Query 042645
Match_columns 427
No_of_seqs 351 out of 2567
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.7E-43 3.3E-47 351.2 18.5 256 151-427 131-411 (549)
2 1vt4_I APAF-1 related killer D 100.0 1E-37 3.5E-42 320.5 16.3 248 148-427 128-397 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-36 4.6E-41 335.4 25.0 270 144-427 120-405 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.6E-35 3.3E-39 296.5 22.0 266 145-427 121-405 (591)
5 1w5s_A Origin recognition comp 99.7 3.5E-17 1.2E-21 159.1 15.7 251 146-411 20-320 (412)
6 2qen_A Walker-type ATPase; unk 99.7 4.2E-17 1.4E-21 154.8 14.6 198 146-356 10-250 (350)
7 2fna_A Conserved hypothetical 99.7 2.2E-16 7.6E-21 150.2 17.2 195 147-357 12-255 (357)
8 2qby_B CDC6 homolog 3, cell di 99.6 2.2E-14 7.6E-19 137.9 18.3 247 147-410 19-295 (384)
9 2v1u_A Cell division control p 99.6 4.2E-14 1.4E-18 136.0 19.8 244 147-409 18-300 (387)
10 2qby_A CDC6 homolog 1, cell di 99.6 1.3E-14 4.4E-19 139.5 14.7 204 146-351 18-244 (386)
11 1fnn_A CDC6P, cell division co 99.5 7.7E-14 2.6E-18 134.3 16.4 202 147-353 16-248 (389)
12 1njg_A DNA polymerase III subu 99.5 3.7E-13 1.3E-17 120.5 13.4 197 148-355 23-231 (250)
13 2chg_A Replication factor C sm 99.4 7.5E-13 2.6E-17 116.8 13.0 186 148-354 17-206 (226)
14 1sxj_B Activator 1 37 kDa subu 99.3 6.5E-12 2.2E-16 117.6 10.4 184 148-352 21-210 (323)
15 3qfl_A MLA10; coiled-coil, (CC 99.3 4.5E-12 1.5E-16 98.8 6.4 71 9-86 1-72 (115)
16 1iqp_A RFCS; clamp loader, ext 99.2 4.9E-11 1.7E-15 111.7 8.3 185 148-356 25-216 (327)
17 2chq_A Replication factor C sm 99.1 4.6E-10 1.6E-14 104.7 12.2 182 148-353 17-205 (319)
18 3te6_A Regulatory protein SIR3 99.1 8.9E-10 3E-14 101.6 13.5 168 150-320 22-212 (318)
19 1jr3_A DNA polymerase III subu 99.0 1.8E-09 6.2E-14 103.0 13.2 195 148-353 16-222 (373)
20 1hqc_A RUVB; extended AAA-ATPa 99.0 4.2E-09 1.4E-13 98.4 15.3 176 148-356 12-215 (324)
21 1jbk_A CLPB protein; beta barr 98.9 1.4E-09 4.7E-14 93.2 6.1 46 148-193 22-67 (195)
22 1sxj_D Activator 1 41 kDa subu 98.9 5.5E-09 1.9E-13 98.9 10.2 194 148-352 37-235 (353)
23 3bos_A Putative DNA replicatio 98.9 1.1E-09 3.7E-14 97.7 5.0 173 148-353 28-218 (242)
24 2z4s_A Chromosomal replication 98.9 2.8E-08 9.6E-13 96.7 14.2 182 149-351 106-305 (440)
25 3h4m_A Proteasome-activating n 98.8 1.9E-08 6.5E-13 92.2 12.2 177 148-351 17-230 (285)
26 1sxj_A Activator 1 95 kDa subu 98.8 2E-08 7E-13 99.9 12.9 186 148-351 39-252 (516)
27 3pvs_A Replication-associated 98.8 8.2E-08 2.8E-12 93.3 15.4 177 148-354 26-217 (447)
28 1sxj_E Activator 1 40 kDa subu 98.8 2.4E-08 8.3E-13 94.5 11.0 195 148-352 14-237 (354)
29 3pfi_A Holliday junction ATP-d 98.8 1.3E-07 4.3E-12 88.9 14.7 172 148-353 29-228 (338)
30 1d2n_A N-ethylmaleimide-sensit 98.7 7.5E-07 2.6E-11 80.9 18.4 192 148-374 33-264 (272)
31 3uk6_A RUVB-like 2; hexameric 98.7 7E-08 2.4E-12 91.8 11.0 198 147-352 43-303 (368)
32 1xwi_A SKD1 protein; VPS4B, AA 98.7 1.5E-06 5.2E-11 80.9 18.9 179 148-353 12-224 (322)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.7E-07 9.2E-12 83.2 13.4 180 148-352 6-222 (262)
34 3syl_A Protein CBBX; photosynt 98.7 1E-07 3.4E-12 88.4 10.7 151 149-320 32-218 (309)
35 1a5t_A Delta prime, HOLB; zinc 98.6 6.9E-07 2.4E-11 83.7 15.5 169 153-351 7-204 (334)
36 3eie_A Vacuolar protein sortin 98.6 5.6E-07 1.9E-11 83.9 13.8 176 148-352 18-228 (322)
37 3d8b_A Fidgetin-like protein 1 98.6 9.1E-07 3.1E-11 83.7 15.1 179 148-353 84-296 (357)
38 1sxj_C Activator 1 40 kDa subu 98.6 2.7E-07 9.3E-12 86.7 11.5 176 148-351 25-211 (340)
39 3vfd_A Spastin; ATPase, microt 98.6 1.9E-06 6.4E-11 82.6 17.4 180 148-353 115-327 (389)
40 2qp9_X Vacuolar protein sortin 98.6 1.2E-06 4E-11 82.8 15.5 177 148-352 51-261 (355)
41 3u61_B DNA polymerase accessor 98.6 4.9E-07 1.7E-11 84.4 12.2 181 148-355 26-219 (324)
42 1l8q_A Chromosomal replication 98.5 4.4E-07 1.5E-11 84.7 11.8 177 148-350 11-206 (324)
43 2zan_A Vacuolar protein sortin 98.5 2.8E-06 9.6E-11 82.7 17.1 180 148-352 134-345 (444)
44 3b9p_A CG5977-PA, isoform A; A 98.5 2.9E-06 9.8E-11 78.0 15.3 177 148-353 21-234 (297)
45 2p65_A Hypothetical protein PF 98.5 1.8E-07 6.1E-12 79.5 6.4 46 148-193 22-67 (187)
46 3cf0_A Transitional endoplasmi 98.4 5.7E-06 1.9E-10 76.2 15.3 173 148-347 15-223 (301)
47 2gno_A DNA polymerase III, gam 98.4 2E-06 6.7E-11 79.2 11.5 147 152-319 1-152 (305)
48 4b4t_J 26S protease regulatory 98.4 2.2E-05 7.4E-10 74.3 17.9 171 148-346 148-355 (405)
49 3pxg_A Negative regulator of g 98.3 3.3E-06 1.1E-10 82.8 12.7 149 148-320 180-339 (468)
50 1in4_A RUVB, holliday junction 98.3 1.8E-05 6.3E-10 73.9 15.7 217 148-398 25-277 (334)
51 4b4t_L 26S protease subunit RP 98.3 2.7E-05 9.4E-10 74.7 16.8 171 148-346 181-388 (437)
52 1qvr_A CLPB protein; coiled co 98.3 2.4E-06 8.2E-11 90.2 10.3 154 148-319 170-345 (854)
53 2r62_A Cell division protease 98.3 3.2E-06 1.1E-10 76.5 9.7 172 148-346 11-219 (268)
54 3hu3_A Transitional endoplasmi 98.3 1.5E-05 5.2E-10 78.2 14.9 177 148-351 204-414 (489)
55 3n70_A Transport activator; si 98.2 1.4E-06 4.8E-11 71.0 5.9 45 149-193 2-48 (145)
56 1lv7_A FTSH; alpha/beta domain 98.2 3.1E-05 1E-09 69.5 15.1 177 148-351 12-224 (257)
57 3pxi_A Negative regulator of g 98.2 1.4E-05 4.9E-10 83.2 14.3 151 148-320 180-339 (758)
58 4b4t_H 26S protease regulatory 98.2 4E-05 1.4E-09 73.5 15.8 170 149-345 210-415 (467)
59 1ofh_A ATP-dependent HSL prote 98.2 1.1E-05 3.8E-10 74.3 11.8 46 148-193 15-74 (310)
60 4b4t_I 26S protease regulatory 98.2 3.9E-05 1.3E-09 72.8 15.0 170 149-346 183-389 (437)
61 2ce7_A Cell division protein F 98.1 4.7E-05 1.6E-09 74.2 14.4 171 148-345 16-221 (476)
62 4b4t_K 26S protease regulatory 98.1 3.5E-05 1.2E-09 73.8 12.8 171 148-345 172-379 (428)
63 3ec2_A DNA replication protein 98.1 2.7E-06 9.2E-11 72.0 4.4 116 153-288 19-142 (180)
64 1r6b_X CLPA protein; AAA+, N-t 98.0 3.4E-05 1.2E-09 80.5 13.0 154 148-319 186-362 (758)
65 4fcw_A Chaperone protein CLPB; 98.0 2.1E-05 7.2E-10 72.6 10.2 46 148-193 17-71 (311)
66 4b4t_M 26S protease regulatory 98.0 1.6E-05 5.6E-10 76.2 8.9 170 148-345 181-387 (434)
67 2c9o_A RUVB-like 1; hexameric 98.0 2.6E-05 8.8E-10 76.2 10.4 46 148-193 37-87 (456)
68 2bjv_A PSP operon transcriptio 98.0 1.9E-05 6.3E-10 71.3 8.6 46 148-193 6-53 (265)
69 1ojl_A Transcriptional regulat 97.9 4.2E-05 1.4E-09 70.4 9.2 46 148-193 2-49 (304)
70 3m6a_A ATP-dependent protease 97.9 0.00038 1.3E-08 69.3 16.8 154 148-319 81-266 (543)
71 2w58_A DNAI, primosome compone 97.9 3.2E-05 1.1E-09 66.6 7.8 112 156-288 37-158 (202)
72 3cf2_A TER ATPase, transitiona 97.8 5.2E-05 1.8E-09 78.2 9.5 172 149-347 205-409 (806)
73 3t15_A Ribulose bisphosphate c 97.8 5.8E-05 2E-09 69.1 8.1 25 169-193 36-60 (293)
74 2kjq_A DNAA-related protein; s 97.8 1.6E-05 5.4E-10 64.9 3.8 33 161-193 28-60 (149)
75 3pxi_A Negative regulator of g 97.7 1.7E-05 5.8E-10 82.7 4.5 148 148-319 491-675 (758)
76 2dhr_A FTSH; AAA+ protein, hex 97.6 0.0021 7E-08 63.0 16.7 167 148-345 31-236 (499)
77 1ixz_A ATP-dependent metallopr 97.5 0.0014 4.8E-08 58.3 13.8 170 148-345 16-221 (254)
78 1iy2_A ATP-dependent metallopr 97.5 0.0032 1.1E-07 56.9 16.3 170 148-345 40-245 (278)
79 1ypw_A Transitional endoplasmi 97.5 0.00059 2E-08 71.2 12.0 170 149-345 205-407 (806)
80 2cvh_A DNA repair and recombin 97.5 0.00043 1.5E-08 60.1 9.2 89 168-263 19-117 (220)
81 2x8a_A Nuclear valosin-contain 97.5 0.0027 9.3E-08 57.2 14.6 149 148-320 10-192 (274)
82 2vhj_A Ntpase P4, P4; non- hyd 97.4 8.5E-05 2.9E-09 67.9 4.1 71 168-263 122-194 (331)
83 3hr8_A Protein RECA; alpha and 97.4 0.0006 2E-08 63.7 9.1 88 168-263 60-151 (356)
84 1n0w_A DNA repair protein RAD5 97.3 0.0011 3.6E-08 58.5 10.0 95 168-263 23-131 (243)
85 1qvr_A CLPB protein; coiled co 97.3 0.00035 1.2E-08 73.6 7.5 45 149-193 559-612 (854)
86 1jr3_D DNA polymerase III, del 97.3 0.0013 4.3E-08 61.6 10.2 164 160-351 9-184 (343)
87 1v5w_A DMC1, meiotic recombina 97.3 0.0018 6.2E-08 60.5 11.2 94 168-262 121-230 (343)
88 2z43_A DNA repair and recombin 97.2 0.0018 6.1E-08 60.0 11.0 94 168-262 106-214 (324)
89 1g5t_A COB(I)alamin adenosyltr 97.2 0.00012 4.2E-09 61.9 2.7 115 169-290 28-164 (196)
90 1r6b_X CLPA protein; AAA+, N-t 97.2 0.00034 1.2E-08 72.8 6.6 46 148-193 458-512 (758)
91 3io5_A Recombination and repai 97.2 0.0021 7.3E-08 58.4 10.7 88 170-263 29-123 (333)
92 1xp8_A RECA protein, recombina 97.2 0.0014 4.7E-08 61.6 9.3 88 168-263 73-164 (366)
93 3co5_A Putative two-component 97.2 0.00016 5.4E-09 58.5 2.5 45 149-193 5-51 (143)
94 2b8t_A Thymidine kinase; deoxy 97.1 0.00013 4.6E-09 63.4 1.8 113 168-289 11-126 (223)
95 2zr9_A Protein RECA, recombina 97.1 0.0016 5.3E-08 61.0 9.2 88 168-263 60-151 (349)
96 2i1q_A DNA repair and recombin 97.0 0.0027 9.2E-08 58.7 9.8 94 168-262 97-215 (322)
97 2qgz_A Helicase loader, putati 97.0 0.00098 3.4E-08 61.3 6.2 40 154-193 134-176 (308)
98 1u94_A RECA protein, recombina 97.0 0.0025 8.5E-08 59.7 8.9 87 168-262 62-152 (356)
99 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.003 1E-07 55.1 8.0 116 168-289 22-168 (235)
100 1rz3_A Hypothetical protein rb 96.8 0.0014 4.7E-08 56.2 5.4 42 152-193 2-46 (201)
101 3cf2_A TER ATPase, transitiona 96.8 0.0021 7.3E-08 66.3 7.7 170 148-344 477-682 (806)
102 2r44_A Uncharacterized protein 96.8 0.00091 3.1E-08 62.2 4.4 44 148-193 27-70 (331)
103 3dm5_A SRP54, signal recogniti 96.7 0.007 2.4E-07 58.0 10.2 26 168-193 99-124 (443)
104 3lda_A DNA repair protein RAD5 96.7 0.012 4E-07 56.0 11.5 94 168-262 177-284 (400)
105 2orw_A Thymidine kinase; TMTK, 96.7 7.7E-05 2.6E-09 63.2 -3.3 24 170-193 4-27 (184)
106 3bh0_A DNAB-like replicative h 96.7 0.0079 2.7E-07 55.4 9.9 51 168-223 67-117 (315)
107 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0015 5.1E-08 64.1 4.8 44 148-193 22-65 (500)
108 4a74_A DNA repair and recombin 96.6 0.0092 3.1E-07 51.9 9.4 59 168-227 24-85 (231)
109 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6.2E-08 55.7 4.7 39 155-193 6-46 (208)
110 1g8p_A Magnesium-chelatase 38 96.5 0.0011 3.6E-08 62.1 3.0 46 148-193 24-69 (350)
111 1pzn_A RAD51, DNA repair and r 96.5 0.0071 2.4E-07 56.5 8.5 95 168-263 130-243 (349)
112 2px0_A Flagellar biosynthesis 96.5 0.0086 3E-07 54.5 8.8 87 168-260 104-191 (296)
113 1qhx_A CPT, protein (chloramph 96.5 0.0015 5.2E-08 54.5 3.5 24 170-193 4-27 (178)
114 3ice_A Transcription terminati 96.5 0.014 4.7E-07 54.7 10.0 53 159-212 163-216 (422)
115 2ck3_D ATP synthase subunit be 96.5 0.026 8.8E-07 54.3 12.1 64 159-224 142-207 (482)
116 3kl4_A SRP54, signal recogniti 96.5 0.012 4.1E-07 56.3 9.9 26 168-193 96-121 (433)
117 3sr0_A Adenylate kinase; phosp 96.5 0.0072 2.5E-07 51.8 7.6 77 171-262 2-85 (206)
118 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.5E-08 53.9 3.2 24 170-193 2-25 (173)
119 3hws_A ATP-dependent CLP prote 96.4 0.0029 9.9E-08 59.6 5.2 45 149-193 16-75 (363)
120 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 53.8 3.2 23 170-193 2-24 (179)
121 1vma_A Cell division protein F 96.4 0.008 2.7E-07 54.9 7.8 90 168-261 103-196 (306)
122 1um8_A ATP-dependent CLP prote 96.3 0.0035 1.2E-07 59.3 5.4 46 148-193 21-96 (376)
123 1zp6_A Hypothetical protein AT 96.3 0.0026 9E-08 53.7 4.0 26 168-193 8-33 (191)
124 1ly1_A Polynucleotide kinase; 96.3 0.0026 8.8E-08 53.1 3.6 22 170-191 3-24 (181)
125 3vaa_A Shikimate kinase, SK; s 96.3 0.0024 8.4E-08 54.5 3.5 26 168-193 24-49 (199)
126 3e70_C DPA, signal recognition 96.2 0.025 8.4E-07 52.2 10.4 27 167-193 127-153 (328)
127 3uie_A Adenylyl-sulfate kinase 96.2 0.003 1E-07 54.0 3.9 28 166-193 22-49 (200)
128 2hf9_A Probable hydrogenase ni 96.2 0.0046 1.6E-07 53.7 5.1 40 154-193 23-62 (226)
129 3trf_A Shikimate kinase, SK; a 96.2 0.0025 8.4E-08 53.6 3.2 25 169-193 5-29 (185)
130 1kag_A SKI, shikimate kinase I 96.2 0.0023 7.7E-08 53.2 3.0 24 170-193 5-28 (173)
131 2yvu_A Probable adenylyl-sulfa 96.2 0.0029 1E-07 53.3 3.7 26 168-193 12-37 (186)
132 2xxa_A Signal recognition part 96.2 0.033 1.1E-06 53.5 11.5 26 168-193 99-124 (433)
133 1nks_A Adenylate kinase; therm 96.2 0.0027 9.3E-08 53.6 3.5 24 170-193 2-25 (194)
134 3cmu_A Protein RECA, recombina 96.2 0.012 3.9E-07 66.4 9.2 86 168-261 1426-1515(2050)
135 2ffh_A Protein (FFH); SRP54, s 96.2 0.018 6.3E-07 55.0 9.5 25 169-193 98-122 (425)
136 4a1f_A DNAB helicase, replicat 96.2 0.048 1.6E-06 50.4 12.0 51 168-223 45-95 (338)
137 2dr3_A UPF0273 protein PH0284; 96.2 0.009 3.1E-07 52.5 7.0 40 168-210 22-61 (247)
138 2rhm_A Putative kinase; P-loop 96.2 0.0032 1.1E-07 53.2 3.9 25 169-193 5-29 (193)
139 1sky_E F1-ATPase, F1-ATP synth 96.2 0.015 5.2E-07 56.0 8.8 99 161-261 142-255 (473)
140 1kgd_A CASK, peripheral plasma 96.2 0.0032 1.1E-07 52.8 3.6 25 169-193 5-29 (180)
141 4eun_A Thermoresistant glucoki 96.1 0.0032 1.1E-07 53.8 3.5 27 167-193 27-53 (200)
142 1cr0_A DNA primase/helicase; R 96.1 0.027 9.2E-07 51.2 9.9 26 168-193 34-59 (296)
143 1ex7_A Guanylate kinase; subst 96.1 0.0029 1E-07 53.3 3.1 24 170-193 2-25 (186)
144 1fx0_B ATP synthase beta chain 96.1 0.025 8.6E-07 54.6 9.8 99 161-261 156-276 (498)
145 3iij_A Coilin-interacting nucl 96.1 0.0029 1E-07 52.9 3.1 25 169-193 11-35 (180)
146 3t61_A Gluconokinase; PSI-biol 96.1 0.0026 8.9E-08 54.4 2.8 25 169-193 18-42 (202)
147 3jvv_A Twitching mobility prot 96.1 0.0025 8.6E-08 59.6 2.8 114 167-293 121-235 (356)
148 1kht_A Adenylate kinase; phosp 96.1 0.0032 1.1E-07 53.1 3.2 24 170-193 4-27 (192)
149 3umf_A Adenylate kinase; rossm 96.1 0.0037 1.3E-07 54.1 3.6 26 168-193 28-53 (217)
150 3tau_A Guanylate kinase, GMP k 96.0 0.004 1.4E-07 53.6 3.8 26 168-193 7-32 (208)
151 1g41_A Heat shock protein HSLU 96.0 0.005 1.7E-07 59.1 4.8 46 148-193 15-74 (444)
152 2wsm_A Hydrogenase expression/ 96.0 0.0053 1.8E-07 53.1 4.6 41 153-193 14-54 (221)
153 1odf_A YGR205W, hypothetical 3 96.0 0.0061 2.1E-07 55.3 5.1 27 167-193 29-55 (290)
154 2ga8_A Hypothetical 39.9 kDa p 96.0 0.007 2.4E-07 56.1 5.3 43 151-193 2-48 (359)
155 2c95_A Adenylate kinase 1; tra 96.0 0.0041 1.4E-07 52.6 3.6 25 169-193 9-33 (196)
156 2qor_A Guanylate kinase; phosp 96.0 0.0036 1.2E-07 53.6 3.2 25 169-193 12-36 (204)
157 1tev_A UMP-CMP kinase; ploop, 96.0 0.0041 1.4E-07 52.6 3.5 25 169-193 3-27 (196)
158 1knq_A Gluconate kinase; ALFA/ 96.0 0.0045 1.6E-07 51.4 3.7 25 169-193 8-32 (175)
159 1via_A Shikimate kinase; struc 96.0 0.0034 1.1E-07 52.3 2.8 23 171-193 6-28 (175)
160 1gvn_B Zeta; postsegregational 96.0 0.0067 2.3E-07 55.0 5.0 26 168-193 32-57 (287)
161 2ze6_A Isopentenyl transferase 95.9 0.0041 1.4E-07 55.3 3.4 24 170-193 2-25 (253)
162 3tr0_A Guanylate kinase, GMP k 95.9 0.0046 1.6E-07 52.8 3.6 25 169-193 7-31 (205)
163 2iyv_A Shikimate kinase, SK; t 95.9 0.0033 1.1E-07 52.7 2.7 24 170-193 3-26 (184)
164 1tue_A Replication protein E1; 95.9 0.006 2E-07 51.8 4.1 37 157-193 45-82 (212)
165 1zuh_A Shikimate kinase; alpha 95.9 0.0041 1.4E-07 51.3 3.2 26 168-193 6-31 (168)
166 2jaq_A Deoxyguanosine kinase; 95.9 0.0042 1.4E-07 53.0 3.2 23 171-193 2-24 (205)
167 1j8m_F SRP54, signal recogniti 95.9 0.02 7E-07 52.0 7.9 90 169-261 98-190 (297)
168 1ukz_A Uridylate kinase; trans 95.9 0.0054 1.9E-07 52.3 3.9 26 168-193 14-39 (203)
169 2plr_A DTMP kinase, probable t 95.9 0.0049 1.7E-07 52.9 3.6 24 170-193 5-28 (213)
170 1y63_A LMAJ004144AAA protein; 95.9 0.0053 1.8E-07 51.6 3.7 24 169-192 10-33 (184)
171 2bwj_A Adenylate kinase 5; pho 95.9 0.0047 1.6E-07 52.4 3.5 25 169-193 12-36 (199)
172 2j41_A Guanylate kinase; GMP, 95.9 0.0053 1.8E-07 52.4 3.8 25 169-193 6-30 (207)
173 4gp7_A Metallophosphoesterase; 95.9 0.0046 1.6E-07 51.3 3.2 23 168-190 8-30 (171)
174 3a00_A Guanylate kinase, GMP k 95.8 0.0044 1.5E-07 52.2 3.0 24 170-193 2-25 (186)
175 3cm0_A Adenylate kinase; ATP-b 95.8 0.005 1.7E-07 51.7 3.4 24 170-193 5-28 (186)
176 2bdt_A BH3686; alpha-beta prot 95.8 0.0053 1.8E-07 51.7 3.5 23 170-192 3-25 (189)
177 3tlx_A Adenylate kinase 2; str 95.8 0.0086 2.9E-07 52.8 5.0 40 154-193 12-53 (243)
178 1ye8_A Protein THEP1, hypothet 95.8 0.0051 1.8E-07 51.5 3.3 23 171-193 2-24 (178)
179 1e6c_A Shikimate kinase; phosp 95.8 0.0042 1.4E-07 51.4 2.8 24 170-193 3-26 (173)
180 3asz_A Uridine kinase; cytidin 95.8 0.0061 2.1E-07 52.4 3.9 26 168-193 5-30 (211)
181 2qt1_A Nicotinamide riboside k 95.8 0.0068 2.3E-07 51.9 4.1 26 168-193 20-45 (207)
182 3l0o_A Transcription terminati 95.8 0.06 2E-06 50.3 10.4 53 158-211 163-216 (427)
183 1qf9_A UMP/CMP kinase, protein 95.8 0.0057 2E-07 51.5 3.5 25 169-193 6-30 (194)
184 2vli_A Antibiotic resistance p 95.8 0.0038 1.3E-07 52.3 2.3 25 169-193 5-29 (183)
185 1cke_A CK, MSSA, protein (cyti 95.7 0.0052 1.8E-07 53.4 3.2 24 170-193 6-29 (227)
186 1uf9_A TT1252 protein; P-loop, 95.7 0.0072 2.5E-07 51.4 4.1 25 168-192 7-31 (203)
187 2bbw_A Adenylate kinase 4, AK4 95.7 0.0058 2E-07 54.0 3.5 25 169-193 27-51 (246)
188 2wwf_A Thymidilate kinase, put 95.7 0.0062 2.1E-07 52.3 3.6 25 169-193 10-34 (212)
189 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0067 2.3E-07 54.2 3.8 25 169-193 4-28 (260)
190 2if2_A Dephospho-COA kinase; a 95.7 0.0062 2.1E-07 52.0 3.4 22 170-191 2-23 (204)
191 3ney_A 55 kDa erythrocyte memb 95.7 0.0069 2.4E-07 51.4 3.6 26 168-193 18-43 (197)
192 2cdn_A Adenylate kinase; phosp 95.7 0.0059 2E-07 52.1 3.2 25 169-193 20-44 (201)
193 2p5t_B PEZT; postsegregational 95.7 0.0081 2.8E-07 53.3 4.2 26 168-193 31-56 (253)
194 1nn5_A Similar to deoxythymidy 95.7 0.0067 2.3E-07 52.1 3.6 25 169-193 9-33 (215)
195 2pt5_A Shikimate kinase, SK; a 95.7 0.0062 2.1E-07 50.1 3.2 23 171-193 2-24 (168)
196 2pbr_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 51.4 3.2 23 171-193 2-24 (195)
197 1zd8_A GTP:AMP phosphotransfer 95.6 0.0069 2.4E-07 52.8 3.6 25 169-193 7-31 (227)
198 1ls1_A Signal recognition part 95.6 0.032 1.1E-06 50.7 8.1 88 169-260 98-189 (295)
199 1lvg_A Guanylate kinase, GMP k 95.6 0.0056 1.9E-07 52.2 2.9 24 170-193 5-28 (198)
200 2z0h_A DTMP kinase, thymidylat 95.6 0.013 4.4E-07 49.5 5.2 23 171-193 2-24 (197)
201 3tqc_A Pantothenate kinase; bi 95.6 0.012 4E-07 54.2 5.1 43 151-193 70-116 (321)
202 1uj2_A Uridine-cytidine kinase 95.6 0.0076 2.6E-07 53.5 3.8 26 168-193 21-46 (252)
