411 1111111 100 001133
Q ss_pred -EEEecCCh-h-H-HhhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 282 -VVFTTREF-E-V-CGLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 282 -IivTtR~~-~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
+.|||-|. + + ..++.--..|++.+.+++|=.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44555442 2 1 3444555789999999999988888765
No 141
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.73 E-value=0.00032 Score=73.84 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|.+..+++|.+.+.- ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999998888777631 234578899999999999999999876 2222 222211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCCCC-CCCcE
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVPSR-ASASK 281 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~-~~gs~ 281 (427)
++.. .. .......+...+.......+.+|+|||++.... ...+...+... ..+..
T Consensus 247 ~i~~----~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EIMS----KY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HHhc----cc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 00 111122233333344456788999999865311 11121112111 22333
Q ss_pred EEE-ecCChh-HHhhcC----CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 282 VVF-TTREFE-VCGLMD----AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 282 Iiv-TtR~~~-v~~~~~----~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
++| ||.... +...+. -...+.+...+.++-.++++..........+. ....+++.+.|..-
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCH
Confidence 444 443322 211111 13457788888888888888655332211111 25667788888654
No 142
>PRK07261 topology modulation protein; Provisional
Probab=97.72 E-value=0.0001 Score=62.75 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=41.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRN 250 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 250 (427)
.|.|+|++|+||||||+.+........-+.+...|-.. ....+.++....+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 48999999999999999998775211223444444111 1223345666666677766
Q ss_pred CcEEEEEeccC
Q 042645 251 RKIVLLLDDIW 261 (427)
Q Consensus 251 k~~LlVlDdv~ 261 (427)
.+ .|+|+..
T Consensus 59 ~~--wIidg~~ 67 (171)
T PRK07261 59 HD--WIIDGNY 67 (171)
T ss_pred CC--EEEcCcc
Confidence 65 6778763
No 143
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.70 E-value=0.0016 Score=61.70 Aligned_cols=41 Identities=20% Similarity=0.397 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 154 QSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 154 ~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
+...+.|.+.+.+ ...-+|+|.|.=|+||||+.+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455667777765 3677999999999999999999999883
No 144
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.70 E-value=0.00029 Score=73.95 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=86.8
Q ss_pred CCccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
..+.+|.+..+++|++++.. ....++.++|++|+||||+++.++... ...|.. ++.+...+...+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~---i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVR---MALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEE---EEcCCCCCHHHhccc
Confidence 45579999999999988752 245689999999999999999999876 222322 333333333222111
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-c-----cccccCCC---------------CCCCC
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-L-----AQVGLPVP---------------SRASA 279 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-~-----~~~~~~l~---------------~~~~g 279 (427)
-... .+..+..+...+...- ...-+++||+++.... . ..+...+. ..-.+
T Consensus 395 ~~~~--------~g~~~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTY--------IGSMPGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhcc--------CCCCCcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1000 1111223333333221 2334788999975421 0 11111111 01123
Q ss_pred cEEEEecCChhHH-hhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 280 SKVVFTTREFEVC-GLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 280 s~IivTtR~~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
.-+|.|+.+..+. ...+-...+.+.+++.+|-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 3344455433221 112223568999999999998888776
No 145
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.70 E-value=0.00081 Score=70.88 Aligned_cols=171 Identities=18% Similarity=0.162 Sum_probs=94.6
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~----~ 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRG----P 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----H
Confidence 467888777777665531 134568999999999999999999886 2222 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--------------ccccccCCCC--CCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--------------LAQVGLPVPS--RASA 279 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~--~~~g 279 (427)
+++ ... .+.+...+...+...-...+.+|++|+++.... ...+...+.. ...+
T Consensus 522 ~l~----~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 EIL----SKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred HHh----hcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111 111 112222222333333346789999999974311 0111111211 1223
Q ss_pred cEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 280 SKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 280 s~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
.-||.||....... .+ .-...+.++..+.++-.++|+............+ ...+++.|.|.--
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~sg 658 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYTG 658 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCCH
Confidence 44555665443311 11 1245678899999999999987664333222222 4667778887653
No 146
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0026 Score=60.02 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=56.6
Q ss_pred CCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCC-hhHH-hhcCCCcceeccCCChHHHHHHHHHHhCCCCCC
Q 042645 250 NRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTRE-FEVC-GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILD 325 (427)
Q Consensus 250 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~-~~v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~ 325 (427)
++.=++|+|+++.. .....+...+-....++.+|++|.+ ..+. ...+-...+.+.+++.++..+.+... +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 45568999999865 3344444444444556666655555 4443 22233467899999999999999775 11
Q ss_pred CCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 326 SHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 326 ~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
. . ...++..++|.|+....+
T Consensus 206 ~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 A--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C--h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 233577889999755433
No 147
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0023 Score=60.47 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=96.9
Q ss_pred hhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCC--CcEE-----EEEEeCCCCCHHHHHHHHHHHhC
Q 042645 155 STLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPND--FDFV-----IWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 155 ~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f~~~-----~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..-+++.+.+..+. ...+.++|+.|+||+++|..++..+.-.... -.|- -++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 34567777776654 5678899999999999999988776311100 0000 000001111110000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHH-hhcCC
Q 042645 227 LYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVC-GLMDA 297 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~-~~~~~ 297 (427)
+.........++..+ +.+.+ .+++=++|+|+++... ....+...+-....++.+|++|.+. .+. ...+-
T Consensus 81 -p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR 158 (334)
T PRK07993 81 -PEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158 (334)
T ss_pred -cccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc
Confidence 000001123333332 33322 2566799999998653 2333433343334566677666653 343 22233
Q ss_pred CcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 298 HKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 298 ~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
...+.+.+++.+++.+.+....+. + .+.+..++..++|.|....
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 159 CRLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 456899999999999888764321 1 2236778999999997443
No 148
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.64 E-value=0.0013 Score=60.17 Aligned_cols=56 Identities=25% Similarity=0.229 Sum_probs=36.4
Q ss_pred hhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 155 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 155 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
..++++..++..+ ..|.|.|++|+|||+||+.+++.. .. ..+.++++...+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHHh
Confidence 3445555555543 347799999999999999998754 22 23455666555555544
No 149
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0012 Score=65.69 Aligned_cols=170 Identities=18% Similarity=0.193 Sum_probs=93.5
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++=|-++.+.+|.+.+.- ...+-|.++|+||+|||++|+.+++.. .-.| +++.. .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkg----p 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKG----P 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccC----H
Confidence 334477766666655531 256789999999999999999999987 3333 22221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCCCCCCC-cE
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVPSRASA-SK 281 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~g-s~ 281 (427)
+++... -+.++..+.+.+.+.-+--+++|.||+++.... +..+...+...... ..
T Consensus 503 EL~sk~-----------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ELFSKY-----------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred HHHHHh-----------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111111 223334444444444445779999999875311 11121222221222 22
Q ss_pred EEE--ecCChhH-HhhcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 282 VVF--TTREFEV-CGLMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 282 Iiv--TtR~~~v-~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
+|| |-|...+ ...+. ....+.+++-+.+--.++|+.++........-++ .+|++++.|.-
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl----~~La~~T~g~S 637 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDL----EELAQATEGYS 637 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccH----HHHHHHhccCC
Confidence 333 3333333 22233 3456777777888888999998865543333344 45555555544
No 150
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.63 E-value=0.00036 Score=73.34 Aligned_cols=46 Identities=28% Similarity=0.502 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.+.+.+.. + ...++.++|++|+|||+||+.+++.+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578999888888888752 1 23468899999999999999999876
No 151
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.63 E-value=0.0002 Score=62.26 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=53.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNESW-DNKSFDEKAQEIFK 246 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 246 (427)
++++.++|+.|+||||.+.+++..+. .. -..+..++... .....+-++..++.++.+.... ...++.+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 36899999999999999999888872 22 44566676543 2345667778888888653211 22344444443333
Q ss_pred HhcCCc-EEEEEecc
Q 042645 247 TMRNRK-IVLLLDDI 260 (427)
Q Consensus 247 ~L~~k~-~LlVlDdv 260 (427)
.++.++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333333 36777765
No 152
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.63 E-value=0.0011 Score=60.59 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=101.2
Q ss_pred CccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH-HHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL-GKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~-~~l~~~i~ 222 (427)
..++|-.++...+-.++.. ++...+.|+|+.|.|||+|......+. +..-+..+-|......-. .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~---q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI---QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH---HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4578888888888888764 566779999999999999988887774 233334444555443322 23455666
Q ss_pred HHhCCCCCC--CCCCCHHHHHHHHHHHhc------CCcEEEEEeccCCccc-------ccccccCCCCCCCCcEEEEecC
Q 042645 223 KKIGLYNES--WDNKSFDEKAQEIFKTMR------NRKIVLLLDDIWELFD-------LAQVGLPVPSRASASKVVFTTR 287 (427)
Q Consensus 223 ~~l~~~~~~--~~~~~~~~~~~~l~~~L~------~k~~LlVlDdv~~~~~-------~~~~~~~l~~~~~gs~IivTtR 287 (427)
.++...... ....+..+...++...|+ +.++++|+|+++-... +.-+...-....+=|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 555332111 012233444555555554 2468999998864211 1111111112344566778999
Q ss_pred ChhH-------HhhcCCCcceeccCCChHHHHHHHHHHhC
Q 042645 288 EFEV-------CGLMDAHKSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 288 ~~~v-------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
-.-. -........+-+++++-++-..++++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 7432 22222223566788899999999998873
No 153
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.62 E-value=0.00015 Score=64.31 Aligned_cols=35 Identities=26% Similarity=0.391 Sum_probs=29.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV 208 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 208 (427)
.++|.|..|+|||||+..+.... ...|.++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 57899999999999999998877 567877776654
No 154
>PRK08181 transposase; Validated
Probab=97.60 E-value=0.00011 Score=67.02 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=57.1
Q ss_pred HHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHH
Q 042645 162 RCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKA 241 (427)
Q Consensus 162 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~ 241 (427)
+|+.. ...+.|+|++|+|||.||..+.+... .....++|++ ..+++..+..... ..+.....
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~------~~~L~~~l~~a~~-------~~~~~~~l 162 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTR------TTDLVQKLQVARR-------ELQLESAI 162 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeee------HHHHHHHHHHHHh-------CCcHHHHH
Confidence 45443 34599999999999999999998762 1223445543 3456655543321 11222222
Q ss_pred HHHHHHhcCCcEEEEEeccCCc--ccc--cccccCCCCCCCCcEEEEecCCh
Q 042645 242 QEIFKTMRNRKIVLLLDDIWEL--FDL--AQVGLPVPSRASASKVVFTTREF 289 (427)
Q Consensus 242 ~~l~~~L~~k~~LlVlDdv~~~--~~~--~~~~~~l~~~~~gs~IivTtR~~ 289 (427)
. .+ .+.=||||||+... ..+ ..+...+.....+..+||||...
T Consensus 163 ~----~l-~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 A----KL-DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred H----HH-hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 2 22 23459999999643 111 12222222111123588888763
No 155
>PRK04296 thymidine kinase; Provisional
Probab=97.58 E-value=6.1e-05 Score=65.34 Aligned_cols=113 Identities=17% Similarity=0.074 Sum_probs=64.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
.++.|+|+.|.||||++..++.+.. .+...++.+. ..++.......++..++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999988772 2223344342 1112222234455666543322112334555555555 33
Q ss_pred CCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChh
Q 042645 250 NRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 250 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
++.-+||+|++.-. ++..++...+ ...|..|++|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 45569999998543 1122222221 245778999998844
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=97.57 E-value=0.0013 Score=68.85 Aligned_cols=157 Identities=11% Similarity=0.004 Sum_probs=94.3
Q ss_pred cCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEE
Q 042645 177 MGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLL 256 (427)
Q Consensus 177 ~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 256 (427)
|.++||||+|..+++++. ..+.-..++-++.+....... .++++..+....+ . -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~----~------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINV-IREKVKEFARTKP----I------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC----c------------CCCCCEEEE
Confidence 788999999999999872 111122456666665444443 3333333211100 0 012457999
Q ss_pred EeccCCcc--cccccccCCCCCCCCcEEEEecCChh-HH-hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHH
Q 042645 257 LDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-VC-GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPE 332 (427)
Q Consensus 257 lDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~ 332 (427)
+|+++... ....+...+......+++|++|.+.. +. ....-...+.+.+++.++....+...+...+...+ .+
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HH
Confidence 99998763 34444444433344566777666543 22 22233467899999999999888877654332222 45
Q ss_pred HHHHHHHHcCCCchHHHHHHHH
Q 042645 333 LAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 333 ~~~~i~~~~~G~Plai~~~~~~ 354 (427)
....|++.|+|.+..+..+...
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 6889999999988766554443
No 157
>PRK06526 transposase; Provisional
Probab=97.53 E-value=9.9e-05 Score=66.85 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=43.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.|+|++|+|||+||..+.+.... . .+ .+.|+ +..+++..+..... ..... ..+.. +
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~-~-g~-~v~f~------t~~~l~~~l~~~~~-------~~~~~---~~l~~-l 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ-A-GH-RVLFA------TAAQWVARLAAAHH-------AGRLQ---AELVK-L 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH-C-CC-chhhh------hHHHHHHHHHHHHh-------cCcHH---HHHHH-h
Confidence 456899999999999999999887621 1 12 23332 34455555543321 11111 22222 2
Q ss_pred cCCcEEEEEeccCCc
Q 042645 249 RNRKIVLLLDDIWEL 263 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~ 263 (427)
.+.-|||+||+...
T Consensus 158 -~~~dlLIIDD~g~~ 171 (254)
T PRK06526 158 -GRYPLLIVDEVGYI 171 (254)
T ss_pred -ccCCEEEEcccccC
Confidence 24568999999743
No 158
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.50 E-value=0.00049 Score=69.33 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=39.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.+...+..+....+.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999988776666678999999999999999997643
No 159
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.0005 Score=61.45 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCCHHH---H
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK----IGLYNESWDNKSFDE---K 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~----l~~~~~~~~~~~~~~---~ 240 (427)
...++.|+|.+|+|||+++.+++.... .....++|++.. .++...+. ++... +.....-....+..+ .
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 457999999999999999999987762 234677888877 45544432 23222 000000001122222 3
Q ss_pred HHHHHHHhcCCcEEEEEeccC
Q 042645 241 AQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 241 ~~~l~~~L~~k~~LlVlDdv~ 261 (427)
+..+...+..+.-++|+|.+.
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 334444444677799999974
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.44 E-value=0.0012 Score=70.39 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=37.9
Q ss_pred CCccccchhhHHHHHHHhcc-------CC--CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------EP--VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..++.+.+.+.. ++ ..++.++|+.|+|||+||+.+++..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34688999998888888752 12 2478899999999999999998876
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.44 E-value=0.00048 Score=73.17 Aligned_cols=47 Identities=26% Similarity=0.445 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..+..+.+.+.. + ...++.++|++|+|||.||+.++..+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999888742 2 23478999999999999999998877
No 162
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.0045 Score=54.74 Aligned_cols=170 Identities=15% Similarity=0.229 Sum_probs=94.8
Q ss_pred CccccchhhHHH---HHHHhccC------CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 148 PTVVGMQSTLDR---VWRCLTEE------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 148 ~~~vGR~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
++++|.+..+.+ |++.|.++ -++.|..+|++|.|||.+|+.+++.. +-.| +.+. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~-----l~vk----at~l- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL-----LLVK----ATEL- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce-----EEec----hHHH-
Confidence 357888876544 46666553 46789999999999999999999987 2222 1111 1111
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCc----------ccc----cccccCCC--CCCCCcE
Q 042645 219 ESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWEL----------FDL----AQVGLPVP--SRASASK 281 (427)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~----~~~~~~l~--~~~~gs~ 281 (427)
|.+..| +....+..+.+.- +.-+|++.+|+++.. .+. ..+...+. ..+.|..
T Consensus 188 --iGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 188 --IGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred --HHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 111111 2233334444333 347999999998743 111 11211221 1234554
Q ss_pred EEEecCChhHHhh-c--CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 282 VVFTTREFEVCGL-M--DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 282 IivTtR~~~v~~~-~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
.|-.|.+.++... . .-...|+...-+.+|-.+++...+..-....... .+.++++.+|+.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 5555555443221 1 1234577777788999999888774322111112 566777777754
No 163
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00067 Score=67.81 Aligned_cols=155 Identities=17% Similarity=0.117 Sum_probs=87.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL--QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
..+.|.|.|+.|+|||+||+.+++.+. +++.-++.+++++.-. ....+++. +...+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~-------------------l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKF-------------------LNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHH-------------------HHHHHH
Confidence 345789999999999999999999983 5566667777766431 12222111 122334
Q ss_pred HHhcCCcEEEEEeccCCcc--------ccc-----------ccccCCCCCCCCcE--EEEecCChhH-HhhcC----CCc
Q 042645 246 KTMRNRKIVLLLDDIWELF--------DLA-----------QVGLPVPSRASASK--VVFTTREFEV-CGLMD----AHK 299 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv~~~~--------~~~-----------~~~~~l~~~~~gs~--IivTtR~~~v-~~~~~----~~~ 299 (427)
+.+.-.+-+|||||++... +|. ++...+ ...+.+ +|.|.....- ...+. ...
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQI 566 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEE
Confidence 4566789999999997431 121 111111 122333 3444443221 11111 224
Q ss_pred ceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-chHH
Q 042645 300 SFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL-PLAL 348 (427)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai 348 (427)
.+.|.++...+-.++++..+.... .........-+..+|+|. |.-+
T Consensus 567 ~~~L~ap~~~~R~~IL~~~~s~~~---~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 567 VIALPAPAVTRRKEILTTIFSKNL---SDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred EEecCCcchhHHHHHHHHHHHhhh---hhhhhHHHHHHHHhcCCccchhH
Confidence 568899988888787777653222 111223345588888883 4433
No 164
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.00089 Score=60.27 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=46.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
+...+.|+|++|+|||+||..+++.+. .....++++++ .+++..+-....- ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhc------cchHH----HHHHH
Confidence 346789999999999999999999883 22233455543 3455555444321 11111 22222
Q ss_pred hcCCcEEEEEeccCC
Q 042645 248 MRNRKIVLLLDDIWE 262 (427)
Q Consensus 248 L~~k~~LlVlDdv~~ 262 (427)
+ .+.-||||||+..
T Consensus 161 l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 161 L-CKVDLLVLDEIGI 174 (248)
T ss_pred h-cCCCEEEEcCCCC
Confidence 2 3556999999943
No 165
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.01 Score=58.73 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=46.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+++|+|++|+||||++..++..+. .......+..++... .....+.+......++.... ...+...+...+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~- 425 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLER- 425 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHH-
Confidence 47899999999999999999887652 122223444454322 11122233333333443221 12233344433333
Q ss_pred hcCCcEEEEEeccC
Q 042645 248 MRNRKIVLLLDDIW 261 (427)
Q Consensus 248 L~~k~~LlVlDdv~ 261 (427)
+. ..=+|++|..-
T Consensus 426 l~-~~DLVLIDTaG 438 (559)
T PRK12727 426 LR-DYKLVLIDTAG 438 (559)
T ss_pred hc-cCCEEEecCCC
Confidence 33 34488888874
No 166
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0018 Score=62.84 Aligned_cols=45 Identities=27% Similarity=0.300 Sum_probs=35.8
Q ss_pred ccccch---hhHHHHHHHhccC---------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQ---STLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~---~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++-|-| .++++|++.|.++ -++-|.++|++|.|||-||+.++-..
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345655 4778888888764 24578999999999999999998776
No 167
>PRK09183 transposase/IS protein; Provisional
Probab=97.39 E-value=0.00034 Score=63.72 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998775
No 168
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.39 E-value=0.00081 Score=71.84 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=38.9
Q ss_pred CCccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..++.+.+.+.. + ...++.++|++|+|||++|+.+....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999888853 1 23578899999999999999999876
No 169
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.39 E-value=0.00014 Score=57.99 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|++|+||||+|+.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 170
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.39 E-value=0.00071 Score=60.16 Aligned_cols=208 Identities=12% Similarity=0.129 Sum_probs=118.9
Q ss_pred cccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCC----------C----
Q 042645 150 VVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNDFDFVIWEVVSRD----------L---- 212 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~----------~---- 212 (427)
+.++++....+......++.+-..++|+.|.||-|.+..+.++.-.. +-.-+..-|.+-+.. +
T Consensus 15 l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEi 94 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEI 94 (351)
T ss_pred cccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEe
Confidence 56777777788777776778999999999999999988887776210 112223344433222 0
Q ss_pred -------CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEeccCCc--ccccccccCCCCCCCCcEE
Q 042645 213 -------QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKI-VLLLDDIWEL--FDLAQVGLPVPSRASASKV 282 (427)
Q Consensus 213 -------~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~gs~I 282 (427)
.-.-+.+++++......+ + +.-..++| ++|+-.+++. +.-..++.....-...+|+
T Consensus 95 tPSDaG~~DRvViQellKevAQt~q-------------i-e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl 160 (351)
T KOG2035|consen 95 TPSDAGNYDRVVIQELLKEVAQTQQ-------------I-ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL 160 (351)
T ss_pred ChhhcCcccHHHHHHHHHHHHhhcc-------------h-hhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence 011222333332221110 0 00012344 5666666543 1111121111122345777
Q ss_pred EEecCChh-H-HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCC--
Q 042645 283 VFTTREFE-V-CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASK-- 358 (427)
Q Consensus 283 ivTtR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~-- 358 (427)
|+...+.+ + ...-.-.-.++++..+++|....+.+.+...+...+ .+++.+|+++++|+-.-...+...++-+
T Consensus 161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 77655422 1 111112235789999999999999998876654444 6779999999999776555555554432
Q ss_pred --------CChHHHHHHHHHHhhc
Q 042645 359 --------KAPREWAHAIEVLRSS 374 (427)
Q Consensus 359 --------~~~~~w~~~l~~l~~~ 374 (427)
-..-+|+-++..+...
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHH
Confidence 1245899888776554
No 171
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.0011 Score=62.76 Aligned_cols=44 Identities=27% Similarity=0.330 Sum_probs=36.1
Q ss_pred cccchhhHHHHHHHhcc-CCCeE-EEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCLTE-EPVGI-VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~-~~~~v-i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|-+....++..+..+ ++.+. +.++|++|+||||+|..+++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 56777788888888774 44444 9999999999999999999887
No 172
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.38 E-value=0.00089 Score=60.73 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=47.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
...-+.++|.+|+|||.||..+.+... .. --.+.++ +..+++..+...... ......|...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~-g~sv~f~------~~~el~~~Lk~~~~~----------~~~~~~l~~~ 164 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL--KA-GISVLFI------TAPDLLSKLKAAFDE----------GRLEEKLLRE 164 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH--Hc-CCeEEEE------EHHHHHHHHHHHHhc----------CchHHHHHHH
Confidence 556799999999999999999999983 22 2344454 345677777665542 1111222222
Q ss_pred hcCCcEEEEEeccCC
Q 042645 248 MRNRKIVLLLDDIWE 262 (427)
Q Consensus 248 L~~k~~LlVlDdv~~ 262 (427)
+ .+-=||||||+-.