203 2v54_A DTMP kinase, thymidylat 95.6 0.0078 2.7E-07 51.3 3.7 25 169-193 4-28 (204)
204 1jjv_A Dephospho-COA kinase; P 95.6 0.0074 2.5E-07 51.6 3.5 22 170-191 3-24 (206)
205 3fb4_A Adenylate kinase; psych 95.6 0.0068 2.3E-07 52.3 3.2 23 171-193 2-24 (216)
206 1aky_A Adenylate kinase; ATP:A 95.5 0.0075 2.6E-07 52.2 3.5 25 169-193 4-28 (220)
207 1q57_A DNA primase/helicase; d 95.5 0.048 1.6E-06 53.7 9.6 51 168-222 241-291 (503)
208 3dl0_A Adenylate kinase; phosp 95.5 0.0075 2.6E-07 52.0 3.4 23 171-193 2-24 (216)
209 2q6t_A DNAB replication FORK h 95.5 0.045 1.5E-06 52.9 9.2 52 168-223 199-250 (444)
210 3fwy_A Light-independent proto 95.5 0.0082 2.8E-07 55.1 3.7 41 167-210 46-86 (314)
211 1zak_A Adenylate kinase; ATP:A 95.5 0.0077 2.6E-07 52.2 3.3 25 169-193 5-29 (222)
212 1xjc_A MOBB protein homolog; s 95.5 0.0085 2.9E-07 49.5 3.3 26 168-193 3-28 (169)
213 2j37_W Signal recognition part 95.5 0.088 3E-06 51.5 11.0 26 168-193 100-125 (504)
214 1gtv_A TMK, thymidylate kinase 95.5 0.0047 1.6E-07 53.2 1.8 23 171-193 2-24 (214)
215 1znw_A Guanylate kinase, GMP k 95.4 0.0092 3.1E-07 51.2 3.5 26 168-193 19-44 (207)
216 1htw_A HI0065; nucleotide-bind 95.4 0.011 3.8E-07 48.3 3.8 27 167-193 31-57 (158)
217 2jeo_A Uridine-cytidine kinase 95.4 0.011 3.6E-07 52.3 3.9 26 168-193 24-49 (245)
218 4e22_A Cytidylate kinase; P-lo 95.4 0.01 3.4E-07 52.7 3.8 26 168-193 26-51 (252)
219 3aez_A Pantothenate kinase; tr 95.4 0.011 3.6E-07 54.4 3.9 26 168-193 89-114 (312)
220 3k1j_A LON protease, ATP-depen 95.4 0.026 8.9E-07 56.9 7.1 43 149-193 42-84 (604)
221 1z6g_A Guanylate kinase; struc 95.4 0.0086 2.9E-07 51.9 3.2 26 168-193 22-47 (218)
222 1m7g_A Adenylylsulfate kinase; 95.3 0.011 3.8E-07 50.8 3.7 27 167-193 23-49 (211)
223 2grj_A Dephospho-COA kinase; T 95.3 0.01 3.5E-07 50.3 3.4 26 168-193 11-36 (192)
224 1s96_A Guanylate kinase, GMP k 95.3 0.011 3.7E-07 51.3 3.6 26 168-193 15-40 (219)
225 3cmu_A Protein RECA, recombina 95.3 0.046 1.6E-06 61.7 9.2 88 168-263 382-473 (2050)
226 2r6a_A DNAB helicase, replicat 95.3 0.035 1.2E-06 53.9 7.5 50 168-221 202-251 (454)
227 1rj9_A FTSY, signal recognitio 95.2 0.012 4E-07 53.8 3.7 26 168-193 101-126 (304)
228 2pez_A Bifunctional 3'-phospho 95.2 0.013 4.3E-07 48.9 3.6 25 169-193 5-29 (179)
229 3bgw_A DNAB-like replicative h 95.2 0.059 2E-06 52.0 8.6 50 168-222 196-245 (444)
230 3upu_A ATP-dependent DNA helic 95.1 0.021 7.2E-07 55.5 5.6 40 153-193 30-69 (459)
231 3p32_A Probable GTPase RV1496/ 95.1 0.024 8.1E-07 53.1 5.6 37 157-193 65-103 (355)
232 3be4_A Adenylate kinase; malar 95.1 0.012 4.1E-07 50.9 3.3 24 170-193 6-29 (217)
233 1e4v_A Adenylate kinase; trans 95.1 0.012 4.1E-07 50.7 3.3 23 171-193 2-24 (214)
234 3cmw_A Protein RECA, recombina 95.1 0.037 1.3E-06 61.5 7.8 88 168-263 382-473 (1706)
235 1zu4_A FTSY; GTPase, signal re 95.1 0.028 9.6E-07 51.7 6.0 26 168-193 104-129 (320)
236 3end_A Light-independent proto 95.1 0.02 7E-07 52.3 5.0 42 166-210 38-79 (307)
237 2xb4_A Adenylate kinase; ATP-b 95.1 0.012 4.1E-07 51.1 3.2 23 171-193 2-24 (223)
238 2ehv_A Hypothetical protein PH 95.1 0.013 4.5E-07 51.6 3.5 24 168-191 29-52 (251)
239 4eaq_A DTMP kinase, thymidylat 95.1 0.026 9E-07 49.2 5.4 26 168-193 25-50 (229)
240 2i3b_A HCR-ntpase, human cance 95.1 0.011 3.9E-07 49.8 2.9 24 170-193 2-25 (189)
241 1ak2_A Adenylate kinase isoenz 95.0 0.014 4.9E-07 51.0 3.5 24 170-193 17-40 (233)
242 1vht_A Dephospho-COA kinase; s 95.0 0.016 5.5E-07 50.0 3.8 23 169-191 4-26 (218)
243 2yhs_A FTSY, cell division pro 95.0 0.051 1.8E-06 52.7 7.5 26 168-193 292-317 (503)
244 3r20_A Cytidylate kinase; stru 95.0 0.014 4.7E-07 51.0 3.2 25 169-193 9-33 (233)
245 1np6_A Molybdopterin-guanine d 95.0 0.015 5.2E-07 48.3 3.3 25 169-193 6-30 (174)
246 3ake_A Cytidylate kinase; CMP 94.9 0.014 4.8E-07 49.8 3.2 24 170-193 3-26 (208)
247 3cmw_A Protein RECA, recombina 94.9 0.043 1.5E-06 61.1 7.7 87 168-262 1430-1520(1706)
248 3f9v_A Minichromosome maintena 94.9 0.0091 3.1E-07 60.0 2.3 46 148-193 295-351 (595)
249 3d3q_A TRNA delta(2)-isopenten 94.9 0.015 5.2E-07 53.6 3.5 24 170-193 8-31 (340)
250 2f6r_A COA synthase, bifunctio 94.9 0.018 6E-07 52.0 3.9 22 169-190 75-96 (281)
251 3nwj_A ATSK2; P loop, shikimat 94.9 0.013 4.6E-07 51.8 3.0 25 169-193 48-72 (250)
252 2f1r_A Molybdopterin-guanine d 94.9 0.01 3.5E-07 49.2 2.1 24 170-193 3-26 (171)
253 1sq5_A Pantothenate kinase; P- 94.9 0.018 6.2E-07 52.7 4.0 26 168-193 79-104 (308)
254 3b9q_A Chloroplast SRP recepto 94.9 0.017 5.9E-07 52.7 3.8 25 169-193 100-124 (302)
255 3lnc_A Guanylate kinase, GMP k 94.9 0.01 3.6E-07 51.8 2.3 25 169-193 27-52 (231)
256 3tif_A Uncharacterized ABC tra 94.9 0.015 5.3E-07 50.9 3.3 26 168-193 30-55 (235)
257 3crm_A TRNA delta(2)-isopenten 94.8 0.016 5.6E-07 53.1 3.5 24 170-193 6-29 (323)
258 2qe7_A ATP synthase subunit al 94.8 0.11 3.7E-06 50.3 9.3 97 160-261 152-264 (502)
259 2onk_A Molybdate/tungstate ABC 94.8 0.017 5.7E-07 50.8 3.5 26 167-193 23-48 (240)
260 2pcj_A ABC transporter, lipopr 94.8 0.016 5.5E-07 50.4 3.3 26 168-193 29-54 (224)
261 3a8t_A Adenylate isopentenyltr 94.8 0.019 6.6E-07 52.8 3.8 25 169-193 40-64 (339)
262 3exa_A TRNA delta(2)-isopenten 94.8 0.02 6.8E-07 52.1 3.9 25 169-193 3-27 (322)
263 4edh_A DTMP kinase, thymidylat 94.7 0.049 1.7E-06 46.9 6.2 25 169-193 6-30 (213)
264 3vr4_D V-type sodium ATPase su 94.7 0.035 1.2E-06 53.0 5.5 94 168-261 150-258 (465)
265 2v3c_C SRP54, signal recogniti 94.7 0.012 4E-07 56.6 2.3 25 169-193 99-123 (432)
266 2r9v_A ATP synthase subunit al 94.7 0.095 3.3E-06 50.7 8.5 97 160-261 165-277 (515)
267 2cbz_A Multidrug resistance-as 94.7 0.018 6.3E-07 50.5 3.3 26 168-193 30-55 (237)
268 3lv8_A DTMP kinase, thymidylat 94.6 0.044 1.5E-06 47.9 5.7 25 169-193 27-51 (236)
269 3zvl_A Bifunctional polynucleo 94.6 0.019 6.5E-07 55.0 3.6 27 167-193 256-282 (416)
270 1b0u_A Histidine permease; ABC 94.6 0.02 6.8E-07 51.1 3.3 26 168-193 31-56 (262)
271 2eyu_A Twitching motility prot 94.6 0.033 1.1E-06 49.6 4.8 27 167-193 23-49 (261)
272 3iqw_A Tail-anchored protein t 94.6 0.048 1.6E-06 50.4 6.0 44 164-210 11-54 (334)
273 4tmk_A Protein (thymidylate ki 94.5 0.053 1.8E-06 46.6 5.8 24 170-193 4-27 (213)
274 3io3_A DEHA2D07832P; chaperone 94.5 0.04 1.4E-06 51.2 5.4 30 164-193 13-42 (348)
275 2og2_A Putative signal recogni 94.5 0.023 7.8E-07 53.1 3.7 25 169-193 157-181 (359)
276 3gqb_B V-type ATP synthase bet 94.5 0.027 9.4E-07 53.8 4.3 94 168-261 146-261 (464)
277 3b85_A Phosphate starvation-in 94.5 0.015 5E-07 50.0 2.2 24 169-192 22-45 (208)
278 3foz_A TRNA delta(2)-isopenten 94.5 0.024 8.1E-07 51.5 3.7 25 169-193 10-34 (316)
279 1ltq_A Polynucleotide kinase; 94.5 0.022 7.4E-07 51.9 3.5 24 170-193 3-26 (301)
280 1oix_A RAS-related protein RAB 94.5 0.023 7.9E-07 47.8 3.4 24 170-193 30-53 (191)
281 1mv5_A LMRA, multidrug resista 94.5 0.023 7.9E-07 50.1 3.5 26 168-193 27-52 (243)
282 2olj_A Amino acid ABC transpor 94.5 0.022 7.5E-07 50.8 3.3 26 168-193 49-74 (263)
283 3gfo_A Cobalt import ATP-bindi 94.4 0.019 6.5E-07 51.6 3.0 26 168-193 33-58 (275)
284 1ji0_A ABC transporter; ATP bi 94.4 0.022 7.4E-07 50.1 3.2 26 168-193 31-56 (240)
285 1sgw_A Putative ABC transporte 94.4 0.019 6.4E-07 49.5 2.7 26 168-193 34-59 (214)
286 2ocp_A DGK, deoxyguanosine kin 94.4 0.028 9.4E-07 49.4 3.9 25 169-193 2-26 (241)
287 2zu0_C Probable ATP-dependent 94.4 0.025 8.7E-07 50.6 3.7 25 168-192 45-69 (267)
288 3oaa_A ATP synthase subunit al 94.4 0.2 7E-06 48.3 10.0 98 160-261 152-264 (513)
289 2d2e_A SUFC protein; ABC-ATPas 94.4 0.024 8.3E-07 50.1 3.5 25 168-192 28-52 (250)
290 4gzl_A RAS-related C3 botulinu 94.4 0.027 9.2E-07 47.9 3.7 39 155-193 16-54 (204)
291 1g8f_A Sulfate adenylyltransfe 94.4 0.039 1.3E-06 54.0 5.2 45 149-193 373-419 (511)
292 2v9p_A Replication protein E1; 94.4 0.026 8.8E-07 51.4 3.6 27 167-193 124-150 (305)
293 1vpl_A ABC transporter, ATP-bi 94.4 0.024 8.1E-07 50.4 3.3 26 168-193 40-65 (256)
294 1g6h_A High-affinity branched- 94.4 0.021 7.1E-07 50.8 3.0 26 168-193 32-57 (257)
295 2pze_A Cystic fibrosis transme 94.4 0.023 7.8E-07 49.6 3.2 26 168-193 33-58 (229)
296 4g1u_C Hemin import ATP-bindin 94.3 0.023 7.7E-07 50.8 3.2 26 168-193 36-61 (266)
297 2dyk_A GTP-binding protein; GT 94.3 0.029 9.8E-07 45.3 3.6 24 170-193 2-25 (161)
298 1a7j_A Phosphoribulokinase; tr 94.3 0.012 4.1E-07 53.4 1.3 26 168-193 4-29 (290)
299 1nlf_A Regulatory protein REPA 94.3 0.024 8.2E-07 51.0 3.3 26 168-193 29-54 (279)
300 2ghi_A Transport protein; mult 94.3 0.025 8.5E-07 50.4 3.3 26 168-193 45-70 (260)
301 1yrb_A ATP(GTP)binding protein 94.3 0.027 9.3E-07 50.0 3.7 26 168-193 13-38 (262)
302 2ff7_A Alpha-hemolysin translo 94.3 0.024 8.2E-07 50.1 3.2 26 168-193 34-59 (247)
303 2ixe_A Antigen peptide transpo 94.3 0.025 8.6E-07 50.7 3.3 26 168-193 44-69 (271)
304 2wji_A Ferrous iron transport 94.2 0.029 9.8E-07 45.9 3.4 23 170-192 4-26 (165)
305 2f9l_A RAB11B, member RAS onco 94.2 0.025 8.5E-07 47.9 3.1 24 170-193 6-29 (199)
306 2qmh_A HPR kinase/phosphorylas 94.2 0.028 9.6E-07 47.4 3.3 25 169-193 34-58 (205)
307 2yz2_A Putative ABC transporte 94.2 0.027 9.1E-07 50.4 3.3 26 168-193 32-57 (266)
308 1u0j_A DNA replication protein 94.2 0.053 1.8E-06 48.1 5.2 37 157-193 90-128 (267)
309 2zej_A Dardarin, leucine-rich 94.2 0.022 7.5E-07 47.6 2.6 22 171-192 4-25 (184)
310 1p9r_A General secretion pathw 94.2 0.081 2.8E-06 50.5 6.8 28 166-193 164-191 (418)
311 2r8r_A Sensor protein; KDPD, P 94.2 0.048 1.6E-06 47.1 4.7 24 170-193 7-30 (228)
312 2qi9_C Vitamin B12 import ATP- 94.1 0.027 9.1E-07 49.8 3.2 26 168-193 25-50 (249)
313 1q3t_A Cytidylate kinase; nucl 94.1 0.031 1.1E-06 48.9 3.6 26 168-193 15-40 (236)
314 1fx0_A ATP synthase alpha chai 94.1 0.05 1.7E-06 52.6 5.2 87 168-261 162-265 (507)
315 3mfy_A V-type ATP synthase alp 94.1 0.13 4.5E-06 50.2 8.1 57 160-221 217-275 (588)
316 2ce2_X GTPase HRAS; signaling 94.1 0.029 1E-06 45.3 3.2 23 171-193 5-27 (166)
317 1svm_A Large T antigen; AAA+ f 94.1 0.031 1.1E-06 52.6 3.7 27 167-193 167-193 (377)
318 3hjn_A DTMP kinase, thymidylat 94.1 0.055 1.9E-06 45.9 5.0 50 171-223 2-51 (197)
319 2nq2_C Hypothetical ABC transp 94.1 0.028 9.5E-07 49.8 3.2 26 168-193 30-55 (253)
320 1zj6_A ADP-ribosylation factor 94.0 0.066 2.2E-06 44.6 5.4 34 158-192 6-39 (187)
321 2ihy_A ABC transporter, ATP-bi 94.0 0.026 8.9E-07 50.8 3.0 26 168-193 46-71 (279)
322 3sop_A Neuronal-specific septi 94.0 0.031 1.1E-06 50.1 3.4 23 171-193 4-26 (270)
323 1z2a_A RAS-related protein RAB 93.9 0.032 1.1E-06 45.4 3.1 24 170-193 6-29 (168)
324 2vp4_A Deoxynucleoside kinase; 93.9 0.028 9.7E-07 49.0 2.8 25 168-192 19-43 (230)
325 1cp2_A CP2, nitrogenase iron p 93.9 0.064 2.2E-06 47.8 5.2 37 170-209 2-38 (269)
326 1fzq_A ADP-ribosylation factor 93.8 0.044 1.5E-06 45.5 3.9 25 168-192 15-39 (181)
327 3cr8_A Sulfate adenylyltranfer 93.8 0.05 1.7E-06 53.9 4.8 26 168-193 368-393 (552)
328 2wjg_A FEOB, ferrous iron tran 93.8 0.039 1.3E-06 46.0 3.5 23 170-192 8-30 (188)
329 2ck3_A ATP synthase subunit al 93.8 0.17 5.7E-06 49.0 8.2 102 160-261 152-272 (510)
330 1moz_A ARL1, ADP-ribosylation 93.8 0.034 1.2E-06 46.0 3.1 25 167-191 16-40 (183)
331 2c61_A A-type ATP synthase non 93.8 0.12 4.2E-06 49.6 7.2 102 160-261 142-259 (469)
332 1p5z_B DCK, deoxycytidine kina 93.8 0.025 8.5E-07 50.4 2.3 26 168-193 23-48 (263)
333 2nzj_A GTP-binding protein REM 93.7 0.034 1.2E-06 45.6 2.9 24 170-193 5-28 (175)
334 2www_A Methylmalonic aciduria 93.7 0.072 2.5E-06 49.6 5.5 26 168-193 73-98 (349)
335 2ged_A SR-beta, signal recogni 93.7 0.045 1.5E-06 45.9 3.7 26 168-193 47-72 (193)
336 3eph_A TRNA isopentenyltransfe 93.7 0.041 1.4E-06 51.9 3.7 24 170-193 3-26 (409)
337 4akg_A Glutathione S-transfera 93.7 0.17 5.8E-06 59.1 9.4 136 170-319 1268-1431(2695)
338 2lkc_A Translation initiation 93.6 0.048 1.6E-06 44.9 3.7 26 168-193 7-32 (178)
339 2bbs_A Cystic fibrosis transme 93.6 0.04 1.4E-06 49.9 3.4 26 168-193 63-88 (290)
340 1u8z_A RAS-related protein RAL 93.6 0.038 1.3E-06 44.8 3.1 24 170-193 5-28 (168)
341 2pjz_A Hypothetical protein ST 93.6 0.034 1.2E-06 49.5 3.0 24 169-192 30-53 (263)
342 3fvq_A Fe(3+) IONS import ATP- 93.6 0.044 1.5E-06 51.1 3.8 26 168-193 29-54 (359)
343 2gj8_A MNME, tRNA modification 93.6 0.04 1.4E-06 45.4 3.2 24 170-193 5-28 (172)
344 3con_A GTPase NRAS; structural 93.6 0.038 1.3E-06 46.1 3.1 24 170-193 22-45 (190)
345 3ld9_A DTMP kinase, thymidylat 93.5 0.051 1.8E-06 47.0 3.8 27 167-193 19-45 (223)
346 1svi_A GTP-binding protein YSX 93.5 0.05 1.7E-06 45.6 3.7 25 168-192 22-46 (195)
347 1w36_D RECD, exodeoxyribonucle 93.5 0.061 2.1E-06 54.2 4.9 25 169-193 164-188 (608)
348 1kao_A RAP2A; GTP-binding prot 93.5 0.041 1.4E-06 44.5 3.1 23 171-193 5-27 (167)
349 2fz4_A DNA repair protein RAD2 93.5 0.25 8.7E-06 43.0 8.4 22 172-193 111-132 (237)
350 1tq4_A IIGP1, interferon-induc 93.5 0.06 2E-06 51.2 4.6 25 168-192 68-92 (413)
351 1f6b_A SAR1; gtpases, N-termin 93.5 0.06 2E-06 45.5 4.2 25 168-192 24-48 (198)
352 1nrj_B SR-beta, signal recogni 93.5 0.05 1.7E-06 46.7 3.7 26 168-193 11-36 (218)
353 3kta_A Chromosome segregation 93.5 0.049 1.7E-06 45.3 3.6 24 170-193 27-50 (182)
354 1z08_A RAS-related protein RAB 93.5 0.041 1.4E-06 44.8 3.1 24 170-193 7-30 (170)
355 1m7b_A RND3/RHOE small GTP-bin 93.5 0.043 1.5E-06 45.7 3.2 24 170-193 8-31 (184)
356 1ek0_A Protein (GTP-binding pr 93.5 0.042 1.4E-06 44.7 3.1 23 171-193 5-27 (170)
357 1c1y_A RAS-related protein RAP 93.5 0.042 1.4E-06 44.6 3.1 23 171-193 5-27 (167)
358 1z0j_A RAB-22, RAS-related pro 93.5 0.042 1.4E-06 44.7 3.1 23 171-193 8-30 (170)
359 3v9p_A DTMP kinase, thymidylat 93.5 0.051 1.7E-06 47.2 3.7 25 169-193 25-49 (227)
360 3q72_A GTP-binding protein RAD 93.5 0.035 1.2E-06 45.1 2.5 22 171-192 4-25 (166)
361 2erx_A GTP-binding protein DI- 93.5 0.043 1.5E-06 44.7 3.1 22 171-192 5-26 (172)
362 3nh6_A ATP-binding cassette SU 93.4 0.033 1.1E-06 50.8 2.5 26 168-193 79-104 (306)
363 3pqc_A Probable GTP-binding pr 93.4 0.055 1.9E-06 45.2 3.8 25 169-193 23-47 (195)
364 1r8s_A ADP-ribosylation factor 93.4 0.045 1.6E-06 44.3 3.1 22 172-193 3-24 (164)
365 1g16_A RAS-related protein SEC 93.4 0.046 1.6E-06 44.5 3.2 24 170-193 4-27 (170)
366 3q85_A GTP-binding protein REM 93.4 0.043 1.5E-06 44.7 3.0 21 171-191 4-24 (169)
367 1ky3_A GTP-binding protein YPT 93.4 0.044 1.5E-06 45.2 3.1 25 169-193 8-32 (182)
368 3gmt_A Adenylate kinase; ssgci 93.4 0.042 1.5E-06 47.7 3.0 24 170-193 9-32 (230)
369 3kjh_A CO dehydrogenase/acetyl 93.4 0.089 3E-06 46.1 5.2 39 172-213 3-41 (254)
370 3ihw_A Centg3; RAS, centaurin, 93.4 0.045 1.5E-06 45.7 3.1 24 170-193 21-44 (184)
371 2fn4_A P23, RAS-related protei 93.4 0.047 1.6E-06 45.0 3.2 25 169-193 9-33 (181)
372 1wms_A RAB-9, RAB9, RAS-relate 93.4 0.045 1.5E-06 45.0 3.1 24 170-193 8-31 (177)
373 1nij_A Hypothetical protein YJ 93.4 0.039 1.3E-06 50.8 2.9 26 168-193 3-28 (318)
374 4hlc_A DTMP kinase, thymidylat 93.3 0.15 5.1E-06 43.4 6.4 24 170-193 3-26 (205)
375 2hxs_A RAB-26, RAS-related pro 93.3 0.05 1.7E-06 44.7 3.3 24 170-193 7-30 (178)
376 3tui_C Methionine import ATP-b 93.3 0.052 1.8E-06 50.6 3.7 26 168-193 53-78 (366)
377 2cxx_A Probable GTP-binding pr 93.3 0.046 1.6E-06 45.5 3.1 23 171-193 3-25 (190)
378 2yyz_A Sugar ABC transporter, 93.3 0.053 1.8E-06 50.6 3.7 26 168-193 28-53 (359)
379 2orv_A Thymidine kinase; TP4A 93.2 0.07 2.4E-06 46.1 4.1 108 169-289 19-126 (234)
380 1z47_A CYSA, putative ABC-tran 93.2 0.048 1.6E-06 50.8 3.3 26 168-193 40-65 (355)
381 2h92_A Cytidylate kinase; ross 93.2 0.045 1.5E-06 47.1 2.9 24 170-193 4-27 (219)
382 2qm8_A GTPase/ATPase; G protei 93.2 0.058 2E-06 50.0 3.9 27 167-193 53-79 (337)
383 2afh_E Nitrogenase iron protei 93.2 0.081 2.8E-06 47.7 4.8 38 170-210 3-40 (289)
384 2it1_A 362AA long hypothetical 93.2 0.055 1.9E-06 50.6 3.7 26 168-193 28-53 (362)
385 1m2o_B GTP-binding protein SAR 93.2 0.051 1.8E-06 45.6 3.2 24 169-192 23-46 (190)
386 3c5c_A RAS-like protein 12; GD 93.2 0.05 1.7E-06 45.5 3.1 24 170-193 22-45 (187)
387 1r2q_A RAS-related protein RAB 93.2 0.051 1.7E-06 44.2 3.1 24 170-193 7-30 (170)
388 2e87_A Hypothetical protein PH 93.2 1.8 6.2E-05 40.1 14.2 26 168-193 166-191 (357)
389 2ewv_A Twitching motility prot 93.2 0.074 2.5E-06 50.0 4.6 113 167-291 134-246 (372)
390 3llm_A ATP-dependent RNA helic 93.2 0.22 7.4E-06 43.4 7.3 104 157-263 66-188 (235)
391 3t1o_A Gliding protein MGLA; G 93.1 0.052 1.8E-06 45.4 3.2 24 170-193 15-38 (198)
392 3rlf_A Maltose/maltodextrin im 93.1 0.057 1.9E-06 50.7 3.7 26 168-193 28-53 (381)
393 2axn_A 6-phosphofructo-2-kinas 93.1 0.057 1.9E-06 53.2 3.8 26 168-193 34-59 (520)
394 2bme_A RAB4A, RAS-related prot 93.1 0.054 1.8E-06 45.0 3.2 24 170-193 11-34 (186)
395 1ypw_A Transitional endoplasmi 93.1 0.033 1.1E-06 58.1 2.2 46 148-193 477-535 (806)
396 1upt_A ARL1, ADP-ribosylation 93.1 0.053 1.8E-06 44.2 3.1 25 169-193 7-31 (171)
397 1z0f_A RAB14, member RAS oncog 93.1 0.053 1.8E-06 44.5 3.1 25 169-193 15-39 (179)
398 2y8e_A RAB-protein 6, GH09086P 93.0 0.056 1.9E-06 44.4 3.2 24 170-193 15-38 (179)
399 1v43_A Sugar-binding transport 93.0 0.059 2E-06 50.5 3.7 26 168-193 36-61 (372)
400 2gks_A Bifunctional SAT/APS ki 93.0 0.1 3.5E-06 51.7 5.6 44 150-193 351-396 (546)
401 2yv5_A YJEQ protein; hydrolase 93.0 0.084 2.9E-06 48.1 4.6 33 157-193 156-188 (302)
402 3kkq_A RAS-related protein M-R 93.0 0.054 1.9E-06 44.8 3.1 24 170-193 19-42 (183)
403 4dsu_A GTPase KRAS, isoform 2B 93.0 0.054 1.9E-06 45.0 3.1 23 171-193 6-28 (189)
404 2iwr_A Centaurin gamma 1; ANK 93.0 0.043 1.5E-06 45.2 2.4 24 170-193 8-31 (178)
405 3d31_A Sulfate/molybdate ABC t 93.0 0.049 1.7E-06 50.6 2.9 26 168-193 25-50 (348)
406 1g29_1 MALK, maltose transport 92.9 0.055 1.9E-06 50.8 3.3 26 168-193 28-53 (372)
407 3t5g_A GTP-binding protein RHE 92.9 0.059 2E-06 44.5 3.2 25 169-193 6-30 (181)
408 3bc1_A RAS-related protein RAB 92.9 0.057 1.9E-06 45.0 3.1 24 170-193 12-35 (195)
409 3tw8_B RAS-related protein RAB 92.9 0.046 1.6E-06 45.0 2.5 25 169-193 9-33 (181)
410 1mh1_A RAC1; GTP-binding, GTPa 92.9 0.059 2E-06 44.6 3.1 23 171-193 7-29 (186)
411 2obl_A ESCN; ATPase, hydrolase 92.9 0.13 4.4E-06 47.8 5.7 27 167-193 69-95 (347)
412 2oil_A CATX-8, RAS-related pro 92.8 0.058 2E-06 45.2 3.0 24 170-193 26-49 (193)
413 2a9k_A RAS-related protein RAL 92.8 0.059 2E-06 44.6 3.1 24 170-193 19-42 (187)
414 3llu_A RAS-related GTP-binding 92.8 0.06 2E-06 45.4 3.1 25 169-193 20-44 (196)
415 3vr4_A V-type sodium ATPase ca 92.8 0.51 1.8E-05 46.3 9.9 56 160-220 222-279 (600)
416 2efe_B Small GTP-binding prote 92.8 0.06 2E-06 44.4 3.1 24 170-193 13-36 (181)
417 1m8p_A Sulfate adenylyltransfe 92.8 0.09 3.1E-06 52.4 4.8 26 168-193 395-420 (573)
418 3bwd_D RAC-like GTP-binding pr 92.8 0.061 2.1E-06 44.4 3.1 24 170-193 9-32 (182)
419 3fdi_A Uncharacterized protein 92.8 0.07 2.4E-06 45.4 3.5 24 170-193 7-30 (201)
420 1lw7_A Transcriptional regulat 92.8 0.06 2E-06 50.5 3.3 25 169-193 170-194 (365)
421 2cjw_A GTP-binding protein GEM 92.8 0.061 2.1E-06 45.2 3.1 23 170-192 7-29 (192)
422 3dz8_A RAS-related protein RAB 92.8 0.065 2.2E-06 44.9 3.2 24 170-193 24-47 (191)
423 2j9r_A Thymidine kinase; TK1, 92.8 0.063 2.1E-06 45.9 3.1 111 168-290 27-139 (214)
424 2bov_A RAla, RAS-related prote 92.7 0.062 2.1E-06 45.4 3.1 25 169-193 14-38 (206)
425 2zts_A Putative uncharacterize 92.7 0.071 2.4E-06 46.7 3.6 50 168-221 29-78 (251)
426 1ksh_A ARF-like protein 2; sma 92.7 0.071 2.4E-06 44.3 3.4 27 167-193 16-42 (186)
427 2g6b_A RAS-related protein RAB 92.7 0.064 2.2E-06 44.2 3.1 24 170-193 11-34 (180)
428 1gwn_A RHO-related GTP-binding 92.7 0.065 2.2E-06 45.6 3.2 25 169-193 28-52 (205)
429 2fg5_A RAB-22B, RAS-related pr 92.7 0.065 2.2E-06 44.9 3.2 24 170-193 24-47 (192)
430 2atv_A RERG, RAS-like estrogen 92.7 0.081 2.8E-06 44.5 3.7 26 168-193 27-52 (196)
431 2ew1_A RAS-related protein RAB 92.7 0.066 2.3E-06 45.4 3.2 24 170-193 27-50 (201)
432 1vg8_A RAS-related protein RAB 92.7 0.063 2.2E-06 45.4 3.1 25 169-193 8-32 (207)
433 3tqf_A HPR(Ser) kinase; transf 92.7 0.086 3E-06 43.3 3.6 24 169-192 16-39 (181)
434 1oxx_K GLCV, glucose, ABC tran 92.7 0.046 1.6E-06 50.9 2.3 26 168-193 30-55 (353)
435 4dzz_A Plasmid partitioning pr 92.7 0.083 2.8E-06 44.7 3.8 41 170-213 2-43 (206)
436 1pui_A ENGB, probable GTP-bind 92.7 0.046 1.6E-06 46.5 2.2 26 167-192 24-49 (210)
437 2b6h_A ADP-ribosylation factor 92.6 0.052 1.8E-06 45.6 2.4 25 168-192 28-52 (192)
438 3oes_A GTPase rhebl1; small GT 92.6 0.069 2.4E-06 45.1 3.2 25 169-193 24-48 (201)
439 2p67_A LAO/AO transport system 92.6 0.082 2.8E-06 49.1 3.9 27 167-193 54-80 (341)
440 2woj_A ATPase GET3; tail-ancho 92.6 0.17 6E-06 47.1 6.2 27 167-193 16-42 (354)
441 3cbq_A GTP-binding protein REM 92.6 0.052 1.8E-06 45.8 2.4 23 169-191 23-45 (195)
442 1zbd_A Rabphilin-3A; G protein 92.6 0.067 2.3E-06 45.2 3.1 24 170-193 9-32 (203)
443 1zd9_A ADP-ribosylation factor 92.5 0.069 2.3E-06 44.6 3.1 24 170-193 23-46 (188)
444 3clv_A RAB5 protein, putative; 92.5 0.068 2.3E-06 44.9 3.1 25 169-193 7-31 (208)
445 2gf9_A RAS-related protein RAB 92.5 0.069 2.4E-06 44.6 3.1 24 170-193 23-46 (189)
446 1ega_A Protein (GTP-binding pr 92.5 0.073 2.5E-06 48.5 3.5 24 169-192 8-31 (301)
447 3gd7_A Fusion complex of cysti 92.5 0.079 2.7E-06 50.0 3.8 25 168-192 46-70 (390)
448 2gza_A Type IV secretion syste 92.5 0.066 2.3E-06 50.1 3.2 25 169-193 175-199 (361)
449 2fh5_B SR-beta, signal recogni 92.5 0.069 2.4E-06 45.6 3.1 25 169-193 7-31 (214)
450 3reg_A RHO-like small GTPase; 92.5 0.07 2.4E-06 44.7 3.1 24 170-193 24-47 (194)
451 3tmk_A Thymidylate kinase; pho 92.5 0.085 2.9E-06 45.4 3.6 25 169-193 5-29 (216)
452 2qnr_A Septin-2, protein NEDD5 92.5 0.063 2.2E-06 48.9 2.9 22 171-192 20-41 (301)
453 2h17_A ADP-ribosylation factor 92.4 0.071 2.4E-06 44.1 3.0 23 170-192 22-44 (181)
454 2a5j_A RAS-related protein RAB 92.4 0.072 2.5E-06 44.6 3.0 24 170-193 22-45 (191)
455 2o52_A RAS-related protein RAB 92.4 0.072 2.5E-06 45.0 3.1 25 169-193 25-49 (200)
456 3tkl_A RAS-related protein RAB 92.4 0.073 2.5E-06 44.6 3.1 24 170-193 17-40 (196)
457 2qu8_A Putative nucleolar GTP- 92.4 0.089 3E-06 45.5 3.7 25 168-192 28-52 (228)
458 1c9k_A COBU, adenosylcobinamid 92.4 0.07 2.4E-06 44.4 2.9 21 172-192 2-22 (180)
459 3k53_A Ferrous iron transport 92.3 0.094 3.2E-06 46.9 3.9 25 169-193 3-27 (271)
460 1z06_A RAS-related protein RAB 92.3 0.076 2.6E-06 44.3 3.1 24 170-193 21-44 (189)
461 2woo_A ATPase GET3; tail-ancho 92.3 0.16 5.4E-06 46.8 5.5 28 167-194 17-44 (329)
462 2bcg_Y Protein YP2, GTP-bindin 92.3 0.077 2.6E-06 44.9 3.2 24 170-193 9-32 (206)
463 2q3h_A RAS homolog gene family 92.3 0.073 2.5E-06 44.9 3.0 24 169-192 20-43 (201)
464 2gf0_A GTP-binding protein DI- 92.3 0.079 2.7E-06 44.5 3.2 25 169-193 8-32 (199)
465 1x3s_A RAS-related protein RAB 92.3 0.077 2.6E-06 44.3 3.1 24 170-193 16-39 (195)
466 3fkq_A NTRC-like two-domain pr 92.3 0.16 5.6E-06 47.7 5.6 39 168-209 142-181 (373)
467 2p5s_A RAS and EF-hand domain 92.3 0.076 2.6E-06 44.8 3.0 26 168-193 27-52 (199)
468 3ea0_A ATPase, para family; al 92.2 0.16 5.4E-06 44.3 5.2 40 168-209 3-43 (245)
469 4bas_A ADP-ribosylation factor 92.2 0.073 2.5E-06 44.7 2.9 26 168-193 16-41 (199)
470 4dkx_A RAS-related protein RAB 92.2 0.08 2.7E-06 45.6 3.1 22 171-192 15-36 (216)
471 2j1l_A RHO-related GTP-binding 92.2 0.08 2.7E-06 45.3 3.1 23 170-192 35-57 (214)
472 1bif_A 6-phosphofructo-2-kinas 92.1 0.087 3E-06 51.3 3.6 26 168-193 38-63 (469)
473 2g3y_A GTP-binding protein GEM 92.1 0.082 2.8E-06 45.3 3.0 22 170-191 38-59 (211)
474 2atx_A Small GTP binding prote 92.1 0.088 3E-06 44.1 3.2 24 170-193 19-42 (194)
475 3lxx_A GTPase IMAP family memb 92.0 0.083 2.8E-06 46.2 3.1 26 168-193 28-53 (239)
476 1u0l_A Probable GTPase ENGC; p 92.0 0.13 4.4E-06 46.8 4.5 34 157-193 160-193 (301)
477 1f2t_A RAD50 ABC-ATPase; DNA d 92.0 0.12 4E-06 41.6 3.7 24 169-192 23-46 (149)
478 2fv8_A H6, RHO-related GTP-bin 92.0 0.088 3E-06 44.7 3.2 24 170-193 26-49 (207)
479 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.067 2.3E-06 49.4 2.5 105 170-290 172-276 (330)
480 2hup_A RAS-related protein RAB 92.0 0.09 3.1E-06 44.5 3.2 25 169-193 29-53 (201)
481 2j0v_A RAC-like GTP-binding pr 92.0 0.089 3.1E-06 44.8 3.2 24 170-193 10-33 (212)
482 2npi_A Protein CLP1; CLP1-PCF1 92.0 0.077 2.6E-06 51.3 3.0 26 168-193 137-162 (460)
483 2il1_A RAB12; G-protein, GDP, 91.9 0.072 2.5E-06 44.7 2.5 24 170-193 27-50 (192)
484 2gco_A H9, RHO-related GTP-bin 91.9 0.094 3.2E-06 44.3 3.2 24 170-193 26-49 (201)
485 1x6v_B Bifunctional 3'-phospho 91.9 0.097 3.3E-06 52.5 3.7 26 168-193 51-76 (630)
486 3cph_A RAS-related protein SEC 91.8 0.091 3.1E-06 44.7 3.1 25 169-193 20-44 (213)
487 4b3f_X DNA-binding protein smu 91.8 0.14 4.7E-06 52.0 4.9 62 155-222 193-254 (646)
488 2h57_A ADP-ribosylation factor 91.8 0.068 2.3E-06 44.6 2.2 24 170-193 22-45 (190)
489 1ihu_A Arsenical pump-driving 91.8 0.15 5.1E-06 51.2 5.0 40 167-209 6-45 (589)
490 3q3j_B RHO-related GTP-binding 91.8 0.11 3.9E-06 44.4 3.6 24 170-193 28-51 (214)
491 2rcn_A Probable GTPase ENGC; Y 91.7 0.096 3.3E-06 48.7 3.3 24 170-193 216-239 (358)
492 3cwq_A Para family chromosome 91.7 0.2 6.8E-06 42.8 5.1 41 171-215 2-43 (209)
493 3zq6_A Putative arsenical pump 91.7 0.18 6.2E-06 46.3 5.1 25 169-193 14-38 (324)
494 3hdt_A Putative kinase; struct 91.7 0.13 4.6E-06 44.4 3.9 26 168-193 13-38 (223)
495 2fu5_C RAS-related protein RAB 91.7 0.056 1.9E-06 44.7 1.5 23 170-192 9-31 (183)
496 3iev_A GTP-binding protein ERA 91.6 0.095 3.3E-06 47.9 3.1 25 169-193 10-34 (308)
497 3ch4_B Pmkase, phosphomevalona 91.6 0.16 5.3E-06 43.0 4.1 26 168-193 10-35 (202)
498 2f7s_A C25KG, RAS-related prot 91.4 0.1 3.5E-06 44.6 2.9 24 170-193 26-49 (217)
499 2aka_B Dynamin-1; fusion prote 91.4 0.23 7.8E-06 44.8 5.4 26 168-193 25-50 (299)
500 3iby_A Ferrous iron transport 91.4 0.12 4.2E-06 45.7 3.5 23 170-192 2-24 (256)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.7e-43 Score=351.15 Aligned_cols=256 Identities=15% Similarity=0.187 Sum_probs=208.2
Q ss_pred ccchhhHHHHHHHhccC---CCeEEEEEecCCCcHHHHHHHHHh--hccCCCCCCcEEEEEEeCCCC--CHHHHHHHHHH
Q 042645 151 VGMQSTLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINN--SFLHTPNDFDFVIWEVVSRDL--QLGKIQESIAK 223 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~~~~~--~~~~l~~~i~~ 223 (427)
+||+.++++|.++|..+ +.++|+|+||||+||||||+++|+ +. ....+|+.++|+++++.+ ++..++..|+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 679999999999999999999998 33 457899999999999875 78999999999
Q ss_pred HhCCCCC-----CCCCCCHHHHHHHHHHHhcCC-cEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhhcC-
Q 042645 224 KIGLYNE-----SWDNKSFDEKAQEIFKTMRNR-KIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGLMD- 296 (427)
Q Consensus 224 ~l~~~~~-----~~~~~~~~~~~~~l~~~L~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~~~- 296 (427)
+++.... .....+...+...+++.|+++ |+||||||||+...+ .+ + ..+||+||||||+..++..+.
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCC
Confidence 9986522 112334567789999999996 999999999997654 11 1 127899999999999988775
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHhhccc
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLRSSAS 376 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~ 376 (427)
....|+|++|+.+++|+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + |+.+ +.+.+..+
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l~ 356 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKLE 356 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHHH
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHhh
Confidence 336799999999999999999987543 246778899999999999999999999999764 2 5543 44544433
Q ss_pred cCCCChHHHHHHHhhhcCCCCCChHhHHHh-----------hhcCCCCCccccHHHHHhhcC
Q 042645 377 KFSGMEKKALSRLKFSYDFLPSNETRFCLL-----------YCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 377 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~Wi 427 (427)
... ...+..+|.+||+.||+ ++|.||+ |||+||+++.|+ +++||
T Consensus 357 ~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~ 411 (549)
T 2a5y_B 357 SRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWS 411 (549)
T ss_dssp HHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHH
T ss_pred ccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeee
Confidence 211 13677889999999999 9999999 999999999999 66774
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1e-37 Score=320.55 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=197.1
Q ss_pred CccccchhhHHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcE-EEEEEeCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDF-VIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
+..|||+.++++|.++|.. ++.++|+|+||||+||||||+.++++. .+..+|+. ++|+++++.++...++..|+..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4459999999999999976 567899999999999999999999865 34567886 89999999999888888888764
Q ss_pred CCCCCC---C-C-----CCCHHHHHHHHHHHh---cCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh
Q 042645 226 GLYNES---W-D-----NKSFDEKAQEIFKTM---RNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 226 ~~~~~~---~-~-----~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
+..... . . ..+.+.+...++..| .++|+||||||+|+...|..+ .+||+||||||+..++.
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHH
Confidence 321100 0 0 012344566677765 689999999999998777664 26899999999999876
Q ss_pred hcCCCcceecc------CCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCC-ChHHHHH
Q 042645 294 LMDAHKSFKVE------CLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKK-APREWAH 366 (427)
Q Consensus 294 ~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~-~~~~w~~ 366 (427)
.+.....+.++ +|+.+|+++||.+.++.. . .++..+| |+|+||||.++|+.|+.+. +..+|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 44433456677 999999999999986432 1 2223443 9999999999999999863 6778864
Q ss_pred HHHHHhhccccCCCChHHHHHHHhhhcCCCCCChH-hHHHhhhcCCCCCccccHHHHHhhcC
Q 042645 367 AIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNET-RFCLLYCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 367 ~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cf~~~s~fp~~~~i~~~~Li~~Wi 427 (427)
. . ...+..+|.+||+.||+ +. |+||++||+||+++.|+++.|+.+|+
T Consensus 350 ~------------~-~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~ 397 (1221)
T 1vt4_I 350 V------------N-CDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWF 397 (1221)
T ss_dssp C------------S-CHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHC
T ss_pred C------------C-hhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhc
Confidence 2 1 25899999999999999 78 99999999999999999999999996
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-36 Score=335.37 Aligned_cols=270 Identities=20% Similarity=0.286 Sum_probs=217.7
Q ss_pred CCCCCccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCCCC--HHHHH
Q 042645 144 RPLPPTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDFVIWEVVSRDLQ--LGKIQ 218 (427)
Q Consensus 144 ~~~~~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~~--~~~l~ 218 (427)
|+.++.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++...... .++.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 34456799999999999999953 57889999999999999999999988522233 556788999988543 44456
Q ss_pred HHHHHHhCCCCC--CCCCCCHHHHHHHHHHHhcCC--cEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHhh
Q 042645 219 ESIAKKIGLYNE--SWDNKSFDEKAQEIFKTMRNR--KIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCGL 294 (427)
Q Consensus 219 ~~i~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~~ 294 (427)
..++..+..... .....+.+.+...++..+.++ |+||||||+|+...|..+ .+||+||||||+..++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 677777765432 123456788889999999877 999999999998776654 568999999999998854
Q ss_pred -cCCCcceeccC-CChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHHHh
Q 042645 295 -MDAHKSFKVEC-LGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEVLR 372 (427)
Q Consensus 295 -~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~l~ 372 (427)
+.....+.+++ |+++|+++||...++... +...+++++|+++|+|+||||.++|++|+.+. ..|..+++.+.
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 45567789986 999999999999885432 34456699999999999999999999998854 47999999887
Q ss_pred hccccC-----CCChHHHHHHHhhhcCCCCCChHhHHHhhhcCCCCCccccHHHHHhhcC
Q 042645 373 SSASKF-----SGMEKKALSRLKFSYDFLPSNETRFCLLYCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 373 ~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~Wi 427 (427)
...+.. ....+.+..+|.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~ 405 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWD 405 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHT
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhC
Confidence 654221 11124799999999999999 8999999999999999999999999994
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=296.50 Aligned_cols=266 Identities=20% Similarity=0.303 Sum_probs=205.4
Q ss_pred CCCCccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhccCC-CCCC-cEEEEEEeCCCCCHHHHHHH
Q 042645 145 PLPPTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSFLHT-PNDF-DFVIWEVVSRDLQLGKIQES 220 (427)
Q Consensus 145 ~~~~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~~~~~~~~~l~~~ 220 (427)
+.++.||||+.++++|.++|.. ++.++|+|+|+||+||||||..++++. .. ..+| +.++|++++.. +...++..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3456799999999999999974 467899999999999999999999875 22 4567 57999999765 33344444
Q ss_pred H---HHHhCCCC--CCCCCCCHHHHHHHHHHHhcC--CcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh
Q 042645 221 I---AKKIGLYN--ESWDNKSFDEKAQEIFKTMRN--RKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 221 i---~~~l~~~~--~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
+ +..++... ......+.+.....+...+.+ +++||||||+|+...+..+ .+|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 4 34554211 112345667788888888876 7999999999986554432 46899999999998876
Q ss_pred hcCCCcceec---cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHcCCCChHHHHHHHHH
Q 042645 294 LMDAHKSFKV---ECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMASKKAPREWAHAIEV 370 (427)
Q Consensus 294 ~~~~~~~~~l---~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~~~~~~~~w~~~l~~ 370 (427)
.+. ...+.+ ++|+.+|+++||...++... +...+.+.+|+++|+|+||||.++|+.|+... ..|..+++.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~ 344 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQ 344 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHH
Confidence 543 334444 58999999999999986532 11234589999999999999999999998753 379988888
Q ss_pred Hhhcccc-----CCCChHHHHHHHhhhcCCCCCChHhHHHhhhcCCCCCccccHHHHHhhcC
Q 042645 371 LRSSASK-----FSGMEKKALSRLKFSYDFLPSNETRFCLLYCGFFPEDYSISIEDLIDCWI 427 (427)
Q Consensus 371 l~~~~~~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~fp~~~~i~~~~Li~~Wi 427 (427)
+...... .......+..++..||+.||+ +.|.||.+||+||+++.|+.+.|+.+|.
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~ 405 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWD 405 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHT
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhc
Confidence 8765321 111234899999999999999 8999999999999999999999999884
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.73 E-value=3.5e-17 Score=159.14 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=157.3
Q ss_pred CCCccccchhhHHHHHHHh-c----c--CCCeEEEE--EecCCCcHHHHHHHHHhhccCC--CCCCc-EEEEEEeCCCCC
Q 042645 146 LPPTVVGMQSTLDRVWRCL-T----E--EPVGIVGL--YGMGGVGKTTLLTQINNSFLHT--PNDFD-FVIWEVVSRDLQ 213 (427)
Q Consensus 146 ~~~~~vGR~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~~~~~~ 213 (427)
.+..|+||+.++++|.+++ . . ...+.+.| +|++|+|||||++.+++..... ...+. .++|+++....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3477999999999999988 4 2 24567778 9999999999999999876210 00122 457888777778
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc--------ccccccCCCC-C--C--C
Q 042645 214 LGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD--------LAQVGLPVPS-R--A--S 278 (427)
Q Consensus 214 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~--------~~~~~~~l~~-~--~--~ 278 (427)
...++..++.+++...+. ...+.......+...+. +++++|||||++.... +..+...+.. . + .