T Consensus 165 l-~~~dlLIiDDlG~ 178 (254)
T COG1484 165 L-KKVDLLIIDDIGY 178 (254)
T ss_pred h-hcCCEEEEecccC
Confidence 2 2334899999864
No 173
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.38 E-value=0.00021 Score=67.10 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 149 TVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
.++|.++.++++++++.. ...+++.|+|++|+||||||..+.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999864 2457899999999999999999998873
No 174
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0034 Score=61.88 Aligned_cols=152 Identities=20% Similarity=0.226 Sum_probs=85.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
..-|.+||++|+|||-||+.|+|.. .-+| +++..+ +++... .+.++......++..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY-----------VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY-----------VGESERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH-----------hhhHHHHHHHHHHHhh
Confidence 4568899999999999999999987 3343 333322 232221 1223333333444444
Q ss_pred cCCcEEEEEeccCCcc-------c------ccccccCCCC--CCCCcEEEEecCChhHH--hhcCC---CcceeccCCCh
Q 042645 249 RNRKIVLLLDDIWELF-------D------LAQVGLPVPS--RASASKVVFTTREFEVC--GLMDA---HKSFKVECLGY 308 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~-------~------~~~~~~~l~~--~~~gs~IivTtR~~~v~--~~~~~---~~~~~l~~L~~ 308 (427)
..-+|+|.||+++... . ..++...+.. ...|--||-.|...++. ..+.+ ....-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 5689999999997531 1 1222222221 22344455555443331 11222 34566788888
Q ss_pred HHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 309 EDAWRLFEEKVGR--DILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 309 ~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
+|-.++++..... .....+-++.+++.. .+|.|..
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999999988763 223344555555543 3566654
No 175
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.38 E-value=0.0011 Score=58.43 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=54.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh-CCCCCC---CCCCCHHH---H
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI-GLYNES---WDNKSFDE---K 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-~~~~~~---~~~~~~~~---~ 240 (427)
...++.|+|++|+|||+++.+++.... .....++|++... +++..+.+. +... ...... ....+..+ .
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 457999999999999999999887662 2346789998865 555554443 2221 000000 01122222 3
Q ss_pred HHHHHHHhcC-CcEEEEEeccCC
Q 042645 241 AQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 241 ~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
...+.+.+.. +.-+||+|.+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHH
Confidence 4445555543 566999999853
No 176
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.37 E-value=0.00026 Score=61.44 Aligned_cols=129 Identities=17% Similarity=0.210 Sum_probs=61.6
Q ss_pred cchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC------CCHHHH-------H
Q 042645 152 GMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD------LQLGKI-------Q 218 (427)
Q Consensus 152 GR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~------~~~~~l-------~ 218 (427)
.+..+....++.|. +..++.+.|++|.|||.||...+-+. -..+.++.++++.-.-+ +-+.++ +
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 34455566666666 45689999999999999998887665 23477887777652211 111111 1
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHH------HHHhcCC---cEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecC
Q 042645 219 ESIAKKIGLYNESWDNKSFDEKAQEI------FKTMRNR---KIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTR 287 (427)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~l------~~~L~~k---~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR 287 (427)
.-+...+..-. .....+.+.+.= ..+++|+ ..+||+|++.+. .++..+ +...+.+|++|++--
T Consensus 81 ~p~~d~l~~~~---~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~i---lTR~g~~skii~~GD 154 (205)
T PF02562_consen 81 RPIYDALEELF---GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMI---LTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHHHHTTTS----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHH---HTTB-TT-EEEEEE-
T ss_pred HHHHHHHHHHh---ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHH---HcccCCCcEEEEecC
Confidence 11112221110 111122221100 1244553 569999999775 334444 444578899999876
Q ss_pred Ch
Q 042645 288 EF 289 (427)
Q Consensus 288 ~~ 289 (427)
..
T Consensus 155 ~~ 156 (205)
T PF02562_consen 155 PS 156 (205)
T ss_dssp --
T ss_pred ce
Confidence 53
No 177
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.36 E-value=0.00022 Score=61.02 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=43.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
+..-+.|+|++|+|||.||..+.+.... .-..+.|++ ..+++..+-.. . ......... +.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~------~~~L~~~l~~~----~---~~~~~~~~~----~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT------ASDLLDELKQS----R---SDGSYEELL----KR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE------HHHHHHHHHCC----H---CCTTHCHHH----HH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee------cCceecccccc----c---cccchhhhc----Cc
Confidence 3457999999999999999999987732 223455654 34555554321 1 111222222 22
Q ss_pred hcCCcEEEEEeccCCc
Q 042645 248 MRNRKIVLLLDDIWEL 263 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~ 263 (427)
+. +.=||||||+-..
T Consensus 106 l~-~~dlLilDDlG~~ 120 (178)
T PF01695_consen 106 LK-RVDLLILDDLGYE 120 (178)
T ss_dssp HH-TSSCEEEETCTSS
T ss_pred cc-cccEeccccccee
Confidence 32 3347889999643
No 178
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.35 E-value=0.00054 Score=63.84 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=57.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---WDNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 244 (427)
..+++.|+|++|+||||||.+++.... ..-..++|+.....+++. .+++++..... ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 557999999999999999999877762 234567788776655542 34555543211 1223455566666
Q ss_pred HHHhc-CCcEEEEEeccCC
Q 042645 245 FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~ 262 (427)
...++ +..-+||+|.+-.
T Consensus 126 ~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHHhhccCCcEEEEcchhh
Confidence 55554 4567999999854
No 179
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.35 E-value=0.0022 Score=57.32 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=57.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...++.|+|++|+|||+|+.+++....... +.-..++|++....++...+. .+....+..... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 457999999999999999999876642110 112567888887766655443 333333221100 012345
Q ss_pred HHHHHHHHHHhc----CCcEEEEEeccCC
Q 042645 238 DEKAQEIFKTMR----NRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~~~~~l~~~L~----~k~~LlVlDdv~~ 262 (427)
+++...+..... .+.-|+|+|.+..
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~ 125 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAA 125 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcch
Confidence 566655555543 3556999999854
No 180
>PRK06921 hypothetical protein; Provisional
Probab=97.35 E-value=0.00049 Score=62.92 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=28.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV 208 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 208 (427)
....+.++|.+|+|||+|+..+++... ......++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456799999999999999999999872 111344566553
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.35 E-value=0.0004 Score=73.90 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=38.0
Q ss_pred CCccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..+..+.+.+.. + ....+.++|+.|+|||+||+.+++.+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999888752 2 23467789999999999999999876
No 182
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.34 E-value=0.00053 Score=63.94 Aligned_cols=87 Identities=18% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---WDNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 244 (427)
..+++-|+|++|+||||||.+++-... ..-..++|+.....+++. .++.++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 467899999999999999999876652 234567888877665542 34445443211 1223456666666
Q ss_pred HHHhc-CCcEEEEEeccCC
Q 042645 245 FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~ 262 (427)
...++ +..-+||+|.+-.
T Consensus 126 ~~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHHhccCCCEEEEcchHh
Confidence 55554 4567999999753
No 183
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.34 E-value=0.011 Score=59.34 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=116.9
Q ss_pred CCccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccC--CC---CCCcEEEEEEeCCCCCHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLH--TP---NDFDFVIWEVVSRDLQLGK 216 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~---~~f~~~~wv~~~~~~~~~~ 216 (427)
|..+-+|+.+..+|-..+.. +....+-|.|.+|.|||..+..|.+.+.. .. ..|+. +.|+.-.-..+.+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 44567899999999888753 23458889999999999999999886631 11 23332 2334334456899
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-----CCcEEEEEeccCCccc--ccccccCCC-CCCCCcEEEEecC-
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR-----NRKIVLLLDDIWELFD--LAQVGLPVP-SRASASKVVFTTR- 287 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~~--~~~~~~~l~-~~~~gs~IivTtR- 287 (427)
++..|..++.... .......+.+..++. .+.+++++|+++.... -+-+...|. ...++|+++|.+=
T Consensus 474 ~Y~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 9999999987532 334455555555543 4678999999875421 011111121 1245666655332
Q ss_pred C-hh---------HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 288 E-FE---------VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 288 ~-~~---------v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
+ .+ ++..++ ...+.+.|.++++..++...++.....-.+...+-++++++.-.|-.-.|+..
T Consensus 549 NTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldi 620 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDI 620 (767)
T ss_pred ccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHH
Confidence 1 11 122221 24678889999998888888775443222223333455555555544444443
No 184
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.004 Score=58.62 Aligned_cols=69 Identities=9% Similarity=0.042 Sum_probs=39.0
Q ss_pred CCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-HHhh-cCCCcceeccCCChHHHHHHHHHH
Q 042645 250 NRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-VCGL-MDAHKSFKVECLGYEDAWRLFEEK 318 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~lf~~~ 318 (427)
+++-++|+|+++.... -..+...+.....++.+|++|.+.. +... ..-...+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556788875422 2222222222223465777777644 3322 223457889999999999888664
No 185
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.33 E-value=0.00063 Score=63.44 Aligned_cols=116 Identities=26% Similarity=0.210 Sum_probs=64.9
Q ss_pred cchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 152 GMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 152 GR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
+|........+++.. ...+-+.|+|..|+|||.||..+++.+. ... ..+.++++ .+++..+.....-
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEH------HHHHHHHHHHHhc
Confidence 444445545555542 2346799999999999999999999983 222 23445543 3566666555421
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccc--cccCC-CCC-CCCcEEEEecCC
Q 042645 228 YNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQ--VGLPV-PSR-ASASKVVFTTRE 288 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~--~~~~l-~~~-~~gs~IivTtR~ 288 (427)
.+..+. + +.+ .+.=||||||+... ..|.. +...+ ... ..+..+|+||.-
T Consensus 206 -------~~~~~~---l-~~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKEK---I-DAV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHHH---H-HHh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 111222 2 222 24558999999643 44532 32222 211 234557777764
No 186
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.32 E-value=0.0019 Score=57.32 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh----CCCCCCCCCCCHHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI----GLYNESWDNKSFDEK--- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l----~~~~~~~~~~~~~~~--- 240 (427)
...++.|+|.+|+||||++.+++.... ..-..++|++....+. +-+.+++... ....--....+..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 467899999999999999999987762 2334677877654443 2233333221 000000011222222
Q ss_pred HHHHHHHhcCCcEEEEEeccC
Q 042645 241 AQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 241 ~~~l~~~L~~k~~LlVlDdv~ 261 (427)
...+...+..+.-++|+|.+-
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 93 IQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHhcCCcEEEEechH
Confidence 233444444456688889874
No 187
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0019 Score=64.81 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=88.1
Q ss_pred CCccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
..+-+|.++.+++|++.+.- -+.+++..+|++|+|||++++.++..+. ..|- -++++.-.|..++-..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn---RkFf---RfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN---RKFF---RFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC---CceE---EEeccccccHHhhccc
Confidence 34569999999999998842 2568999999999999999999999883 2221 2344444444433211
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---------ccccccC----------CCCCCCCcE
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---------LAQVGLP----------VPSRASASK 281 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---------~~~~~~~----------l~~~~~gs~ 281 (427)
=-... +.=+..+++.++.. +-.+=|+.||+|+.... +-++..+ +.-.-.=|+
T Consensus 484 RRTYV--------GAMPGkiIq~LK~v-~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYV--------GAMPGKIIQCLKKV-KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeee--------ccCChHHHHHHHhh-CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhh
Confidence 00011 11112233333222 23455888999975311 1111111 110011256
Q ss_pred EEE-ecCChhH----HhhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 282 VVF-TTREFEV----CGLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 282 Iiv-TtR~~~v----~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
|++ .|-| .+ ..+..--..|++.+...+|-.++-.+++
T Consensus 555 VLFicTAN-~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 555 VLFICTAN-VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eEEEEecc-ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 654 3333 11 1222334678999999999888777665
No 188
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0008 Score=69.12 Aligned_cols=104 Identities=23% Similarity=0.365 Sum_probs=65.0
Q ss_pred CCccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
...++|.++.+..+.+.+.. + +..+....|+.|+|||-||+.++..+ .+.-+..+-+ |+.+.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~------DMSEy 560 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRI------DMSEY 560 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceee------chHHH
Confidence 35689999999999998852 2 34577789999999999999999887 2222333333 33333
Q ss_pred HH--HHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEeccCCc
Q 042645 218 QE--SIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKI-VLLLDDIWEL 263 (427)
Q Consensus 218 ~~--~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~ 263 (427)
.. .+.+-+|.+ ++.-+.+. -..|-+..+.+|| +|+||+++..
T Consensus 561 ~EkHsVSrLIGaP-PGYVGyee---GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 561 MEKHSVSRLIGAP-PGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHHhCCC-CCCceecc---ccchhHhhhcCCCeEEEechhhhc
Confidence 32 222223332 22122221 2345566677887 8999999853
No 189
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.30 E-value=0.0028 Score=65.57 Aligned_cols=148 Identities=18% Similarity=0.128 Sum_probs=79.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
+-|.|+|++|+|||++|+.+++.. ...| +.++.+ ++.. .. ...........+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~------~~~~----~~-------~g~~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGS------DFVE----MF-------VGVGASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehH------HhHH----hh-------hcccHHHHHHHHHHHHh
Confidence 459999999999999999998876 2222 122211 1111 00 11122233333333444
Q ss_pred CCcEEEEEeccCCccc------------c----cccccCCCC--CCCCcEEEEecCChhHHh--hc---CCCcceeccCC
Q 042645 250 NRKIVLLLDDIWELFD------------L----AQVGLPVPS--RASASKVVFTTREFEVCG--LM---DAHKSFKVECL 306 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~------------~----~~~~~~l~~--~~~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L 306 (427)
..+++|++|+++.... . ..+...+.. ...+.-+|.||...+... .. .-...+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 5789999999976411 0 111111111 123444555666544321 11 12356788888
Q ss_pred ChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 042645 307 GYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL 344 (427)
Q Consensus 307 ~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 344 (427)
+.++-.++++.+........+.+ ...+++.+.|.
T Consensus 323 d~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 323 DVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 88888888888775433222222 34466667663
No 190
>PRK09354 recA recombinase A; Provisional
Probab=97.29 E-value=0.00078 Score=63.35 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---WDNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 244 (427)
..+++-|+|++|+|||||+.+++.... ..-..++|+.....+++ ..++.++..... ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 467899999999999999999887662 23456789888776665 245555543211 1223455666666
Q ss_pred HHHhc-CCcEEEEEeccCC
Q 042645 245 FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~ 262 (427)
...++ +..-+||+|.+-.
T Consensus 131 ~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHHhhcCCCCEEEEeChhh
Confidence 66554 4567999999853
No 191
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0042 Score=63.61 Aligned_cols=174 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred ccccchh---hHHHHHHHhccC---------CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHH
Q 042645 149 TVVGMQS---TLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGK 216 (427)
Q Consensus 149 ~~vGR~~---~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (427)
++.|-++ ++.++++.|..+ -++=+.++|++|+|||-||+.++-.. . +-|++++.+
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 4677775 455556666553 24568999999999999999998876 1 234444432
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc-----------------ccccccCCCCCCC
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD-----------------LAQVGLPVPSRAS 278 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~~~~ 278 (427)
+..+.+.. .. ...+..+...- ...++++.+|+++...- +.++...+.....
T Consensus 379 ---EFvE~~~g-------~~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVG-------VG-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhcc-------cc-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 12222211 11 23333333333 35789999999875421 1222111211112
Q ss_pred -CcEEEE-ecCChhHH--hhcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHH
Q 042645 279 -ASKVVF-TTREFEVC--GLMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALI 349 (427)
Q Consensus 279 -gs~Iiv-TtR~~~v~--~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~ 349 (427)
+..|++ +|...++. .++. -+..+.++.-+...-.++|..++...... .+..++.+ |+...-|.+=|..
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHHH
Confidence 223333 44443332 1222 24567888888889999999988654422 34455566 8999999887654
No 192
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.28 E-value=0.0019 Score=58.08 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=56.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...++.|+|++|+|||+|+.+++-...... +....++|++....++...+. ++++..+..... ....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 457899999999999999999975431111 113578999987766655443 344443322110 011223
Q ss_pred HH---HHHHHHHHhc-C-CcEEEEEeccCC
Q 042645 238 DE---KAQEIFKTMR-N-RKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~---~~~~l~~~L~-~-k~~LlVlDdv~~ 262 (427)
++ ....+...+. . +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 33 3344444443 3 667999999854
No 193
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.28 E-value=0.00058 Score=56.74 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=62.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC---CCCHHHHHHHHHHHhCC---CC-CCCCCCCHHH---
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR---DLQLGKIQESIAKKIGL---YN-ESWDNKSFDE--- 239 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~l~~~i~~~l~~---~~-~~~~~~~~~~--- 239 (427)
..|-|++..|.||||+|...+-+.. .+-..+.++.+-+ ......++..+- .+.. .. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 4688999999999999988877652 2233455544322 334444443331 1100 00 0001111222
Q ss_pred ----HHHHHHHHhcC-CcEEEEEeccCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 042645 240 ----KAQEIFKTMRN-RKIVLLLDDIWEL-----FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 240 ----~~~~l~~~L~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
..+..++.+.. .-=|||||++-.. .+.+++...+.....+..+|+|.|+.+
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22223344444 4459999998543 223444444555556778999999854
No 194
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0015 Score=67.24 Aligned_cols=154 Identities=19% Similarity=0.324 Sum_probs=87.2
Q ss_pred ccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccC--CCCC-CcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 149 TVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLH--TPND-FDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~-f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
.++||+++++++++-|....-.--.++|.+|+|||+++.-++.+... +... -+..++ + .++..+.
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-s----LD~g~Lv------- 238 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-S----LDLGSLV------- 238 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-E----ecHHHHh-------
Confidence 47999999999999998654344557899999999999888877621 1111 111111 0 1111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEeccCCccc--------c--cc-cccCCCCCCCCcEEEEecCChhH--
Q 042645 226 GLYNESWDNKSFDEKAQEIFKTMR-NRKIVLLLDDIWELFD--------L--AQ-VGLPVPSRASASKVVFTTREFEV-- 291 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~--------~--~~-~~~~l~~~~~gs~IivTtR~~~v-- 291 (427)
. ... -..+.++..+.+.+.++ .++.+|++|.++..-. . .. +.+.|.. +.-..|-.||-++--
T Consensus 239 A--Gak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~ 314 (786)
T COG0542 239 A--GAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKY 314 (786)
T ss_pred c--ccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHH
Confidence 0 111 22344555555555554 4589999999975411 1 11 1222222 222235555554321
Q ss_pred ----HhhcCCCcceeccCCChHHHHHHHHHH
Q 042645 292 ----CGLMDAHKSFKVECLGYEDAWRLFEEK 318 (427)
Q Consensus 292 ----~~~~~~~~~~~l~~L~~~e~~~lf~~~ 318 (427)
+.+-.-.+.+.++..+.+++..+++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 111123367889999999999988754
No 195
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.00085 Score=63.08 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=53.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..+.++|++|+|||+||..+++... ..-..+++++. .+++..+...-. . ...+... . .+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~---~~g~~V~y~t~------~~l~~~l~~~~~-~----~~~~~~~---~-~~~l~ 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL---DRGKSVIYRTA------DELIEILREIRF-N----NDKELEE---V-YDLLI 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEEH------HHHHHHHHHHHh-c----cchhHHH---H-HHHhc
Confidence 6799999999999999999999873 22234566543 344444433211 0 0111111 1 22232
Q ss_pred CCcEEEEEeccCCc--ccc--cccccCCCCC-CCCcEEEEecCC
Q 042645 250 NRKIVLLLDDIWEL--FDL--AQVGLPVPSR-ASASKVVFTTRE 288 (427)
Q Consensus 250 ~k~~LlVlDdv~~~--~~~--~~~~~~l~~~-~~gs~IivTtR~ 288 (427)
.-=||||||+... ..| ..+...+... ..+..+||||..
T Consensus 246 -~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 -NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred -cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2248999999543 222 2222222211 224558888875
No 196
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.15 Score=49.06 Aligned_cols=167 Identities=20% Similarity=0.227 Sum_probs=86.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
|--.++||||.|||+++.++++.+ .|+.. =+.++...+-.+ ++.++. ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v~~n~d-Lr~LL~-----------------------~t- 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEVKLDSD-LRHLLL-----------------------AT- 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceE-EeeeccccCcHH-HHHHHH-----------------------hC-
Confidence 457899999999999999999987 23321 112221111111 222211 11
Q ss_pred CCcEEEEEeccCCcccc-----------c---------ccccCCC---CCCCCcEEE-EecCChhH--HhhcCC---Ccc
Q 042645 250 NRKIVLLLDDIWELFDL-----------A---------QVGLPVP---SRASASKVV-FTTREFEV--CGLMDA---HKS 300 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~~-----------~---------~~~~~l~---~~~~gs~Ii-vTtR~~~v--~~~~~~---~~~ 300 (427)
..+-+||+.|++...+. . .+...+. ..+.+-||| .||...+- ..++.+ ...
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 34567778887643111 1 0111111 112223555 56655432 112222 245
Q ss_pred eeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCC--ChHHHHHHHHHHhh
Q 042645 301 FKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKK--APREWAHAIEVLRS 373 (427)
Q Consensus 301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~--~~~~w~~~l~~l~~ 373 (427)
+.+.--+.+....|+.+..+.+. .+ .+..+|.+...|.-+.=..++..|-.+. .....+.+.+.|.+
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 78999999999999999987543 12 2356666655665554455554443333 22333344444433
No 197
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.0031 Score=62.93 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=40.0
Q ss_pred cccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 042645 150 VVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV 207 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 207 (427)
++--.+.++++.+||.. ...+++.++|++|+||||.++.+++.+ .|+..=|.+
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 44445677888888864 235789999999999999999999886 355566754
No 198
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.19 E-value=0.0011 Score=66.46 Aligned_cols=73 Identities=26% Similarity=0.290 Sum_probs=53.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
.-++..++|++|+||||||..++++. + ..++=++.|..-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa----G--YsVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA----G--YSVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc----C--ceEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 45799999999999999999999886 1 24567788877777766666665553221 1
Q ss_pred h--cCCcEEEEEeccCCc
Q 042645 248 M--RNRKIVLLLDDIWEL 263 (427)
Q Consensus 248 L--~~k~~LlVlDdv~~~ 263 (427)
+ .+++.-||+|+++..
T Consensus 382 l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGA 399 (877)
T ss_pred cccCCCcceEEEecccCC
Confidence 2 157888999999753
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.18 E-value=0.0025 Score=57.32 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=46.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
...+.++|.+|+|||+|+..+++.+.. .-..+++++ ..+++..+-..... ...+... +.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~-----~~~~~~~----~l~~l 160 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN-----SETSEEQ----LLNDL 160 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh-----ccccHHH----HHHHh
Confidence 357899999999999999999998832 223455553 45566555544321 1112222 33334
Q ss_pred cCCcEEEEEeccCCc
Q 042645 249 RNRKIVLLLDDIWEL 263 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~ 263 (427)
. +.=||||||+...
T Consensus 161 ~-~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c-cCCEEEEeCCCCC
Confidence 4 3448888999653
No 200
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.17 E-value=0.003 Score=52.87 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL 212 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 212 (427)
++.|+|++|+||||++..+..... ..-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 368999999999999999988872 244567777765543
No 201
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.16 E-value=0.0027 Score=59.40 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=58.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-------DNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-------~~~~~ 237 (427)
...++-|+|++|+|||+|+.+++-..... ...-..++|++....+++..+. ++++.++...... ...+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 45789999999999999998876433111 1223478999988888888765 4566666542210 11233
Q ss_pred HHHHH---HHHHHhc-CCcEEEEEeccCC
Q 042645 238 DEKAQ---EIFKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~~~~---~l~~~L~-~k~~LlVlDdv~~ 262 (427)
++..+ .+...+. .+.-|||+|.+-.
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 43333 3333333 3555899999753
No 202
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.16 E-value=0.00056 Score=59.74 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=59.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG-KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~-~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
.+|.|.|+.|+||||++..+..... ......++. +..+.... .-...+..+-. ...+.....+.+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~---~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN---KNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh---hcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 4789999999999999998887762 222323332 21111100 00000111100 1112233455667777
Q ss_pred cCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHH
Q 042645 249 RNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVC 292 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 292 (427)
+..+=++++|++.+.+......... ..|..++.|+...+..
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 7778899999997665443322221 2355677777766554
No 203
>PRK06696 uridine kinase; Validated
Probab=97.15 E-value=0.00061 Score=60.79 Aligned_cols=42 Identities=14% Similarity=0.202 Sum_probs=35.3
Q ss_pred cchhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 152 GMQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 152 GR~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|++.+++|.+.+.. +...+|+|.|.+|+||||||+.+.+.+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888887753 467899999999999999999999887
No 204
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.15 E-value=0.00069 Score=62.64 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=73.1
Q ss_pred ccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEE-E---EEeCCCC---------CHHHH
Q 042645 151 VGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVI-W---EVVSRDL---------QLGKI 217 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-w---v~~~~~~---------~~~~l 217 (427)
-+|..+..--+++|.++....|.+.|.+|.|||-||....-..--.+..|..++ . +.++++. .+.-.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PW 306 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPW 306 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccch
Confidence 456677777788999999999999999999999887654322111223333322 1 1122221 11112
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHH----------HHhcCC---cEEEEEeccCCcccccccccCCCCCCCCcEEEE
Q 042645 218 QESIAKKIGLYNESWDNKSFDEKAQEIF----------KTMRNR---KIVLLLDDIWELFDLAQVGLPVPSRASASKVVF 284 (427)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~Iiv 284 (427)
+..|...+..-... .... +..++.+. .+.+|+ .-++|+|++.+..- .++...+...+.||||+.
T Consensus 307 mq~i~DnLE~L~~~-~~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl 383 (436)
T COG1875 307 MQAIFDNLEVLFSP-NEPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVL 383 (436)
T ss_pred HHHHHhHHHHHhcc-cccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEE
Confidence 22332222111100 1111 22222221 133443 45999999987522 233344556688999999
Q ss_pred ecCCh
Q 042645 285 TTREF 289 (427)
Q Consensus 285 TtR~~ 289 (427)
|.-..
T Consensus 384 ~gd~a 388 (436)
T COG1875 384 TGDPA 388 (436)
T ss_pred cCCHH
Confidence 87543
No 205
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.15 E-value=0.0028 Score=57.05 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---------------- 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---------------- 231 (427)
...++.|.|++|+|||+++.++..... ..-..++|++... ++.++.+.+. +++.+...
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEeccccc
Confidence 567899999999999999998765541 2345678888754 4555555533 33321100
Q ss_pred ------------CCCCCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 232 ------------WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 232 ------------~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
....+.++....+.+.++. +.-++|+|.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123455666666666543 445799999854
No 206
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0019 Score=58.84 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=51.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccC-CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLH-TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
-++|.++||||.|||+|++.+++++.- ..+.+....-+.++. ..++..-... .+.-...+.++|.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins----hsLFSKWFsE--------SgKlV~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS----HSLFSKWFSE--------SGKLVAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh----hHHHHHHHhh--------hhhHHHHHHHHHHHH
Confidence 478999999999999999999998831 123333333333322 2233222221 233445666777777
Q ss_pred hcCCcE--EEEEeccCCc
Q 042645 248 MRNRKI--VLLLDDIWEL 263 (427)
Q Consensus 248 L~~k~~--LlVlDdv~~~ 263 (427)
+.++.. .+.+|+|++.
T Consensus 245 v~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HhCCCcEEEEEeHHHHHH
Confidence 776553 5568998753
No 207
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0011 Score=69.29 Aligned_cols=46 Identities=28% Similarity=0.458 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.++.++.|.+.+.. + ....+.++|++|+|||++|+.++..+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999888752 1 24578999999999999999998876
No 208
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.11 E-value=0.0014 Score=61.42 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+..++|||++|+|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999998
No 209
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.10 E-value=0.0034 Score=61.28 Aligned_cols=89 Identities=24% Similarity=0.215 Sum_probs=49.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNESW-DNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 245 (427)
...+|.++|.+|+||||++..++..+. ..+ + .+..+++.. .+...+.+..++..++.+.... ...++........
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-HcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 357899999999999999999998873 222 2 334444332 1223455666666666543211 1223333333333
Q ss_pred HHhcCCcEEEEEecc
Q 042645 246 KTMRNRKIVLLLDDI 260 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv 260 (427)
+.+.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 45777765
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.09 E-value=0.0028 Score=60.69 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=52.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|.|.+|+|||||+.+++.... .....++|++.... ..++ ..-+..++...+.. ...+.+.+.+.+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 456899999999999999999988762 22346777776433 3333 22244555433221 122334443333
Q ss_pred HHHhcCCcEEEEEeccCC
Q 042645 245 FKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~~k~~LlVlDdv~~ 262 (427)
. ..++-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 2 24677999999854
No 211
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.08 E-value=0.0042 Score=55.84 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---------------- 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---------------- 231 (427)
...++.|+|.+|+|||+|+.++..... ..-..++|++..+. +.++.+.+ .+++.....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 467899999999999999999865541 23457788887653 45555553 334322110
Q ss_pred --CCCCCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 042645 232 --WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIW 261 (427)
Q Consensus 232 --~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~ 261 (427)
....+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666777776654 66689999975
No 212
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.07 E-value=0.013 Score=55.35 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.4
Q ss_pred cccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|+...+.++.+.+.. ....-|.|+|..|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 46777777777666643 333458999999999999999997665
No 213
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.06 E-value=0.033 Score=52.21 Aligned_cols=49 Identities=27% Similarity=0.235 Sum_probs=36.3
Q ss_pred ceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHH
Q 042645 300 SFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLAL 348 (427)
Q Consensus 300 ~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai 348 (427)
.+++++++.+|+..++.-.....-.......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887754432332444556777777889999644
No 214
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.061 Score=51.46 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=39.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-CCCCHHHHHHHHHHHhCCCC
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS-RDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~~~~~~~l~~~i~~~l~~~~ 229 (427)
+.+|..+|.-|+||||.+.++++.+.. .+ ..+.-|++. ..+...+-++.+..+.+.+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk-~~--~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK-KG--KKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH-cC--CceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 468999999999999999999998832 22 223333322 22344556777778877654
No 215
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0027 Score=55.43 Aligned_cols=46 Identities=26% Similarity=0.456 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHh----ccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCL----TEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|-+...+.|++-- ......-|.+||.-|+|||+|++.+.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 45789888888876543 33456679999999999999999999988
No 216
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0041 Score=62.58 Aligned_cols=131 Identities=20% Similarity=0.146 Sum_probs=75.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+.+.++|++|.|||.||+.+++.. ..+|-.+.. . +++ ... -..+...+...+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~----~l~----sk~-------vGesek~ir~~F~~A 331 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S----ELL----SKW-------VGESEKNIRELFEKA 331 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----HHh----ccc-------cchHHHHHHHHHHHH
Confidence 45589999999999999999999965 333433221 1 111 110 122333344444455
Q ss_pred hcCCcEEEEEeccCCccccc-------------ccccCCCC--CCCCcEEEEecCChhHHh---hc--CCCcceeccCCC
Q 042645 248 MRNRKIVLLLDDIWELFDLA-------------QVGLPVPS--RASASKVVFTTREFEVCG---LM--DAHKSFKVECLG 307 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~~~~~-------------~~~~~l~~--~~~gs~IivTtR~~~v~~---~~--~~~~~~~l~~L~ 307 (427)
.+..+++|.+|+++....+. ++...+.. ...+..||-||....... .. .-...+.+++-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 56789999999997642221 11112221 122223344444332211 11 224578899999
Q ss_pred hHHHHHHHHHHhCC
Q 042645 308 YEDAWRLFEEKVGR 321 (427)
Q Consensus 308 ~~e~~~lf~~~~~~ 321 (427)
.++..+.|+.+...
T Consensus 412 ~~~r~~i~~~~~~~ 425 (494)
T COG0464 412 LEERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998864
No 217
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=97.05 E-value=0.012 Score=59.88 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|....+.++.+.+.. .....|.|+|..|+|||++|+.+.+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 35789999999998887753 334468899999999999999998765
No 218
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.04 E-value=0.0013 Score=56.27 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEE
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWE 206 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 206 (427)
...+|.+.|++|+||||+|+.+++.+ ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 34689999999999999999999888 2334444444
No 219
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.03 E-value=0.0029 Score=57.54 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...+.=|+|++|+|||.|+.+++-...- ..+.-..++|++-...+....+. +|++..+..... ....+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 4568899999999999999887644311 12234578999988888877765 566665432110 012344
Q ss_pred HHHHHHHH---HHhc-CCcEEEEEeccC
Q 042645 238 DEKAQEIF---KTMR-NRKIVLLLDDIW 261 (427)
Q Consensus 238 ~~~~~~l~---~~L~-~k~~LlVlDdv~ 261 (427)
+++...+. ..+. .+--|||+|.+-
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHhhccccceEEEEecchH
Confidence 44444333 3332 455599999974
No 220
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.02 E-value=0.00081 Score=56.88 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=45.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRN 250 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 250 (427)
++.|.|.+|+|||++|.++.... ...++++.-...++. ++...|...-.... ......+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R~---~~w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRRP---AHWRTIETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhCC---CCceEeecHHHHHHHHHh
Confidence 36899999999999999997542 235666666666554 34444443222112 122222333334444421
Q ss_pred --CcEEEEEeccC
Q 042645 251 --RKIVLLLDDIW 261 (427)
Q Consensus 251 --k~~LlVlDdv~ 261 (427)
+.-.+++|.+-
T Consensus 71 ~~~~~~VLIDclt 83 (169)
T cd00544 71 LDPGDVVLIDCLT 83 (169)
T ss_pred cCCCCEEEEEcHh
Confidence 34479999873
No 221
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0027 Score=54.10 Aligned_cols=89 Identities=17% Similarity=0.111 Sum_probs=45.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC-CCCCCCHHHHHH-HHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNE-SWDNKSFDEKAQ-EIFKT 247 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~-~~~~~~~~~~~~-~l~~~ 247 (427)
++.+.|++|+||||++..++..+.. .-..++.+..... ....+.+...+...+.+.. .....+...... .+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~---~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK---KGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA 78 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887621 1123444443321 1223334334444443211 112234444433 33333
Q ss_pred hcCCcEEEEEeccCC
Q 042645 248 MRNRKIVLLLDDIWE 262 (427)
Q Consensus 248 L~~k~~LlVlDdv~~ 262 (427)
..+..-++|+|..-.
T Consensus 79 ~~~~~d~viiDt~g~ 93 (173)
T cd03115 79 REENFDVVIVDTAGR 93 (173)
T ss_pred HhCCCCEEEEECccc
Confidence 343433566777543
No 222
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.00 E-value=0.0044 Score=58.11 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=56.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-------DNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-------~~~~~ 237 (427)
...++.|+|.+|+|||+|+..++..... ....-..++|++....+.+.. +..+++.++...... ...+.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCCh
Confidence 4678999999999999999988754311 111224678998887777765 344555555432110 11233
Q ss_pred HHHHHHH---HHHhc-CCcEEEEEeccCC
Q 042645 238 DEKAQEI---FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~~~~~l---~~~L~-~k~~LlVlDdv~~ 262 (427)
++....+ ...+. .+.-|||+|.+-.
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~a 202 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATA 202 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHH
Confidence 3333333 23333 3556899998743
No 223
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0051 Score=58.07 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=59.3
Q ss_pred HHHHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--
Q 042645 157 LDRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-- 232 (427)
Q Consensus 157 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-- 232 (427)
+.++-+.|..+ ...+|.|-|-+|+|||||..+++.++. ..- .++||+-.++ +.+ .+--++.++...+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA---~~~-~vLYVsGEES--~~Q-iklRA~RL~~~~~~l~l 151 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA---KRG-KVLYVSGEES--LQQ-IKLRADRLGLPTNNLYL 151 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcC--HHH-HHHHHHHhCCCccceEE
Confidence 33444445443 457899999999999999999999983 222 6777765543 222 233355666544321
Q ss_pred -CCCCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 042645 233 -DNKSFDEKAQEIFKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 233 -~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 262 (427)
...+.+...+.+.+ .++-|+|+|-+..
T Consensus 152 ~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 152 LAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred ehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 12333433333333 6889999999854
No 224
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.99 E-value=0.00085 Score=66.48 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=40.1
Q ss_pred ccccchhhHHHHHHHhc------cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLT------EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+++|.++.+++|++.|. +...+++.++|++|+||||||+.+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999983 3466899999999999999999999877
No 225
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.97 E-value=0.0062 Score=51.43 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCcEEEEEecc----CCcccccccccCCCCCCCCcEEEEecCChhHHhhcC
Q 042645 239 EKAQEIFKTMRNRKIVLLLDDI----WELFDLAQVGLPVPSRASASKVVFTTREFEVCGLMD 296 (427)
Q Consensus 239 ~~~~~l~~~L~~k~~LlVlDdv----~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 296 (427)
+..-.|...+-+++-+|+-|+- +....|+-+...-.-+..|+.|+++|.+.++...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3333455556678899999964 333345443222223466899999999988876653
No 226
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.95 E-value=0.0027 Score=55.22 Aligned_cols=79 Identities=14% Similarity=0.171 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
.+-+|+|.|.+|+||||+|+.++..+ ....-.+ ++...-+. ..-..................+.+-+.+.|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~~~~--I~~D~YYk-~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVV--ISLDDYYK-DQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCcceE--eecccccc-chhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 34689999999999999999999988 2222111 11111010 001111111222222233455667778888888
Q ss_pred hcCCc
Q 042645 248 MRNRK 252 (427)
Q Consensus 248 L~~k~ 252 (427)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88877
No 227
>PRK10867 signal recognition particle protein; Provisional
Probab=96.94 E-value=0.0041 Score=60.62 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|++|+||||++..++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999988887766
No 228
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.94 E-value=0.0053 Score=52.60 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998765
No 229
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0016 Score=53.21 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=35.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 229 (427)
+|.|-|++|+||||+|+.+++++. -.+ .+...+++++++..+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g---l~~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG---LKL-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC---Cce-----------eeccHHHHHHHHHcCCCH
Confidence 689999999999999999999871 111 134578999999988764
No 230
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.92 E-value=0.0035 Score=52.75 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=62.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEE---EeCCCCCHHHHHHHHHHHhCCC--CC--CCCCCCHH---
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWE---VVSRDLQLGKIQESIAKKIGLY--NE--SWDNKSFD--- 238 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv---~~~~~~~~~~l~~~i~~~l~~~--~~--~~~~~~~~--- 238 (427)
...|-|++..|.||||.|..++-+.. .+-..++.+ .-.........+..+ .+... .. .+...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~---~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL---GHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 35788899999999999988877662 222233333 323233444444432 11100 00 01111111
Q ss_pred ----HHHHHHHHHhcCCc-EEEEEeccCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 042645 239 ----EKAQEIFKTMRNRK-IVLLLDDIWEL-----FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 239 ----~~~~~l~~~L~~k~-~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
+..+..++.+...+ =|||||++-.. -+.+++...+.....+..||+|-|+.+
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 12233344444444 49999998532 223444445555556778999999863
No 231
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.92 E-value=0.0046 Score=60.23 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.++.++|++|+||||++..++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999998888775
No 232
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.92 E-value=0.007 Score=52.67 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=45.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCc---EEEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCCCHHHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFD---FVIWEVVSRDLQLGKIQESIAKKI--GLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~~~~~~~~~l~~~i~~~l--~~~~~~~~~~~~~~~~~~l~ 245 (427)
+|+|.|++|+||||+|+.+...+.. .... ....++............. .... ..........+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999998832 1222 2333333322222222221 1111 11111224556677777787
Q ss_pred HHhcCCcEEE
Q 042645 246 KTMRNRKIVL 255 (427)
Q Consensus 246 ~~L~~k~~Ll 255 (427)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7767776544
No 233
>PHA00729 NTP-binding motif containing protein
Probab=96.91 E-value=0.0012 Score=58.00 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.1
Q ss_pred HHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 159 RVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 159 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45556666666789999999999999999998875
No 234
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.91 E-value=0.0016 Score=63.64 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=39.0
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++||++.++.+...+..++ .|.|.|++|+|||+||+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 468999999999999887764 48999999999999999999876
No 235
>PTZ00494 tuzin-like protein; Provisional
Probab=96.90 E-value=0.081 Score=50.92 Aligned_cols=165 Identities=15% Similarity=0.069 Sum_probs=97.8
Q ss_pred CCCCccccchhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 145 PLPPTVVGMQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 145 ~~~~~~vGR~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
..++.+|.|+.+-..+.+.|.+ .+++++.+.|.-|.||++|.+...... . -..++|.+... ++-++++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE-~-----~paV~VDVRg~---EDtLrsV 438 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE-G-----VALVHVDVGGT---EDTLRSV 438 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc-C-----CCeEEEEecCC---cchHHHH
Confidence 3456789998887766666654 478999999999999999999887765 1 13467777654 3457888
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHH---HhcCCcEEEEEeccCCccccccc---ccCCCCCCCCcEEEEecCChhHHhhc
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFK---TMRNRKIVLLLDDIWELFDLAQV---GLPVPSRASASKVVFTTREFEVCGLM 295 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~---~L~~k~~LlVlDdv~~~~~~~~~---~~~l~~~~~gs~IivTtR~~~v~~~~ 295 (427)
.+.++.+.-+..+.-.+-+.+.... ...++.=+||+-==+ -.++..+ ...|.....-|.|++----+.+....
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLRE-GssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLRE-GSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEecc-CCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 9999887543333333333333332 234555566653211 1111111 01122233446666643333221110
Q ss_pred ---CCCcceeccCCChHHHHHHHHHHh
Q 042645 296 ---DAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 296 ---~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
.--..|.+++++.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 111457899999999999888765
No 236
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.89 E-value=0.014 Score=55.26 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...+.-|+|++|+|||+|+.+++-.... ..+.-..++|++....+++..+.. +++.++..... ....+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 4578889999999999999988643311 112235789999998888887654 56666654321 012344
Q ss_pred HHHHHH---HHHHhc-CCcEEEEEeccC
Q 042645 238 DEKAQE---IFKTMR-NRKIVLLLDDIW 261 (427)
Q Consensus 238 ~~~~~~---l~~~L~-~k~~LlVlDdv~ 261 (427)
++.... +...+. .+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 443333 222332 345589999974
No 237
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0043 Score=59.15 Aligned_cols=88 Identities=20% Similarity=0.216 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+++++|+.|+||||++.++...... ......+..++... .....+-+....+.++.+... ..+..++...+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~-~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l-~~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM-RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLAL-AE 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHH-HH
Confidence 468999999999999999999887521 11123455555332 234455666666777665421 12222333333 33
Q ss_pred hcCCcEEEEEeccC
Q 042645 248 MRNRKIVLLLDDIW 261 (427)
Q Consensus 248 L~~k~~LlVlDdv~ 261 (427)
+.++ =++++|..-
T Consensus 213 l~~~-DlVLIDTaG 225 (374)
T PRK14722 213 LRNK-HMVLIDTIG 225 (374)
T ss_pred hcCC-CEEEEcCCC
Confidence 4444 456689874
No 238
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.88 E-value=0.0098 Score=56.25 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=58.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-------DNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-------~~~~~ 237 (427)
...++-|+|.+|+|||+|+..++-.... ....-..++|++....+.+..+ .++++.++...... ...+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCH
Confidence 4678889999999999999888754311 1112237899999988888776 45666666543110 12334
Q ss_pred HHHHHHHH---HHh-cCCcEEEEEeccCC
Q 042645 238 DEKAQEIF---KTM-RNRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~~~~~l~---~~L-~~k~~LlVlDdv~~ 262 (427)
+.....+. ..+ ..+.-|||+|.+-.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~a 229 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATA 229 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHH
Confidence 44433332 223 34566899998743
No 239
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.012 Score=59.81 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=60.9
Q ss_pred CccccchhhHHHHHHHhcc----------C--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE----------E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~----------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.++=|-++.+.+|.+.+.- + +..-|.+||++|.|||-||+.|+-.+ . .-|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc---s-----L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC---S-----LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---e-----eeEEeecCH----
Confidence 3456788888888887642 1 35578999999999999999998877 1 234444432
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL 263 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 263 (427)
+++... -+.+++...+.+.+.-.-++|+|.||++++.