T Consensus 100 ~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 899999999999764321 23345666777777765 7899999999986421 2212122211 1 2 3
Q ss_pred CcEEEEecCChhHHhhc--------C-CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC------C
Q 042645 279 ASKVVFTTREFEVCGLM--------D-AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECG------G 343 (427)
Q Consensus 279 gs~IivTtR~~~v~~~~--------~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~------G 343 (427)
+..+|+||+...+...+ . ....+.+++|+.++++++|...+.... .......+....|++.|+ |
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-RDTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-CTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-CCCCCChHHHHHHHHHHHHhccCCC
Confidence 45578788765532111 1 122389999999999999987643111 011122466889999999 9
Q ss_pred CchHHHHHHHHHc-----CC---CChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCCChHhHHHhhhcCC
Q 042645 344 LPLALITVGRAMA-----SK---KAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNETRFCLLYCGFF 411 (427)
Q Consensus 344 ~Plai~~~~~~L~-----~~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~f 411 (427)
+|..+..++.... .. -+...+..++.... . ...+.-++..||+ +.+.++..++.+
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-----------~-~~~~~~~l~~l~~-~~~~~l~aia~l 320 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-----------A-ASIQTHELEALSI-HELIILRLIAEA 320 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-----------c-cchHHHHHHcCCH-HHHHHHHHHHHH
Confidence 9976665543321 11 12233332222110 0 2334556788888 788888877764
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.72 E-value=4.2e-17 Score=154.82 Aligned_cols=198 Identities=14% Similarity=0.096 Sum_probs=134.0
Q ss_pred CCCccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC------CHHHHHH
Q 042645 146 LPPTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL------QLGKIQE 219 (427)
Q Consensus 146 ~~~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~------~~~~l~~ 219 (427)
.++.|+||+.++++|.+++..+ +++.|+|++|+|||||++.+++.. . .+|+++.... +...++.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHH
Confidence 3467999999999999998764 789999999999999999999875 1 6777765432 5666777
Q ss_pred HHHHHhCCC--------------C--CCCCCCCHHHHHHHHHHHhcC-CcEEEEEeccCCccc-----ccccccCC---C
Q 042645 220 SIAKKIGLY--------------N--ESWDNKSFDEKAQEIFKTMRN-RKIVLLLDDIWELFD-----LAQVGLPV---P 274 (427)
Q Consensus 220 ~i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~~-----~~~~~~~l---~ 274 (427)
.+...+... . ......+..++...+.+.... ++++|||||++.... ...+...+ .
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 776655320 0 000123455566666665543 499999999987543 11111111 1
Q ss_pred CCCCCcEEEEecCChhH-Hhh----------cC-CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC
Q 042645 275 SRASASKVVFTTREFEV-CGL----------MD-AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECG 342 (427)
Q Consensus 275 ~~~~gs~IivTtR~~~v-~~~----------~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~ 342 (427)
....+..+|+|++.... ... .+ ....+.+.+|+.+|+.+++...+...+.. ...+.+..|++.|+
T Consensus 160 ~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLD 236 (350)
T ss_dssp HHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHT
T ss_pred HhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhC
Confidence 11246889999887653 211 01 12368999999999999998865432211 12456889999999
Q ss_pred CCchHHHHHHHHHc
Q 042645 343 GLPLALITVGRAMA 356 (427)
Q Consensus 343 G~Plai~~~~~~L~ 356 (427)
|+|+++..++..+.
T Consensus 237 G~P~~l~~~~~~~~ 250 (350)
T 2qen_A 237 GIPGWLVVFGVEYL 250 (350)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999987654
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.71 E-value=2.2e-16 Score=150.20 Aligned_cols=195 Identities=15% Similarity=0.190 Sum_probs=126.4
Q ss_pred CCccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-----CCHHHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-----LQLGKIQESI 221 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-----~~~~~l~~~i 221 (427)
+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+++.. . . ..+|+++... .+...++..+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 4679999999999999 765 699999999999999999999886 2 2 2578877642 3445555555
Q ss_pred HHHhC------------------CCCCCC---------CCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc-----ccccc
Q 042645 222 AKKIG------------------LYNESW---------DNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF-----DLAQV 269 (427)
Q Consensus 222 ~~~l~------------------~~~~~~---------~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----~~~~~ 269 (427)
...+. ...+.. .......+...+.+... ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 44331 000000 12234445544444322 49999999997642 22222
Q ss_pred ccCCCCCCCCcEEEEecCChhHHh-h---------c-CC-CcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Q 042645 270 GLPVPSRASASKVVFTTREFEVCG-L---------M-DA-HKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETV 337 (427)
Q Consensus 270 ~~~l~~~~~gs~IivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i 337 (427)
...+.....+..+|+|++...... . . +. ...+.+.+|+.+|+.+++...+..... .... ...|
T Consensus 161 l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~----~~~i 235 (357)
T 2fna_A 161 LAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD----YEVV 235 (357)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC----HHHH
T ss_pred HHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc----HHHH
Confidence 111111124678999999865321 1 1 11 246899999999999999886532111 1112 2789
Q ss_pred HHHcCCCchHHHHHHHHHcC
Q 042645 338 ARECGGLPLALITVGRAMAS 357 (427)
Q Consensus 338 ~~~~~G~Plai~~~~~~L~~ 357 (427)
++.|+|+|+++..++..+..
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHcc
Confidence 99999999999999887654
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=2.2e-14 Score=137.93 Aligned_cols=247 Identities=15% Similarity=0.031 Sum_probs=156.1
Q ss_pred CCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCC----CCC-CcEEEEEEeCCCC-CHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHT----PND-FDFVIWEVVSRDL-QLGK 216 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~ 216 (427)
|..++||+.+++++.+++.. +..+.+.|+|++|+||||||+.+++..... ... ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 36799999999999877753 346789999999999999999999875211 011 3456788877766 8888
Q ss_pred HHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--cccc-ccCCCCCCCCcEEEEecCChhHHh
Q 042645 217 IQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQV-GLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 217 l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~-~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
++..++..+..........+.......+...+..++.+|||||++.... .... ...+.....+..+|+||+......
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 9999998883222222344456777888888887777999999986432 1111 111111115778898988753211
Q ss_pred hc------CCCcceeccCCChHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcC---CCchHH-HHHHHH--Hc---
Q 042645 294 LM------DAHKSFKVECLGYEDAWRLFEEKVGR--DILDSHPDIPELAETVARECG---GLPLAL-ITVGRA--MA--- 356 (427)
Q Consensus 294 ~~------~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai-~~~~~~--L~--- 356 (427)
.+ .....+.+++++.++..+++...+.. .....+ .+..+.|++.|+ |.|..+ ..+-.. +.
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 10 11237999999999999999987631 111122 345777888888 988744 333222 22
Q ss_pred CCCChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCCChHhHHHhhhcC
Q 042645 357 SKKAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNETRFCLLYCGF 410 (427)
Q Consensus 357 ~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s~ 410 (427)
..-+.+.+..++..... ..+..++..|++ +.+..+..++.
T Consensus 256 ~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~ 295 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE 295 (384)
T ss_dssp SCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH
Confidence 12356666666554321 234445556665 44544444443
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=4.2e-14 Score=136.00 Aligned_cols=244 Identities=15% Similarity=0.095 Sum_probs=153.3
Q ss_pred CCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQE 219 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~ 219 (427)
|+.++||+.+++++.+++.. ...+.+.|+|++|+||||||+.+++...... +.-..++|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 47899999999999998843 4567899999999999999999998762110 1123567888888888999999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCcccc----cccc---cCCCCC--CCCcEEEEecCC
Q 042645 220 SIAKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFDL----AQVG---LPVPSR--ASASKVVFTTRE 288 (427)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~~----~~~~---~~l~~~--~~gs~IivTtR~ 288 (427)
.++.+++...+. ...+..+....+...+. +++.+|||||++..... ..+. ...... ..+..+|.||+.
T Consensus 98 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999764322 34456666777777774 56899999999865321 1121 111111 345677778776
Q ss_pred hhH--------HhhcCCCcceeccCCChHHHHHHHHHHhCC--CCCCCCCCHHHHHHHHHHHcC---CCchHHHHHH-HH
Q 042645 289 FEV--------CGLMDAHKSFKVECLGYEDAWRLFEEKVGR--DILDSHPDIPELAETVARECG---GLPLALITVG-RA 354 (427)
Q Consensus 289 ~~v--------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~--~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~~-~~ 354 (427)
.+. ...+ ....+.+++++.++..+++...+.. .....+++ ..+.+++.++ |.|..+..+. ..
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPD---VVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSS---HHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHH---HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 532 1111 1146899999999999999987532 11122333 3677888887 9995443322 22
Q ss_pred Hc-----C--CCChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCCChHhHHHhhhc
Q 042645 355 MA-----S--KKAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPSNETRFCLLYCG 409 (427)
Q Consensus 355 L~-----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cf~~~s 409 (427)
.. . .-+.+.+..++..... ..+.-++..||+ +.+..+..+.
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~ 300 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIM 300 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHH
Confidence 11 1 1245566655544321 234445667776 4454444333
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.3e-14 Score=139.51 Aligned_cols=204 Identities=12% Similarity=0.140 Sum_probs=134.3
Q ss_pred CCCccccchhhHHHHHHHhcc----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 146 LPPTVVGMQSTLDRVWRCLTE----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 146 ~~~~~vGR~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
.+..|+||+.+++.+.+++.. +..+.+.|+|++|+|||||++.+++...........++|+++....+...++..+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 347899999999999998873 4567899999999999999999998762111102356788877667788888888
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc------ccccccCCCC-CCCCcEEEEecCChhHH
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD------LAQVGLPVPS-RASASKVVFTTREFEVC 292 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~------~~~~~~~l~~-~~~gs~IivTtR~~~v~ 292 (427)
+..++..... ...+..+....+...+. +++.+|||||++.... +..+...+.. ...+..+|+||+..+..
T Consensus 98 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp TTTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8877654322 23345666666776665 4589999999976421 1122111111 23356678888866432
Q ss_pred hhcC-------CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcC---CCchHHHHH
Q 042645 293 GLMD-------AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECG---GLPLALITV 351 (427)
Q Consensus 293 ~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~---G~Plai~~~ 351 (427)
..+. ....+.+++++.++..+++...+.... ....-..+..+.+++.++ |.|..+..+
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2211 114789999999999999998653111 011223456777888887 999855443
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=7.7e-14 Score=134.30 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=138.6
Q ss_pred CCccccchhhHHHHHHHhcc----CCCe--EEEEEecCCCcHHHHHHHHHhhccCCCCC-CcEEEEEEeCCCCCHHHHHH
Q 042645 147 PPTVVGMQSTLDRVWRCLTE----EPVG--IVGLYGMGGVGKTTLLTQINNSFLHTPND-FDFVIWEVVSRDLQLGKIQE 219 (427)
Q Consensus 147 ~~~~vGR~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~~~~~~~~~l~~ 219 (427)
|+.++||+.+++++.+++.. +... .+.|+|++|+|||||++.+++... .. -..+++++++...+...++.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHH
Confidence 46799999999999998864 3334 899999999999999999998872 22 23567788777778889999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCcc--cccccccCCCCC-C---CCcEEEEecCChhH
Q 042645 220 SIAKKIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELF--DLAQVGLPVPSR-A---SASKVVFTTREFEV 291 (427)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~--~~~~~~~~l~~~-~---~gs~IivTtR~~~v 291 (427)
.++..++...+. ...+.......+...+. +++.+|||||++... ....+...+... . .+..+|++|+....
T Consensus 93 ~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 999998754322 23455666666666664 578999999998652 222222222211 1 36678888876644
Q ss_pred HhhcC-------CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHc---------CCCchHHHHHHH
Q 042645 292 CGLMD-------AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVAREC---------GGLPLALITVGR 353 (427)
Q Consensus 292 ~~~~~-------~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~---------~G~Plai~~~~~ 353 (427)
...+. ....+.+++++.++..+++...+.... ....-..+..+.|++.+ +|.|..+..+..
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 32221 123689999999999999988764211 01122346688899999 798876555443
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.47 E-value=3.7e-13 Score=120.50 Aligned_cols=197 Identities=15% Similarity=0.162 Sum_probs=117.0
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++||+..++.|..++..+. .+.+.|+|++|+||||||+.+++.... ...+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~-~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC-TTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC-CCCCCC------CCCcccHH-HHHHhccCC
Confidence 468999999999999997654 457999999999999999999987621 111100 00000000 001100000
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChhH-H-hhc
Q 042645 227 LYNE--SWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFEV-C-GLM 295 (427)
Q Consensus 227 ~~~~--~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~v-~-~~~ 295 (427)
.... .............+.+.+ .+++.+||+||++.. ..+..+...+.....+..+|+||+.... . ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~ 174 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 174 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHH
Confidence 0000 000001111222222222 346899999999764 2344444444334456788888876432 1 112
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
.....+.+++++.++..+++...+...... -..+..+.|++.|+|+|..+..+...+
T Consensus 175 ~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 175 SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHTTCC---BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhccCCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 223578999999999999999877433211 124568899999999999988776544
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.44 E-value=7.5e-13 Score=116.78 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=116.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
..++|++..++.+.+++.....+.+.|+|++|+|||++|+.+++.... ...-...+.++.+.......+...+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHHHHHHHhcc
Confidence 468999999999999998776666999999999999999999887521 1111123344444333333222222211111
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChhH--HhhcCCCcceec
Q 042645 228 YNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFEV--CGLMDAHKSFKV 303 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v--~~~~~~~~~~~l 303 (427)
.. ...+++.+||+||++... ....+...+.....+..+|+||+.... .........+.+
T Consensus 96 ~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~ 158 (226)
T 2chg_A 96 AP-----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRF 158 (226)
T ss_dssp CC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeec
Confidence 00 012578999999998652 233333333333456788888876532 111122347899
Q ss_pred cCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHH
Q 042645 304 ECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 304 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 354 (427)
.+++.++..+++.+.+...+.. -..+..+.|++.++|+|..+..+...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 159 KPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999876432211 12456788999999999966554433
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=6.5e-12 Score=117.56 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=114.1
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.... .......++++.+....... .++++..+..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~ 98 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGIDV-VRNQIKHFAQ 98 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSHHH-HHTHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccChHH-HHHHHHHHHh
Confidence 468999999999999998876666999999999999999999987521 11111233333333222221 1222221110
Q ss_pred CCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChhH--HhhcCCCccee
Q 042645 228 YNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFEV--CGLMDAHKSFK 302 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v--~~~~~~~~~~~ 302 (427)
.. ..+ .+++.++|+||++... ....+...+.....++.+|+||+...- .........+.
T Consensus 99 ~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 99 KK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp BC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 00 001 3468999999998642 233343333333456788888876432 11122335789
Q ss_pred ccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHH-HHHH
Q 042645 303 VECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLAL-ITVG 352 (427)
Q Consensus 303 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai-~~~~ 352 (427)
+.+++.++..+++...+...+.. -..+....|++.|+|.|..+ ..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999876432211 12456788999999999654 4443
No 15
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.28 E-value=4.5e-12 Score=98.82 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhChHHHHHHHHHHHHHHHHHH
Q 042645 9 LSCDDTISRCLDCIVSQTGYICHLKDNLDALRTEFQKLIEARNDVLIRVTVAEQRQ-MRRLQQVQGWLSRVQDVEEEVR 86 (427)
Q Consensus 9 ~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~v~~wl~~v~~~~~~~~ 86 (427)
|+++++++||.+++.+|+.++.++++++++|+++|++|+++|.| ++.+. ...++.++.|+++||+++||+|
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999988 44442 2357899999999999999999
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=4.9e-11 Score=111.73 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.... ...-...+.+..+....... +...+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~~~----- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINV-IREKV----- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHT-THHHH-----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHH-HHHHH-----
Confidence 468999999999999998877667999999999999999999987521 11001223333222111110 01111
Q ss_pred CCCCCCCCCHHHHHHHHHH---HhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChhH--HhhcCCCcc
Q 042645 228 YNESWDNKSFDEKAQEIFK---TMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFEV--CGLMDAHKS 300 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~---~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v--~~~~~~~~~ 300 (427)
..+.. ...+++.++|+||++... ....+...+.....++++|+||....- .........
T Consensus 98 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 98 --------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp --------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred --------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 11111 112578899999998652 233333333333456788888876432 111112246
Q ss_pred eeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHc
Q 042645 301 FKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMA 356 (427)
Q Consensus 301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 356 (427)
+.+.+++.++...++...+...+... ..+..+.|++.++|.|..+..+...+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEE---CHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 89999999999999998775433211 245678899999999997665544443
No 17
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.10 E-value=4.6e-10 Score=104.66 Aligned_cols=182 Identities=15% Similarity=0.127 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
..++|++..++.+.+++..+..+.+.|+|++|+|||++|+.+++.... ...-...+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~------------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGI------------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT-TCHHHHCEEEETTSTTCT-------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC-CcccCCeEEEeCccccCh-------------
Confidence 468999999999999998776666999999999999999999987521 110011223333321110
Q ss_pred CCCCCCCCCHHHHHHHHHHH--h-cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChh-H-HhhcCCCcc
Q 042645 228 YNESWDNKSFDEKAQEIFKT--M-RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-V-CGLMDAHKS 300 (427)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~--L-~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v-~~~~~~~~~ 300 (427)
.........+... + .+++.++|+||++... ....+...+.....++.+|+||.... + .........
T Consensus 83 -------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 83 -------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp -------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred -------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0111111111111 1 2568899999997652 23444444444445677888876643 1 111223357
Q ss_pred eeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 301 FKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 301 ~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
+.+.+++.++..+++...+...+.. -..+....|++.++|.+..+.....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVK---ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCC---BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8999999999999999887543322 2245678899999999987655443
No 18
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.10 E-value=8.9e-10 Score=101.60 Aligned_cols=168 Identities=10% Similarity=0.057 Sum_probs=105.7
Q ss_pred cccchhhHHHHHHHhc----cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCC--CC--cEEEEEEeCCCCCHHHHHHHH
Q 042645 150 VVGMQSTLDRVWRCLT----EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN--DF--DFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f--~~~~wv~~~~~~~~~~l~~~i 221 (427)
+.||++++++|...|. .+..+.+.|+|++|+|||++++.+++.+..... .. -.++++++....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 7899999999987775 357778999999999999999999998732111 11 135677777778889999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHh---cCCcEEEEEeccCCcccccccccCC--C-CCCCCcEEEEecCChhH----
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTM---RNRKIVLLLDDIWELFDLAQVGLPV--P-SRASASKVVFTTREFEV---- 291 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~~~~~~~~l--~-~~~~gs~IivTtR~~~v---- 291 (427)
.+++...... .... ......+...+ .+++++++||+++....-+.+...+ + .......||.++...+.
T Consensus 102 ~~~L~g~~~~-~~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLC-GDIS-LEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC---CCCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCC-chHH-HHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 9999643211 1222 23333333333 4678999999998764211121111 1 11112233334433221
Q ss_pred -----HhhcCCCcceeccCCChHHHHHHHHHHhC
Q 042645 292 -----CGLMDAHKSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 292 -----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
...+. ...+.+++++.+|..+++.+++.
T Consensus 180 L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11111 14689999999999999998863
No 19
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.03 E-value=1.8e-09 Score=103.03 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=111.7
Q ss_pred CccccchhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.... ...+.. ..+........+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~-~~~~~~-------~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC-ETGITA-------TPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC-TTCSCS-------SCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-CCCCCC-------CCCcccHHHHHHhccCC
Confidence 458999999999999997754 457899999999999999999987621 111100 00000001111111000
Q ss_pred -----CCCCC-CCCCCHHHHHHHHHHH-hcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChhH--Hhhc
Q 042645 227 -----LYNES-WDNKSFDEKAQEIFKT-MRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFEV--CGLM 295 (427)
Q Consensus 227 -----~~~~~-~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~v--~~~~ 295 (427)
..... ........+...+... ..+++.+||+||++... ....+...+.....+..+|++|....- ....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00000 0111112222111110 13567899999997642 233333333333445677777765431 1222
Q ss_pred CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 296 DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 296 ~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
.....+.+.+++.++..+++...+...+.. ...+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~---~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEHIA---HEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCC---BCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 234578999999999999998776332211 1245578899999999998876543
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.03 E-value=4.2e-09 Score=98.43 Aligned_cols=176 Identities=15% Similarity=0.083 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..|+|++..+..+..++.. .....+.|+|++|+|||++|+.+++.. .. ...+++.+......++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~---~~~~~~~~~~~~~~~l~~--- 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GV---NLRVTSGPAIEKPGDLAA--- 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TC---CEEEECTTTCCSHHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEeccccCChHHHHH---
Confidence 5689999999988887752 344678999999999999999999876 22 223444333222222111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCC--------C----------CCCCcEE
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVP--------S----------RASASKV 282 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~--------~----------~~~gs~I 282 (427)
.+... ..++.+|+|||++.... ...+...+. . ...+..+
T Consensus 83 --------------------~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 83 --------------------ILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp --------------------HHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred --------------------HHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 11110 13566888999876421 111110000 0 0123456
Q ss_pred EEecCChh-HHhhc-C-CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHc
Q 042645 283 VFTTREFE-VCGLM-D-AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAMA 356 (427)
Q Consensus 283 ivTtR~~~-v~~~~-~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L~ 356 (427)
|.||.... +...+ . ....+.+.+++.++..+++...+...... -..+....|++.++|+|..+..+...+.
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR---ITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66665432 21111 1 12468999999999999998887543322 2246688999999999998877766553
No 21
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.90 E-value=1.4e-09 Score=93.25 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=41.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++||+.+++++.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988777789999999999999999998876
No 22
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=5.5e-09 Score=98.85 Aligned_cols=194 Identities=11% Similarity=0.084 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCC-CCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHT-PNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|++..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..++.+.......+ .+....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 4689999999999999988755559999999999999999998875210 0111 2233333332232222 22222211
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCcEEEEecCChh-H-HhhcCCCccee
Q 042645 227 LYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASASKVVFTTREFE-V-CGLMDAHKSFK 302 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs~IivTtR~~~-v-~~~~~~~~~~~ 302 (427)
..... ..... .....-.+++-+|++|+++.... ...+...+.......++|++|.... + .........+.
T Consensus 115 ~~~~~-~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~ 188 (353)
T 1sxj_D 115 RLTVS-KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFR 188 (353)
T ss_dssp HSCCC-CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEE
T ss_pred hhccc-ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEE
Confidence 00000 00000 00011123567999999876421 2223222322234567777775432 1 11111124688
Q ss_pred ccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 303 VECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 303 l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
+.+++.++...++...+...+.. -..+..+.|++.++|.|..+..+.
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999877443322 224668899999999998755443
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.88 E-value=1.1e-09 Score=97.65 Aligned_cols=173 Identities=7% Similarity=0.025 Sum_probs=102.6
Q ss_pred Cccccc---hhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 148 PTVVGM---QSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 148 ~~~vGR---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
..|+|. +..++.+..++..+..+.+.|+|++|+||||||+.+++.... ....+.|++++..... +.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGS------CG--
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHH------HH--
Confidence 456763 355666666666556778999999999999999999988731 1234556655431110 00
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----ccccccCCCC-CCCC-cEEEEecCChh--------
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----LAQVGLPVPS-RASA-SKVVFTTREFE-------- 290 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~g-s~IivTtR~~~-------- 290 (427)
. ....+ .++.+|||||++.... ...+...+.. ...+ .++|+||+...
T Consensus 97 --------------~----~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 --------------A----LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp --------------G----GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred --------------H----HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 00011 3467999999976422 1122221110 0112 24777776422
Q ss_pred -HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 291 -VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 291 -v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
+...+.....+.+++++.++..+++...+...+. .-..+..+.|++.++|.+..+..+..
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 1111122257899999999999999987743221 12246688899999999877665543
No 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.85 E-value=2.8e-08 Score=96.68 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=106.6
Q ss_pred ccc-cchhh--HHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHH
Q 042645 149 TVV-GMQST--LDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKK 224 (427)
Q Consensus 149 ~~v-GR~~~--~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~ 224 (427)
.|+ |.... ...+......+. ...+.|+|++|+||||||+.+++........ ..+++++. ..+...+...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~------~~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS------EKFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEH------HHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHHH
Confidence 455 64433 333444443433 6789999999999999999999876211111 22345443 2344444444
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----ccccccCCCC-CCCCcEEEEecCChh---------
Q 042645 225 IGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----LAQVGLPVPS-RASASKVVFTTREFE--------- 290 (427)
Q Consensus 225 l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----~~~~~~~l~~-~~~gs~IivTtR~~~--------- 290 (427)
+... . ...+...+..++.+|+|||++.... -+.+...+.. ...|..||+||.+..
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 4211 1 1223334444678999999976432 1222222211 134677888887632
Q ss_pred HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 291 VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 291 v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
+...+.....+.+++++.++..+++.+.+...+...+++ ....|++.++|.+..+..+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e---~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE---VLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHCCSCHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHhcCCCHHHHHHH
Confidence 233333445789999999999999998774322223333 3778899999998766543
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.85 E-value=1.9e-08 Score=92.16 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
..++|.+..+++|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH-
Confidence 5689999999999888742 345679999999999999999999886 22 122233221100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc------------c----ccccccCCC--CC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF------------D----LAQVGLPVP--SR 276 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------------~----~~~~~~~l~--~~ 276 (427)
. ............+.......+.+|+|||++... . +..+...+. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 011111122222233334577899999997531 0 111111111 12
Q ss_pred CCCcEEEEecCChhHHh--hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CchHHHH
Q 042645 277 ASASKVVFTTREFEVCG--LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG-LPLALIT 350 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~ 350 (427)
..+..||.||....... ... ....+.+++.+.++..+++...+.......+.. ...|++.+.| .|-.+..
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 23566777776543211 111 123688999999999999998876543222223 5667778887 4545544
Q ss_pred H
Q 042645 351 V 351 (427)
Q Consensus 351 ~ 351 (427)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 26
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=2e-08 Score=99.86 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHhcc-----------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
..++|++..+++|.+++.. +..+.+.|+|++|+||||+|+.+++.. . + .++.++.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~--~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G--Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T--C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C--C-CEEEEeCCC
Confidence 4689999999999999864 134789999999999999999999886 1 1 234445444
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH--HhcCCcEEEEEeccCCccc-----ccccccCCCCCCCCcEEE
Q 042645 211 DLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK--TMRNRKIVLLLDDIWELFD-----LAQVGLPVPSRASASKVV 283 (427)
Q Consensus 211 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~L~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~gs~Ii 283 (427)
..... ++...+....... +.......... ...+++.+|+||+++.... +..+...+.. .+..||
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iI 183 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLI 183 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEE
Confidence 33332 2222222111000 00000000000 1235789999999976522 1222222211 223455
Q ss_pred EecCChh---HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH-HHHH
Q 042645 284 FTTREFE---VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA-LITV 351 (427)
Q Consensus 284 vTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla-i~~~ 351 (427)
+++.+.. +.........+.+++++.++..+++...+.......+++ ....|++.++|.+.. +..+
T Consensus 184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~---~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN---VIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT---HHHHHHHHTTTCHHHHHHHH
T ss_pred EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHcCCcHHHHHHHH
Confidence 5554322 222223345689999999999999988764333223333 378899999995554 4444
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.80 E-value=8.2e-08 Score=93.32 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=106.9
Q ss_pred CccccchhhH---HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHH
Q 042645 148 PTVVGMQSTL---DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~ 223 (427)
..++|.+..+ ..|...+..+..+.+.|+|++|+||||||+.+++.. ...| +.++.. ..... ++.++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f-----~~l~a~~~~~~~-ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADV-----ERISAVTSGVKE-IREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEE-----EEEETTTCCHHH-HHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCe-----EEEEeccCCHHH-HHHHHH
Confidence 4689999888 778888888777889999999999999999999886 2222 222211 11111 111111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEE-ecCChhH---HhhcC
Q 042645 224 KIGLYNESWDNKSFDEKAQEIF-KTMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVF-TTREFEV---CGLMD 296 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~Iiv-TtR~~~v---~~~~~ 296 (427)
... ....+++.+|+||+++... ....+...+.. + ...+|. ||.+... .....
T Consensus 97 -------------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 97 -------------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp -------------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred -------------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhC
Confidence 111 1124678999999998652 23333333332 1 233333 5555321 12223
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCC----CCCCCHHHHHHHHHHHcCCCchHHHHHHHH
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDIL----DSHPDIPELAETVARECGGLPLALITVGRA 354 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~----~~~~~~~~~~~~i~~~~~G~Plai~~~~~~ 354 (427)
-...+.+.+++.++...++.+.+..... ....-..+..+.|++.++|.+..+..+...
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3357889999999999999987643110 111223466888999999998876654433
No 28
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=2.4e-08 Score=94.49 Aligned_cols=195 Identities=9% Similarity=0.085 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHh-ccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC-C--CCcE--------------------E
Q 042645 148 PTVVGMQSTLDRVWRCL-TEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP-N--DFDF--------------------V 203 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 203 (427)
..++|.+..++.+.+++ ..+..+.+.|+|++|+||||+++.+++...... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 46899999999999998 666555599999999999999999988541111 1 0000 0
Q ss_pred EEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCCCCCc
Q 042645 204 IWEVVSRDL-QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSRASAS 280 (427)
Q Consensus 204 ~wv~~~~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~gs 280 (427)
+.+..+... ......++++..+..... ..... .+. .+.+++-++|||++..... ...+...+.....++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTE
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCC
Confidence 111111000 000012222222211000 00000 000 0234677999999987421 222322222223457
Q ss_pred EEEEecCChh-H-HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHH
Q 042645 281 KVVFTTREFE-V-CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVG 352 (427)
Q Consensus 281 ~IivTtR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~ 352 (427)
.+|++|.+.. + .........+.+.+++.++..+++...+...+...+. .+....|++.++|.+..+..+.
T Consensus 166 ~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 166 RLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 7877776532 2 1222233678999999999999999876433211120 2457889999999998776554
No 29
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.75 E-value=1.3e-07 Score=88.94 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..++|++..++.+..++.. ...+.+.|+|++|+|||+||+.+++.. ...| +.++.+.....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~-------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKS-------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSH--------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccch--------
Confidence 4689999999999888863 345678999999999999999998876 2222 22332221111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCC------------------CCCCCcEE
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVP------------------SRASASKV 282 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~------------------~~~~gs~I 282 (427)
......+.. ..+..+|+||+++.... ...+...+. ...++..+
T Consensus 95 ---------------~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 95 ---------------GDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ---------------HHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ---------------hHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 24567899999876421 111111110 01113456
Q ss_pred EEecCChhH-H-hhcC-CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHH
Q 042645 283 VFTTREFEV-C-GLMD-AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGR 353 (427)
Q Consensus 283 ivTtR~~~v-~-~~~~-~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~ 353 (427)
|.+|..... . .... ....+.+++++.++...++.+.+...... ...+..+.|++.+.|+|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 666655332 1 1111 23578999999999999998876432211 1245678889999999976655443
No 30
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.72 E-value=7.5e-07 Score=80.88 Aligned_cols=192 Identities=17% Similarity=0.119 Sum_probs=104.2
Q ss_pred CccccchhhHHHHHHH-------hc---cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHH
Q 042645 148 PTVVGMQSTLDRVWRC-------LT---EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKI 217 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~-------l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l 217 (427)
..++|....++++... +. ....+.+.|+|++|+|||+||+.+++.. ...| +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~------ 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDK------ 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGG------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHH------
Confidence 4577887776666652 32 3456789999999999999999999876 2221 22222210
Q ss_pred HHHHHHHhCCCCCCCCCCCHH----HHHHHHHHHhcCCcEEEEEeccCCcc-----------c-ccccccCCCC---CCC
Q 042645 218 QESIAKKIGLYNESWDNKSFD----EKAQEIFKTMRNRKIVLLLDDIWELF-----------D-LAQVGLPVPS---RAS 278 (427)
Q Consensus 218 ~~~i~~~l~~~~~~~~~~~~~----~~~~~l~~~L~~k~~LlVlDdv~~~~-----------~-~~~~~~~l~~---~~~ 278 (427)
+ ...... .....+......++.+|+|||++... . ...+...+.. ...
T Consensus 101 -------~-------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 166 (272)
T 1d2n_A 101 -------M-------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGR 166 (272)
T ss_dssp -------C-------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTC
T ss_pred -------h-------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCC
Confidence 0 011111 12222233334678999999986531 0 1111111211 222
Q ss_pred CcEEEEecCChhHHhh---cCC-CcceeccCCCh-HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC------chH
Q 042645 279 ASKVVFTTREFEVCGL---MDA-HKSFKVECLGY-EDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL------PLA 347 (427)
Q Consensus 279 gs~IivTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~------Pla 347 (427)
...||.||........ ... ...+.+++++. ++...++.+... . ..+....|++.+.|. +-+
T Consensus 167 ~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 167 KLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp EEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHH
T ss_pred CEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHH
Confidence 3446667766543222 111 34678899988 777777665421 1 134578888888883 333
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhhc
Q 042645 348 LITVGRAMASKKAPREWAHAIEVLRSS 374 (427)
Q Consensus 348 i~~~~~~L~~~~~~~~w~~~l~~l~~~ 374 (427)
+..+ ...........+..+++.+...
T Consensus 239 ~~~l-~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 239 LMLI-EMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHH-HHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHH-HHHhhhchHHHHHHHHHHHHHc
Confidence 3333 2333333445666666666553
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.69 E-value=7e-08 Score=91.81 Aligned_cols=198 Identities=13% Similarity=0.079 Sum_probs=105.0
Q ss_pred CCccccchhhHHH---HHHHhccCC--CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe----CCCCCHHHH
Q 042645 147 PPTVVGMQSTLDR---VWRCLTEEP--VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV----SRDLQLGKI 217 (427)
Q Consensus 147 ~~~~vGR~~~~~~---l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~----~~~~~~~~l 217 (427)
...|+|++..+.. +.+.+..+. .+.+.|+|++|+|||++|+.+++... .... .+.+.. +........
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~-~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG---PDTP-FTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC---SSCC-EEEEEGGGGSCSSSCHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc---ccCC-cccccchhhhhcccchhHH
Confidence 3578999988766 455555543 35899999999999999999999872 2111 122221 222334444
Q ss_pred HHHHHHHhC-C--------------------CC-------CCCCCCCHHHHHHHHHHHh-----cCC----cEEEEEecc
Q 042645 218 QESIAKKIG-L--------------------YN-------ESWDNKSFDEKAQEIFKTM-----RNR----KIVLLLDDI 260 (427)
Q Consensus 218 ~~~i~~~l~-~--------------------~~-------~~~~~~~~~~~~~~l~~~L-----~~k----~~LlVlDdv 260 (427)
+........ . .. ..........+...+.... .++ +.+|+||++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi 198 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEV 198 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESG
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhc
Confidence 444433311 0 00 0000011122222222221 133 459999999
Q ss_pred CCcc--cccccccCCCCCCCCcEEEEecCC-------------hhH-HhhcCCCcceeccCCChHHHHHHHHHHhCCCCC
Q 042645 261 WELF--DLAQVGLPVPSRASASKVVFTTRE-------------FEV-CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDIL 324 (427)
Q Consensus 261 ~~~~--~~~~~~~~l~~~~~gs~IivTtR~-------------~~v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~ 324 (427)
+... ....+...+...... .++++|.. ..+ .....-...+.+++++.++..+++...+.....
T Consensus 199 ~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 199 HMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred cccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 8652 122222222222222 34444431 001 111112234799999999999999987743321
Q ss_pred CCCCCHHHHHHHHHHHcC-CCchHHHHHH
Q 042645 325 DSHPDIPELAETVARECG-GLPLALITVG 352 (427)
Q Consensus 325 ~~~~~~~~~~~~i~~~~~-G~Plai~~~~ 352 (427)
.-..+..+.|++.+. |.|..+..+.
T Consensus 278 ---~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 278 ---EMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp ---CBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 122456888999998 8887665443
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.66 E-value=1.5e-06 Score=80.87 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=103.7
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++... .. ..+.++.+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CC---cEEEEEhHHHHh--
Confidence 4688999988888877631 1346799999999999999999998761 11 223333332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCC---CCCCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPV---PSRASA 279 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~g 279 (427)
.............+...-..++.+|+||+++.... ...+...+ .....+
T Consensus 85 ---------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 ---------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ---------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ---------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00122222222222233346789999999976411 01111111 111234
Q ss_pred cEEEEecCChhH-----HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc-hHHHHHHH
Q 042645 280 SKVVFTTREFEV-----CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP-LALITVGR 353 (427)
Q Consensus 280 s~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P-lai~~~~~ 353 (427)
..||.||..... .. .....+.++..+.++-.+++...+....... .......|++.+.|.. -.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 455556644321 12 2335678899999999999998875432111 2355788999999874 44555543
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.66 E-value=2.7e-07 Score=83.22 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHhc---c---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT---E---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.|.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHhh-
Confidence 468999988877766542 1 234568899999999999999999887 222 233333321110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc-------------c----ccccccCCCC--C
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF-------------D----LAQVGLPVPS--R 276 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~----~~~~~~~l~~--~ 276 (427)
............+.......+.+|+|||++... . ...+...+.. .
T Consensus 79 ----------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 79 ----------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ----------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ----------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 011111222223333334568999999998641 0 1111111111 1
Q ss_pred CCCcEEEEecCChhHH--hhcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHH
Q 042645 277 ASASKVVFTTREFEVC--GLMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALIT 350 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~--~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~ 350 (427)
..+..||.||...... .... ....+.++..+.++-.+++...+.... ...........+++.+.|.+- .+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 2345566666554321 1111 224678899999999999988764322 112222335788888988764 4544
Q ss_pred HH
Q 042645 351 VG 352 (427)
Q Consensus 351 ~~ 352 (427)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.66 E-value=1e-07 Score=88.38 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=85.3
Q ss_pred ccccchhhHHHHHHHhc---------------cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC
Q 042645 149 TVVGMQSTLDRVWRCLT---------------EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ 213 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 213 (427)
.++|.+..++.|.+.+. ......+.|+|++|+|||++|+.+++.... .......-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH--
Confidence 47899988888876653 234457999999999999999988877622 111111112222211
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc-----------cccccccCCCCCCCCcEE
Q 042645 214 LGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF-----------DLAQVGLPVPSRASASKV 282 (427)
Q Consensus 214 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~~~~~~l~~~~~gs~I 282 (427)
.+ ... ............+... +..+|+||+++... ....+...+.....+..|
T Consensus 109 --~l--------~~~---~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 109 --DL--------VGQ---YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp --GT--------CCS---STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred --Hh--------hhh---cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 00 000 0111112222222222 45699999998441 122232333333445677
Q ss_pred EEecCChhH----------HhhcCCCcceeccCCChHHHHHHHHHHhC
Q 042645 283 VFTTREFEV----------CGLMDAHKSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 283 ivTtR~~~v----------~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
|.||..... ...+ ...+.+++++.++...++...+.
T Consensus 173 i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 173 ILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 777764322 1221 25689999999999999988764
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.62 E-value=6.9e-07 Score=83.68 Aligned_cols=169 Identities=12% Similarity=0.110 Sum_probs=102.4
Q ss_pred chhhHHHHHHHhccCC-CeEEEEEecCCCcHHHHHHHHHhhccCCCC-------------------CCcEEEEEEeCCCC
Q 042645 153 MQSTLDRVWRCLTEEP-VGIVGLYGMGGVGKTTLLTQINNSFLHTPN-------------------DFDFVIWEVVSRDL 212 (427)
Q Consensus 153 R~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~~~~~ 212 (427)
.+...+.+.+.+..+. .+.+.++|++|+|||++|+.+++....... +++. .++....
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~-- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEK-- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCT--
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccc--
Confidence 3566777888887765 456999999999999999999987631110 1221 1221110
Q ss_pred CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-----cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEe
Q 042645 213 QLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-----RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFT 285 (427)
Q Consensus 213 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivT 285 (427)
.......++.. .+.+.+ .+++-++|+|+++... ....+...+.....++.+|++
T Consensus 84 ------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 84 ------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp ------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 00111222222 222222 2567899999998653 223333333333456777777
Q ss_pred cCChh-H-HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 286 TREFE-V-CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 286 tR~~~-v-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
|.+.+ + .........+.+.+++.++..+++.+... . ..+.+..+++.++|.|..+..+
T Consensus 145 t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 145 TREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----M---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----C---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred eCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 76643 2 22223345789999999999999988751 1 1344678999999999876544
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.59 E-value=5.6e-07 Score=83.88 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=103.9
Q ss_pred CccccchhhHHHHHHHhc----------c--CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT----------E--EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.|.+.+. . ...+.+.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 468999999999988872 1 134579999999999999999999886 222 2223221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCccc-------------ccccccCC---CCCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFD-------------LAQVGLPV---PSRAS 278 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~ 278 (427)
++.. .. .. ........+.. .-..++.+|+||+++.... ...+...+ .....
T Consensus 86 ~l~~----~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DLVS----KW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HHHT----TT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HHhh----cc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1110 00 01 11222333332 3345778999999975421 11111111 12233
Q ss_pred CcEEEEecCChhH-----HhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-chHHHHHH
Q 042645 279 ASKVVFTTREFEV-----CGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL-PLALITVG 352 (427)
Q Consensus 279 gs~IivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 352 (427)
+..||.||..... .. .....+.++..+.++-.+++...+...... ........|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~---~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCV---LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCC---CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556656665322 22 223467888999999999999987643211 1234578899999884 54555444
No 37
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.58 E-value=9.1e-07 Score=83.68 Aligned_cols=179 Identities=13% Similarity=0.096 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhcc-
Confidence 4689999999999887742 345689999999999999999999876 22 2334444321110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCccc-------------ccccccCCC----CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFD-------------LAQVGLPVP----SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~----~~~ 277 (427)
... ........+.. .-..++.+|+||+++.... ...+...+. ...
T Consensus 157 ----------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 157 ----------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ----------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ----------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 000 11222222222 2235789999999964311 111211111 112
Q ss_pred CCcEEEEecCChh-HHh-hc-CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CchHHHHHHH
Q 042645 278 SASKVVFTTREFE-VCG-LM-DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG-LPLALITVGR 353 (427)
Q Consensus 278 ~gs~IivTtR~~~-v~~-~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~~~ 353 (427)
.+..||.||.... +.. .. .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.+..+..
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3445555665432 111 11 122467888999999999998876432211 124567889999999 5556665544
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.58 E-value=2.7e-07 Score=86.73 Aligned_cols=176 Identities=15% Similarity=0.186 Sum_probs=104.9
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD-FVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.|...+..++.+.+.++|++|+||||+|+.+++... . ..+. .+..++.+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~-~-~~~~~~~~~~~~~~~~~~------------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY-G-KNYSNMVLELNASDDRGI------------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH-T-TSHHHHEEEECTTSCCSH------------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc-C-CCccceEEEEcCcccccH------------
Confidence 34689999999999988887666699999999999999999998862 1 1111 1222222221111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHh------cCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCChh-H-HhhcC
Q 042645 227 LYNESWDNKSFDEKAQEIFKTM------RNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREFE-V-CGLMD 296 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L------~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~~-v-~~~~~ 296 (427)
+.....+.... .+.+-++|+|+++... ....+...+......+.+|++|.... + .....
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 11111121111 2346799999997542 12222222222234566777765432 1 11112
Q ss_pred CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
....+.+.+++.++..+.+...+....... ..+..+.|++.++|.+.-+..+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~~~~~~~i---~~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKL---SPNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHTTTCCB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 234678999999999998888763322112 2355788999999988754433
No 39
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.58 E-value=1.9e-06 Score=82.56 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=101.8
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.|.+.+.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999988731 234689999999999999999998876 21 223333322111
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCC---CC-CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPV---PS-RAS 278 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~-~~~ 278 (427)
.. ...........+...-...+.+|+||+++.... ...+...+ .. ...
T Consensus 187 ~~---------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KY---------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cc---------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 00 011112222222222235678999999975410 00111111 11 122
Q ss_pred CcEEEEecCChhH-H-hhc-CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHHHHH
Q 042645 279 ASKVVFTTREFEV-C-GLM-DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALITVGR 353 (427)
Q Consensus 279 gs~IivTtR~~~v-~-~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~~~~ 353 (427)
...||.||..... . ... .....+.+...+.++..+++...+..... .-..+....|++.+.|..- .+..+..
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455556654321 1 111 12245788999999999999988754331 1224567889999998655 5555543
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.57 E-value=1.2e-06 Score=82.82 Aligned_cols=177 Identities=15% Similarity=0.110 Sum_probs=102.4
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.++.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999999887731 123468999999999999999999987 221 2223221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCC---CCCCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPV---PSRASA 279 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l---~~~~~g 279 (427)
++.. .. ...........+...-..++.+|+||+++.... ...+...+ .....+
T Consensus 119 ~l~~----~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 DLVS----KW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp HHHS----CC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred HHhh----hh-------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 00 111222222222223346789999999985421 11111111 111234
Q ss_pred cEEEEecCChh-----HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-chHHHHHH
Q 042645 280 SKVVFTTREFE-----VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL-PLALITVG 352 (427)
Q Consensus 280 s~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 352 (427)
..||.||.... +.. .....+.++..+.++-.+++...+....... .......|++.+.|. +-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55565665432 122 2335678899999999999998875432111 134578899999984 44455444
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.55 E-value=4.9e-07 Score=84.38 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHhccCCC-eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPV-GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG 226 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~ 226 (427)
..++|.+..++.+.+++..+.. +++.++|++|+|||++|+.+++.. . ..++.++.+.. .. ..+...+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~-~~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KI-DFVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CH-HHHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CH-HHHHHHHHHHH
Confidence 5689999999999999987643 567778889999999999999876 1 22344443331 22 22222221110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc---cccccccCCCCCCCCcEEEEecCChhH-H-hhcCCCcce
Q 042645 227 LYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF---DLAQVGLPVPSRASASKVVFTTREFEV-C-GLMDAHKSF 301 (427)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~gs~IivTtR~~~v-~-~~~~~~~~~ 301 (427)
... ...+++.+|++||++... ....+...+.....+..+|+||....- . ........+
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i 160 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVI 160 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEE
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEE
Confidence 000 012477899999998754 222232222222245678887776431 0 011112468
Q ss_pred eccCCChHHHHHHH-------HHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH
Q 042645 302 KVECLGYEDAWRLF-------EEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM 355 (427)
Q Consensus 302 ~l~~L~~~e~~~lf-------~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L 355 (427)
.+++++.++-.+++ ...+...+...++ .+....|++.++|.+..+......+
T Consensus 161 ~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999988843332 2222222211211 2568889999999887655444444
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.55 E-value=4.4e-07 Score=84.68 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=99.4
Q ss_pred Cccc-cchh--hHHHHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVV-GMQS--TLDRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~v-GR~~--~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..|+ |... ....+...+..+ ....+.|+|++|+||||||+.+++..... . ..+++++. .++...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEH------HHHHHHHH
Confidence 3454 5433 334444444443 34679999999999999999999876221 1 22344443 33334443
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc---c-cccccCCCC-CCCCcEEEEecCChh-------
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD---L-AQVGLPVPS-RASASKVVFTTREFE------- 290 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~---~-~~~~~~l~~-~~~gs~IivTtR~~~------- 290 (427)
..+... ... .+...+ .++.+|+|||++.... + ..+...+.. ...+..||+||.+..
T Consensus 82 ~~~~~~-------~~~----~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~ 149 (324)
T 1l8q_A 82 EHLKKG-------TIN----EFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVS 149 (324)
T ss_dssp HHHHHT-------CHH----HHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSC
T ss_pred HHHHcC-------cHH----HHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhh
Confidence 333210 111 122222 2367999999976532 1 222222211 123556888776432
Q ss_pred --HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHH
Q 042645 291 --VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALIT 350 (427)
Q Consensus 291 --v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~ 350 (427)
+...+.....+.+++ +.++...++...+....... ..+....|++.+ |.+-.+..
T Consensus 150 ~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l~~ 206 (324)
T 1l8q_A 150 DRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVREIEG 206 (324)
T ss_dssp HHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHHHHHH
T ss_pred hHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHHHHHH
Confidence 222233335689999 99999999998874322222 245678889999 87765433
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.52 E-value=2.8e-06 Score=82.69 Aligned_cols=180 Identities=14% Similarity=0.143 Sum_probs=101.7
Q ss_pred CccccchhhHHHHHHHhc------------cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT------------EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++... . .. ++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~---~--~~--~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN---N--ST--FFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC---S--SE--EEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC---C--CC--EEEEeHH----
Confidence 468999999999988763 12346799999999999999999998761 1 11 2333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCCC---CCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVPS---RASA 279 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~---~~~g 279 (427)
++.... .+. ...... ..+...-..++.+|+||+++.... ...+...+.. ...+
T Consensus 203 ~l~~~~---~g~-----~~~~~~---~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKW---LGE-----SEKLVK---NLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHH---HHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhh---cch-----HHHHHH---HHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111110 110 111111 122222235789999999986411 1112122211 2344
Q ss_pred cEEEEecCChhHH--hhc-CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-chHHHHHH
Q 042645 280 SKVVFTTREFEVC--GLM-DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL-PLALITVG 352 (427)
Q Consensus 280 s~IivTtR~~~v~--~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~~ 352 (427)
..||.||...... ... .....+.++..+.++-..+|...+....... .......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666666553221 111 2234677888899999999988875432111 134578899999994 44555444
No 44
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=2.9e-06 Score=78.04 Aligned_cols=177 Identities=13% Similarity=0.098 Sum_probs=102.8
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.|.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999999887732 235689999999999999999999876 22 223333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCcccc-------------cccc---cCCCCC--
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFDL-------------AQVG---LPVPSR-- 276 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~~-------------~~~~---~~l~~~-- 276 (427)
. ...........+.. ....++.+|+||+++....- ..+. ..++..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 01112233333322 33457889999999754210 0011 011111
Q ss_pred CCCcEEEEecCChh-----HHhhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch-HHHH
Q 042645 277 ASASKVVFTTREFE-----VCGLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL-ALIT 350 (427)
Q Consensus 277 ~~gs~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl-ai~~ 350 (427)
..+..||.||.... +... ....+.++..+.++...++...+..... +-.......|++.+.|.+- .+..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHH
Confidence 12345666666532 1221 2345778888888888888877643221 1123557889999999886 5545
Q ss_pred HHH
Q 042645 351 VGR 353 (427)
Q Consensus 351 ~~~ 353 (427)
+..
T Consensus 232 l~~ 234 (297)
T 3b9p_A 232 LAK 234 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 45
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.47 E-value=1.8e-07 Score=79.47 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=41.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++||+.+++.+.+.+.....+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988767788999999999999999998876
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.41 E-value=5.7e-06 Score=76.22 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=101.0
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.+++|.+..+++|.+++.. ...+.+.|+|++|+|||+||+.+++.. .. ..+.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v~------~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISIK------G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEEC------H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEEE------h
Confidence 4689999988888877642 345679999999999999999999876 22 122222 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SR 276 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 276 (427)
.++.... .+. ........+.......+.+|+||+++.... ...+...+. ..