T Consensus 740 ELLNMY-----------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMY-----------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHH-----------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222211 1223344444444444569999999999864
No 240
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.88 E-value=0.0063 Score=51.87 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC--CC---CCc--EEEEEEeCCCCCHHHHHHHHHHHhCCCCC----CCCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT--PN---DFD--FVIWEVVSRDLQLGKIQESIAKKIGLYNE----SWDNKS 236 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----~~~~~~ 236 (427)
...+++|.|+.|+|||||.+.+..+...+ .. .+. .+.|+ .+ .+.+..+++... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 44689999999999999999886321110 00 110 12222 11 355666665321 111222
Q ss_pred HHHH-HHHHHHHhcCC--cEEEEEeccCCccc---ccccccCCCC-CCCCcEEEEecCChhHHhhcCCCcceec
Q 042645 237 FDEK-AQEIFKTMRNR--KIVLLLDDIWELFD---LAQVGLPVPS-RASASKVVFTTREFEVCGLMDAHKSFKV 303 (427)
Q Consensus 237 ~~~~-~~~l~~~L~~k--~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~~~~~~~~~l 303 (427)
..+. .-.+...+-.+ +-+++||+.-+.-+ ...+...+.. ...|..||++|.+...... ....+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 2222 22233444456 77889999754322 2222222221 1246678888888766532 3444444
No 241
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.019 Score=57.87 Aligned_cols=152 Identities=17% Similarity=0.166 Sum_probs=83.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
..-|.++|++|+|||.||..++.... .-++++-.+ +++... +| .+++.....+.+.-
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP----ElL~Ky---IG--------aSEq~vR~lF~rA~ 757 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP----ELLSKY---IG--------ASEQNVRDLFERAQ 757 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH----HHHHHH---hc--------ccHHHHHHHHHHhh
Confidence 34688999999999999999987761 224555432 233222 22 12233333333344
Q ss_pred cCCcEEEEEeccCCccc-------------ccccccCCC--CCCCCcEEEE-ecCChhHH-hhcCC---CcceeccCCCh
Q 042645 249 RNRKIVLLLDDIWELFD-------------LAQVGLPVP--SRASASKVVF-TTREFEVC-GLMDA---HKSFKVECLGY 308 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~gs~Iiv-TtR~~~v~-~~~~~---~~~~~l~~L~~ 308 (427)
.-++|+|.+|++++..- ..++...+. .+-.|--|+- |||..-+- ..+.+ .+.+.-+.-++
T Consensus 758 ~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 758 SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 46999999999986411 222322222 1223444544 55543221 11222 23344455566
Q ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH
Q 042645 309 EDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA 347 (427)
Q Consensus 309 ~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 347 (427)
.+-.++|+............+ .+.++.+.+|..-|
T Consensus 838 ~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 777788877664322122222 67788888887654
No 242
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.88 E-value=0.006 Score=55.40 Aligned_cols=93 Identities=18% Similarity=0.322 Sum_probs=55.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|.+|+|||||+..+++.... .+-+.++++.+++.. ...++...+...-..... .....+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4567999999999999999999988721 222455666676554 455666666543211100 001111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccCC
Q 042645 240 ---KAQEIFKTM---RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ---~~~~l~~~L---~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++.+||++||+-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 111233444 38999999999843
No 243
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.87 E-value=0.0089 Score=56.22 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
...++-|+|++|+|||+++.+++-..... ...-..++|++....+++..+. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 46788999999999999999997665211 1112378999988888877654 44555543
No 244
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.87 E-value=0.0055 Score=56.61 Aligned_cols=87 Identities=23% Similarity=0.303 Sum_probs=47.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
.++++|+|++|+||||++..++..+. ....-..+..++.... ....+.+......++.+.. ...+...+...+..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~~- 269 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALDR- 269 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHHH-
Confidence 46899999999999999999987762 1111134555554331 1223333344444554332 22344444444433
Q ss_pred hcCCcEEEEEecc
Q 042645 248 MRNRKIVLLLDDI 260 (427)
Q Consensus 248 L~~k~~LlVlDdv 260 (427)
+.+ .=+|++|..
T Consensus 270 ~~~-~d~vliDt~ 281 (282)
T TIGR03499 270 LRD-KDLILIDTA 281 (282)
T ss_pred ccC-CCEEEEeCC
Confidence 333 347777753
No 245
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.86 E-value=0.025 Score=59.29 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|+...+..+.+.+.. .....|.|+|..|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 3589999888888776653 334568999999999999999998765
No 246
>PRK04328 hypothetical protein; Provisional
Probab=96.86 E-value=0.0047 Score=55.99 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=53.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---------------- 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---------------- 231 (427)
...++.|.|.+|+|||+|+.++..... ..-..++|++.... +.++.+ .+++++.....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEeccccc
Confidence 467899999999999999999766541 22456778877653 344333 33444331100
Q ss_pred ------------CCCCCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 042645 232 ------------WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIW 261 (427)
Q Consensus 232 ------------~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~ 261 (427)
....+.+.....+.+.++. +.-++|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0112345555666665543 45589999984
No 247
>PRK06547 hypothetical protein; Provisional
Probab=96.85 E-value=0.0017 Score=55.12 Aligned_cols=34 Identities=26% Similarity=0.193 Sum_probs=28.0
Q ss_pred HHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 160 VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 160 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444555677899999999999999999998875
No 248
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.023 Score=51.42 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=60.9
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
+++.|-+..++.|.+++.- ...+-|.++|++|.||+.||+.|+-.. .. -|.++|.+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nS-----TFFSvSSS---- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NS-----TFFSVSSS---- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CC-----ceEEeehH----
Confidence 4567888888888887642 146789999999999999999998775 12 22334332
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEeccCCc
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~ 263 (427)
++.. +.++ .-+.++..|.+.-+ .|+-+|.+|+++..
T Consensus 201 DLvS---KWmG---------ESEkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 201 DLVS---KWMG---------ESEKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred HHHH---HHhc---------cHHHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 1111 1111 11455556665543 69999999999753
No 249
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0012 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.473 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|.|++|+||||+++.+.+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999888
No 250
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.82 E-value=0.0015 Score=56.33 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.|+|++|+||||+|+.+++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 251
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.81 E-value=0.0031 Score=51.53 Aligned_cols=42 Identities=31% Similarity=0.239 Sum_probs=32.0
Q ss_pred EEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHH
Q 042645 172 VGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQE 219 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 219 (427)
|.|+|++|+|||+||+.+++.. . ....-+.++...+..+++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999887 1 2344567777777777664
No 252
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.79 E-value=0.00038 Score=58.99 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=44.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHHhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWD-NKSFDEKAQEIFKTMR 249 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~~~l~~~L~ 249 (427)
++.|.|.+|+||||+|..+..... . .++++.-.... ..+....|..........+. ...+..+...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~---~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG---L---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC---C---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 689999999999999999987651 1 12344333332 33455555443322222221 1112234444444333
Q ss_pred CCcEEEEEeccC
Q 042645 250 NRKIVLLLDDIW 261 (427)
Q Consensus 250 ~k~~LlVlDdv~ 261 (427)
+ .-++++|.+.
T Consensus 76 ~-~~~VlID~Lt 86 (170)
T PRK05800 76 P-GRCVLVDCLT 86 (170)
T ss_pred C-CCEEEehhHH
Confidence 2 3378899873
No 253
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.79 E-value=0.0012 Score=60.59 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=34.9
Q ss_pred HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 158 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 158 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
..+++.+...+ +-+.++|+.|+|||++++....... ...+ ...-++.+...+...+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~--~~~~-~~~~~~~s~~Tts~~~ 78 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLD--SDKY-LVITINFSAQTTSNQL 78 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCST--TCCE-EEEEEES-TTHHHHHH
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCC--cccc-ceeEeeccCCCCHHHH
Confidence 44555555544 4578999999999999999887662 1221 2344556655444433
No 254
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.016 Score=54.37 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=33.3
Q ss_pred cccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|-++.++-|.+++.- ...+-|.++|++|.|||-||+.|+...
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 45666666666555432 245679999999999999999999887
No 255
>PRK14527 adenylate kinase; Provisional
Probab=96.79 E-value=0.0022 Score=55.70 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|+|++|+||||+|+.+++.+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 256
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0083 Score=51.01 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|.|||||.+.++.-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 257
>PTZ00035 Rad51 protein; Provisional
Probab=96.78 E-value=0.019 Score=54.38 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC---CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH---TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...++.|+|.+|+|||+|+..++-.... ....-..++|+.....+++.. +..+++.++..... ....+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCH
Confidence 4678999999999999999988754411 111234667888877777766 34455665543210 012333
Q ss_pred HHHHHHHH---HHhc-CCcEEEEEeccCC
Q 042645 238 DEKAQEIF---KTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~~~~~l~---~~L~-~k~~LlVlDdv~~ 262 (427)
++....+. ..+. .+.-|||+|.+-.
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 44443332 2332 4556999999853
No 258
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.78 E-value=0.0011 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|+|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 259
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.78 E-value=0.014 Score=53.32 Aligned_cols=126 Identities=17% Similarity=0.050 Sum_probs=67.4
Q ss_pred hHHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCCCCCHHHHHHHHHHHhCC-CCC
Q 042645 156 TLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV---VSRDLQLGKIQESIAKKIGL-YNE 230 (427)
Q Consensus 156 ~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~l~~~i~~~l~~-~~~ 230 (427)
..+.++..+.+ +....++|.|+.|+|||||.+.+..... .....+++. +...... .++...... +..
T Consensus 97 ~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~ 168 (270)
T TIGR02858 97 AADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVDER----SEIAGCVNGVPQH 168 (270)
T ss_pred cHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecchhH----HHHHHHhcccccc
Confidence 34444444443 4457899999999999999999998762 112222221 1111111 233322221 111
Q ss_pred CC----CCCCHHHHHHHHHHHhc-CCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHH
Q 042645 231 SW----DNKSFDEKAQEIFKTMR-NRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVC 292 (427)
Q Consensus 231 ~~----~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~ 292 (427)
.. +..+.......+...+. ..+=++++|++-....+..+...+ ..|..+|+||.+..+.
T Consensus 169 ~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 169 DVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred cccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 00 01111111222333333 578899999987665555554443 2467899999876553
No 260
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.78 E-value=0.012 Score=55.47 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=56.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-------DNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-------~~~~~ 237 (427)
...++-|+|++|+|||+++.+++-..... ...-..++|++....+++..+.+ +++.++...... ...+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~~ 179 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYNS 179 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCCH
Confidence 46789999999999999999998654211 11124789999988888776654 445554322110 01111
Q ss_pred H---HHHHHHHHHhcC--CcEEEEEeccCC
Q 042645 238 D---EKAQEIFKTMRN--RKIVLLLDDIWE 262 (427)
Q Consensus 238 ~---~~~~~l~~~L~~--k~~LlVlDdv~~ 262 (427)
+ .....+...+.. +.-|||+|.+-.
T Consensus 180 ~~~~~~~~~l~~~i~~~~~~~lvVIDSisa 209 (317)
T PRK04301 180 DHQMLLAEKAEELIKEGENIKLVIVDSLTA 209 (317)
T ss_pred HHHHHHHHHHHHHHhccCceeEEEEECchH
Confidence 1 233444455543 344899998743
No 261
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.77 E-value=0.011 Score=52.89 Aligned_cols=89 Identities=22% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE----------------- 230 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------------- 230 (427)
....+.|.|.+|+|||||+.++...... .-..++|++... +..++... +++++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~--~~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEE--SRESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 4578999999999999999987755421 234678887643 33444333 333332110
Q ss_pred -----CCCCCCHHHHHHHHHHHhcC---CcEEEEEeccCC
Q 042645 231 -----SWDNKSFDEKAQEIFKTMRN---RKIVLLLDDIWE 262 (427)
Q Consensus 231 -----~~~~~~~~~~~~~l~~~L~~---k~~LlVlDdv~~ 262 (427)
.....+.+++...+.+.++. +.-++|+|.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~ 132 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSA 132 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchh
Confidence 00123455666666655543 345788888753
No 262
>PRK07667 uridine kinase; Provisional
Probab=96.76 E-value=0.002 Score=56.03 Aligned_cols=37 Identities=22% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.+.+.. +...+|+|.|.+|+||||+|..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666643 345799999999999999999999877
No 263
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.75 E-value=0.0049 Score=53.13 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=31.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
++.|.|++|+|||+|+.++..... ..-..++|++... +..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 367999999999999999877652 2234567777654 34555444
No 264
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.75 E-value=0.01 Score=50.26 Aligned_cols=115 Identities=14% Similarity=0.212 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCC--C---cEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCCCCCCHHH-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPND--F---DFVIWEVVSRDLQ--LGKIQESIAKKIGLYNESWDNKSFDE- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~~~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~- 239 (427)
...+++|.|+.|.|||||++.+........+. + ..+.+ +.+... ...+...+... .. ...+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~---~~LS~G~~ 97 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WD---DVLSGGEQ 97 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CC---CCCCHHHH
Confidence 44689999999999999999998765211111 1 11222 222221 11233333210 11 1222222
Q ss_pred HHHHHHHHhcCCcEEEEEeccCCccc---ccccccCCCCCCCCcEEEEecCChhHH
Q 042645 240 KAQEIFKTMRNRKIVLLLDDIWELFD---LAQVGLPVPSRASASKVVFTTREFEVC 292 (427)
Q Consensus 240 ~~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~gs~IivTtR~~~v~ 292 (427)
..-.+...+-.++=+++||+.-+.-+ ...+...+... +..||++|.+....
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 22233444556778889998754322 12222222211 35688888876654
No 265
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.74 E-value=0.012 Score=52.57 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+++|.|+.|+|||||++.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999877
No 266
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.74 E-value=0.0039 Score=50.26 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=43.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
.+-|.|.|.||+|||||+..++... . .-|+++++-..-.+++...-+... ....+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~vkEn~l~~gyDE~y~-----c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDLVKENNLYEGYDEEYK-----CHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhHHhhhcchhccccccc-----CccccHHHHHHHHHHHH
Confidence 4569999999999999999998654 1 235666543333333222211111 13456677777777766
Q ss_pred cCCcE
Q 042645 249 RNRKI 253 (427)
Q Consensus 249 ~~k~~ 253 (427)
.+..+
T Consensus 74 ~~Gg~ 78 (176)
T KOG3347|consen 74 IEGGN 78 (176)
T ss_pred hcCCc
Confidence 55433
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.73 E-value=0.0051 Score=60.61 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++... ++.++...... ...+.+.+.+.+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 456899999999999999999988762 22346778776543 3343322 45555432211 122334443333
Q ss_pred HHHhcCCcEEEEEeccCC
Q 042645 245 FKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~~k~~LlVlDdv~~ 262 (427)
. +.+.-++|+|.+..
T Consensus 153 ~---~~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 E---EEKPDLVVIDSIQT 167 (446)
T ss_pred H---hhCCCEEEEechhh
Confidence 2 24667999999853
No 268
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.061 Score=47.42 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=90.0
Q ss_pred ccc-chhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 150 VVG-MQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 150 ~vG-R~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++| -+..+.+|.+.+.- .+++-+.++|++|.|||-||+.++++- ...|+.+|.+
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgs---- 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS---- 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----
Confidence 455 45566666555431 246678999999999999999998875 2345666543
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCcccc----------------cccccCCC--CC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFDL----------------AQVGLPVP--SR 276 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~~----------------~~~~~~l~--~~ 276 (427)
++.+..+ + . .......+.-.- ..-+.+|.+|++++...- -++...+. ..
T Consensus 216 elvqk~i---g-e--------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 ELVQKYI---G-E--------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHHh---h-h--------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 2222221 1 0 012223332222 346789999998764210 11111121 12
Q ss_pred CCCcEEEEecCChhHHh--hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Q 042645 277 ASASKVVFTTREFEVCG--LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVA 338 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~ 338 (427)
....+||..|..-++.. .+. ....|+.++-+++.-.++++-+...-+....-++..+++++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 34568888776555422 122 235678888888877788776554333222234444444443
No 269
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.71 E-value=0.0015 Score=53.67 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 58899999999999999998776
No 270
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.70 E-value=0.011 Score=52.83 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
...++.|.|++|+|||||+.+++..... .+ ..+++++.. .+..++++.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g--~~~~yi~~e--~~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG--YSVSYVSTQ--LTTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC--CcEEEEeCC--CCHHHHHHHH-HHhC
Confidence 3468999999999999998776655421 11 345666633 3556666666 3444
No 271
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.023 Score=52.92 Aligned_cols=145 Identities=20% Similarity=0.299 Sum_probs=76.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
..+-|.++|++|.|||-||+.++.+. ...|-.+ .++.-.+ . .++ ..+.+...+...
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv---~~s~lt~--K-------Wfg---------E~eKlv~AvFsl 181 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINV---SVSNLTS--K-------WFG---------EAQKLVKAVFSL 181 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCccee---eccccch--h-------hHH---------HHHHHHHHHHhh
Confidence 45679999999999999999999887 4444332 2222111 0 000 001122222221
Q ss_pred h-cCCcEEEEEeccCCcc--------------------cccccccCCCCCCCCcEEEE---ecCChhHHhh--cCCCcce
Q 042645 248 M-RNRKIVLLLDDIWELF--------------------DLAQVGLPVPSRASASKVVF---TTREFEVCGL--MDAHKSF 301 (427)
Q Consensus 248 L-~~k~~LlVlDdv~~~~--------------------~~~~~~~~l~~~~~gs~Iiv---TtR~~~v~~~--~~~~~~~ 301 (427)
- +=++.+|.+|.+++.- .|+.+. .+.+.+||| |-|..++-.. -.-.+.+
T Consensus 182 AsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~-----s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf 256 (386)
T KOG0737|consen 182 ASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLS-----SKDSERVLVLGATNRPFDLDEAIIRRLPRRF 256 (386)
T ss_pred hhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhcccc-----CCCCceEEEEeCCCCCccHHHHHHHhCccee
Confidence 1 2368889999886531 133331 233456776 5555444211 1122345
Q ss_pred eccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 302 KVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 302 ~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
.++--+.++-.++++-.......+.+-+ ..+|++.|.|.-
T Consensus 257 ~V~lP~~~qR~kILkviLk~e~~e~~vD----~~~iA~~t~GyS 296 (386)
T KOG0737|consen 257 HVGLPDAEQRRKILKVILKKEKLEDDVD----LDEIAQMTEGYS 296 (386)
T ss_pred eeCCCchhhHHHHHHHHhcccccCcccC----HHHHHHhcCCCc
Confidence 5554445555556655554443333333 567778888865
No 272
>PRK08233 hypothetical protein; Provisional
Probab=96.70 E-value=0.0015 Score=56.10 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|.+|+||||||..+...+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999877
No 273
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.68 E-value=0.0067 Score=52.63 Aligned_cols=91 Identities=16% Similarity=0.223 Sum_probs=47.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCC-------CCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPN-------DFDFVIWEVVSRDLQLGKIQESIAKKIGLYN------------- 229 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~------------- 229 (427)
.++.|.|++|+||||++..+......... .-..++|++.... ...+.+.+........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeecccc
Confidence 57999999999999999998887743221 2236778776654 3333333332221100
Q ss_pred -------CCCCCCCHHHHHHHHHHHhcC--CcEEEEEeccCC
Q 042645 230 -------ESWDNKSFDEKAQEIFKTMRN--RKIVLLLDDIWE 262 (427)
Q Consensus 230 -------~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~ 262 (427)
............+.+.+.+.. +.-++|+|.+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 000111124455566666654 456999998753
No 274
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.0092 Score=56.81 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=49.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
..++|+|+|++|+||||++..++..+. ..-..+..++.... ....+-+......++.+.. ...++..+...+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~---~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHHH
Confidence 347999999999999999999988762 11223444544321 1122233344444444321 13355555555544
Q ss_pred HhcC-CcEEEEEeccC
Q 042645 247 TMRN-RKIVLLLDDIW 261 (427)
Q Consensus 247 ~L~~-k~~LlVlDdv~ 261 (427)
.-.. +.=+|++|-.-
T Consensus 315 lk~~~~~DvVLIDTaG 330 (436)
T PRK11889 315 FKEEARVDYILIDTAG 330 (436)
T ss_pred HHhccCCCEEEEeCcc
Confidence 3322 23467778764
No 275
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.68 E-value=0.0038 Score=59.80 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHhccC--------------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEE--------------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.++.++.+.-++... ..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 56889998888887666431 23679999999999999999999887
No 276
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.67 E-value=0.0024 Score=57.76 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=48.3
Q ss_pred HHHHHHHhc--cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 157 LDRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 157 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
-.+|+..+. .++..+|+|.|.||+|||||...+...+ ...++--.++=|.-|.+++-..++-+=.+
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 345666654 3577899999999999999999998888 44555556666666777776666655443
No 277
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.67 E-value=0.0042 Score=60.30 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCccccchhhHHHHHHHhcc-------C---------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE-------E---------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~-------~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..++.+..++.. . ..+.+.++|++|+|||+||+.++...
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999998888666521 0 23569999999999999999998776
No 278
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.67 E-value=0.0034 Score=53.66 Aligned_cols=119 Identities=16% Similarity=0.131 Sum_probs=64.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC---CCCHHHHHHHHH--H--HhCCCCCCCCCCCHHH-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR---DLQLGKIQESIA--K--KIGLYNESWDNKSFDE- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~l~~~i~--~--~l~~~~~~~~~~~~~~- 239 (427)
....|.|+|..|-||||.|.-+.-+.. .+-..+..+.+-+ .......+..+- . +.+... .+...+.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHH
Confidence 346899999999999999988877652 2223344444322 334444443321 0 001100 011111111
Q ss_pred ------HHHHHHHHhcC-CcEEEEEeccCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 042645 240 ------KAQEIFKTMRN-RKIVLLLDDIWEL-----FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 240 ------~~~~l~~~L~~-k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
..+..++.+.. +-=|||||++-.. -+.+++...+.....+..||+|-|+.+
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22333444544 4459999998543 233445455555556778999999854
No 279
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.66 E-value=0.0081 Score=55.00 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred HHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCC
Q 042645 160 VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE-----SWDN 234 (427)
Q Consensus 160 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~-----~~~~ 234 (427)
...++.+.+..++.|.|.+|+|||||+..+.+.+ .......+ + .....+..+ ...+...+.+.- ....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l---~~~~~~~V-I-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Ch 167 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL---KDSVPCAV-I-EGDQQTVND--AARIRATGTPAIQVNTGKGCH 167 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh---ccCCCEEE-E-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCc
Confidence 3344445678899999999999999999999887 22222222 2 222222222 222344333211 0112
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 042645 235 KSFDEKAQEIFKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 235 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 262 (427)
.+...+...+..+.....-+||++++-+
T Consensus 168 l~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 168 LDAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred CcHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 2333344444444334446788999865
No 280
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.65 E-value=0.0079 Score=58.32 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|++|+||||++..++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998766
No 281
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.65 E-value=0.013 Score=53.75 Aligned_cols=90 Identities=20% Similarity=0.197 Sum_probs=49.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH--HHHHHHHHHHhCCCCC-CCCCCCHHHH-HHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL--GKIQESIAKKIGLYNE-SWDNKSFDEK-AQE 243 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~--~~l~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 243 (427)
+.+++.++|++|+||||++..++..+. ..-..+..+.... +.. .+-+....+..+.+.. .....++... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 457899999999999999999988772 2223555565442 222 2333344455553311 0112233332 233
Q ss_pred HHHHhcCCcEEEEEeccC
Q 042645 244 IFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 244 l~~~L~~k~~LlVlDdv~ 261 (427)
+.....+..=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 433333444578888764
No 282
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.64 E-value=0.014 Score=53.87 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=42.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCC--CCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLY--NESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~~~~~l~ 245 (427)
...+|+|.|+.|+||||+|+.+..-....... ..+..++...-......+. ..+.. ..-....+.+.+...+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~-g~V~vi~~D~f~~~~~~l~----~~g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEH-RKVELITTDGFLHPNQVLK----ERNLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCC-CceEEEecccccccHHHHH----HcCCccccCCChhccHHHHHHHHH
Confidence 45799999999999999998776554111111 1233344333222222222 22211 11124456666766666
Q ss_pred HHhcCC
Q 042645 246 KTMRNR 251 (427)
Q Consensus 246 ~~L~~k 251 (427)
....++
T Consensus 136 ~Lk~g~ 141 (290)
T TIGR00554 136 DLKSGK 141 (290)
T ss_pred HHHCCC
Confidence 665554
No 283
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.62 E-value=0.023 Score=57.00 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=71.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCC-----CCcEEEEEEeCC-C--------------C-C-HHHHHHHHHHHh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN-----DFDFVIWEVVSR-D--------------L-Q-LGKIQESIAKKI 225 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~~~-~--------------~-~-~~~l~~~i~~~l 225 (427)
....|+|+|+.|+|||||.+.+........+ .--.+.|+.-.. . + + ...-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 4457999999999999999999665521111 111122222111 0 0 0 134444455555
Q ss_pred CCCCCCC----CCCCHHHHHH-HHHHHhcCCcEEEEEeccCCccccc---ccccCCCCCCCCcEEEEecCChhHHhhcCC
Q 042645 226 GLYNESW----DNKSFDEKAQ-EIFKTMRNRKIVLLLDDIWELFDLA---QVGLPVPSRASASKVVFTTREFEVCGLMDA 297 (427)
Q Consensus 226 ~~~~~~~----~~~~~~~~~~-~l~~~L~~k~~LlVlDdv~~~~~~~---~~~~~l~~~~~gs~IivTtR~~~v~~~~~~ 297 (427)
+...+.. ...+..+..+ .+...+-.++-+||||+--|.-+.+ .+...+.. -.| .||+.|.+..+.....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHhhc-
Confidence 5443211 1223333333 3344556789999999876643322 22223322 123 4888999988776543
Q ss_pred CcceeccC
Q 042645 298 HKSFKVEC 305 (427)
Q Consensus 298 ~~~~~l~~ 305 (427)
...+.+.+
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
Confidence 34455543
No 284
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.62 E-value=0.0017 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 285
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.61 E-value=0.0021 Score=50.88 Aligned_cols=40 Identities=38% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 172 VGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
|.|+|.+|+||||+|+.++... ...|.. |.+..+..+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE---EEecCCCCcccc
Confidence 6899999999999999999887 455643 333444444443
No 286
>PRK05973 replicative DNA helicase; Provisional
Probab=96.61 E-value=0.016 Score=51.73 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------CCCCHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---------DNKSFD 238 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---------~~~~~~ 238 (427)
...++.|.|.+|+|||+++.++..... ..-..+++++.... ..++...+. +++...... .....+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSlEes--~~~i~~R~~-s~g~d~~~~~~~~~~d~~d~~~~~ 136 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTLEYT--EQDVRDRLR-ALGADRAQFADLFEFDTSDAICAD 136 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEEeCC--HHHHHHHHH-HcCCChHHhccceEeecCCCCCHH
Confidence 446899999999999999999876652 22345667766543 455555543 233321110 112233
Q ss_pred HHHHHHHHHhcCCcEEEEEeccC
Q 042645 239 EKAQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 239 ~~~~~l~~~L~~k~~LlVlDdv~ 261 (427)
..+..+.. ..+.-++|+|-+.