T Consensus 83 ~~l~~~~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2333222 121 112223333334446789999999974210 111111111 11
Q ss_pred CCCcEEEEecCChhHH-h-hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH
Q 042645 277 ASASKVVFTTREFEVC-G-LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA 347 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~-~-~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 347 (427)
..+..||.||...... . ... -...+.++..+.++-.+++...+.......+.+ ...++..+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 2345666677654321 1 112 234678999999999999988775433222223 34566778887754
No 47
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.39 E-value=2e-06 Score=79.24 Aligned_cols=147 Identities=11% Similarity=0.086 Sum_probs=90.8
Q ss_pred cchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC-CCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCC
Q 042645 152 GMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP-NDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 152 GR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~ 229 (427)
|-++.++.|.+.+..++.+...++|++|+||||+|..+.+...... .+.+. ..+..+. .....+ .+++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHhhcc
Confidence 4456777888888877788999999999999999999987531111 23333 4444332 222222 233444433211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcc--cccccccCCCCCCCCcEEEEecCCh-hHHhhcCCCcceeccCC
Q 042645 230 ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELF--DLAQVGLPVPSRASASKVVFTTREF-EVCGLMDAHKSFKVECL 306 (427)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~gs~IivTtR~~-~v~~~~~~~~~~~l~~L 306 (427)
..+++-++|+|+++... ..+.+...+......+.+|++|.+. .+...+... .+++.++
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 12456799999998652 2344444443334567777776543 333333344 8999999
Q ss_pred ChHHHHHHHHHHh
Q 042645 307 GYEDAWRLFEEKV 319 (427)
Q Consensus 307 ~~~e~~~lf~~~~ 319 (427)
++++..+++.+..
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 48
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=2.2e-05 Score=74.26 Aligned_cols=171 Identities=14% Similarity=0.178 Sum_probs=99.7
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+.+++.. ... .+.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc-
Confidence 3567888888888776531 245679999999999999999999987 222 23333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCccc----------------ccccccCCC--C
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--S 275 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~ 275 (427)
...+.+ +..+..+.. .-...+++|++|+++.... ...+...+. .
T Consensus 221 ----------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 001111 222222322 3346799999999985411 011111111 1
Q ss_pred CCCCcEEEEecCChhHH--hhc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 276 RASASKVVFTTREFEVC--GLM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
...+..||.||...+.. ..+ .-...+.++..+.++-.++|+.+........+-+ ...|++.+.|.--
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG 355 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG 355 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence 23344556666543321 111 2346788999999999999988775443222233 5677888888654
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.35 E-value=3.3e-06 Score=82.76 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCC--CCC-c-EEEEEEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTP--NDF-D-FVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
..++||+.+++.+++.+.......+.|+|++|+|||++|+.+++...... ... . .++.++++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 35899999999999999876666788999999999999999998762211 011 1 11222222 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh-------hcC
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG-------LMD 296 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~-------~~~ 296 (427)
.. .+.....+...+...-..++.+|++| ........+...+. ....++|.+|....... ...
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~ 315 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALER 315 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHH
Confidence 00 00000112222223333577899999 12222222333332 12345665555443111 111
Q ss_pred CCcceeccCCChHHHHHHHHHHhC
Q 042645 297 AHKSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 297 ~~~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
-...+.+++.+.++...++.....
T Consensus 316 Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 316 RFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hCccceeCCCCHHHHHHHHHHHHH
Confidence 123589999999999999997664
No 50
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.28 E-value=1.8e-05 Score=73.92 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHhcc-----CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-----EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ..+ +...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~s-g~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTS-GPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEE-TTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEe-chHh----------
Confidence 4578988888777666643 234679999999999999999999887 22211 111 1110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCCCCC--------C----------CCcEE
Q 042645 223 KKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPVPSR--------A----------SASKV 282 (427)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l~~~--------~----------~gs~I 282 (427)
....++.. +...+ .++.++++|+++.... .+.+...+... . ....+
T Consensus 88 ------------~~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 01111111 11112 2345778888765321 11111000000 0 11122
Q ss_pred E-EecCChhHHhhcC--CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHHHHHH----
Q 042645 283 V-FTTREFEVCGLMD--AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITVGRAM---- 355 (427)
Q Consensus 283 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~~~~L---- 355 (427)
+ .|++...+...+. ....+.+++.+.++..+++.+.+..... ....+.+..|++.+.|.|..+..+...+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2 3444433322211 1234789999999999999987643221 2224668999999999998665443322
Q ss_pred --cCC--CChHHHHHHHHHHhhccccCCCChHHHHHHHhhhcCCCCC
Q 042645 356 --ASK--KAPREWAHAIEVLRSSASKFSGMEKKALSRLKFSYDFLPS 398 (427)
Q Consensus 356 --~~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~ 398 (427)
... -+.+.-+.++..+......++..+..++..+..+|..=|.
T Consensus 231 ~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 277 (334)
T 1in4_A 231 TVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPV 277 (334)
T ss_dssp HHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCB
T ss_pred HHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcc
Confidence 122 2455556666555432212222223566666666654343
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.7e-05 Score=74.68 Aligned_cols=171 Identities=15% Similarity=0.236 Sum_probs=98.3
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+.+++.. ... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3567888888888776531 245789999999999999999999987 222 23333332111
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH-HHhcCCcEEEEEeccCCccc----------------ccccccCCC--C
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIF-KTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--S 275 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~ 275 (427)
...+.+ ...+..+. ..-...+++|++|+++.... ...+...+. .
T Consensus 254 ----------------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 001111 22222222 23346899999999985311 011111111 1
Q ss_pred CCCCcEEEEecCChhHHh--hcCC---CcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 276 RASASKVVFTTREFEVCG--LMDA---HKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v~~--~~~~---~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
...+..||.||....... .+.. ...|.++..+.++-.++|+.+..........+ ...|++.+.|.--
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG 388 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG 388 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence 233456677776543211 1112 24678888888888889887764433222233 4667788888654
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.27 E-value=2.4e-06 Score=90.17 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCC--CCC--CcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHT--PND--FDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~~--f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
..++||+.++.++++.+.....+.+.|+|++|+|||++|+.+++..... ... -..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 4589999999999999987666678999999999999999999876211 111 12234443321100
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc--CCcEEEEEeccCCccc-------cc---ccccCCCCCCCCcEEEEecCChhH
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTMR--NRKIVLLLDDIWELFD-------LA---QVGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~-------~~---~~~~~l~~~~~gs~IivTtR~~~v 291 (427)
+.. ...........+...+. +++.+|++|+++.... ++ .+...+. ..+..+|.+|.....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEY 311 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHH
Confidence 000 01122333333333332 3689999999976421 11 1111121 123445555544332
Q ss_pred H------hhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 292 C------GLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 292 ~------~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
. ....-...+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111122458899999999999997543
No 53
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.26 E-value=3.2e-06 Score=76.49 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=91.0
Q ss_pred CccccchhhHHHHHHHhcc------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
..++|.+..++.+.+.+.. ...+-+.|+|++|+|||+||+.+++... ..|- .+..+.-.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~---~v~~~~~~~~- 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFF---SMGGSSFIEM- 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT---CCCC---CCCSCTTTTS-
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEE---EechHHHHHh-
Confidence 5689999888777766531 1234488999999999999999998862 2221 1111110000
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-----------------ccccccCCCC---
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-----------------LAQVGLPVPS--- 275 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-----------------~~~~~~~l~~--- 275 (427)
..+. ....... .+......++.+|+|||++.... ...+...+..
T Consensus 84 --------~~~~-----~~~~~~~---~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 84 --------FVGL-----GASRVRD---LFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp --------CSSS-----CSSSSST---THHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred --------hcch-----HHHHHHH---HHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 0000 0011111 12222234678999999965311 1222222211
Q ss_pred CCCCcEEEEecCChhHH--hhcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 276 RASASKVVFTTREFEVC--GLMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v~--~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
......||.||...... .... ....+.++..+.++-.+++...+.......... ...|++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVN----LQEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCC----TTTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccC----HHHHHHHcCCCCH
Confidence 11224566666654321 1111 234678889999999999987764332111122 2335666777654
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.25 E-value=1.5e-05 Score=78.19 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=102.0
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
..++|.+..+++|.+.+.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 3579999999999887742 345579999999999999999998876 22 22333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCC--CCCCC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVP--SRASA 279 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~g 279 (427)
++. ..+ ...........+.....+++.+|+||+++.... ...+...+. ....+
T Consensus 273 -~l~----~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -EIM----SKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -HHH----TSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -Hhh----hhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 111 000 111122233334444457789999999953211 111111111 12234
Q ss_pred cEEEEecCChh-HHhhc----CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC-chHHHHH
Q 042645 280 SKVVFTTREFE-VCGLM----DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL-PLALITV 351 (427)
Q Consensus 280 s~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~-Plai~~~ 351 (427)
..||.||.... +...+ .....+.+...+.++-.+++...+.......+.. ...+++.+.|. +-.+..+
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 45565665542 21111 1234688999999999999998875443222233 45677778775 4444444
No 55
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.23 E-value=1.4e-06 Score=70.97 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|+...+.++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 333457899999999999999998875
No 56
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=3.1e-05 Score=69.46 Aligned_cols=177 Identities=16% Similarity=0.116 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHh---cc---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCL---TE---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..++++.+.+ .. ...+-+.|+|++|+||||||+.+++.. ...| +.++.+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 46899988777776543 21 123468899999999999999999876 2222 3333221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 277 (427)
.............+.......+.++++|+++.... ...+...+. ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00112223333334444445678999999853211 001111111 112
Q ss_pred CCcEEEEecCChh-HHhh-cC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCC-CchHHHHH
Q 042645 278 SASKVVFTTREFE-VCGL-MD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGG-LPLALITV 351 (427)
Q Consensus 278 ~gs~IivTtR~~~-v~~~-~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G-~Plai~~~ 351 (427)
.+..||.||.... +... .. -...+.++..+.++-.+++.............. ...++..+.| .+--+..+
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHH
Confidence 3455666665543 2111 11 134567888888888888887764332222222 3456777888 66555433
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.20 E-value=1.4e-05 Score=83.21 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=84.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCC--CCcEEEEEEeCCCCCHHHHHHHHHHHh
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN--DFDFVIWEVVSRDLQLGKIQESIAKKI 225 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f~~~~wv~~~~~~~~~~l~~~i~~~l 225 (427)
..++||+.+++++...+......-+.|+|++|+|||++|+.+++....... .....-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 458999999999999998776667899999999999999999987622111 001111111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh-------hcCCC
Q 042645 226 GLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG-------LMDAH 298 (427)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~-------~~~~~ 298 (427)
+... .+.....+...+......++.+|++|. .......+...+. ....++|.||....... ...-.
T Consensus 245 g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf 317 (758)
T 3pxi_A 245 GTKY---RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRF 317 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSE
T ss_pred cccc---cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhC
Confidence 1000 011111222333333446788999992 2122222333332 22355666665544211 00111
Q ss_pred cceeccCCChHHHHHHHHHHhC
Q 042645 299 KSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 299 ~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
..+.+++.+.++..+++.....
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHH
Confidence 4589999999999999987654
No 58
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4e-05 Score=73.49 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=97.8
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+.+++.. ... .+.++.+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 578888888888776521 356789999999999999999999987 222 23333222110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 277 (427)
...+.+...+...+...-...+++|++|+++.... ...+...+. ...
T Consensus 282 ---------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 ---------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp ---------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred ---------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 00111112222222233346899999999975311 001111111 122
Q ss_pred CCcEEEEecCChhHH--hhc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 278 SASKVVFTTREFEVC--GLM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 278 ~gs~IivTtR~~~v~--~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
.+..||.||...... ..+ .-...+.++..+.++-.++|+.+.........-+ ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 344556666543321 111 2345788888899999999988775443222223 466788888864
No 59
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.18 E-value=1.1e-05 Score=74.35 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHhcc--------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999887754 234578899999999999999999887
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=3.9e-05 Score=72.82 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=96.7
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|-++.+++|.+.+.- ...+-|.++|++|+|||.||+.+++.. ... .+.++.+.-.+
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~s-- 254 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELIQ-- 254 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGCC--
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhhh--
Confidence 467888888888776531 245779999999999999999999987 222 22233221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCccc----------------ccccccCCC--CC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SR 276 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 276 (427)
..... .+..+..+.. .-...+++|++|+++.... ...+...+. ..
T Consensus 255 ---------------k~vGe-sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 ---------------KYLGD-GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp ---------------SSSSH-HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred ---------------ccCch-HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 00111 1223333333 2346799999999975311 001111111 12
Q ss_pred CCCcEEEEecCChhHHh--hcCC---CcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCch
Q 042645 277 ASASKVVFTTREFEVCG--LMDA---HKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPL 346 (427)
Q Consensus 277 ~~gs~IivTtR~~~v~~--~~~~---~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pl 346 (427)
..+..||.||....... .+.+ ...+.++.-+.++-.++|+.+........+.+ ...|++.+.|.--
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfSG 389 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLSG 389 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCCH
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCCH
Confidence 23445666665544311 1111 24578888888888899988775443222333 4667778887643
No 61
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.09 E-value=4.7e-05 Score=74.15 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHhc---cC---------CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT---EE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..++++.+.+. .+ ..+-|.|+|++|+|||+||+.+++.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468899887777765542 21 23458899999999999999999876 2222 23333221110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SRA 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~~ 277 (427)
............+.......+.+|+||+++.... ...+...+. ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0011112222334444456899999999975311 111111111 112
Q ss_pred CCcEEEEecCChhHHh--hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 278 SASKVVFTTREFEVCG--LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 278 ~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
.+..||.||....... ... -...+.++..+.++-.++++.++.......+.+ ...|++.+.|+.
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 3456666776654321 122 223678888888888888887765433222222 455788899987
No 62
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.5e-05 Score=73.81 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|-++.+++|.+.+.- ...+-|.++|++|+|||+||+.+++.. ... .+.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 3578899888888776531 245679999999999999999999987 222 23333332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCC--CC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVP--SR 276 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~--~~ 276 (427)
...+.+...+...+...-...+++|++|+++.... ...+...+. ..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 00111112222222233346799999999964210 011111111 12
Q ss_pred CCCcEEEEecCChhH--HhhcCC---CcceeccCCC-hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 277 ASASKVVFTTREFEV--CGLMDA---HKSFKVECLG-YEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 277 ~~gs~IivTtR~~~v--~~~~~~---~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
..+..||.||..... .....+ ...+.++.++ .++-..+|+.+........+.+ ...|++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 334556667765332 111122 2356776564 4555566766654332222223 466777888854
No 63
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.06 E-value=2.7e-06 Score=72.00 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=62.2
Q ss_pred chhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 042645 153 MQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYN 229 (427)
Q Consensus 153 R~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~ 229 (427)
.+..++.+.+++.. .....+.|+|++|+|||||++.+++......+ . .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g-~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG-I-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC-C-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC-C-eEEEE------EHHHHHHHHHHHhcCch
Confidence 34445555555433 34578999999999999999999987621111 1 12233 34455555544433211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCC--ccccc--ccccCCCC-CCCCcEEEEecCC
Q 042645 230 ESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWE--LFDLA--QVGLPVPS-RASASKVVFTTRE 288 (427)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~--~~~~~l~~-~~~gs~IivTtR~ 288 (427)
. ...... +. ++-+|||||++. ...|. .+...+.. ...|..+|+||..
T Consensus 91 -----~--~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 -----D--TKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -----C--SHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -----H--HHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 122222 22 456899999973 22332 12111111 1246678888865
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=3.4e-05 Score=80.47 Aligned_cols=154 Identities=14% Similarity=0.256 Sum_probs=90.1
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCC---CCcEEEE-EEeCCCCCHHHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN---DFDFVIW-EVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~w-v~~~~~~~~~~l~~~i~~ 223 (427)
..++||+.+++++++.|.......+.|+|++|+|||++|+.+++......- .....++ +..+. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H------
Confidence 458999999999999998776677899999999999999999887621110 1122222 11111 0
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHhc-CCcEEEEEeccCCcc--------c---ccccccCCCCCCCCcEEEEecCChhH
Q 042645 224 KIGLYNESWDNKSFDEKAQEIFKTMR-NRKIVLLLDDIWELF--------D---LAQVGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~~--------~---~~~~~~~l~~~~~gs~IivTtR~~~v 291 (427)
+. ... .....+.....+...+. .++.+|++||++... . ...+...+. ..+..+|.+|.....
T Consensus 254 -~~--~~~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 254 -LA--GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEF 327 (758)
T ss_dssp --C--CCC-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHH
T ss_pred -hc--ccc-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHH
Confidence 00 000 11233334444444443 467999999998541 1 111222232 234556666654432
Q ss_pred Hhhc-------CCCcceeccCCChHHHHHHHHHHh
Q 042645 292 CGLM-------DAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 292 ~~~~-------~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
.... .-...+.+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1111 111357899999999988887654
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.02 E-value=2.1e-05 Score=72.63 Aligned_cols=46 Identities=28% Similarity=0.474 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHhccC---------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 35789999988888877542 23579999999999999999999876
No 66
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=1.6e-05 Score=76.17 Aligned_cols=170 Identities=12% Similarity=0.155 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|-++.+++|.+.+.. ...+-|.+||++|+|||.||+.+++.. ... .+.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 3578899988888776531 245789999999999999999999987 222 23333222100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH-HhcCCcEEEEEeccCCccc----------------ccccccCCCC--
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFK-TMRNRKIVLLLDDIWELFD----------------LAQVGLPVPS-- 275 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-- 275 (427)
. ..+. .+..+..+.. .-...+++|++|+++.... ...+...+..
T Consensus 254 -------------~---~vGe-se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 -------------M---YIGE-GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -------------S---CSSH-HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -------------c---ccch-HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 0111 1222333332 2235789999999874210 0111111111
Q ss_pred CCCCcEEEEecCChhHH-h-hcC---CCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 276 RASASKVVFTTREFEVC-G-LMD---AHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 276 ~~~gs~IivTtR~~~v~-~-~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
...+..||.||...... . .+. -...+.++..+.++-.++|+.+........+-+ ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 12344555566554321 1 111 224678888888888888887664322222223 466788888854
No 67
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.98 E-value=2.6e-05 Score=76.20 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHH---hccC--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRC---LTEE--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~---l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.++.++.+... +..+ ..+-+.++|++|+|||+||+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 5789999887765544 3333 33578999999999999999999877
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.97 E-value=1.9e-05 Score=71.26 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=34.6
Q ss_pred CccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 4578999988888776643 233568899999999999999999876
No 69
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.88 E-value=4.2e-05 Score=70.44 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999998887754 344568899999999999999999865
No 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.87 E-value=0.00038 Score=69.35 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=77.7
Q ss_pred CccccchhhHHHHHHHhc------cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLT------EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
..++|-++....+.+.+. ......+.|+|++|+||||||+.++... ...| .-++++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCe---EEEEecccchhhhhhhHH
Confidence 346888877777755442 1245689999999999999999999876 2222 223333222211111111
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc------ccccccCCCCC---------------CCCc
Q 042645 222 AKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD------LAQVGLPVPSR---------------ASAS 280 (427)
Q Consensus 222 ~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~------~~~~~~~l~~~---------------~~gs 280 (427)
....+ .........+.. .....-+++||+++.... ...+...+... ....
T Consensus 155 ~~~ig--------~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 155 RTYVG--------AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp -----------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred HHHhc--------cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 11111 011111112222 222334889999986421 12222222110 0234
Q ss_pred EEEEecCChh-----HHhhcCCCcceeccCCChHHHHHHHHHHh
Q 042645 281 KVVFTTREFE-----VCGLMDAHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 281 ~IivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
.||.||.... +...+ ..+.+++++.++-..++...+
T Consensus 226 ~iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 226 LFIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 5666665432 22333 468899999999988887764
No 71
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.86 E-value=3.2e-05 Score=66.56 Aligned_cols=112 Identities=23% Similarity=0.183 Sum_probs=59.8
Q ss_pred hHHHHHHHhccC----CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 042645 156 TLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES 231 (427)
Q Consensus 156 ~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~ 231 (427)
.++.+.+++... ....+.|+|++|+|||+||+.+++... .....+++++++ .+...+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~----- 102 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQ----- 102 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC-------
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhc-----
Confidence 444555555433 126899999999999999999998873 222345555432 34444433221
Q ss_pred CCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc--ccccc--ccc-CCCCC-CCCcEEEEecCC
Q 042645 232 WDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL--FDLAQ--VGL-PVPSR-ASASKVVFTTRE 288 (427)
Q Consensus 232 ~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~--~~~-~l~~~-~~gs~IivTtR~ 288 (427)
..........+. . .-+|||||++.. ..|.. +.. .+... ..+..+|+||..
T Consensus 103 --~~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 103 --DQTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --cchHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111223333222 2 239999999653 33322 211 11111 234568888875
No 72
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.81 E-value=5.2e-05 Score=78.18 Aligned_cols=172 Identities=15% Similarity=0.143 Sum_probs=97.3
Q ss_pred ccccchhhHHHHHHHhc----c---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLT----E---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
++.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++.. ..+ .+.++.+
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~------ 272 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP------ 272 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH------
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH------
Confidence 46788888777776652 1 235679999999999999999999887 222 2333321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCC--CCCCCc
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVP--SRASAS 280 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~--~~~~gs 280 (427)
++. +. ........+...+....+..+++|+||+++.... ...+...+. ....+.
T Consensus 273 ~l~-------sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 273 EIM-------SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HHH-------SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred Hhh-------cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 111 10 0111222233333344456899999999975411 011111111 112233
Q ss_pred EEEEecCChh-HHhhc----CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchH
Q 042645 281 KVVFTTREFE-VCGLM----DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLA 347 (427)
Q Consensus 281 ~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Pla 347 (427)
.||.||...+ +-..+ .-...+.++..+.++-.++|+.+........+.+ ...|++++.|.--+
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga 409 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA 409 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence 4455555432 21111 1235688898999999999987765433223333 56678888887543
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.76 E-value=5.8e-05 Score=69.10 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999987
No 74
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.76 E-value=1.6e-05 Score=64.93 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 161 WRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 161 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+..-....+.|+|+.|+|||||++.+++..
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333333245689999999999999999999877
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.73 E-value=1.7e-05 Score=82.68 Aligned_cols=148 Identities=18% Similarity=0.194 Sum_probs=81.1
Q ss_pred CccccchhhHHHHHHHhcc-------C--CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------E--PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQ 218 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~ 218 (427)
..++|.+..++.+.+.+.. + ....+.++|++|+|||++|+.+++... ..-...+.++++.-....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechhccccc---
Confidence 4579999999888887753 1 223699999999999999999998862 222234455544321100
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc--ccccccCC-----CC------CCCCcEEEEe
Q 042645 219 ESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD--LAQVGLPV-----PS------RASASKVVFT 285 (427)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~~~~~l-----~~------~~~gs~IivT 285 (427)
......+...+. +....+|+||+++.... ...+...+ .. ......||+|
T Consensus 565 ---------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 565 ---------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ---------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 000011111111 12345999999975421 11111111 11 1234678888
Q ss_pred cCCh-----hH----Hh-----hcC-CCcceeccCCChHHHHHHHHHHh
Q 042645 286 TREF-----EV----CG-----LMD-AHKSFKVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 286 tR~~-----~v----~~-----~~~-~~~~~~l~~L~~~e~~~lf~~~~ 319 (427)
|... .+ .. ... -...+.+.+++.++...++...+
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 11 01 111 12478899999999888887654
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.59 E-value=0.0021 Score=63.00 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=91.0
Q ss_pred CccccchhhHHHHHHHh---ccC---------CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCL---TEE---------PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..+.++.+.. ... -.+-+.|+|++|+||||||+.+++.. .. ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~---~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA---RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CC---CEEEEehhHHHH--
Confidence 56899988776665543 221 12348999999999999999999876 21 223333321100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc----CCcEEEEEeccCCccc----------------ccccccCCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR----NRKIVLLLDDIWELFD----------------LAQVGLPVPS 275 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~----~k~~LlVlDdv~~~~~----------------~~~~~~~l~~ 275 (427)
.........+...++ ..+.++++|+++.... ...+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111222333333 2458999999964311 0111111211
Q ss_pred C--CCCcEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 276 R--ASASKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 276 ~--~~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
. ..+..++.||....... .. .....+.++..+.++-.++++.++.......+.. ...|+..+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1 22334555555544321 11 1234678888899888888887664322111112 456777888876
No 77
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=0.0014 Score=58.34 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=87.5
Q ss_pred CccccchhhHHHHHHHhc---c---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT---E---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..+.++.+... . .-.+-+.|+|++|+|||||++.+++.. . . ..+.++. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~---~~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEeeH------H
Confidence 467888876666654432 1 112238999999999999999999876 2 1 1222221 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCccc----------------ccccccCCCCCC-
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFD----------------LAQVGLPVPSRA- 277 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~~~- 277 (427)
.+. .. . .. ........+.+.. ...+.++++||++.... ...+...+..+.
T Consensus 84 ~~~----~~-~------~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DFV----EM-F------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHH----HS-C------TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHH----HH-H------hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 111 10 0 00 0111222233332 24578999999953210 011111121111
Q ss_pred -CCcEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 278 -SASKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 278 -~gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
...-++.||....... .. .....+.++..+.++-.++++..........+.. ...|++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 1233444555544321 11 1234678888898888888887664322122222 345777777754
No 78
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.54 E-value=0.0032 Score=56.90 Aligned_cols=170 Identities=15% Similarity=0.139 Sum_probs=88.4
Q ss_pred CccccchhhHHHHHHHhc---c---------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 148 PTVVGMQSTLDRVWRCLT---E---------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
.+++|.+..+.++.+... . .-.+-+.|+|++|+|||||++.++... . . ..+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~--~---~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C--C---CEEEecHH------
Confidence 568898877666655432 1 112238999999999999999999876 2 1 22333211
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-hcCCcEEEEEeccCCcc------------cc----cccccCCCCCCC
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKT-MRNRKIVLLLDDIWELF------------DL----AQVGLPVPSRAS 278 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~------------~~----~~~~~~l~~~~~ 278 (427)
.+. ... .. ........+.+. -...+.++++||++... .+ ..+...+..+..
T Consensus 108 ~~~----~~~-------~~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DFV----EMF-------VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HHH----HST-------TT-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HHH----HHH-------hh-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 111 100 00 011112222222 23467899999995321 00 111111221111
Q ss_pred --CcEEEEecCChhHH-----hhcCCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 279 --ASKVVFTTREFEVC-----GLMDAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 279 --gs~IivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
...++.||...... ........+.++..+.++-.+++...+.......+.. ...++..+.|+.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 22344455544331 1112335688899999988888887764322122222 445777787765
No 79
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.49 E-value=0.00059 Score=71.22 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=92.0
Q ss_pred ccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 149 TVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
+++|.+..+++|.+++.. .....|.|+|++|+||||||+.+++.. ...| +.++.+
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~------ 272 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP------ 272 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH------
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch------
Confidence 478999988888887642 234579999999999999999998876 2222 333321
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc-------------ccccccCCCC--CCCCc
Q 042645 216 KIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD-------------LAQVGLPVPS--RASAS 280 (427)
Q Consensus 216 ~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~gs 280 (427)
++ .... .......+...+.......+.++++|+++.... ...+...+.. ...+.
T Consensus 273 ~l--------~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 273 EI--------MSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HH--------SSSS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred Hh--------hhhh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 11 0000 111112222233333345789999999954311 0111111111 12234
Q ss_pred EEEEecCChh-HHhhc----CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCc
Q 042645 281 KVVFTTREFE-VCGLM----DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLP 345 (427)
Q Consensus 281 ~IivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~P 345 (427)
.+|.||.... +...+ .-...+.+...+.++-.+++...+.......... ...++..+.|..
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~----l~~la~~t~g~~ 407 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCC----THHHHHSCSSCC
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccch----hHHHHHhhcCcc
Confidence 5555555432 21111 1124567888889999999987764433222222 344555666654
No 80
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.48 E-value=0.00043 Score=60.09 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCC----------CCCCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYN----------ESWDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~----------~~~~~~~~ 237 (427)
...++.|+|++|+|||||+..++. . . -..++|++.....+...+.. +...++... ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 456899999999999999999987 2 1 23678887766555554443 333322210 00011112
Q ss_pred HHHHHHHHHHhcCCcEEEEEeccCCc
Q 042645 238 DEKAQEIFKTMRNRKIVLLLDDIWEL 263 (427)
Q Consensus 238 ~~~~~~l~~~L~~k~~LlVlDdv~~~ 263 (427)
......+...+..++-+||+|.+...
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 33455555555445789999998643
No 81
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.46 E-value=0.0027 Score=57.24 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|-++.+++|.+.+.. .-.+-+.|+|++|+|||||++.++... . . ..+.+....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 4567888877777765421 112239999999999999999999876 1 1 2334432211100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh-cCCcEEEEEeccCCcccc-------------cccccCCCCC--CC
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM-RNRKIVLLLDDIWELFDL-------------AQVGLPVPSR--AS 278 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~~~~-------------~~~~~~l~~~--~~ 278 (427)
........+..+.+.. ...+.++++|+++..... ..+...+..+ ..
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111222222222 346889999999753110 0000111111 12
Q ss_pred CcEEEEecCChhHHh--hc---CCCcceeccCCChHHHHHHHHHHhC
Q 042645 279 ASKVVFTTREFEVCG--LM---DAHKSFKVECLGYEDAWRLFEEKVG 320 (427)
Q Consensus 279 gs~IivTtR~~~v~~--~~---~~~~~~~l~~L~~~e~~~lf~~~~~ 320 (427)
..-++.+|....+.. .. .-...+.++..+.++-.++|+....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 334555666554421 11 2345678899999999999987763
No 82
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.43 E-value=8.5e-05 Score=67.89 Aligned_cols=71 Identities=23% Similarity=0.375 Sum_probs=46.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVV--SRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 245 (427)
..+++.|+|++|+|||+||.+++... . ..++|++. .+..+ . ...+.+.....+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v~-------------~-----~~~~le~~l~~i~ 177 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPLS-------------G-----YNTDFNVFVDDIA 177 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSST-------------T-----CBCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhhh-------------h-----hhcCHHHHHHHHH
Confidence 34678899999999999999998752 1 12345555 22211 0 0134566666677
Q ss_pred HHhcCCcEEEEEeccCCc
Q 042645 246 KTMRNRKIVLLLDDIWEL 263 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv~~~ 263 (427)
+.+...+ +||+|++...
T Consensus 178 ~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 178 RAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHHHHCS-EEEEECCTTT
T ss_pred HHHhhCC-EEEEeccccc
Confidence 7776666 9999998654
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.36 E-value=0.0006 Score=63.72 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=59.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|+|++|+|||||+.+++..... .-..++|++....++.. .++.++...... ...+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 4579999999999999999999887621 22356788776666543 556666543211 234556666666
Q ss_pred HHHhc-CCcEEEEEeccCCc
Q 042645 245 FKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~~ 263 (427)
...++ .+.-++|+|.+...
T Consensus 132 ~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHHTSCCSEEEEECTTTC
T ss_pred HHHhhhcCCCeEEehHhhhh
Confidence 66554 45669999997543
No 84
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.0011 Score=58.52 Aligned_cols=95 Identities=15% Similarity=0.161 Sum_probs=56.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----C---CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE----S---WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----~---~~~~~~ 237 (427)
...++.|+|++|+|||||+..++....... ..-..++|++....+....+. .++..++.... . ....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 456899999999999999999987531110 123578888876655544433 34455544310 0 012223
Q ss_pred HHH---HHHHHHHhc-CCcEEEEEeccCCc
Q 042645 238 DEK---AQEIFKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 238 ~~~---~~~l~~~L~-~k~~LlVlDdv~~~ 263 (427)
.+. ...+.+.+. .+.-+||+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 332 333444443 47789999998643
No 85
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.29 E-value=0.00035 Score=73.64 Aligned_cols=45 Identities=29% Similarity=0.489 Sum_probs=36.9
Q ss_pred ccccchhhHHHHHHHhccC---------CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLTEE---------PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|.+..++.+...+... ....+.|+|++|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888887777431 22579999999999999999999876
No 86
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.26 E-value=0.0013 Score=61.56 Aligned_cols=164 Identities=10% Similarity=-0.081 Sum_probs=99.3
Q ss_pred HHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHH
Q 042645 160 VWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDE 239 (427)
Q Consensus 160 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~ 239 (427)
+.+.+...-.++..++|+.|.||++.+..+.+... ...|+....+.+....++.++.
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~--------------------- 65 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIF--------------------- 65 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHH---------------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHH---------------------
Confidence 33444434567899999999999999999887652 1123221111222223333332
Q ss_pred HHHHHHH-HhcCCcEEEEEeccCC-c--ccccccccCCCCCCCCcEEEEecCC-------hhHHhh-cCCCcceeccCCC
Q 042645 240 KAQEIFK-TMRNRKIVLLLDDIWE-L--FDLAQVGLPVPSRASASKVVFTTRE-------FEVCGL-MDAHKSFKVECLG 307 (427)
Q Consensus 240 ~~~~l~~-~L~~k~~LlVlDdv~~-~--~~~~~~~~~l~~~~~gs~IivTtR~-------~~v~~~-~~~~~~~~l~~L~ 307 (427)
+.+.. -+-+++-++|+|+++. . ..++.+...+.....++.+|++|.. ..+... ......++..+++
T Consensus 66 --~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 66 --SLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp --HHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred --HHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 22221 1335677889999876 3 3345554445444556777766643 123332 2344678999999
Q ss_pred hHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCCchHHHHH
Q 042645 308 YEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGLPLALITV 351 (427)
Q Consensus 308 ~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~Plai~~~ 351 (427)
.++...++.+.+...+...+ .+.+..|++.++|.+..+...
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 99999988887743332222 355888999999988877653
No 87
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.25 E-value=0.0018 Score=60.49 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCC----------CCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNE----------SWDN 234 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~----------~~~~ 234 (427)
...++.|+|++|+||||||.+++....... +.-..++|++....++...+. .++..++.... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999999987642111 123578899888777766654 34455554321 0011
Q ss_pred CCHHHHHHHHHHHhc---CCcEEEEEeccCC
Q 042645 235 KSFDEKAQEIFKTMR---NRKIVLLLDDIWE 262 (427)
Q Consensus 235 ~~~~~~~~~l~~~L~---~k~~LlVlDdv~~ 262 (427)
....++...+...++ .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 112233344445443 4567999999854
No 88
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.24 E-value=0.0018 Score=60.00 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=59.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC---CCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP---NDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...++.|+|++|+||||||.+++....... ..-..++|++....++...+. .++..++..... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 456899999999999999999987652110 113478899888777766655 345556543210 012233
Q ss_pred H---HHHHHHHHHhc--CCcEEEEEeccCC
Q 042645 238 D---EKAQEIFKTMR--NRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~---~~~~~l~~~L~--~k~~LlVlDdv~~ 262 (427)
+ ++...+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 3 23445555554 4667999999853
No 89
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.24 E-value=0.00012 Score=61.90 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=63.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC---CCCHHHHHHHHHHHhCCC----CCCCCCCC-----
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR---DLQLGKIQESIAKKIGLY----NESWDNKS----- 236 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~---~~~~~~l~~~i~~~l~~~----~~~~~~~~----- 236 (427)
...|.|++..|.||||.|--..-+.. ++-..+.++..-+ ......++..+ +.. ...+....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 35677888888999999988776652 3333455565433 22333444333 210 00111111
Q ss_pred ----HHHHHHHHHHHhcCCcE-EEEEeccCCc-----ccccccccCCCCCCCCcEEEEecCChh
Q 042645 237 ----FDEKAQEIFKTMRNRKI-VLLLDDIWEL-----FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 237 ----~~~~~~~l~~~L~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
.........+.+.+.+| |||||++-.. ...+++...+........||+|+|+.+
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 11223344555655555 9999998432 223334444444455678999999853
No 90
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.23 E-value=0.00034 Score=72.84 Aligned_cols=46 Identities=26% Similarity=0.440 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHhcc---------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE---------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888877642 123479999999999999999999876
No 91
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.21 E-value=0.0021 Score=58.44 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=58.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHH-HHHHH
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEK-AQEIF 245 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 245 (427)
.++.|+|++|+|||||+.+++..... ...-..++|++....++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 37899999999999999998776621 1113467899887777653 367777654321 13344554 43333
Q ss_pred HH--h-cCCcEEEEEeccCCc
Q 042645 246 KT--M-RNRKIVLLLDDIWEL 263 (427)
Q Consensus 246 ~~--L-~~k~~LlVlDdv~~~ 263 (427)
.. + .+++-|||+|-+...
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTC
T ss_pred HHHHhhccCceEEEEeccccc
Confidence 32 3 357889999998654
No 92
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.16 E-value=0.0014 Score=61.64 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES---WDNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~l 244 (427)
...++.|+|.+|+||||||.+++..... .-..++|++....++.. .+..++..... ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4568999999999999999998877622 12368899887765543 24555554221 0223556666666
Q ss_pred HHHhcC-CcEEEEEeccCCc
Q 042645 245 FKTMRN-RKIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L~~-k~~LlVlDdv~~~ 263 (427)
....+. ..-+||+|.+...
T Consensus 145 ~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHHTTTCCSEEEEECTTTC
T ss_pred HHHHhcCCCCEEEEeChHHh
Confidence 666553 4569999998543
No 93
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.16 E-value=0.00016 Score=58.46 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|++..++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999998888887753 333458899999999999999987764
No 94
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.00013 Score=63.43 Aligned_cols=113 Identities=15% Similarity=-0.061 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
...++.|+|..|+||||++..+.++.. .+-..++.++..... . ....+++.++............++.+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 457899999999999999998888772 222234444433221 1 1223444444432221222334555555555
Q ss_pred hcCCc-EEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCCh
Q 042645 248 MRNRK-IVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREF 289 (427)
Q Consensus 248 L~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~ 289 (427)
+.+.+ -+||+|.+... ...+.+ ..+.+ .|..||+|.+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccc
Confidence 54444 49999998643 112222 12222 267899999853
No 95
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.12 E-value=0.0016 Score=60.97 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|+|++|+||||||.+++..... .-..++|++....++.. .++.++...... ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4578999999999999999999876522 22457888887665542 355565443211 123455666555
Q ss_pred HHHhc-CCcEEEEEeccCCc
Q 042645 245 FKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~~ 263 (427)
....+ .+.-+||+|.+...
T Consensus 132 ~~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHHTTTCCSEEEEECGGGC
T ss_pred HHHHhcCCCCEEEEcChHhh
Confidence 55554 35679999998643
No 96
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.02 E-value=0.0027 Score=58.75 Aligned_cols=94 Identities=14% Similarity=0.212 Sum_probs=58.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC-----------CCCC--cEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC---
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT-----------PNDF--DFVIWEVVSRDLQLGKIQESIAKKIGLYNES--- 231 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~--- 231 (427)
...++.|+|.+|+|||+||.+++...... .+.. ..++|++....++...+.. ++..++.....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45799999999999999999988653110 1111 5788998888777766653 45556543210
Q ss_pred ----CCCCCHH---HHHHHHHHHhcC--CcEEEEEeccCC
Q 042645 232 ----WDNKSFD---EKAQEIFKTMRN--RKIVLLLDDIWE 262 (427)
Q Consensus 232 ----~~~~~~~---~~~~~l~~~L~~--k~~LlVlDdv~~ 262 (427)
....+.+ ++...+...++. +.-+||+|.+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0122333 234455555543 456999998853
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.97 E-value=0.00098 Score=61.27 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=29.8
Q ss_pred hhhHHHHHHHhccC---CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 154 QSTLDRVWRCLTEE---PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 154 ~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+..+.+++... ....+.|+|++|+|||+||..+++..
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33444555555542 24678999999999999999999877
No 98
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.96 E-value=0.0025 Score=59.68 Aligned_cols=87 Identities=20% Similarity=0.163 Sum_probs=56.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...... ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4568999999999999999998877622 12357888887766543 245555432211 122345555555
Q ss_pred HHHhc-CCcEEEEEeccCC
Q 042645 245 FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~ 262 (427)
....+ .+.-+||+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 44433 4566999999854
No 99
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.83 E-value=0.003 Score=55.09 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW--------------- 232 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~--------------- 232 (427)
...+++|.|++|+|||||+..++..... .-..++|+.... ....+...+. .++......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEecccccc
Confidence 3468999999999999999999866521 112455655433 3444443332 443221100
Q ss_pred ------CCCCHHHHHHHHHHHhc-CCc--EEEEEeccCCcc--c---ccccccCCCC--CCCCcEEEEecCCh
Q 042645 233 ------DNKSFDEKAQEIFKTMR-NRK--IVLLLDDIWELF--D---LAQVGLPVPS--RASASKVVFTTREF 289 (427)
Q Consensus 233 ------~~~~~~~~~~~l~~~L~-~k~--~LlVlDdv~~~~--~---~~~~~~~l~~--~~~gs~IivTtR~~ 289 (427)
...+..++...+...+. .++ .+||+|.+.... + ...+...+.. ...|..||++|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 11245555555555443 234 499999986331 1 1111111111 12467788888765
No 100
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.81 E-value=0.0014 Score=56.19 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=33.9
Q ss_pred cchhhHHHHHHHhcc---CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 152 GMQSTLDRVWRCLTE---EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 152 GR~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|++.++.|.+.+.. ....+|+|.|+.|+||||+++.+...+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677778877764 356799999999999999999998765
No 101
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.80 E-value=0.0021 Score=66.29 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=78.5
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCH
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQL 214 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~ 214 (427)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+.+++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888887776531 134568899999999999999999987 221 22222 2
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhcCCcEEEEEeccCCccc----------------ccccccCCCCC-C
Q 042645 215 GKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMRNRKIVLLLDDIWELFD----------------LAQVGLPVPSR-A 277 (427)
Q Consensus 215 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~~-~ 277 (427)
.+++ ... .+.+...+...+...-+..+++|++|+++.... ..++...+... .
T Consensus 545 ~~l~----s~~-------vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 545 PELL----TMW-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HHHH----TTT-------CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred chhh----ccc-------cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 2222 111 223333333333333356899999999975311 01111111111 1
Q ss_pred CCcEEEE-ecCChhH-H-hhc---CCCcceeccCCChHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHcCCC
Q 042645 278 SASKVVF-TTREFEV-C-GLM---DAHKSFKVECLGYEDAWRLFEEKVGRDILDSHPDIPELAETVARECGGL 344 (427)
Q Consensus 278 ~gs~Iiv-TtR~~~v-~-~~~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~~~i~~~~~G~ 344 (427)
....++| ||..... - ..+ .-...+.++.-+.++-.++|+.+........+.+ ...|++.+.|.
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~ 682 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGF 682 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCC
Confidence 1223444 4433221 1 111 2245677777777777788877664433222222 34556666664
No 102
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.78 E-value=0.00091 Score=62.16 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|++..+..+...+..++ .+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 467999999999988887653 58899999999999999999876
No 103
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.74 E-value=0.007 Score=58.04 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|.+|+||||++..++..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998877
No 104
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.70 E-value=0.012 Score=55.95 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC---CCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT---PNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKSF 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~~ 237 (427)
...++.|+|++|+|||||+..++-..... ...-..++|++....+....+ ..+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 45689999999999999999876333111 113356888887665555443 3466666543210 011222
Q ss_pred HH---HHHHHHHHh-cCCcEEEEEeccCC
Q 042645 238 DE---KAQEIFKTM-RNRKIVLLLDDIWE 262 (427)
Q Consensus 238 ~~---~~~~l~~~L-~~k~~LlVlDdv~~ 262 (427)
.. ....+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22 223333333 24678999999753
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.69 E-value=7.7e-05 Score=63.17 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999997776665
No 106
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0079 Score=55.37 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=36.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
...++.|.|.+|+||||||..++..... .+ ..++|++.. .+..++...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE--~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE--MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC--CCHHHHHHHHHH
Confidence 4568999999999999999999876622 22 567787765 345555555554
No 107
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.63 E-value=0.0015 Score=64.06 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|++..++.+...+..+. .|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 457999999998888877653 58899999999999999999876
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.60 E-value=0.0092 Score=51.86 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCC--C-CCCcEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHT--P-NDFDFVIWEVVSRDLQLGKIQESIAKKIGL 227 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~ 227 (427)
...+++|+|++|+|||||++.++...... . .....++|+.......... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 45799999999999999999998744110 0 1234577777554433332 3344444443
No 109
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.59 E-value=0.0018 Score=55.72 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=30.7
Q ss_pred hhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 155 STLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 155 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.+++|.+.+.. +...+|+|.|+.|+|||||++.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666653 356799999999999999999998776
No 110
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.53 E-value=0.0011 Score=62.11 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..+..+...+..+...-+.|+|++|+|||+||+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998876665555443333459999999999999999999876
No 111
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.51 E-value=0.0071 Score=56.53 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=54.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCC---CcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCCC-
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPND---FDFVIWEVVSRDLQLGKIQESIAKKIGLYNES-------WDNKS- 236 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~-------~~~~~- 236 (427)
...++.|+|++|+|||||+..++......... -..++|++....+....+ ..+++.++..... ....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56799999999999999999998765211011 134588877655433333 3344444332100 00111
Q ss_pred --HHHHHHHHHHHhc------CCcEEEEEeccCCc
Q 042645 237 --FDEKAQEIFKTMR------NRKIVLLLDDIWEL 263 (427)
Q Consensus 237 --~~~~~~~l~~~L~------~k~~LlVlDdv~~~ 263 (427)
..++...+...+. .++-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 2233444455554 46789999998654
No 112
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.51 E-value=0.0086 Score=54.51 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=46.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR-DLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
...+++|+|++|+||||++..++..+....+ ..+..+.... .....+.+.......+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 3468999999999999999999877621112 2344454432 22233334443433443321 1223334433333
Q ss_pred HhcCCcEEEEEecc
Q 042645 247 TMRNRKIVLLLDDI 260 (427)
Q Consensus 247 ~L~~k~~LlVlDdv 260 (427)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 34457888843
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0015 Score=54.49 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|++|+||||+++.+.+.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999887
No 114
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.49 E-value=0.014 Score=54.65 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC
Q 042645 159 RVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL 212 (427)
Q Consensus 159 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~ 212 (427)
+.++.+.. .....++|+|++|+|||||++.+.+........+.+ +++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCCh
Confidence 34444433 345689999999999999999887765211223333 456676543
No 115
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.47 E-value=0.026 Score=54.26 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=45.0
Q ss_pred HHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHH
Q 042645 159 RVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKK 224 (427)
Q Consensus 159 ~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~ 224 (427)
+.++.|.. .....++|.|.+|+|||+|+..+.+... ..+.+.++++-+++.. ...++++++...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34555543 3456799999999999999999988752 2344667788887654 456677777655
No 116
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.47 E-value=0.012 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|++|+||||++..++..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998776
No 117
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.46 E-value=0.0072 Score=51.85 Aligned_cols=77 Identities=19% Similarity=0.133 Sum_probs=44.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHh---CCC----CCCCCCCCHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKI---GLY----NESWDNKSFDEKAQE 243 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l---~~~----~~~~~~~~~~~~~~~ 243 (427)
+|.|.|++|+||||.|+.+.+.+. + ..++ ..+++++-+..- +.. ...-...+.+-....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~---~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----F---VHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----C---EEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----C---eEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 578999999999999999998871 1 1222 344554433211 000 000012334455666
Q ss_pred HHHHhcCCcEEEEEeccCC
Q 042645 244 IFKTMRNRKIVLLLDDIWE 262 (427)
Q Consensus 244 l~~~L~~k~~LlVlDdv~~ 262 (427)
+.+.+..... +|||.+-.
T Consensus 68 v~~~l~~~~~-~ilDGfPR 85 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFPR 85 (206)
T ss_dssp HHHHCCSSSC-EEEESCCC
T ss_pred HHHhhccCCc-eEecCCch
Confidence 7777765444 68899853
No 118
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.43 E-value=0.0016 Score=53.93 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|.|++|+||||+++.+.+.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998876
No 119
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.41 E-value=0.0029 Score=59.60 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHhc-------------c--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLT-------------E--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36899998888888772 1 134578999999999999999999886
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.0017 Score=53.79 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|.|++|+||||+++.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 544
No 121
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.008 Score=54.94 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH--HHHHHHHHHhCCCCCC-CCCCCHHHH-HHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG--KIQESIAKKIGLYNES-WDNKSFDEK-AQE 243 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~--~l~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 243 (427)
...+++|+|++|+||||++..++..+.. . -..+..+... .+... +-+...++..+++.-. ....++... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3478999999999999999999887721 1 2234444433 22222 2233445555543211 112233332 233
Q ss_pred HHHHhcCCcEEEEEeccC
Q 042645 244 IFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 244 l~~~L~~k~~LlVlDdv~ 261 (427)
+...+....-++|+|..-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 444455555688889764
No 122
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.35 E-value=0.0035 Score=59.32 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHhc------------------------------cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLT------------------------------EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~------------------------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 357898888888877662 0124568999999999999999999876
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.31 E-value=0.0026 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.307 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|++|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 124
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.27 E-value=0.0026 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.26 E-value=0.0024 Score=54.46 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|+|++|+||||+++.+...+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 126
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.25 E-value=0.025 Score=52.24 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+++|+|+.|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998776
No 127
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.23 E-value=0.003 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.7
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 166 EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 166 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.....+|+|.|++|+||||+++.+...+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998877
No 128
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.23 E-value=0.0046 Score=53.73 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=30.8
Q ss_pred hhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 154 QSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 154 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+.+...+.......|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344455555555567899999999999999999998875
No 129
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.22 E-value=0.0025 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.|+|++|+||||+++.+.+.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.22 E-value=0.0023 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|+|++|+||||+++.+...+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 131
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.21 E-value=0.0029 Score=53.25 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|++|+||||+++.+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 132
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.21 E-value=0.033 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.++|.+|+||||++..++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998877
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.21 E-value=0.0027 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|.|++|+||||+++.+.+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 134
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.21 E-value=0.012 Score=66.40 Aligned_cols=86 Identities=20% Similarity=0.158 Sum_probs=57.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
..+.+.|+|++|+|||+||.++..... ..-..++|+++...++... ++.++.+.... ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567899999999999999999987762 2334577888777665544 55565432211 122334555555
Q ss_pred HHHhc-CCcEEEEEeccC
Q 042645 245 FKTMR-NRKIVLLLDDIW 261 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~ 261 (427)
....+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55543 577899999985
No 135
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.20 E-value=0.018 Score=54.98 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++.|+|++|+||||++..++..+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998877
No 136
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.20 E-value=0.048 Score=50.41 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=35.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
...++.|.|.+|+||||||..++..... .-..++|++.. .+..++...++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 4468999999999999999999887632 23456776653 345555555543
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.009 Score=52.51 Aligned_cols=40 Identities=25% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
...++.|.|++|+|||||+.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 4468999999999999999888765521 123567776543
No 138
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.19 E-value=0.0032 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|.|++|+||||+++.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 139
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.19 E-value=0.015 Score=55.96 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=53.8
Q ss_pred HHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCC
Q 042645 161 WRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDN 234 (427)
Q Consensus 161 ~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~ 234 (427)
++.|.. .....++|+|.+|+|||||+..+...... ......+++.+++.. ...+++.++...-.+... ....
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~--~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~ 219 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ--EHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN 219 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH--HTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh--ccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC
Confidence 444432 23346899999999999999998876521 122344666676654 344555555432100000 0011
Q ss_pred CCHHHHH------HHHHHHh---cCCcEEEEEeccC
Q 042645 235 KSFDEKA------QEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 235 ~~~~~~~------~~l~~~L---~~k~~LlVlDdv~ 261 (427)
.++.... -.+.+++ +++++||++||+.
T Consensus 220 d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 220 EPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 1111111 1222332 5899999999984
No 140
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0032 Score=52.77 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.12 E-value=0.0032 Score=53.76 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+|+|.|+.|+|||||++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345789999999999999999998765
No 142
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.11 E-value=0.027 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|++|+|||||+..++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998776
No 143
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.11 E-value=0.0029 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|.|.|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998776
No 144
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.10 E-value=0.025 Score=54.57 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=60.9
Q ss_pred HHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCC-------CC-
Q 042645 161 WRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLY-------NE- 230 (427)
Q Consensus 161 ~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~-------~~- 230 (427)
++.|.. .....++|.|.+|+|||+|+..+.+... ..+.+.++++-+++.. ...+++.++...=.+. ..