T Consensus 137 ~ii~~l~~--~~~~~lVVIDsLq 157 (237)
T PRK05973 137 YIIARLAS--APRGTLVVIDYLQ 157 (237)
T ss_pred HHHHHHHH--hhCCCEEEEEcHH
Confidence 33333333 1234588899875
No 287
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.61 E-value=0.012 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|++|+||||||+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999877
No 288
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.61 E-value=0.07 Score=53.85 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=39.2
Q ss_pred CCccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|+...++++.+.+.. .....|.|+|..|+|||++|+.+.+..
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35789999999888888754 344568999999999999999998765
No 289
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.60 E-value=0.0098 Score=51.05 Aligned_cols=120 Identities=19% Similarity=0.234 Sum_probs=62.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE---eCCCCCHHHHH------HHHHHHhCCCCC---CCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV---VSRDLQLGKIQ------ESIAKKIGLYNE---SWDNK 235 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~~~~~~~~~l~------~~i~~~l~~~~~---~~~~~ 235 (427)
...+++|.|+.|+|||||++.++.... .....+++. +. ..+..... .++++.+++... .....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 446899999999999999999987651 122233322 11 11222211 124455554321 11122
Q ss_pred CHHHH-HHHHHHHhcCCcEEEEEeccCCccc---ccccccCCCCC-CC-CcEEEEecCChhHH
Q 042645 236 SFDEK-AQEIFKTMRNRKIVLLLDDIWELFD---LAQVGLPVPSR-AS-ASKVVFTTREFEVC 292 (427)
Q Consensus 236 ~~~~~-~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~~-~~-gs~IivTtR~~~v~ 292 (427)
+..+. .-.+...+-..+-++++|+.-+.-+ ...+...+... .. +..||++|.+....
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22222 2234445566788999999754322 22222222211 12 56788888876653
No 290
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.004 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 291
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.59 E-value=0.012 Score=53.80 Aligned_cols=91 Identities=14% Similarity=0.097 Sum_probs=56.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHH---HHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDE---KAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~---~~~~l 244 (427)
..+++=|+|+.|+||||+|.+++-.. +..-..++|+..-..+++..+..-....+..-.- ....+.++ ++..+
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v-~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLV-SQPDTGEQQLEIAEKL 134 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeE-ecCCCHHHHHHHHHHH
Confidence 45788999999999999999987666 3334488999998888877654333221211000 02223333 33333
Q ss_pred HHHhcCCcEEEEEeccCC
Q 042645 245 FKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~~k~~LlVlDdv~~ 262 (427)
......+--|+|+|.+-.
T Consensus 135 ~~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 135 ARSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HHhccCCCCEEEEecCcc
Confidence 334334466999999853
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.012 Score=56.57 Aligned_cols=91 Identities=19% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP-NDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
..++|.++|+.|+||||.+..++..+.... ..-..+..++.... .....-+...++.++.+.. ...+.+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 346899999999999999999988762111 12234555555432 1222335556666665432 2334444444444
Q ss_pred HHhcCCcEEEEEeccCC
Q 042645 246 KTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv~~ 262 (427)
.. .+.-++++|....
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 33 3455888898753
No 293
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.57 E-value=0.0023 Score=67.21 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=59.2
Q ss_pred CCcEEEEEeccCCcccc---c----ccccCCCCCCCCcEEEEecCChhHHhhcCCCcceeccCCChHHHHHHHHHHhCCC
Q 042645 250 NRKIVLLLDDIWELFDL---A----QVGLPVPSRASASKVVFTTREFEVCGLMDAHKSFKVECLGYEDAWRLFEEKVGRD 322 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~~---~----~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~ 322 (427)
..+-|++||++-.-.+. . .+...+. ..|+.+|+||....+.........+....+..++-.--|..++...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~p~Ykl~~G 478 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLSPTYKLLKG 478 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCceEEEECCC
Confidence 47899999998654221 1 1222222 3478899999998775543222222111111111000011111111
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhh
Q 042645 323 ILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRS 373 (427)
Q Consensus 323 ~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~ 373 (427)
. +. ...+-.|++++ |+|-.+.--|..+.. ....+...+++.|..
T Consensus 479 ~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 479 I--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred C--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 1 11 12377777776 789888887777765 234456666666554
No 294
>PRK14974 cell division protein FtsY; Provisional
Probab=96.57 E-value=0.021 Score=53.81 Aligned_cols=91 Identities=19% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC--CHHHHHHHHHHHhCCCCCC-CCCCCHHHHH-HH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL--QLGKIQESIAKKIGLYNES-WDNKSFDEKA-QE 243 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~-~~ 243 (427)
+..+|.++|++|+||||++..++..+. . ..+ .++.+... .+ ...+-+...+..++.+... ....++.... ..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-K-NGF-SVVIAAGD-TFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H-cCC-eEEEecCC-cCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 457999999999999999999887762 2 223 33334322 22 2233455666777654321 1223333332 22
Q ss_pred HHHHhcCCcEEEEEeccCC
Q 042645 244 IFKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 244 l~~~L~~k~~LlVlDdv~~ 262 (427)
+........=++++|-...
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222223889998754
No 295
>PRK06762 hypothetical protein; Provisional
Probab=96.57 E-value=0.002 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|+|++|+||||+|+.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 296
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.57 E-value=0.01 Score=58.52 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=54.6
Q ss_pred HHHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---
Q 042645 158 DRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW--- 232 (427)
Q Consensus 158 ~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--- 232 (427)
..+-+.|..+ ...++.|.|.+|+|||||+.+++..... .-..++|++..+. ..++.. -+..++......
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~ 154 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVL 154 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEc
Confidence 3344444332 5578999999999999999999776622 1235778775443 333332 233444322110
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeccCC
Q 042645 233 DNKSFDEKAQEIFKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 233 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~ 262 (427)
...+.+.+...+. +.+.-++|+|.+..
T Consensus 155 ~e~~~~~I~~~i~---~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 155 SETNWEQICANIE---EENPQACVIDSIQT 181 (454)
T ss_pred CCCCHHHHHHHHH---hcCCcEEEEecchh
Confidence 1233344433332 23667899998854
No 297
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.57 E-value=0.015 Score=51.15 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCcEEEEEeccCCcc---cccccccCCCC--CCCCcEEEEecCChhHHhhcCCCcceec
Q 042645 241 AQEIFKTMRNRKIVLLLDDIWELF---DLAQVGLPVPS--RASASKVVFTTREFEVCGLMDAHKSFKV 303 (427)
Q Consensus 241 ~~~l~~~L~~k~~LlVlDdv~~~~---~~~~~~~~l~~--~~~gs~IivTtR~~~v~~~~~~~~~~~l 303 (427)
.-.+.+.|-..+-+|+.|+--..- .-..+...+.. ...|..||+.|.+..++..+ .+.|.+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~--dr~i~l 215 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIEL 215 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhC--CEEEEE
Confidence 334556667788899999853211 11122222221 23477899999999998854 344444
No 298
>PTZ00301 uridine kinase; Provisional
Probab=96.56 E-value=0.002 Score=56.54 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|.+|+||||||+.+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999988765
No 299
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.55 E-value=0.013 Score=54.65 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=54.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
..+++-|+|+.|+||||||..+..... ..-..++|+.....+++ ..+..++++.+.. .....++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhh---cccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 457999999999999999999887762 23457889988776554 3455566543321 133455666666
Q ss_pred HHHhcCC-cEEEEEeccCCc
Q 042645 245 FKTMRNR-KIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L~~k-~~LlVlDdv~~~ 263 (427)
...++.. --++|+|.|-..
T Consensus 124 e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT-
T ss_pred HHHhhcccccEEEEecCccc
Confidence 6666643 458999998653
No 300
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.54 E-value=0.0082 Score=62.34 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=58.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
..+++-|+|++|+|||||+.+++.... ..-..++|+.....+++ ..+++++++.... ...+.+.....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 467899999999999999988766542 22356788887776663 3667777653211 233445566666
Q ss_pred HHHhc-CCcEEEEEeccC
Q 042645 245 FKTMR-NRKIVLLLDDIW 261 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~ 261 (427)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 466799999975
No 301
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.52 E-value=0.0021 Score=57.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+|+.+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998876
No 302
>PRK05439 pantothenate kinase; Provisional
Probab=96.52 E-value=0.023 Score=52.90 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=44.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
+..-+|+|.|.+|+||||+|+.+...+. .......+.-++...-+.....+.. ..+..........+.+.+...|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~-~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS-RWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-hhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHHH
Confidence 3567999999999999999999887652 1111122333443332222222211 011000111234566777777776
Q ss_pred HhcCCc
Q 042645 247 TMRNRK 252 (427)
Q Consensus 247 ~L~~k~ 252 (427)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 666665
No 303
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.52 E-value=0.0022 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|+|.|++|+||||+++.+.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.016 Score=54.94 Aligned_cols=90 Identities=21% Similarity=0.115 Sum_probs=54.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
+.++++|+|+.|+||||++..++..+. .. -..+.+++.... ....+-+...++.++.+.. ...++.++...+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 457999999999999999999987662 22 234566665432 2234455556666655432 23455666554543
Q ss_pred Hhc-CCcEEEEEeccCC
Q 042645 247 TMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 247 ~L~-~k~~LlVlDdv~~ 262 (427)
.-. +..=+|++|-.-.
T Consensus 280 l~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 280 MTYVNCVDHILIDTVGR 296 (407)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 321 3345778887643
No 305
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.50 E-value=0.0025 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=23.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+|+|.|++|+|||||++.+...+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999876
No 306
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.50 E-value=0.0049 Score=49.61 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=29.7
Q ss_pred hhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 155 STLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 155 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++..++.+.|.. ....+|.+.|.-|+||||+++.+++.+
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344555555543 344689999999999999999999987
No 307
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.50 E-value=0.0097 Score=53.14 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=55.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------CCC-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE-------------SWD- 233 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~-------------~~~- 233 (427)
...++.|.|++|+|||+|+.++...... ..-..++|++...+ +.++.+.+. .++.+.. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 5679999999999999999987654311 11345778877543 344444433 3332110 001
Q ss_pred ----CCCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 234 ----NKSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 234 ----~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
..+.+.+...+.+.++. +...+|+|.+..
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 35677778888777664 568999999743
No 308
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.49 E-value=0.0089 Score=61.22 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=51.1
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.++.+..+...+..+. .+.++|++|+||||+++.+.+.+. ...|...+++ .....+...++..+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~-~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVY-PNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEE-eCCCCCchHHHHHHHHhhc
Confidence 567899998888887777653 566999999999999999998872 2233333322 2233345566666666554
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.49 E-value=0.0037 Score=55.67 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=38.0
Q ss_pred hHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHH
Q 042645 156 TLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQE 219 (427)
Q Consensus 156 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~ 219 (427)
...++++.+.. ++..+|+|.|+||+|||||...+...+ ...++--.++=|.-|.+++-..++-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~-~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL-RERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH-HHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH-hhcCCceEEEEECCCCCCCCCcccc
Confidence 44555665543 477899999999999999999998888 3334444455555565665544443
No 310
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.49 E-value=0.021 Score=52.14 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=30.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
...++.|.|++|+|||+++.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 467899999999999999999866542 2234677888764
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.48 E-value=0.018 Score=51.67 Aligned_cols=125 Identities=17% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCCC----CCCCHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-----DLQLGKIQESIAKKIGLYNESW----DNKSFD 238 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-----~~~~~~l~~~i~~~l~~~~~~~----~~~~~~ 238 (427)
...+++|+|..|+|||||++.+..-. ......+.| .-.+ .....+-..+++..+++..... ..-+..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f-~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILF-EGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEE-cCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 45689999999999999999998765 222222332 2111 1223345566677766543210 122223
Q ss_pred HHHH-HHHHHhcCCcEEEEEeccCCcccc---cccccCCCC--CCCCcEEEEecCChhHHhhcC
Q 042645 239 EKAQ-EIFKTMRNRKIVLLLDDIWELFDL---AQVGLPVPS--RASASKVVFTTREFEVCGLMD 296 (427)
Q Consensus 239 ~~~~-~l~~~L~~k~~LlVlDdv~~~~~~---~~~~~~l~~--~~~gs~IivTtR~~~v~~~~~ 296 (427)
+.++ .|...|.-++-++|.|+.-+..+. .++...+.+ ...|-..+..|.+-.+...+.
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3333 345567789999999997654332 222222211 123566788888877766654
No 312
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.47 E-value=0.0053 Score=62.78 Aligned_cols=74 Identities=12% Similarity=0.180 Sum_probs=56.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.++.++.|...+..+ +.+.++|++|+||||+|+.+.+.+. ..+++..+|..- ...+...+++.++..++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 56899999998888877665 4689999999999999999998762 344577777554 44467777777776554
No 313
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.016 Score=57.97 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----
Q 042645 158 DRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---- 231 (427)
Q Consensus 158 ~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---- 231 (427)
..|-+.|..+ ...++.|.|++|+|||||+.+++.... ..-..+++++..+ +..++...+ +.++.+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~ 323 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQ 323 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhC
Confidence 3444444442 567999999999999999999987762 2334567776554 455555554 455543211
Q ss_pred ---------CCCCCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 232 ---------WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 232 ---------~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
....+.++....+.+.+.. +.-++|+|.+..
T Consensus 324 g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 324 GLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred CcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1223446677777776654 566899999853
No 314
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.079 Score=46.82 Aligned_cols=44 Identities=27% Similarity=0.389 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+=|-+-.++++.+...- +..+-|.++|++|.|||.||+.++++-
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 44566666666665531 356789999999999999999999886
No 315
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.036 Score=55.69 Aligned_cols=173 Identities=17% Similarity=0.176 Sum_probs=89.2
Q ss_pred Cccccchhh---HHHHHHHhccCC---------CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQST---LDRVWRCLTEEP---------VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~---~~~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.++.|.++. +.++++.|.++. ++-|.++|++|.|||.||+.++... .+ ..| +.|.+
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~V-PFf------~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GV-PFF------SISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CC-Cce------eccch----
Confidence 456787765 555566666542 4568899999999999999999876 22 112 12211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc------------c----cccccCCCCCC--
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD------------L----AQVGLPVPSRA-- 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------------~----~~~~~~l~~~~-- 277 (427)
+..+.+ ...........+.+..+.-++++++|.++.... + .++........
T Consensus 218 ----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 011111 111222333444555566789999999875411 1 22211111112
Q ss_pred CCcEEEEecCChhHH--hhcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH
Q 042645 278 SASKVVFTTREFEVC--GLMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA 347 (427)
Q Consensus 278 ~gs~IivTtR~~~v~--~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 347 (427)
.|-.|+..|...+|. ..+. -...+.++..+-..-.++++-++........-++ ..|++.+-|.-.|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 233333333333332 1222 2345566666656666666655533332222232 3377777776554
No 316
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.45 E-value=0.0079 Score=54.97 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
+.|.|+|.||+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 5789999999999999999998873
No 317
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.43 E-value=0.002 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.700 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|+|++|+|||+||..++.++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999988776
No 318
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.42 E-value=0.0028 Score=55.80 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|++|+|||||++.+...+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 319
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.41 E-value=0.0086 Score=56.82 Aligned_cols=67 Identities=24% Similarity=0.205 Sum_probs=50.6
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..++|++..+..+..++..++ .+.+.|++|+|||+||+.++... . ....++.+.....+.++.....
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l---~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 24 KVVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL---G---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred CeeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh---C---CCeEEEecCCCCCHHHhcCchh
Confidence 347898888888877777654 38899999999999999999887 2 2345667777777776654443
No 320
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.41 E-value=0.022 Score=51.02 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCC----------CC---cEEEEEEe----CCCC--CH--------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPN----------DF---DFVIWEVV----SRDL--QL-------------- 214 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~----~~~~--~~-------------- 214 (427)
....++|+|+.|.|||||.+.+..-.....+ .. ..+.||.= ...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3468999999999999999999874421111 01 23445431 1111 11
Q ss_pred --------HHHHHHHHHHhCCCC---CCCCCCCHHHHHHH-HHHHhcCCcEEEEEeccCCc------ccccccccCCCCC
Q 042645 215 --------GKIQESIAKKIGLYN---ESWDNKSFDEKAQE-IFKTMRNRKIVLLLDDIWEL------FDLAQVGLPVPSR 276 (427)
Q Consensus 215 --------~~l~~~i~~~l~~~~---~~~~~~~~~~~~~~-l~~~L~~k~~LlVlDdv~~~------~~~~~~~~~l~~~ 276 (427)
.+...+.++.+++.. ......+-.+..+. |-+.|..++=||+||+--.- ...-++...+..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~- 187 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ- 187 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-
Confidence 134444555554432 12233344444443 44567888999999986432 112223233332
Q ss_pred CCCcEEEEecCChhHH
Q 042645 277 ASASKVVFTTREFEVC 292 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~ 292 (427)
.|+.||++|.+-+..
T Consensus 188 -eg~tIl~vtHDL~~v 202 (254)
T COG1121 188 -EGKTVLMVTHDLGLV 202 (254)
T ss_pred -CCCEEEEEeCCcHHh
Confidence 288899999986643
No 321
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.41 E-value=0.028 Score=53.50 Aligned_cols=101 Identities=24% Similarity=0.201 Sum_probs=56.1
Q ss_pred hHHHHHHHhccC----CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC
Q 042645 156 TLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNE 230 (427)
Q Consensus 156 ~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~ 230 (427)
....+..++.++ +.++|.++|+.|+||||...+++..+ .....-..+..++...- ....+-++..++-++++..
T Consensus 186 ~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 186 KLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 344444444443 47899999999999998776666665 21233445666665431 2334445556666666542
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEeccC
Q 042645 231 SWDNKSFDEKAQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~ 261 (427)
...++.++...+... ++. =+|.+|-+.
T Consensus 265 --vv~~~~el~~ai~~l-~~~-d~ILVDTaG 291 (407)
T COG1419 265 --VVYSPKELAEAIEAL-RDC-DVILVDTAG 291 (407)
T ss_pred --EecCHHHHHHHHHHh-hcC-CEEEEeCCC
Confidence 234445555444433 333 345556553
No 322
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.39 E-value=0.0076 Score=57.85 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCccccchhhHHHHHHHhcc---------C-----CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLTE---------E-----PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~---------~-----~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.+..++.+..++.. + ..+.|.++|++|+|||+||+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999988877743 0 14679999999999999999999887
No 323
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.39 E-value=0.0038 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|+|.+|+||||||+.+.+.+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999988
No 324
>PRK03839 putative kinase; Provisional
Probab=96.39 E-value=0.0027 Score=54.53 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 325
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.38 E-value=0.016 Score=47.76 Aligned_cols=26 Identities=42% Similarity=0.682 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|.|||||++.+....
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 44689999999999999999998765
No 326
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.37 E-value=0.014 Score=53.43 Aligned_cols=104 Identities=19% Similarity=0.214 Sum_probs=57.3
Q ss_pred ccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 042645 151 VGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE 230 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~ 230 (427)
.|-..+..+.+..+......+|.|.|+.|+||||++..+.+... ..-..++.+.-........ ..++...
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~iitiEdp~E~~~~~-----~~q~~v~-- 131 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNIITVEDPVEYQIPG-----INQVQVN-- 131 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEEEECCCceecCCC-----ceEEEeC--
Confidence 34444444444444444556899999999999999998877652 1111222222111111110 0111111
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccccc
Q 042645 231 SWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLA 267 (427)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~ 267 (427)
..........+...|+..+=.|+++++.+.+...
T Consensus 132 ---~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 132 ---EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred ---CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 1111234556677788889999999998776543
No 327
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.023 Score=48.43 Aligned_cols=26 Identities=42% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 328
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0016 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|.+.|.+|+||||+|+++++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 568899999999999999998877
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.35 E-value=0.014 Score=49.77 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44689999999999999999998765
No 330
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.34 E-value=0.024 Score=49.84 Aligned_cols=87 Identities=22% Similarity=0.378 Sum_probs=52.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ....++.+++...-..... .....+...
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34579999999999999999999886 1334477777654 3455666666433111100 001111111
Q ss_pred -------HHHHHHHHhcCCcEEEEEeccC
Q 042645 240 -------KAQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 240 -------~~~~l~~~L~~k~~LlVlDdv~ 261 (427)
..+.++. +++++|+++||+-
T Consensus 89 ~~~~a~t~AEyfrd--~G~dVlli~Dslt 115 (215)
T PF00006_consen 89 APYTALTIAEYFRD--QGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHH--TTSEEEEEEETHH
T ss_pred hhccchhhhHHHhh--cCCceeehhhhhH
Confidence 1222222 6899999999984
No 331
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.33 E-value=0.0085 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|.+|+||||||..+...+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 332
>PRK06217 hypothetical protein; Validated
Probab=96.32 E-value=0.007 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|.+|+||||+|+.+.+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999887
No 333
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.32 E-value=0.012 Score=56.87 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=37.0
Q ss_pred CCccccchhhHHHHHHHhc-------c----C-------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDRVWRCLT-------E----E-------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~-------~----~-------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|.++.++.+...+. . . ....+.++|++|+|||++|+.++..+
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 4568999999988876651 1 1 12579999999999999999998776
No 334
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.31 E-value=0.0097 Score=50.15 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC--CCCHHHHHHHHHHHhCCCCCCCCCCCHHH-HHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR--DLQLGKIQESIAKKIGLYNESWDNKSFDE-KAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~l~~~i~~~l~~~~~~~~~~~~~~-~~~~l 244 (427)
...+++|.|+.|+|||||.+.++.... .....+++.-.. ..+..+.. ....+... . .+..+ ..-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---q-LS~G~~qrl~l 93 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDAR---RAGIAMVY---Q-LSVGERQMVEI 93 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHH---hcCeEEEE---e-cCHHHHHHHHH
Confidence 446899999999999999999987651 223333332111 11111111 11111110 0 22222 22233
Q ss_pred HHHhcCCcEEEEEeccCCccc---ccccccCCCC-CCCCcEEEEecCChhHH
Q 042645 245 FKTMRNRKIVLLLDDIWELFD---LAQVGLPVPS-RASASKVVFTTREFEVC 292 (427)
Q Consensus 245 ~~~L~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~ 292 (427)
...+-.++-++++|+.-+.-+ ...+...+.. ...+..||++|.+....
T Consensus 94 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 94 ARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 445556778999999754322 2222222211 12356788888886643
No 335
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.31 E-value=0.03 Score=50.46 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..|+|++|+|||+|+..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
No 336
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.31 E-value=0.0058 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 337
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.30 E-value=0.0034 Score=55.46 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999873
No 338
>PRK04040 adenylate kinase; Provisional
Probab=96.30 E-value=0.0037 Score=53.99 Aligned_cols=46 Identities=33% Similarity=0.549 Sum_probs=32.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
.+|+|+|++|+||||+++.+.+.+. ..+.. + +..+++..++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~---~------~~g~~~~~~a~~~g~ 48 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK---EDYKI---V------NFGDVMLEVAKEEGL 48 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc---cCCeE---E------ecchHHHHHHHHcCC
Confidence 5799999999999999999998872 12222 2 234566666666664
No 339
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.29 E-value=0.0064 Score=57.92 Aligned_cols=112 Identities=14% Similarity=0.173 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
....|.|.|+.|+||||++..+.+.. .......++. +.++... ..... ..+ ..... .+.+.......+...
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~-i~q~e-vg~~~~~~~~~l~~~ 191 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSL-INQRE-VGLDTLSFANALRAA 191 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cce-EEccc-cCCCCcCHHHHHHHh
Confidence 45789999999999999999988766 2223333332 2221110 00000 000 00000 111123345567778
Q ss_pred hcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhH
Q 042645 248 MRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 291 (427)
|+..+=+|++|++.+.+.+...... ...|..++.|....+.
T Consensus 192 lr~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 192 LREDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSA 232 (343)
T ss_pred hccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCH
Confidence 8889999999999876555432222 2345556666665444
No 340
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.28 E-value=0.0038 Score=53.13 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|+|++|+||||+|+.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999887
No 341
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.023 Score=59.66 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=65.6
Q ss_pred ccccchhhHHHHHHHhcc------C--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHH
Q 042645 149 TVVGMQSTLDRVWRCLTE------E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~ 220 (427)
.++|.++.+..|.+++.. . +.-...+.|+.|+|||-||+.++.-+ .+..+..+-+..+. ...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhh------hhh-
Confidence 467888888888888753 1 34567789999999999999999887 45555555554443 222
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcE-EEEEeccCCc
Q 042645 221 IAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKI-VLLLDDIWEL 263 (427)
Q Consensus 221 i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~ 263 (427)
+.+..+. .+ ..-..+....|.+.++.++| +|+|||++..
T Consensus 633 vskligs-p~---gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGS-PP---GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCC-Cc---ccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 2222232 21 12223344467778888776 7789999754
No 342
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.28 E-value=0.01 Score=54.31 Aligned_cols=89 Identities=18% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------------
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE---------------- 230 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~---------------- 230 (427)
+..+++.|+|.+|+|||+++.++.... ......++||+.... ..++.....+ ++....
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~ 94 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLS 94 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEcccc
Confidence 356899999999999999999998877 344788999988764 4445444432 322110
Q ss_pred --C------CCCCCHHHHHHHHHHHhcC-CcEEEEEeccC
Q 042645 231 --S------WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIW 261 (427)
Q Consensus 231 --~------~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~ 261 (427)
. ....+.+.+...+.+.... +...+|+|.+-
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 95 EKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred ccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 0 0123445566666665543 47788999885
No 343
>PRK12678 transcription termination factor Rho; Provisional
Probab=96.27 E-value=0.0069 Score=60.05 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEE-EEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCCCC
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFV-IWEVVSRDLQ-LGKIQESIAKKIGLYNESWDNKS 236 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~-~wv~~~~~~~-~~~l~~~i~~~l~~~~~~~~~~~ 236 (427)
++++|.- +.....+|+|++|+|||||++.+++.... .+-++. +.+-+.+... +.++.+.+-..+-.. .++...
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas--T~D~p~ 481 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS--TFDRPP 481 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEE--CCCCCH
Confidence 3444432 34567899999999999999999987632 233333 3444554432 333322221111111 111111
Q ss_pred H-----HHHHHHHHHHh--cCCcEEEEEeccC
Q 042645 237 F-----DEKAQEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 237 ~-----~~~~~~l~~~L--~~k~~LlVlDdv~ 261 (427)
. ..+.-.+-+++ .++.+||++|++-
T Consensus 482 ~~~~~~a~~ai~~Ae~fre~G~dVlillDSlT 513 (672)
T PRK12678 482 SDHTTVAELAIERAKRLVELGKDVVVLLDSIT 513 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCch
Confidence 1 11122233344 5799999999985
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.25 E-value=0.017 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 345
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.031 Score=54.28 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++++|+.|+||||++..++...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999887654
No 346
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.33 Score=45.16 Aligned_cols=160 Identities=13% Similarity=0.061 Sum_probs=88.2
Q ss_pred HHHHHHHhccC-CCeEEEEEecCCCcHHHHHHHHHhhccC-------CCCCCcEEEEEEe-CCCCCHHHHHHHHHHHhCC
Q 042645 157 LDRVWRCLTEE-PVGIVGLYGMGGVGKTTLLTQINNSFLH-------TPNDFDFVIWEVV-SRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 157 ~~~l~~~l~~~-~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~~~~f~~~~wv~~-~~~~~~~~l~~~i~~~l~~ 227 (427)
+..+.+.+..+ -.++..++|..|.||+++|..+.+.... ...+.+...++.. +......++. ++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 44556666554 3567779999999999999999877511 1112222223221 1112222222 22222221
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCC-hhHHh-hcCCCcceec
Q 042645 228 YNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTRE-FEVCG-LMDAHKSFKV 303 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~-~~v~~-~~~~~~~~~l 303 (427)
.. .-.+.+=++|+|+++.... ...+...+......+.+|++|.+ ..+.. .......+++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 10 0014677899999876532 33444444444556667765544 33332 2334567899
Q ss_pred cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC
Q 042645 304 ECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG 343 (427)
Q Consensus 304 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G 343 (427)
.++++++..+.+... + .+ .+.+..++...+|
T Consensus 147 ~~l~~~~l~~~l~~~-~-----~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 147 KEPDQQKILAKLLSK-N-----KE---KEYNWFYAYIFSN 177 (299)
T ss_pred CCCCHHHHHHHHHHc-C-----CC---hhHHHHHHHHcCC
Confidence 999999999887764 1 11 1225556666665
No 347
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.22 E-value=0.0057 Score=57.81 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=41.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.+||.++.+..|+..+.++...-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988888888899999999999999997765
No 348
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.22 E-value=0.022 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 349
>PRK00625 shikimate kinase; Provisional
Probab=96.20 E-value=0.0038 Score=53.10 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|+|++|+||||+++.+.+.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 350
>PRK15453 phosphoribulokinase; Provisional
Probab=96.18 E-value=0.043 Score=49.96 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC--CCCHHHHHHHHH--HHhCCCCCC--CCCCCHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR--DLQLGKIQESIA--KKIGLYNES--WDNKSFDEKA 241 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~--~~~~~~l~~~i~--~~l~~~~~~--~~~~~~~~~~ 241 (427)
...+|+|.|.+|+||||+++.+.+.+. ..+ .....++... .++-.++-..+. ..-+...+. ....+.+.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~-~~~--~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~ 80 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR-REN--INAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELE 80 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh-hcC--CCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHH
Confidence 457999999999999999999987662 111 1233333222 223333322221 122222211 3566777788
Q ss_pred HHHHHHhcC
Q 042645 242 QEIFKTMRN 250 (427)
Q Consensus 242 ~~l~~~L~~ 250 (427)
+.++.+.++
T Consensus 81 ~~l~~l~~~ 89 (290)
T PRK15453 81 QLFREYGET 89 (290)
T ss_pred HHHHHHhcC
Confidence 888877654
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.025 Score=49.36 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCcEEEEEeccCCcccccccc------cCCCCCCCCcEEEEecCChhHHhhcCCCcce
Q 042645 240 KAQEIFKTMRNRKIVLLLDDIWELFDLAQVG------LPVPSRASASKVVFTTREFEVCGLMDAHKSF 301 (427)
Q Consensus 240 ~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~------~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~ 301 (427)
....+.+.+--++-+.|||+.++--+.+.+. ..+. ..++-+++.|..+.+.....+...+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 3445555556678899999998754433321 2222 3467788888888888877655444
No 352
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.17 E-value=0.0076 Score=56.91 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=39.9
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+||.++.+..|+-.+.++...-+.|.|.+|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3579999999998888878777778899999999999999998665
No 353
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.16 E-value=0.0069 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|.|++|+||||+|+.+...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998776
No 354
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.14 E-value=0.0085 Score=51.59 Aligned_cols=38 Identities=29% Similarity=0.448 Sum_probs=30.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS 209 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 209 (427)
.+++.|+|+.|+|||||+..+.... ...|...+..+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeeccc
Confidence 4689999999999999999999987 5677655555433
No 355
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.13 E-value=0.027 Score=55.63 Aligned_cols=59 Identities=20% Similarity=0.207 Sum_probs=35.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLY 228 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~ 228 (427)
..+++++|+.|+||||++.+++..+. .......+..+.... .....+-+....+.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 36999999999999999999987762 111112344454432 122334445555555543
No 356
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.12 E-value=0.059 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||++.+..-.
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44689999999999999999997654
No 357
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.021 Score=55.81 Aligned_cols=88 Identities=25% Similarity=0.207 Sum_probs=48.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
.+++.++|++|+||||++..++..+. .......+..++....- ...+-+....+.++++.. ...+..++...+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 35899999999999999998877662 01222355666653311 112233334444554432 22334444444443
Q ss_pred hcCCcEEEEEeccC
Q 042645 248 MRNRKIVLLLDDIW 261 (427)
Q Consensus 248 L~~k~~LlVlDdv~ 261 (427)
+. ..=+|++|..-
T Consensus 297 ~~-~~DlVlIDt~G 309 (424)
T PRK05703 297 LR-DCDVILIDTAG 309 (424)
T ss_pred hC-CCCEEEEeCCC
Confidence 22 34578889763
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=96.10 E-value=0.0079 Score=43.35 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=18.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.+++.|.|++|.|||+++......+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678889999999996655544444
No 359
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.08 E-value=0.007 Score=57.02 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|.+..+..+.-.+.+.+..-+.+.|.+|+||||+|+.+.+-+
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4679999999988766654445569999999999999999997765
No 360
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.08 E-value=0.0054 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|.+.|++|+||||+|+.+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 361
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.07 E-value=0.021 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+++.|++|+||||+++.+.+.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999887
No 362
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.07 E-value=0.036 Score=54.36 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=56.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|.+|+|||||+..+.+... ..+-+.++++-+++.. ...++...+...-..... .....+...
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 456799999999999999999888762 2256777787776543 455666666543221110 001111111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccC
Q 042645 240 ---KAQEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 240 ---~~~~l~~~L---~~k~~LlVlDdv~ 261 (427)
..-.+-+++ +++++||++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 112233444 3799999999984
No 363
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.07 E-value=0.02 Score=55.81 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh-----CCCCCCCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI-----GLYNESWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l-----~~~~~~~~~~~~~~--- 239 (427)
....++|+|..|+|||||++.+.... .....+++..-....++.++....+... ..-... +......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qs-d~~~~~r~~~ 238 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATS-DESPMMRRLA 238 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcC-CCCHHHHHHH
Confidence 44679999999999999999887654 1222344443223344555444443332 111111 1111111
Q ss_pred --HHHHHHHHh--cCCcEEEEEeccCC
Q 042645 240 --KAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 --~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++.+||++||+-.
T Consensus 239 ~~~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 239 PLTATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchHH
Confidence 111223333 47999999999843
No 364
>PRK14528 adenylate kinase; Provisional
Probab=96.07 E-value=0.0092 Score=51.50 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|.|.|++|+||||+++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998776
No 365
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.047 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++++|+.|+||||++.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4699999999999999999988766
No 366
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.06 E-value=0.0047 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++.|.|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998765
No 367
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.021 Score=49.69 Aligned_cols=125 Identities=17% Similarity=0.097 Sum_probs=66.0
Q ss_pred HHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEE--EEEEeCCCCCHHHH-----HHHHHHHhCCCCCCC
Q 042645 160 VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFV--IWEVVSRDLQLGKI-----QESIAKKIGLYNESW 232 (427)
Q Consensus 160 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~~~~~~~~~~l-----~~~i~~~l~~~~~~~ 232 (427)
++..|-+.+..-..|.|++|+|||||.+.++.-.......|-.. .-+.-+.. +..- ...+........
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~~g~R~dVld--- 202 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHGRGRRMDVLD--- 202 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhhhhhhhhhcc---
Confidence 55556565666688999999999999999988764333344322 22221111 0000 000011111000
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhhc
Q 042645 233 DNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGLM 295 (427)
Q Consensus 233 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~ 295 (427)
.....+.+...++ .--+=++|+|++-...+-..+...+ ..|-+++.|..-..+...+
T Consensus 203 ~cpk~~gmmmaIr---sm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~iedl~ 259 (308)
T COG3854 203 PCPKAEGMMMAIR---SMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIEDLI 259 (308)
T ss_pred cchHHHHHHHHHH---hcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHHHhh
Confidence 0011111222222 2357799999998776655554444 4577888777665554443
No 368
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.05 E-value=0.012 Score=49.86 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=32.6
Q ss_pred cccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|....+.++++.+.. ....-|.|+|..|+||+.+|+.+.+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46778888888777653 333567799999999999999998865
No 369
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.05 E-value=0.031 Score=44.19 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHhc----c---CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLT----E---EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|..-..+.+++++. . ..+-|++.+|.+|+|||.+++.+++.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676666666666554 2 245588999999999999999998885
No 370
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.03 E-value=0.0047 Score=53.07 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 371
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.03 E-value=0.014 Score=56.56 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=53.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDEK-- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~-- 240 (427)
....++|.|..|+|||||++.+.+.. ..+.+++.-+++.. ...++...++..-+.... .....+....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45679999999999999999998654 22455556666554 345566665443222110 0011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 ----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 ----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++++||++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 11233344 58999999999843
No 372
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.02 E-value=0.005 Score=52.05 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|.|.+|+|||||++.+++.+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 373
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.01 E-value=0.0057 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+++|.|++|+|||||++.+...+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 374
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.01 E-value=0.051 Score=57.45 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=88.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhcc--C-----------CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFL--H-----------TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDN 234 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~--~-----------~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 234 (427)
+.+++.|+|+.+.||||+.+.+.-... . .-..|+. ++..++...++..-+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~-i~~~ig~~~si~~~lSt-------------- 390 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKE-IFADIGDEQSIEQSLST-------------- 390 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccce-EEEecCCccchhhchhH--------------
Confidence 457899999999999999988753310 0 0011222 22333332222211111
Q ss_pred CCHHHHHHHHHHHhc--CCcEEEEEeccCCcccc---ccc----ccCCCCCCCCcEEEEecCChhHHhhcCCCcceeccC
Q 042645 235 KSFDEKAQEIFKTMR--NRKIVLLLDDIWELFDL---AQV----GLPVPSRASASKVVFTTREFEVCGLMDAHKSFKVEC 305 (427)
Q Consensus 235 ~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~~---~~~----~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~ 305 (427)
.......+...+. ..+-|++||++-.-.+. ..+ ...+. ..|+.+|+||...++.........+.-..
T Consensus 391 --fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~ 466 (782)
T PRK00409 391 --FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENAS 466 (782)
T ss_pred --HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEE
Confidence 1111122222222 47789999998653221 112 22222 24788999999988765543322221111
Q ss_pred --CChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhh
Q 042645 306 --LGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRS 373 (427)
Q Consensus 306 --L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~ 373 (427)
++.+...-.++-..|.. . ...+-.|++++ |+|-.+.--|.-+... .....+.++..|..
T Consensus 467 ~~~d~~~l~~~Ykl~~G~~----g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 467 VEFDEETLRPTYRLLIGIP----G---KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred EEEecCcCcEEEEEeeCCC----C---CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 11111000011111111 1 12377788777 7888888877777653 44466666666544
No 375
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.00 E-value=0.053 Score=46.25 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||++.+..-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 376
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.00 E-value=0.014 Score=52.03 Aligned_cols=64 Identities=27% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCC----CCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 158 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHT----PNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 158 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
+.+...+.... +..|+|++|.||||++..+....... .......+-++...+..+..++..+.+
T Consensus 8 ~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 8 EAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 34444443332 68999999999998777766655110 122333333444444444555554444
No 377
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.00 E-value=0.0048 Score=53.85 Aligned_cols=23 Identities=39% Similarity=0.648 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|++|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 378
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.99 E-value=0.0066 Score=49.66 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=27.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
++|.|+|..|+|||||++.+.+.+. ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 5799999999999999999999983 23344444555544
No 379
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.98 E-value=0.067 Score=49.17 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=36.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
...++.|.|.+|+||||++.+++.... ..+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345889999999999999999887652 12235678887655 345555555443
No 380
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0054 Score=50.96 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=18.8
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQIN 190 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~ 190 (427)
.|+|.|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 381
>PRK14530 adenylate kinase; Provisional
Probab=95.96 E-value=0.0058 Score=54.12 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|.|.|++|+||||+++.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 382
>PRK05922 type III secretion system ATPase; Validated
Probab=95.96 E-value=0.023 Score=55.16 Aligned_cols=91 Identities=13% Similarity=0.242 Sum_probs=50.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----CCCCCCH-HH-
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNE----SWDNKSF-DE- 239 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~-~~- 239 (427)
.....++|.|..|+|||||++.+.+.. ..+...++.++. .....+.+.+.......... .....+. ..
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~ 229 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKV 229 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHH
Confidence 345679999999999999999998764 123333333333 22334555554433322110 0011111 11
Q ss_pred ----HHHHHHHHh--cCCcEEEEEeccCC
Q 042645 240 ----KAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ----~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++++||++||+-.
T Consensus 230 ~a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 230 IAGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 112233444 47999999999853
No 383
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.95 E-value=0.043 Score=53.26 Aligned_cols=90 Identities=22% Similarity=0.369 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC-----CCCCCCHHHH-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNE-----SWDNKSFDEK- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~- 240 (427)
....++|.|..|+|||||++.+.... . . +......+.. .-...++....+..-++... ..+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~-~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT-D---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888765 1 1 2222233332 33455555555443222110 0011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 ----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 ----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++++||++||+-.
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233444 47999999999853
No 384
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.014 Score=50.18 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=33.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..+|+|-||-|+||||||+.+.+++. | .+.+-.+.+++-+..++.++-
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~-----~-~~~~E~vednp~L~~FY~d~~ 51 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG-----F-KVFYELVEDNPFLDLFYEDPE 51 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC-----C-ceeeecccCChHHHHHHHhHH
Confidence 46899999999999999999999982 2 223334445544555555443
No 385
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.95 E-value=0.046 Score=49.67 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=57.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC-CCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCH-HH-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH-TPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSF-DE- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~-~~- 239 (427)
....++|.|..|+|||+|+..+.++..- ...+-+.++++-+++.. ...+++..+...=.+... .....+. ..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4567899999999999999998877520 12335677888887654 456666666553222110 0011111 11
Q ss_pred ----HHHHHHHHh---cCCcEEEEEeccCC
Q 042645 240 ----KAQEIFKTM---RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ----~~~~l~~~L---~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++++|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 111233444 36899999999854
No 386
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.95 E-value=0.0074 Score=51.50 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999887
No 387
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.95 E-value=0.0027 Score=54.78 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.2
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQIN 190 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~ 190 (427)
++.|+|+.|.||||+.+.+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred CEEEECCCCCcHHHHHHHHH
Confidence 47899999999999999987
No 388
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.94 E-value=0.0055 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.|.|++|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 389
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.93 E-value=0.025 Score=52.78 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.0
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
+.++=.......++.++..+ +.|.|.|++|+||||+|+.++..+ ... .+.|+++...+..++.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l---~~~---~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL---NWP---CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH---CCC---eEEEEecCCCChhhcC
Confidence 44554555566677777543 459999999999999999999987 222 2345555555444433
No 390
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.93 E-value=0.014 Score=51.01 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=27.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ 213 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 213 (427)
.|+|+|-||+||||+|..++..+..... ..+.=|...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~--~~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG--YNVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC--ceEEEEeCCCCCC
Confidence 5899999999999999997766632222 2344455554444
No 391
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.90 E-value=0.0074 Score=52.12 Aligned_cols=102 Identities=17% Similarity=0.060 Sum_probs=52.3
Q ss_pred HHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCC
Q 042645 157 LDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL--YNESWDN 234 (427)
Q Consensus 157 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~--~~~~~~~ 234 (427)
..+++...... ...++|.|+.|+|||||++.+..... ... ..+.+ ... .++...-...... .......
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i~---~~~-~~i~i--ed~---~E~~~~~~~~~~~~~~~~~~~~ 83 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFIP---PDE-RIITI--EDT---AELQLPHPNWVRLVTRPGNVEG 83 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhcC---CCC-CEEEE--CCc---cccCCCCCCEEEEEEecCCCCC
Confidence 34444444333 46899999999999999999887652 111 12211 111 0000000000000 0000011
Q ss_pred CCHHHHHHHHHHHhcCCcEEEEEeccCCcccccc
Q 042645 235 KSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQ 268 (427)
Q Consensus 235 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~ 268 (427)
.......+.+...++..+=.++++++.+.+.+..
T Consensus 84 ~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~ 117 (186)
T cd01130 84 SGEVTMADLLRSALRMRPDRIIVGEVRGGEALDL 117 (186)
T ss_pred CCccCHHHHHHHHhccCCCEEEEEccCcHHHHHH
Confidence 1223344556667777788899999987665543
No 392
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.90 E-value=0.065 Score=52.23 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=52.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDEK-- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~-- 240 (427)
....++|+|..|+|||||++.+++.. ..+.++++-+++.. ...++..+.+..-++... .....+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55789999999999999999998765 12345556665544 344555544443222110 0011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 ----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 ----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++.+||++||+-.
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11233444 48999999999843
No 393
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.89 E-value=0.061 Score=50.49 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++++|++|+||||++..++..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998887
No 394
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.89 E-value=0.01 Score=53.30 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.3
Q ss_pred EEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 174 LYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 174 I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
|+|++|+||||+++.+.+... .....++-|+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~---~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE---SNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT---TT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHH---hccCCceEEEcch
Confidence 689999999999999999882 3334456666544
No 395
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.88 E-value=0.013 Score=50.65 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=33.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++++|.+..+..+.-+.... .-+.++|++|+|||++|+.+..-+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 45789888888887666654 579999999999999999987644
No 396
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.88 E-value=0.024 Score=55.51 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred hhhHHHHHHHhc-----cC--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 154 QSTLDRVWRCLT-----EE--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 154 ~~~~~~l~~~l~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+.++..||. .+ +.++..|+|++|+||||.++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677778876 33 55699999999999999999998776
No 397
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.88 E-value=0.089 Score=49.35 Aligned_cols=90 Identities=21% Similarity=0.279 Sum_probs=50.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|..|+|||||++.+.... . .+......+.. ..+..++.......-++... .....+...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45679999999999999999888765 1 22333444442 33555555555544322110 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccCC
Q 042645 240 ---KAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ---~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++.+||++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 111222333 48999999999743
No 398
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.86 E-value=0.043 Score=49.55 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=44.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHh--CCCCCC--CCCCCHHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD--LQLGKIQESIAKKI--GLYNES--WDNKSFDEKAQEI 244 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~--~~~~~l~~~i~~~l--~~~~~~--~~~~~~~~~~~~l 244 (427)
+|+|.|.+|+||||++..+.+.+. ..+ ..+..++...- ++-...-..+.... +...+. ....+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~-~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA-REG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH-hcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999988772 111 12333432221 22222222222221 112111 3556777788888
Q ss_pred HHHhcCCc
Q 042645 245 FKTMRNRK 252 (427)
Q Consensus 245 ~~~L~~k~ 252 (427)
+.+.+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 88777654
No 399
>PRK14529 adenylate kinase; Provisional
Probab=95.85 E-value=0.035 Score=49.15 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=44.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhccCCCCCCcEE--EEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSFLHTPNDFDFV--IWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~--~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
|.|.|++|+||||+++.+...+ . ..+.+.. +.-.+..........++++.+- ...+.+-....+.+.+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~-~-~~~is~gdllr~~i~~~t~lg~~i~~~i~~G-------~lvpdei~~~lv~~~l~ 73 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY-D-LAHIESGAIFREHIGGGTELGKKAKEYIDRG-------DLVPDDITIPMILETLK 73 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH-C-CCCcccchhhhhhccCCChHHHHHHHHHhcc-------CcchHHHHHHHHHHHHh
Confidence 7889999999999999999887 2 1222211 1111222223333333443321 12233444555566664
Q ss_pred CC-cEEEEEeccCC
Q 042645 250 NR-KIVLLLDDIWE 262 (427)
Q Consensus 250 ~k-~~LlVlDdv~~ 262 (427)
+. .-=+|||.+-.
T Consensus 74 ~~~~~g~iLDGfPR 87 (223)
T PRK14529 74 QDGKNGWLLDGFPR 87 (223)
T ss_pred ccCCCcEEEeCCCC
Confidence 31 34589999864
No 400
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.025 Score=51.68 Aligned_cols=59 Identities=27% Similarity=0.326 Sum_probs=37.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCC-------CCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCC
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPN-------DFDFVIWEVVSRD-LQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~ 229 (427)
++.|+|.+|+|||||+...+=.+....+ ....+++|++... .++-.=++.+..+++++.
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 5667799999999998776544432222 3346677776532 344455566777777654
No 401
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.84 E-value=0.061 Score=52.67 Aligned_cols=92 Identities=18% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDEK-- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~-- 240 (427)
....++|.|.+|+|||||+..+..... . ++-+.++++-+++.. ...+++.++...-..... .....++...
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~-~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA-K-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-h-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456799999999999999999876652 1 222456777776543 456666666653222110 0011112111
Q ss_pred ----HHHHHHHh---cCCcEEEEEeccC
Q 042645 241 ----AQEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 241 ----~~~l~~~L---~~k~~LlVlDdv~ 261 (427)
.-.+-+++ +++++||++|++-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 12234454 6799999999984
No 402
>PRK08149 ATP synthase SpaL; Validated
Probab=95.84 E-value=0.038 Score=53.64 Aligned_cols=90 Identities=18% Similarity=0.293 Sum_probs=51.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCC-----CCCCCCCHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYN-----ESWDNKSFD--- 238 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~-----~~~~~~~~~--- 238 (427)
....++|.|..|+|||||+..++... ..+.++...+.. ..+..++..+......... ...+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45679999999999999999988754 123333444433 2345566666665432211 010111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEeccCC
Q 042645 239 --EKAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 239 --~~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
...-.+-+++ +++++||++||+-.
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 1122233333 48999999999853
No 403
>PRK13949 shikimate kinase; Provisional
Probab=95.83 E-value=0.0071 Score=51.28 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|+|++|+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999887
No 404
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.83 E-value=0.01 Score=63.31 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=99.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCCC----CHH--HHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDFVIWEVVSRDL----QLG--KIQESIAKKIGLYNESWDNKSFDEKAQ 242 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~----~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~~ 242 (427)
.-+.|+|.+|+||||+...++-....... .-+..+++.+.... ... .+..-+...+.... ...+...
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~------~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG------IAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC------CcchhhH
Confidence 47999999999999999998766632221 11223444433110 111 22222222222211 1122333
Q ss_pred HHHHHhcCCcEEEEEeccCCccc------ccccccCCCCCCCCcEEEEecCChhHHhhcCCCcceeccCCChHHHHHHHH
Q 042645 243 EIFKTMRNRKIVLLLDDIWELFD------LAQVGLPVPSRASASKVVFTTREFEVCGLMDAHKSFKVECLGYEDAWRLFE 316 (427)
Q Consensus 243 ~l~~~L~~k~~LlVlDdv~~~~~------~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~~~~~~~l~~L~~~e~~~lf~ 316 (427)
...++++..++++++|.++.... ...+ ..+...-+.+.+|+|+|....-........+++..+.++.......
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i-~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREI-NKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHH-HHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 33678889999999999876421 1111 1122233578899999986654443334455666666655554433
Q ss_pred HHh-----CC-CCCCCCC---CHHHH---HHHHHHHcCCCchHHHHHHHHHcCC-----CChHHHHHHHHHHh
Q 042645 317 EKV-----GR-DILDSHP---DIPEL---AETVARECGGLPLALITVGRAMASK-----KAPREWAHAIEVLR 372 (427)
Q Consensus 317 ~~~-----~~-~~~~~~~---~~~~~---~~~i~~~~~G~Plai~~~~~~L~~~-----~~~~~w~~~l~~l~ 372 (427)
... .. ......+ ....+ ...-.+.....|+.+.+.+..-... ....-++.+++.+-
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 211 10 0000111 00111 1122233477899998888555421 34455555555443
No 405
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.82 E-value=0.013 Score=54.69 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=41.2
Q ss_pred CccccchhhHHHHHHHhcc------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|.++.++++++.+.. ...+++.+.|+.|.|||||+..+-+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999863 367899999999999999999998877
No 406
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.048 Score=57.31 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=80.5
Q ss_pred hhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-
Q 042645 154 QSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW- 232 (427)
Q Consensus 154 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~- 232 (427)
...+.+|++.+.+. .++.|.|..|+||||-.-+++-+.. ......+-+.=........+-..+++.++......
T Consensus 52 ~~~~~~i~~ai~~~--~vvii~getGsGKTTqlP~~lle~g---~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 52 TAVRDEILKAIEQN--QVVIIVGETGSGKTTQLPQFLLEEG---LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHHHhC--CEEEEeCCCCCChHHHHHHHHHhhh---cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 45677777777654 5799999999999999988887652 11222232222222345667777777776542110
Q ss_pred ----------------CCCCHHHHHHHHH-HHhcCCcEEEEEeccCCccccccc-----ccCCCCCCCCcEEEEecCChh
Q 042645 233 ----------------DNKSFDEKAQEIF-KTMRNRKIVLLLDDIWELFDLAQV-----GLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 233 ----------------~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~~~~~~~-----~~~l~~~~~gs~IivTtR~~~ 290 (427)
.-.+...+.+.+. +.+-.+--.||+|++++..--.++ ...+......-||||+|-.-+
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 1123344444444 233345558999999875322111 111222223478999887644
Q ss_pred ---HHhhcCCCccee
Q 042645 291 ---VCGLMDAHKSFK 302 (427)
Q Consensus 291 ---v~~~~~~~~~~~ 302 (427)
++..++....++
T Consensus 207 ~~rfs~~f~~apvi~ 221 (845)
T COG1643 207 AERFSAYFGNAPVIE 221 (845)
T ss_pred HHHHHHHcCCCCEEE
Confidence 344444333333
No 407
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.82 E-value=0.074 Score=59.92 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+-|.++|++|+|||.||+.++.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 35678999999999999999999876
No 408
>PLN02165 adenylate isopentenyltransferase
Probab=95.81 E-value=0.01 Score=55.41 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 165 TEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 165 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
......+++|+|+.|+||||||..++..+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 34456699999999999999999998886
No 409
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.81 E-value=0.056 Score=54.60 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-------------CCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE-------------SWDN 234 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~-------------~~~~ 234 (427)
...++.|.|.+|+|||+|+.+++.... ..-..++|++.... +.++...+ ..++.+.. ....
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 456899999999999999999987652 23457788877653 45554443 34443211 0112
Q ss_pred CCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 235 KSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 235 ~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
.+.++....+.+.+.. +.-++|+|.+-.
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 2345556666665543 556899999853
No 410
>PRK13947 shikimate kinase; Provisional
Probab=95.80 E-value=0.0078 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|+|++|+||||+++.+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 411
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.80 E-value=0.011 Score=48.30 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=31.7
Q ss_pred ccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 151 VGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
||+...++++.+.+.. .....|.|+|..|+||+++|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666777777777653 344568999999999999999988765
No 412
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.79 E-value=0.0077 Score=51.63 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++++|+|+.|+|||||++.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998865
No 413
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.79 E-value=0.0083 Score=47.36 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 414
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.79 E-value=0.009 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++++|+|..|+|||||++.+...+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 415
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.37 Score=42.92 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=36.7
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+++=|-+..+++|++++.- ..++-+..||++|.|||-+|+..+.+-
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3566889999999998742 245678999999999999999887654
No 416
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.78 E-value=0.011 Score=56.48 Aligned_cols=76 Identities=13% Similarity=0.203 Sum_probs=43.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
.+-+=|||..|.|||.|+-.+|+... .... .++ -...+..++-+.+..... .... +..+.+.+
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp-~~~k--~R~--------HFh~Fm~~vh~~l~~~~~--~~~~----l~~va~~l 124 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLP-IKRK--RRV--------HFHEFMLDVHSRLHQLRG--QDDP----LPQVADEL 124 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCC-cccc--ccc--------cccHHHHHHHHHHHHHhC--CCcc----HHHHHHHH
Confidence 45688999999999999999999883 2110 111 112233333333321110 1112 33344555
Q ss_pred cCCcEEEEEeccC
Q 042645 249 RNRKIVLLLDDIW 261 (427)
Q Consensus 249 ~~k~~LlVlDdv~ 261 (427)
.++..||.||++.
T Consensus 125 ~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 125 AKESRLLCFDEFQ 137 (362)
T ss_pred HhcCCEEEEeeee
Confidence 6677799999975
No 417
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.06 Score=47.90 Aligned_cols=89 Identities=21% Similarity=0.287 Sum_probs=53.0
Q ss_pred cccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHH
Q 042645 150 VVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGK 216 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~ 216 (427)
+=|=.+.+++|.+.+.- +..+-|.++|++|.|||-+|+.|+|+- ..- |+.+-
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---dac-----firvi------- 243 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DAC-----FIRVI------- 243 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cce-----EEeeh-------
Confidence 33455566666554421 245678999999999999999999875 222 22221
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
-.++.+..-. .-......+.+.-+. |-++|.+|+++.
T Consensus 244 -gselvqkyvg--------egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 244 -GSELVQKYVG--------EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred -hHHHHHHHhh--------hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 1122222111 113445556665554 668999999864
No 418
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.77 E-value=0.0095 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|.|.+|+||||+|+.+++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998875
No 419
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.76 E-value=0.011 Score=52.10 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=26.3
Q ss_pred hccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 164 LTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 164 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+.++|+++|+.|+|||||..++.+..
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344578999999999999999999998875
No 420
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.75 E-value=0.018 Score=58.87 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=32.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
.++..|.|.+|.||||++..+...+.+....-...+.+.....--...+...+.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 468999999999999999888776522111112344444443333344444443
No 421
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.75 E-value=0.025 Score=54.42 Aligned_cols=38 Identities=24% Similarity=0.270 Sum_probs=31.4
Q ss_pred hHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 156 TLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 156 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+.+++.+.......+.|.|+||.|||+|.+.+.+.+
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 44556666666667789999999999999999999887
No 422
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.75 E-value=0.0051 Score=54.55 Aligned_cols=111 Identities=11% Similarity=0.048 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh-ccCCCCCCcE----------EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS-FLHTPNDFDF----------VIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKS 236 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~~f~~----------~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~ 236 (427)
..+++.|.|+.|.||||+.+.+... .....+.|.. .++..+....++.. ....
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~----------------~~St 93 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQH----------------GMST 93 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCcccccc----------------ccch
Confidence 3468899999999999999888762 2111111110 11222222111111 1122
Q ss_pred HHHHHHHHHHHhc--CCcEEEEEeccCCccc-------ccccccCCCCCCCCcEEEEecCChhHHhhc
Q 042645 237 FDEKAQEIFKTMR--NRKIVLLLDDIWELFD-------LAQVGLPVPSRASASKVVFTTREFEVCGLM 295 (427)
Q Consensus 237 ~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~-------~~~~~~~l~~~~~gs~IivTtR~~~v~~~~ 295 (427)
...-...+...++ .++-|++||++..-.+ ...+...+... .++.+|++|....++...
T Consensus 94 F~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 94 FMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 2233333444443 4789999999743211 11122223222 478899999998886554
No 423
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.73 E-value=0.054 Score=49.23 Aligned_cols=90 Identities=10% Similarity=0.115 Sum_probs=49.9
Q ss_pred CCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCcEE-EEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFDFV-IWEVVSRDL-QLGKIQESIAKKIGLYN-----ESWDNKSFDE 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~~~~~-~~~~l~~~i~~~l~~~~-----~~~~~~~~~~ 239 (427)
....++|.|.+|+|||+|+ ..+.+.. .-+.+ +++-+.+.. ...++...+...-.... ...+......
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 4467999999999999995 5555543 22333 666666553 45566666654321110 0001111111
Q ss_pred H-----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 240 K-----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ~-----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
. .-.+-+++ +++.+||++||+-.
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 0 11222232 47999999999854
No 424
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.73 E-value=0.0093 Score=48.62 Aligned_cols=23 Identities=43% Similarity=0.733 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|+|+.|+|||||++.+.+.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998875
No 425
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.73 E-value=0.023 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|.|..|+||||+++.+.+.+
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 426
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.03 Score=46.79 Aligned_cols=118 Identities=21% Similarity=0.192 Sum_probs=59.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
+..+++|.|..|.|||||++.+..... .....+++.-...... ........++.... -........ .+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q--lS~G~~~r~-~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK----PTSGEILIDGKDIAKL--PLEELRRRIGYVPQ--LSGGQRQRV-ALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEEEECCEEcccC--CHHHHHhceEEEee--CCHHHHHHH-HHHHH
Confidence 346899999999999999999987651 2233344332111100 00111111221110 011122222 34444
Q ss_pred hcCCcEEEEEeccCCccc---ccccccCCCC-CCCCcEEEEecCChhHHhh
Q 042645 248 MRNRKIVLLLDDIWELFD---LAQVGLPVPS-RASASKVVFTTREFEVCGL 294 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~~~---~~~~~~~l~~-~~~gs~IivTtR~~~v~~~ 294 (427)
+...+-++++|+.-...+ ...+...+.. ...+..++++|.+......
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 555678999999864322 1222222211 1124678888888766544
No 427
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.71 E-value=0.026 Score=45.39 Aligned_cols=36 Identities=22% Similarity=-0.047 Sum_probs=25.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEE
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEV 207 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 207 (427)
.+.|.|+.|+|||+.+..+...... ......+++++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~-~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD-SLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh-cccCCCEEEEc
Confidence 4789999999999998888777622 22345566664
No 428
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.70 E-value=0.012 Score=54.91 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=30.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
+++.+.|-||+||||+|...+-...+ .+ ..++-++..+..++.+++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence 67899999999999999887776632 22 335555555444444433
No 429
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.69 E-value=0.068 Score=48.17 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=34.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
...++.|.|.+|+|||+++.+++.+.. ..+-..++|++... +..++...+.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHH
Confidence 346899999999999999999877662 12234567776554 3455555554
No 430
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.69 E-value=0.0072 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 431
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.35 Score=44.55 Aligned_cols=38 Identities=5% Similarity=0.040 Sum_probs=30.0
Q ss_pred hHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 156 TLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 156 ~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-++|.+.+..+. .....++|+.|+||+++|..++...
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 3456777776654 4577899999999999999988776
No 432
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.68 E-value=0.01 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998875
No 433
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.68 E-value=0.023 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 434
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.67 E-value=0.067 Score=52.27 Aligned_cols=92 Identities=22% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----CCCCCCHHH--
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE-----SWDNKSFDE-- 239 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~-- 239 (427)
.....++|.|..|+|||||++.++... .. -..++...-.......++...+...-++... ..+......
T Consensus 161 ~~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~ 236 (441)
T PRK09099 161 GEGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAK 236 (441)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHH
Confidence 355689999999999999999998765 11 1233333323333455555555443222110 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccCC
Q 042645 240 ---KAQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ---~~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++++||++||+-.
T Consensus 237 a~~~a~tiAEyfrd~G~~VLl~~DslTr 264 (441)
T PRK09099 237 AAYVATAIAEYFRDRGLRVLLMMDSLTR 264 (441)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 111233344 47999999999843
No 435
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.67 E-value=0.066 Score=52.73 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=53.2
Q ss_pred CCeEEEEEecCCCcHHHHH-HHHHhhccC----CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-----CCCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLL-TQINNSFLH----TPNDFDFVIWEVVSRDLQLGKIQESIAKKIG-LYNE-----SWDNKS 236 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~-~~~~-----~~~~~~ 236 (427)
....++|.|..|+|||+|| ..+.++... ...+-..++++.+++......-+...++.-+ +... ..+...
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4567999999999999996 556665310 1124456788888876543333444444433 2110 001111
Q ss_pred HHHH-----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 237 FDEK-----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 237 ~~~~-----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
..+. .-.+-+++ +++.+|+|+||+-.
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1111 11222333 47999999999854
No 436
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.67 E-value=0.0089 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|+|++|+||||+|+.+...+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 437
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.018 Score=48.11 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.1
Q ss_pred hccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 164 LTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 164 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+..+|.+.|.+|+||||+|..+...+
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 344566799999999999999999999988
No 438
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.64 E-value=0.042 Score=47.75 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998754
No 439
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.64 E-value=0.16 Score=52.88 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|....+.++.+.+.. .....|.|+|..|+||+++|+.+.+..
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4578998888888777653 233348899999999999999998765
No 440
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.64 E-value=0.013 Score=52.29 Aligned_cols=60 Identities=18% Similarity=0.217 Sum_probs=37.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC---------CCCCHHH--HHHHHHHHhCCCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS---------RDLQLGK--IQESIAKKIGLYNE 230 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~---------~~~~~~~--l~~~i~~~l~~~~~ 230 (427)
....|.++||+|+||||..+.++.+.. .+ +..-+-+++. .+.++++ -+++..++.++..+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~-~~--~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLH-AK--KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHh-hc--cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 456788899999999999999998872 22 2222223322 2234443 35577777776543
No 441
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.62 E-value=0.019 Score=47.75 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=29.8
Q ss_pred hhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 155 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 155 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|.+.+.. +++++.|..|+|||||+..+....
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456677777755 689999999999999999998764
No 442
>PLN02200 adenylate kinase family protein
Probab=95.62 E-value=0.011 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|.|++|+||||+|+.+.+.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 443
>PRK13975 thymidylate kinase; Provisional
Probab=95.61 E-value=0.01 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|.|+.|+||||+++.+.+.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999988
No 444
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.59 E-value=0.021 Score=53.41 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=31.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
.+++...|.||+||||+|...+-.... .+ ..++-|+..+..++.+++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~-~g--~kvLlvStDPAhsL~d~f 48 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE-SG--KKVLLVSTDPAHSLGDVF 48 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH-cC--CcEEEEEeCCCCchHhhh
Confidence 478999999999999999887665522 22 335556555444444433
No 445
>PRK06761 hypothetical protein; Provisional
Probab=95.58 E-value=0.025 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|.|.|++|+||||+++.+++.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 446
>COG4240 Predicted kinase [General function prediction only]
Probab=95.58 E-value=0.066 Score=46.61 Aligned_cols=85 Identities=14% Similarity=0.005 Sum_probs=53.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC---CCCCCCCCCHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL---YNESWDNKSFDEKAQE 243 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~---~~~~~~~~~~~~~~~~ 243 (427)
++.-+++|.|+-|+||||++..+++.+. .++. ..+...++.+-+-...-...++++... ........++.-..+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~-~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLA-AKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHH-Hhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 4566899999999999999999999883 2222 356666655544444444455555321 1111134566666777
Q ss_pred HHHHhcCCcE
Q 042645 244 IFKTMRNRKI 253 (427)
Q Consensus 244 l~~~L~~k~~ 253 (427)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 7777777643
No 447
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.57 E-value=0.1 Score=50.90 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=53.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHH--
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDEK-- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~-- 240 (427)
....++|.|..|+|||||+..+++.. ..+.++++-+++.. ...++....+..-+.... .....+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999998775 22456777776553 344555443332221110 0011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 ----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 ----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++++||++||+-.
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 11233333 58999999999853
No 448
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.56 E-value=0.05 Score=54.96 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=55.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---------------- 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---------------- 231 (427)
..+++.|.|.+|+|||+|+.++..... ..+-..++|++... +..++...+.. ++.....
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee--~~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGI--KRFDEPGVFVTFEE--SPEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCEEEEEccC--CHHHHHHHHHH-cCCCHHHHhhCCeEEEEecCccc
Confidence 567999999999999999999876542 12235678887765 34455554432 3322100
Q ss_pred -----CCCCCHHHHHHHHHHHhcC-CcEEEEEeccCC
Q 042645 232 -----WDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWE 262 (427)
Q Consensus 232 -----~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 262 (427)
....+.+.+...+.+.+.. +.-.+|+|.+..
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 0112344555566655543 556799999854
No 449
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.56 E-value=0.013 Score=50.57 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998765
No 450
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.057 Score=48.75 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=36.3
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++=|-+..+++|.+.+.- ...+-|.+||.+|.|||-||+.|+|+-
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT 243 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc
Confidence 455788888888888642 135568899999999999999999976
No 451
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.53 E-value=0.032 Score=52.46 Aligned_cols=36 Identities=22% Similarity=0.419 Sum_probs=28.7
Q ss_pred HHHHHHhc--cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 158 DRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 158 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|++.+. .++..+|+|.|.+|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555543 3567899999999999999999988877
No 452
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.53 E-value=0.09 Score=51.35 Aligned_cols=93 Identities=23% Similarity=0.325 Sum_probs=56.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|.+|+|||+|+..+..... ..+-+.++++-+++.. ...+++.++...-.+... .....+...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 456799999999999999999887752 2234677888887654 455666666543221110 001111211
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccCC
Q 042645 240 ---KAQEIFKTM---RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ---~~~~l~~~L---~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++++||++||+-.
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 112233454 46899999999853
No 453
>PHA02244 ATPase-like protein
Probab=95.52 E-value=0.032 Score=52.84 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=29.9
Q ss_pred CccccchhhH----HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTL----DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~----~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|..... ..+..++..+. -|.|+|++|+|||+||+.+++..
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh
Confidence 3455654433 34444444332 47889999999999999999876
No 454
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.51 E-value=0.061 Score=47.07 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC-CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH-TPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW-DNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 245 (427)
..+++.|.|+.|.||||+.+.+..-..- .-+.| +.... .. -.+...|...++...... .......-...+.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~ 100 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETA 100 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHH
Confidence 3478999999999999998887533210 00111 11100 00 012222222222211100 0011111111222
Q ss_pred HHh--cCCcEEEEEeccCCcc---c----ccccccCCCCCCCCcEEEEecCChhHHhhcC
Q 042645 246 KTM--RNRKIVLLLDDIWELF---D----LAQVGLPVPSRASASKVVFTTREFEVCGLMD 296 (427)
Q Consensus 246 ~~L--~~k~~LlVlDdv~~~~---~----~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~ 296 (427)
..+ ..++-|+++|+...-. + ...+...+. ..++.+|++|.+..++....
T Consensus 101 ~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 101 YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 222 3578899999984321 1 112222232 23788999999988876654
No 455
>PRK14532 adenylate kinase; Provisional
Probab=95.51 E-value=0.011 Score=51.16 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|.|++|+||||+|+.+++.+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998876
No 456
>PHA02774 E1; Provisional
Probab=95.51 E-value=0.033 Score=55.59 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=34.0
Q ss_pred hHHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe
Q 042645 156 TLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV 208 (427)
Q Consensus 156 ~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 208 (427)
-+..|..++.. ++...+.|+|++|.|||.+|..+.+-+ . ...+.|++.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L-~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL-K----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh-C----CCEEEEEEC
Confidence 44555555544 345689999999999999999998876 1 233556664
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.50 E-value=0.011 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.5
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 042645 172 VGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (427)
|+|.|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999865
No 458
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.49 E-value=0.098 Score=50.94 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=52.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
+....++|.|..|+|||||+..++... . . ...++...-.......+++...+..-++... .....+...
T Consensus 154 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~--~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 154 GIGQKIGIFAGSGVGKSTLLGMIAKNA-K--A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccC-C--C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHH
Confidence 345689999999999999999998765 1 1 1123322222335666676666554332210 001111111
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccCCc
Q 042645 240 ---KAQEIFKTM--RNRKIVLLLDDIWEL 263 (427)
Q Consensus 240 ---~~~~l~~~L--~~k~~LlVlDdv~~~ 263 (427)
....+-+++ ++++.||++||+-..
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 112233333 479999999998543
No 459
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.47 E-value=0.013 Score=49.76 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|+|+.|+||||+++.+.+.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999876
No 460
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.47 E-value=0.023 Score=49.46 Aligned_cols=36 Identities=28% Similarity=0.376 Sum_probs=27.6
Q ss_pred HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 158 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 158 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.+..+...+.+++.|.|++|+||||++..+...+
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 334444444455789999999999999999988777
No 461
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.46 E-value=0.011 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|.|.|++|+||||+|+.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998875
No 462
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.46 E-value=0.052 Score=52.98 Aligned_cols=93 Identities=17% Similarity=0.321 Sum_probs=56.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHH---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDE--- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~--- 239 (427)
....++|.|.+|+|||||+..+..... .++-..++++-+++.. ...+++..+...-..... .....+...
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 456799999999999999999887652 2223466777776543 456666666543221110 001112111
Q ss_pred ---HHHHHHHHh---cCCcEEEEEeccCC
Q 042645 240 ---KAQEIFKTM---RNRKIVLLLDDIWE 262 (427)
Q Consensus 240 ---~~~~l~~~L---~~k~~LlVlDdv~~ 262 (427)
..-.+-+++ +++++||++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 112334455 46899999999853
No 463
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.46 E-value=0.015 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+|+|+|.+|+||||||+.+...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998876
No 464
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.45 E-value=0.063 Score=51.43 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=31.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD 211 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 211 (427)
.++.|.|.+|.|||.||..++..+ ..........+++.+..
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecch
Confidence 579999999999999999999887 22344555666666654
No 465
>PRK14531 adenylate kinase; Provisional
Probab=95.45 E-value=0.012 Score=50.54 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|+|++|+||||+++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998876
No 466
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.45 E-value=0.033 Score=50.52 Aligned_cols=100 Identities=15% Similarity=0.195 Sum_probs=57.2
Q ss_pred ccccchhhHHHHHHHhcc----C---CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 149 TVVGMQSTLDRVWRCLTE----E---PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~----~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
.++|..-..+.++..+.+ + ++=+++.+|.+|+||...++.+++.......+-+.+ ...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V---------------~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFV---------------HHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhH---------------HHh
Confidence 456766666666666653 2 455899999999999999999998873322222221 111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEeccCCc
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~ 263 (427)
...+.-+.+.....--+++...++..++ -++-|+|+|+++..
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111111110000111233444444443 48999999999875
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.45 E-value=0.012 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 468
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.014 Score=48.11 Aligned_cols=48 Identities=33% Similarity=0.461 Sum_probs=34.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 229 (427)
..++.|+|.+|+||||+.+.+.... +. +.. .+-.++.-+++...++..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l--~~--~~i---------vNyG~~Mle~A~k~glve 51 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL--VK--HKI---------VNYGDLMLEIAKKKGLVE 51 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH--hh--cee---------eeHhHHHHHHHHHhCCcc
Confidence 4789999999999999998887654 11 111 244667778887777643
No 469
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.42 E-value=0.088 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+....++|+|+.|+|||||++.+..-+
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999998665
No 470
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=95.40 E-value=0.062 Score=52.34 Aligned_cols=27 Identities=37% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.....++|.|..|+|||||+..+....
T Consensus 153 ~~GQ~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 153 GKGQRVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred ecceEEEEECCCCCCccHHHHHHhccc
Confidence 355789999999999999999887754
No 471
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.39 E-value=0.1 Score=51.04 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=51.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCC-----CCCCCCHHHH-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNE-----SWDNKSFDEK- 240 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~- 240 (427)
....++|+|..|+|||||++.+.... ..+.++...+... .....+...+...-++... ..+.......
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45679999999999999999887653 1234444444433 2455555555544322210 0011111111
Q ss_pred ----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 ----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 ----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++++||++||+-.
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR 269 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTR 269 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhH
Confidence 11233343 58999999999853
No 472
>COG1158 Rho Transcription termination factor [Transcription]
Probab=95.38 E-value=0.17 Score=46.73 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=61.9
Q ss_pred hHHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC-C-CCCHHHHHHHHHHHhCCCCCCC
Q 042645 156 TLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS-R-DLQLGKIQESIAKKIGLYNESW 232 (427)
Q Consensus 156 ~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~-~-~~~~~~l~~~i~~~l~~~~~~~ 232 (427)
.-.++++++.- +....-.|+.++-.|||+|.+.+++... ..|.++..||-+- . +-.+.++.+++-...-.+.-+.
T Consensus 159 ls~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt--~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDe 236 (422)
T COG1158 159 LSTRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAIT--TNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDE 236 (422)
T ss_pred chhHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHh--cCCCceEEEEEEecCCchHHHHHHHhhcceEEeecCCC
Confidence 34456666643 3445678999999999999999999973 6788888888753 2 2234555555543222111111
Q ss_pred CCCCHHHHH----HHHHHHhc-CCcEEEEEeccC
Q 042645 233 DNKSFDEKA----QEIFKTMR-NRKIVLLLDDIW 261 (427)
Q Consensus 233 ~~~~~~~~~----~~l~~~L~-~k~~LlVlDdv~ 261 (427)
.....-+.. ++-+.... ++.++|+||.+-
T Consensus 237 pp~~HvqVAE~viEkAKRlVE~~kDVVILLDSIT 270 (422)
T COG1158 237 PPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 270 (422)
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHH
Confidence 112222222 22333333 678899999864
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.37 E-value=0.016 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQIN 190 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~ 190 (427)
...++|.|+.|+|||||+..+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999975
No 474
>PRK13948 shikimate kinase; Provisional
Probab=95.36 E-value=0.018 Score=49.33 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|.++|+.|+||||+++.+.+.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999887
No 475
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.34 E-value=0.011 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.++|++|+||||+|+.+...+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999877
No 476
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.024 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|..|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 44689999999999999999987543
No 477
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.33 E-value=0.017 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
....|.|+|++|+|||||+..+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4578999999999999999998754
No 478
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=95.33 E-value=0.16 Score=49.61 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=49.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCC----CCCCCCHH---
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNE----SWDNKSFD--- 238 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~----~~~~~~~~--- 238 (427)
.....++|.|..|+|||||++.+.... ..+......+.. ......+..+.......... .....+..
T Consensus 143 ~~Gq~~~I~G~sG~GKStLl~~I~~~~-----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~ 217 (422)
T TIGR02546 143 GEGQRIGIFAGAGVGKSTLLGMIARGA-----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERL 217 (422)
T ss_pred cCCCEEEEECCCCCChHHHHHHHhCCC-----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHH
Confidence 345678999999999999999998765 123344444443 33444555444432211100 00111111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEeccC
Q 042645 239 ---EKAQEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 239 ---~~~~~l~~~L--~~k~~LlVlDdv~ 261 (427)
...-.+.+++ +++++|+++|++-
T Consensus 218 ~~~~~a~~~AE~f~~~g~~Vl~~~Dslt 245 (422)
T TIGR02546 218 KAAYTATAIAEYFRDQGKRVLLMMDSLT 245 (422)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCch
Confidence 1112233333 4789999999985
No 479
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.33 E-value=0.08 Score=49.26 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCCccccchhhHH---HHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc
Q 042645 145 PLPPTVVGMQSTLD---RVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD 201 (427)
Q Consensus 145 ~~~~~~vGR~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 201 (427)
+....+||..+..+ -+++.+.++ ..+.|.|.|++|.|||+||-.+.+.+ -..-.|.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 34567899876443 345555554 45789999999999999999999998 3334443
No 480
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.31 E-value=0.15 Score=46.42 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=66.4
Q ss_pred CCccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
.+.|+|-... +++..++.. ...+.+.++|..|+|||+-++.+++... ..+.+..++.++...+...+...
T Consensus 71 ~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p-------~~~l~~~~p~~~a~~~i~~i~~~ 142 (297)
T COG2842 71 APDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNP-------NALLIEADPSYTALVLILIICAA 142 (297)
T ss_pred cccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCc-------cceeecCChhhHHHHHHHHHHHH
Confidence 4566665432 222333221 2334899999999999999999987651 23444566666666666666655
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL 263 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 263 (427)
..... ..........+...+++..-+++.|+.+..
T Consensus 143 ~~~~~----~~~~~d~~~~~~~~l~~~~~~iivDEA~~L 177 (297)
T COG2842 143 AFGAT----DGTINDLTERLMIRLRDTVRLIIVDEADRL 177 (297)
T ss_pred Hhccc----chhHHHHHHHHHHHHccCcceeeeehhhcc
Confidence 44332 223445555666677888889999998764
No 481
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.30 E-value=0.057 Score=53.02 Aligned_cols=94 Identities=11% Similarity=0.129 Sum_probs=54.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCC--cEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----CCCCCCHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDF--DFVIWEVVSRDL-QLGKIQESIAKKIGLYNE-----SWDNKSFDE 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~-----~~~~~~~~~ 239 (427)
....++|.|..|+|||||+..+.++. .....+ ..++++.+++.. ...+++..+...-.+... ..+......
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 44679999999999999999998865 221111 145666666543 456666666543222110 001111111
Q ss_pred -----HHHHHHHHhc---CCcEEEEEeccCC
Q 042645 240 -----KAQEIFKTMR---NRKIVLLLDDIWE 262 (427)
Q Consensus 240 -----~~~~l~~~L~---~k~~LlVlDdv~~ 262 (427)
..-.+-++++ ++++||++||+-.
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 1122444544 7899999999843
No 482
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.037 Score=50.44 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+..++|||++|.|||-+|+.|+...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m 190 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM 190 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc
Confidence 35689999999999999999999887
No 483
>PRK13946 shikimate kinase; Provisional
Probab=95.29 E-value=0.016 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.+.|++|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999987
No 484
>PRK04182 cytidylate kinase; Provisional
Probab=95.27 E-value=0.016 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.|.|+.|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999876
No 485
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.27 E-value=0.08 Score=53.17 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|..|.|||||.+.+....
T Consensus 29 G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 29 GERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4579999999999999999998776
No 486
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.26 E-value=0.088 Score=51.28 Aligned_cols=91 Identities=21% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCC-----CCCCCCCHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYN-----ESWDNKSFDEK 240 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~-----~~~~~~~~~~~ 240 (427)
.....++|.|..|+|||||++.+.+.. +.+..++..+++. ....+++.+....-.... ...+.......
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999887654 2334455555543 344455555432110000 00011111111
Q ss_pred -----HHHHHHHh--cCCcEEEEEeccCC
Q 042645 241 -----AQEIFKTM--RNRKIVLLLDDIWE 262 (427)
Q Consensus 241 -----~~~l~~~L--~~k~~LlVlDdv~~ 262 (427)
.-.+-+++ +++++||++||+-.
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 11233444 47999999999853
No 487
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.93 Score=41.87 Aligned_cols=67 Identities=12% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHHhh-cCCCcceeccCCChHHHHHHHHH
Q 042645 250 NRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVCGL-MDAHKSFKVECLGYEDAWRLFEE 317 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~lf~~ 317 (427)
+++-++|+||++... ....+...+-....++.+|++|.+. .+... .+-...+.+.+ +.++..+++..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999998653 3444444444434556677666554 33322 22235567766 66666666653
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.24 E-value=0.017 Score=48.99 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|.|.|+.|+||||+|+.+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998875
No 489
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.23 E-value=0.017 Score=54.65 Aligned_cols=151 Identities=21% Similarity=0.305 Sum_probs=78.3
Q ss_pred ccchhhHHHHHHHhcc-----------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCC-CC---cEEEEE---
Q 042645 151 VGMQSTLDRVWRCLTE-----------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN-DF---DFVIWE--- 206 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f---~~~~wv--- 206 (427)
.|-..+...|.+.+.. ....++.|+|.+|+||||+.+.+......... .+ ...+-+
T Consensus 374 ~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n 453 (593)
T COG2401 374 KGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN 453 (593)
T ss_pred ccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc
Confidence 4555677777777642 13468999999999999999998765521111 00 011111
Q ss_pred ----EeC----CCCCHHHHHHH-------------HHHHhCCCCCC-----CCCCCH-HHHHHHHHHHhcCCcEEEEEec
Q 042645 207 ----VVS----RDLQLGKIQES-------------IAKKIGLYNES-----WDNKSF-DEKAQEIFKTMRNRKIVLLLDD 259 (427)
Q Consensus 207 ----~~~----~~~~~~~l~~~-------------i~~~l~~~~~~-----~~~~~~-~~~~~~l~~~L~~k~~LlVlDd 259 (427)
.+. ..++-..++.. |++..++.... +...+. ..-..+|...+..++-+++.|.
T Consensus 454 t~~a~iPge~Ep~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDE 533 (593)
T COG2401 454 TVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533 (593)
T ss_pred chhhccCcccccccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhh
Confidence 011 11121233333 33333332211 111122 2233567778888989999999
Q ss_pred cCCccc-ccc--cccCCCC--CCCCcEEEEecCChhHHhhcCCCcce
Q 042645 260 IWELFD-LAQ--VGLPVPS--RASASKVVFTTREFEVCGLMDAHKSF 301 (427)
Q Consensus 260 v~~~~~-~~~--~~~~l~~--~~~gs~IivTtR~~~v~~~~~~~~~~ 301 (427)
+...-+ ... +...+.. ...|+.+++.|+..++...+.++..+
T Consensus 534 F~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 865322 111 1111111 12466777777777777666555433
No 490
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.21 E-value=0.02 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.667 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
+.|+|+|-||+||||++..++..+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALA 25 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHH
Confidence 4689999999999999999887773
No 491
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.18 E-value=0.14 Score=49.80 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHH-H--
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFD-E-- 239 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~-~-- 239 (427)
....++|.|..|+|||||+..+.+.. . .+..+...+.... ...++.......-.+... .....+.. .
T Consensus 136 ~Gq~~~I~G~sG~GKTtLl~~I~~~~-~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 136 RGQRMGIFAGSGVGKSTLLGMMARYT-E----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhcCC-C----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 45679999999999999999888654 1 2334445555432 344455544433111110 00111111 1
Q ss_pred ---HHHHHHHHh--cCCcEEEEEeccC
Q 042645 240 ---KAQEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 240 ---~~~~l~~~L--~~k~~LlVlDdv~ 261 (427)
..-.+-+++ +++++||++||+-
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dslt 237 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSLT 237 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeChH
Confidence 111223333 5899999999984
No 492
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.17 E-value=0.11 Score=52.18 Aligned_cols=134 Identities=18% Similarity=0.210 Sum_probs=68.0
Q ss_pred hHHHHHHHhccCCCeEEEEEecCCCcHHHHHHH-HHhhccCCCCCCcEEEEEEeCCCCC--HHHHHHHHHHHhCCCCCCC
Q 042645 156 TLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQ-INNSFLHTPNDFDFVIWEVVSRDLQ--LGKIQESIAKKIGLYNESW 232 (427)
Q Consensus 156 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~-v~~~~~~~~~~f~~~~wv~~~~~~~--~~~l~~~i~~~l~~~~~~~ 232 (427)
..++|++.+.++ .||.|+|..|+||||-..+ +|.+- +-+.. -|.+.++-. .-.+.+.+...++......
T Consensus 360 ~R~~ll~~ir~n--~vvvivgETGSGKTTQl~QyL~edG-----Y~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 360 CRDQLLSVIREN--QVVVIVGETGSGKTTQLAQYLYEDG-----YADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred HHHHHHHHHhhC--cEEEEEecCCCCchhhhHHHHHhcc-----cccCC-eeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 344555555443 6899999999999986554 44432 11111 233444332 3345556666665432110
Q ss_pred --------CCCCHHHH------HHHHHHHhc----CCcEEEEEeccCCccccccc-----ccCCCCCCCCcEEEEecCCh
Q 042645 233 --------DNKSFDEK------AQEIFKTMR----NRKIVLLLDDIWELFDLAQV-----GLPVPSRASASKVVFTTREF 289 (427)
Q Consensus 233 --------~~~~~~~~------~~~l~~~L~----~k~~LlVlDdv~~~~~~~~~-----~~~l~~~~~gs~IivTtR~~ 289 (427)
+..+.+.. --.|++.|. +|--.||+|+.++..--.++ ...+ .....-|+||||-..
T Consensus 432 VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm 510 (1042)
T KOG0924|consen 432 VGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATM 510 (1042)
T ss_pred cceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeeccc
Confidence 00011111 012344444 45669999999865321111 1112 223467899999764
Q ss_pred h---HHhhcCCC
Q 042645 290 E---VCGLMDAH 298 (427)
Q Consensus 290 ~---v~~~~~~~ 298 (427)
+ ++...+..
T Consensus 511 ~a~kf~nfFgn~ 522 (1042)
T KOG0924|consen 511 DAQKFSNFFGNC 522 (1042)
T ss_pred cHHHHHHHhCCC
Confidence 4 45555533
No 493
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.17 E-value=0.088 Score=51.32 Aligned_cols=94 Identities=9% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccC----------CCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC-CCCC-----C
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLH----------TPNDFDFVIWEVVSRDLQLGKIQESIAKKIG-LYNE-----S 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----------~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~-~~~~-----~ 231 (427)
...-++|.|.+|+|||||+..+.++... ..+.-..+++..+++.....+.+...+..-+ +... .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 4567999999999999999999877520 0011115567777777666666666666554 2210 0
Q ss_pred CCCCCHHHH-----HHHHHHHhc---CCcEEEEEeccC
Q 042645 232 WDNKSFDEK-----AQEIFKTMR---NRKIVLLLDDIW 261 (427)
Q Consensus 232 ~~~~~~~~~-----~~~l~~~L~---~k~~LlVlDdv~ 261 (427)
.+....... .-.+-++++ ++++||++||+-
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011111111 112344444 699999999984
No 494
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.15 E-value=0.13 Score=47.08 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=48.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
+...++++|.+|+||||++..+...+. ..-..+.+++..... ....-+......++.+.. ...+...+...+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~---~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~--~~~~~~~l~~~l~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFH---GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALTY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE--ecCCHHHHHHHHHH
Confidence 346899999999999999999877662 112345555554221 112222233333333221 22344455444433
Q ss_pred Hhc-CCcEEEEEeccCC
Q 042645 247 TMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 247 ~L~-~k~~LlVlDdv~~ 262 (427)
.-+ .+.=++++|..-.
T Consensus 149 l~~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 149 FKEEARVDYILIDTAGK 165 (270)
T ss_pred HHhcCCCCEEEEECCCC
Confidence 222 2445788888743
No 495
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.15 E-value=0.039 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+|+|.|++|+|||||+..+...+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998876
No 496
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.15 E-value=0.034 Score=52.28 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=34.6
Q ss_pred CCccccchhhHHH---HHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 147 PPTVVGMQSTLDR---VWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 147 ~~~~vGR~~~~~~---l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+||..+..+. +++.+.++ ..+.|.|.|++|.|||+||..+.+.+
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 3578998765443 45666655 36889999999999999999999988
No 497
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.14 E-value=0.04 Score=43.66 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.+.|.=|+||||+++.++..+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 44789999999999999999999877
No 498
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.022 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999998764
No 499
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.12 E-value=0.025 Score=48.68 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.|+|++|+|||||+..+.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3679999999999999999998875
No 500
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.12 E-value=0.02 Score=46.53 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|+|..|+|||||.+.++...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999987765
Done!