T Consensus 156 ID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 156 VNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp HHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred eeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 444432 3445799999999999999999988752 2345677888887765 4566777776542222 00
Q ss_pred ---CCCCCCHHH------HHHHHHHHhc---CCcEEEEEeccC
Q 042645 231 ---SWDNKSFDE------KAQEIFKTMR---NRKIVLLLDDIW 261 (427)
Q Consensus 231 ---~~~~~~~~~------~~~~l~~~L~---~k~~LlVlDdv~ 261 (427)
.....+... ..-.+-++++ ++.+||++||+-
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 001112111 1222334544 589999999984
No 145
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.09 E-value=0.0029 Score=52.91 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.|.|++|+||||+++.+.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 146
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.09 E-value=0.0026 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 147
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.08 E-value=0.0025 Score=59.64 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=62.0
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhC-CCCCCCCCCCHHHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIG-LYNESWDNKSFDEKAQEIF 245 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~-~~~~~~~~~~~~~~~~~l~ 245 (427)
....+++|.|+.|+|||||++.+....... .-..++.+.-.-.+.... ... ..... ...........+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~-------~~~~v~q~~-~~~~~~~~~~~La 190 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHES-------KKCLVNQRE-VHRDTLGFSEALR 190 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCC-------SSSEEEEEE-BTTTBSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhc-------cccceeeee-eccccCCHHHHHH
Confidence 344599999999999999999987765211 011222221111110000 000 00000 0111123344777
Q ss_pred HHhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhHHh
Q 042645 246 KTMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEVCG 293 (427)
Q Consensus 246 ~~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v~~ 293 (427)
..|...+=+|++|+.-+.+.+..+.... ..|..|++|+...+...
T Consensus 191 ~aL~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 191 SALREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred HHhhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 8888899999999997655444332221 23666888888766543
No 148
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.07 E-value=0.0032 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|++|+||||+++.+.+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 149
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.06 E-value=0.0037 Score=54.08 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.|.|++|+||||.|+.+.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999887
No 150
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.05 E-value=0.004 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 151
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.05 E-value=0.005 Score=59.09 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhcc--------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE--------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.++.++.|..++.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999888888776632 134569999999999999999999887
No 152
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0053 Score=53.09 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=31.5
Q ss_pred chhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 153 MQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 153 R~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++..+.+...+.....++|+|+|.+|+|||||+..+....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555555545577899999999999999999998875
No 153
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.03 E-value=0.0061 Score=55.31 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+|+|.|+.|+|||||++.+...+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 154
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.99 E-value=0.007 Score=56.10 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=31.5
Q ss_pred ccchhhHHHHHHHhc----cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 151 VGMQSTLDRVWRCLT----EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 151 vGR~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++-+...+++++.+. .+....|.|+|++|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 344455555655553 3456679999999999999999888765
No 155
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.99 E-value=0.0041 Score=52.64 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.99 E-value=0.0036 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|+|++|+|||||++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999998876
No 157
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0041 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+|+.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 158
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.97 E-value=0.0045 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 159
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.96 E-value=0.0034 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+++.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 160
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.95 E-value=0.0067 Score=55.01 Aligned_cols=26 Identities=31% Similarity=0.241 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|++|+||||+++.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998775
No 161
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.93 E-value=0.0041 Score=55.35 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 162
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.93 E-value=0.0046 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|.|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 163
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.0033 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|+|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998876
No 164
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.92 E-value=0.006 Score=51.84 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+..++.. +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 233479999999999999999998887
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.92 E-value=0.0041 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|++|+||||+++.+.+.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 166
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.91 E-value=0.0042 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999887
No 167
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.89 E-value=0.02 Score=52.03 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=51.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD-LQLGKIQESIAKKIGLYNES-WDNKSFDEKAQEIFK 246 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~-~~~~~l~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 246 (427)
..+++++|.+|+||||++..++..+.. .-..+.++..... ....+.+.......+++.-. ....++..+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 468999999999999999999877631 1223555554322 22233344455555543211 122455555544444
Q ss_pred Hhc-CCcEEEEEeccC
Q 042645 247 TMR-NRKIVLLLDDIW 261 (427)
Q Consensus 247 ~L~-~k~~LlVlDdv~ 261 (427)
.++ +.-=++++|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 454 333378888753
No 168
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.89 E-value=0.0054 Score=52.34 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|++|+||||+++.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.89 E-value=0.0049 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|.|++|+||||+++.+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999887
No 170
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.88 E-value=0.0053 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...|+|+|++|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999887
No 171
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.88 E-value=0.0047 Score=52.40 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+.+.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 172
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.86 E-value=0.0053 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998765
No 173
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.86 E-value=0.0046 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=19.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQIN 190 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~ 190 (427)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 174
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.84 E-value=0.0044 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++++|.|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998765
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.83 E-value=0.005 Score=51.66 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|.|++|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998776
No 176
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.82 E-value=0.0053 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
.+++|.|++|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999764
No 177
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.82 E-value=0.0086 Score=52.84 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=29.0
Q ss_pred hhhHHHHHHHhcc--CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 154 QSTLDRVWRCLTE--EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 154 ~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+.++...... .....|+|.|++|+||||+|+.+.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 12 IDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444322 355689999999999999999998876
No 178
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.82 E-value=0.0051 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 179
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.80 E-value=0.0042 Score=51.42 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|++|+||||+++.+.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999876
No 180
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.80 E-value=0.0061 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+|||||++.+...+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998865
No 181
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.78 E-value=0.0068 Score=51.92 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|++|+||||+++.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 182
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.77 E-value=0.06 Score=50.33 Aligned_cols=53 Identities=19% Similarity=0.113 Sum_probs=34.9
Q ss_pred HHHHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCC
Q 042645 158 DRVWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRD 211 (427)
Q Consensus 158 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~ 211 (427)
-++++.+.. .....++|+|.+|+|||+|+..+.+........+.+ +++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccC
Confidence 355666643 445679999999999999999988865211223333 45666554
No 183
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.77 E-value=0.0057 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+.+.+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 184
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.76 E-value=0.0038 Score=52.28 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=18.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|.|++|+||||+|+.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998876
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.74 E-value=0.0052 Score=53.42 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|+|++|+||||+++.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998765
No 186
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.74 E-value=0.0072 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+|+|.|+.|+||||+++.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999764
No 187
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.73 E-value=0.0058 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+|||||++.+.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999766
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.72 E-value=0.0062 Score=52.26 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 189
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.69 E-value=0.0067 Score=54.15 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998874
No 190
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.0062 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.67 E-value=0.0069 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++++|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998765
No 192
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.67 E-value=0.0059 Score=52.05 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|.|++|+||||+|+.+.+.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998876
No 193
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.66 E-value=0.0081 Score=53.35 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|++|+||||+++.+...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998876
No 194
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.66 E-value=0.0067 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+.+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 195
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.65 E-value=0.0062 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 196
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.65 E-value=0.0062 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 197
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.63 E-value=0.0069 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|++|+||||+++.+.+.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998876
No 198
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.63 E-value=0.032 Score=50.74 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH--HHHHHHHHHhCCCCCCC-CCCCHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG--KIQESIAKKIGLYNESW-DNKSFDEKAQEIF 245 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~--~l~~~i~~~l~~~~~~~-~~~~~~~~~~~l~ 245 (427)
..+++|+|.+|+||||++..++..+.. . -..+.++.... .... ..+.......++..-.. ...++.++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~--~~~v~l~~~d~-~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-K--GRRPLLVAADT-QRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-T--TCCEEEEECCS-SCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCc-ccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999887621 1 22344444332 2222 12334445555432110 1234555543333
Q ss_pred HHh-cCCcEEEEEecc
Q 042645 246 KTM-RNRKIVLLLDDI 260 (427)
Q Consensus 246 ~~L-~~k~~LlVlDdv 260 (427)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244557888976
No 199
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0056 Score=52.17 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998755
No 200
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.61 E-value=0.013 Score=49.51 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|+.|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 201
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.61 E-value=0.012 Score=54.16 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=30.8
Q ss_pred ccchhhHHHHHHHhccC----CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 151 VGMQSTLDRVWRCLTEE----PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 151 vGR~~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|....+..+...+... ...+|+|.|+.|+|||||++.+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44445555555444332 34599999999999999999998766
No 202
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.61 E-value=0.0076 Score=53.48 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|++|+||||+|+.+...+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 203
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.59 E-value=0.0078 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|.|+.|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 204
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.58 E-value=0.0074 Score=51.64 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 205
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.56 E-value=0.0068 Score=52.27 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 206
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.55 E-value=0.0075 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|++|+||||+++.+.+.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999876
No 207
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.54 E-value=0.048 Score=53.66 Aligned_cols=51 Identities=10% Similarity=0.006 Sum_probs=35.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
...++.|.|.+|+||||||.+++.+... .+-..++|++... +..++...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccC--CHHHHHHHHH
Confidence 4568999999999999999999887732 1123567776644 4556665554
No 208
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.53 E-value=0.0075 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998776
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.51 E-value=0.045 Score=52.92 Aligned_cols=52 Identities=12% Similarity=0.003 Sum_probs=36.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
...++.|.|.+|+||||||..++...... .-..++|++.. .+..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHH
Confidence 45689999999999999999998776321 12356776654 345566666554
No 210
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.51 E-value=0.0082 Score=55.15 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
++.++|+|+|-||+||||.+..+.-.+.. .+ ..+.-+.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-CC--CeEEEEecCC
Confidence 46799999999999999999988877732 22 2355555543
No 211
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.48 E-value=0.0077 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|++|+||||+++.+.+.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999887
No 212
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.47 E-value=0.0085 Score=49.46 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++++|.|..|+|||||+..+...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.47 E-value=0.088 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|+|+|.+|+||||++..++..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998776
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.46 E-value=0.0047 Score=53.15 Aligned_cols=23 Identities=30% Similarity=0.768 Sum_probs=21.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+|+|.|+.|+||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998876
No 215
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.42 E-value=0.0092 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 216
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.40 E-value=0.011 Score=48.30 Aligned_cols=27 Identities=37% Similarity=0.333 Sum_probs=23.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+++|.|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345689999999999999999998765
No 217
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.39 E-value=0.011 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+|||||++.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998754
No 218
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.38 E-value=0.01 Score=52.72 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+||||+++.+.+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999765
No 219
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.36 E-value=0.011 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+|||||++.+..-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 45799999999999999999998766
No 220
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.36 E-value=0.026 Score=56.91 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=37.5
Q ss_pred ccccchhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799999888888877766 479999999999999999999876
No 221
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.35 E-value=0.0086 Score=51.87 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999998765
No 222
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.31 E-value=0.011 Score=50.83 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+|.|.|+.|+||||+++.+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 223
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.30 E-value=0.01 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|+|+.|+||||+++.+.+.+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998764
No 224
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.30 E-value=0.011 Score=51.28 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998765
No 225
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.28 E-value=0.046 Score=61.72 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
...++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++...... ...+.+++...+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 4579999999999999999999887732 22367888877766543 256666543221 234556666666
Q ss_pred HHHh-cCCcEEEEEeccCCc
Q 042645 245 FKTM-RNRKIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L-~~k~~LlVlDdv~~~ 263 (427)
.... +.+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGGC
T ss_pred HHHHHhcCCcEEEECCHHHh
Confidence 6544 346679999998643
No 226
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.26 E-value=0.035 Score=53.86 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=34.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
...++.|.|.+|+|||||+..++...... .-..++|++... +..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCC--CHHHHHHHH
Confidence 44689999999999999999998776211 123567776543 344555544
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.21 E-value=0.012 Score=53.83 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|++|+|||||+..++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999998776
No 228
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.21 E-value=0.013 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998865
No 229
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.15 E-value=0.059 Score=52.00 Aligned_cols=50 Identities=12% Similarity=0.035 Sum_probs=34.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
...++.|.|.+|+||||||.+++.+... . -..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHH
Confidence 4568999999999999999999887632 2 23577776543 3344444443
No 230
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.15 E-value=0.021 Score=55.49 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=30.0
Q ss_pred chhhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 153 MQSTLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 153 R~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+..+.+.+..++ +.+.|.|.+|+||||++..+...+
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3344555555555544 489999999999999999998877
No 231
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.12 E-value=0.024 Score=53.08 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=29.0
Q ss_pred HHHHHHHhc--cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLT--EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++.+.+. .++..+|+|+|.+|+|||||+..+...+
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554 3567899999999999999999998776
No 232
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.12 E-value=0.012 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|.|++|+||||+++.+.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 233
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.11 E-value=0.012 Score=50.70 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|+|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 234
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.10 E-value=0.037 Score=61.54 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=59.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
..+++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++...... ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4578999999999999999999877632 23468888887766643 256666543221 233456666666
Q ss_pred HHHhc-CCcEEEEEeccCCc
Q 042645 245 FKTMR-NRKIVLLLDDIWEL 263 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~~ 263 (427)
....+ .+.-+||+|.+...
T Consensus 454 ~~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTTC
T ss_pred HHHHHhcCCCEEEECCHHHh
Confidence 55443 46679999998654
No 235
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.10 E-value=0.028 Score=51.68 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|+|++|+||||++..++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998877
No 236
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.09 E-value=0.02 Score=52.28 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=29.8
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 166 EEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 166 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
....++|+|+|-||+||||+|..++..+.. . -..++-+....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCCC
Confidence 346789999999999999999999887732 2 22455565543
No 237
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.07 E-value=0.012 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.|.|++|+||||+++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 238
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.06 E-value=0.013 Score=51.60 Aligned_cols=24 Identities=38% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
...+++|.|++|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 446899999999999999998873
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.06 E-value=0.026 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|.|++|+||||+++.+.+.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999988
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.06 E-value=0.011 Score=49.85 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988765
No 241
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.98 E-value=0.014 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|.|++|+||||+++.+.+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999887
No 242
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.97 E-value=0.016 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 243
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.96 E-value=0.051 Score=52.67 Aligned_cols=26 Identities=31% Similarity=0.540 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|..|+|||||++.++..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45699999999999999999998776
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.96 E-value=0.014 Score=51.02 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|.|++|+||||+++.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998876
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.95 E-value=0.015 Score=48.32 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++++|.|+.|+|||||+..+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998876
No 246
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.94 E-value=0.014 Score=49.80 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|+|.|+.|+||||+++.+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999998876
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.93 E-value=0.043 Score=61.07 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=62.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESW---DNKSFDEKAQEI 244 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~~~l 244 (427)
..++|-|+|+.|+||||||.++.... +..-...+|+...+..++.- ++.++++.+.. .....++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45799999999999999999998765 33445678888877766552 77888765432 233446666666
Q ss_pred HHHhc-CCcEEEEEeccCC
Q 042645 245 FKTMR-NRKIVLLLDDIWE 262 (427)
Q Consensus 245 ~~~L~-~k~~LlVlDdv~~ 262 (427)
...++ +..-+||+|-|-.
T Consensus 1502 ~~~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHcCCCCEEEEccHHh
Confidence 66665 5667999998843
No 248
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.92 E-value=0.0091 Score=59.99 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=33.7
Q ss_pred CccccchhhHHHHHHHhccCCCe-----------EEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTEEPVG-----------IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 44678877666665555444211 58999999999999999998765
No 249
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.91 E-value=0.015 Score=53.64 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|.|+.|+||||||..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 250
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.89 E-value=0.018 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHH
Q 042645 169 VGIVGLYGMGGVGKTTLLTQIN 190 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~ 190 (427)
..+|+|.|+.|+||||+|+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 251
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.89 E-value=0.013 Score=51.75 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|+.|+||||+++.+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999999876
No 252
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.88 E-value=0.01 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++++|+|..|+|||||++.+..-+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998776
No 253
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.88 E-value=0.018 Score=52.74 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998765
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.88 E-value=0.017 Score=52.67 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|+|+.|+||||+++.++..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 255
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.87 E-value=0.01 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=16.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHH-hhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQIN-NSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 193 (427)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 544
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.86 E-value=0.015 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 257
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.85 E-value=0.016 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|.|+|+.|+|||||+..+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999876
No 258
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.83 E-value=0.11 Score=50.29 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----C
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYNE----S 231 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~ 231 (427)
.++.|.. .....++|.|.+|+|||+|| ..+.+.. ..+ .++++-+++.. ...++...+...=.+... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444432 34456899999999999995 5676664 234 34677777654 455666666543222110 0
Q ss_pred CCCCCHHHHH------HHHHHHh--cCCcEEEEEeccC
Q 042645 232 WDNKSFDEKA------QEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 232 ~~~~~~~~~~------~~l~~~L--~~k~~LlVlDdv~ 261 (427)
....+..... -.+-+++ +++.+||++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 0112211111 1223333 4799999999984
No 259
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.83 E-value=0.017 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998654
No 260
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.81 E-value=0.016 Score=50.40 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987644
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.79 E-value=0.019 Score=52.82 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|.|.|+.|+|||||+..+++.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999876
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.77 E-value=0.02 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|+|.|+.|+|||||+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998775
No 263
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.75 E-value=0.049 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|+.|+||||+++.+.+.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999887
No 264
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.71 E-value=0.035 Score=53.04 Aligned_cols=94 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCCHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SWDNKSFDEKA 241 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~~~~~~~~~~ 241 (427)
....++|.|..|+|||+|+..+.+......++-+ .++++-+++.. ...++..++...=.+... .....+.....
T Consensus 150 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 150 RGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 3445889999999999999999887621112222 45666666543 456666665543111100 00112222111
Q ss_pred ------HHHHHHh---cCCcEEEEEeccC
Q 042645 242 ------QEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 242 ------~~l~~~L---~~k~~LlVlDdv~ 261 (427)
-.+-+++ +++.+||++||+-
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1233444 3789999999984
No 265
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.70 E-value=0.012 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+|+|+|.+|+||||++..++..+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999988776
No 266
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.69 E-value=0.095 Score=50.71 Aligned_cols=97 Identities=11% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----C
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYNE----S 231 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~ 231 (427)
.++.|.. .....++|.|.+|+|||+|| ..+.+.. ..+ .++++-+++.. ...++...+...=.+... .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444432 34456999999999999995 5676654 244 34677777654 455666666542111100 0
Q ss_pred CCCCCHH-HH-----HHHHHHHh--cCCcEEEEEeccC
Q 042645 232 WDNKSFD-EK-----AQEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 232 ~~~~~~~-~~-----~~~l~~~L--~~k~~LlVlDdv~ 261 (427)
....+.. .. .-.+-+++ +++.+||++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 0111211 11 11223333 4799999999984
No 267
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.66 E-value=0.018 Score=50.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 268
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.63 E-value=0.044 Score=47.90 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|+.|+||||+++.+.+.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 269
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.61 E-value=0.019 Score=55.01 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999998765
No 270
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.57 E-value=0.02 Score=51.12 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987654
No 271
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.57 E-value=0.033 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455789999999999999999987755
No 272
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.56 E-value=0.048 Score=50.42 Aligned_cols=44 Identities=23% Similarity=0.210 Sum_probs=30.6
Q ss_pred hccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 164 LTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 164 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
+.+...+++.+.|-||+||||+|..++..+.. .-..++-+....
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~---~g~~vllid~D~ 54 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK---VRRSVLLLSTDP 54 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT---SSSCEEEEECCS
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence 33445678888999999999999999887732 223445555443
No 273
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.52 E-value=0.053 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|.|.|+.|+||||+++.+.+.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 274
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.51 E-value=0.04 Score=51.24 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=25.0
Q ss_pred hccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 164 LTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 164 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+..+++.+.|.||+||||+|..++..+
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQL 42 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 334566899999999999999999888766
No 275
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.51 E-value=0.023 Score=53.07 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+++|+|+.|+||||++..++..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999998776
No 276
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=94.51 E-value=0.027 Score=53.76 Aligned_cols=94 Identities=11% Similarity=0.193 Sum_probs=52.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCC-------CCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCC
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTP-------NDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYN-----ESWD 233 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~-----~~~~ 233 (427)
....++|.|.+|+|||+|+..+++...... ++-+ .++++-+++.. ...++..++...=.+.. ...+
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d 225 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKAD 225 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETT
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCC
Confidence 345688999999999999999988762110 1222 45666676543 45556665544210110 0011
Q ss_pred CCCHHHHH-----HHHHHHh---cCCcEEEEEeccC
Q 042645 234 NKSFDEKA-----QEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 234 ~~~~~~~~-----~~l~~~L---~~k~~LlVlDdv~ 261 (427)
........ -.+-+++ +++.+||++||+-
T Consensus 226 ~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 226 DPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 12222211 1233444 3789999999984
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.50 E-value=0.015 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998764
No 278
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.49 E-value=0.024 Score=51.47 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|.|.|+.|+||||||..+++.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998876
No 279
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.49 E-value=0.022 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|++|+||||+++.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998753
No 280
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.48 E-value=0.023 Score=47.84 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|+|+|.+|+|||||++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 578999999999999999998764
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.46 E-value=0.023 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999987644
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.46 E-value=0.022 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 283
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.45 E-value=0.019 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999987644
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.42 E-value=0.022 Score=50.15 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999997654
No 285
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.42 E-value=0.019 Score=49.51 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997654
No 286
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.42 E-value=0.028 Score=49.40 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|.|..|+||||+++.+.+.+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999887
No 287
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.40 E-value=0.025 Score=50.56 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999874
No 288
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.40 E-value=0.2 Score=48.28 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=54.5
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CC
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SW 232 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~ 232 (427)
.++.|.. .....++|.|..|+|||+|+ ..+.+.. ..-..++++-+++.. ...++...+...=.+... ..
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444432 34456899999999999996 5666643 222245778887654 455666665543212110 00
Q ss_pred CCCCHHHH-H-----HHHHHHh--cCCcEEEEEeccC
Q 042645 233 DNKSFDEK-A-----QEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 233 ~~~~~~~~-~-----~~l~~~L--~~k~~LlVlDdv~ 261 (427)
...+.... . -.+-+++ +++.+||++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 11121111 1 1122333 5899999999984
No 289
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.40 E-value=0.024 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 290
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.39 E-value=0.027 Score=47.95 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=21.6
Q ss_pred hhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 155 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 155 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+.+.+.....+.-.|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 16 PRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 333334343334455678999999999999999888653
No 291
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.37 E-value=0.039 Score=53.96 Aligned_cols=45 Identities=9% Similarity=-0.033 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHh--ccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 149 TVVGMQSTLDRVWRCL--TEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 149 ~~vGR~~~~~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..+.|.+..+.+.+.. ......+|.+.|+.|+||||+++.+.+.+
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3455655555555554 22355789999999999999999999998
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.37 E-value=0.026 Score=51.43 Aligned_cols=27 Identities=15% Similarity=0.216 Sum_probs=23.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 455789999999999999999988654
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.36 E-value=0.024 Score=50.39 Aligned_cols=26 Identities=42% Similarity=0.519 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997654
No 294
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.36 E-value=0.021 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 295
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.36 E-value=0.023 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.34 E-value=0.023 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.33 E-value=0.029 Score=45.33 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|+|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998654
No 298
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.32 E-value=0.012 Score=53.43 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+|+|.|+.|+||||+|+.+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 299
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.30 E-value=0.024 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++.|+|++|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988655
No 300
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.30 E-value=0.025 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999997654
No 301
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.30 E-value=0.027 Score=49.97 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++.+.|.||+||||++..+...+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35788999999999999999998777
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.28 E-value=0.024 Score=50.08 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999987654
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.27 E-value=0.025 Score=50.70 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 304
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.22 E-value=0.029 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 305
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.21 E-value=0.025 Score=47.92 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|+|+|.+|+|||||...+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 306
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.21 E-value=0.028 Score=47.44 Aligned_cols=25 Identities=24% Similarity=0.092 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4679999999999999999998765
No 307
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.19 E-value=0.027 Score=50.38 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999987654
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.19 E-value=0.053 Score=48.14 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=28.2
Q ss_pred HHHHHHHhccC--CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLTEE--PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-+..++... ....+.++|++|.|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34455666543 24579999999999999999998864
No 309
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.17 E-value=0.022 Score=47.56 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 042645 171 IVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999764
No 310
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.16 E-value=0.081 Score=50.47 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.4
Q ss_pred cCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 166 EEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 166 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.....+++|.|+.|+|||||++.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4556799999999999999999998776
No 311
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.16 E-value=0.048 Score=47.08 Aligned_cols=24 Identities=33% Similarity=0.167 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|.+.|.||+||||++..++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 358889999999999999888877
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.15 E-value=0.027 Score=49.83 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987654
No 313
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.13 E-value=0.031 Score=48.89 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|.|+.|+||||+++.+...+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 314
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.13 E-value=0.05 Score=52.65 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCeEEEEEecCCCcHHHHH-HHHHhhccCCCCCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCC-----CCCCCCCH--
Q 042645 168 PVGIVGLYGMGGVGKTTLL-TQINNSFLHTPNDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYN-----ESWDNKSF-- 237 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~-----~~~~~~~~-- 237 (427)
....++|.|.+|+|||+|| ..+.+.. . .+ .++++-+++.. ...++...+...=.+.. ...+....
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~---~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ---G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC---T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh---c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 3456899999999999995 5676654 1 34 45677777654 34455555543211110 00011111
Q ss_pred ---H----HHHHHHHHHhcCCcEEEEEeccC
Q 042645 238 ---D----EKAQEIFKTMRNRKIVLLLDDIW 261 (427)
Q Consensus 238 ---~----~~~~~l~~~L~~k~~LlVlDdv~ 261 (427)
. ...+.++. +++.+||++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 1 12233333 5899999999974
No 315
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=94.11 E-value=0.13 Score=50.19 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=40.0
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC-HHHHHHHH
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ-LGKIQESI 221 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~-~~~l~~~i 221 (427)
.++.|.. .....++|.|..|+|||+|+..+.+.. +-+.++++-+++... ..+++.++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4455543 345679999999999999999988764 234778888877654 44555554
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.10 E-value=0.029 Score=45.34 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999997654
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.09 E-value=0.031 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=23.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455699999999999999999998765
No 318
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.09 E-value=0.055 Score=45.88 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=31.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAK 223 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~ 223 (427)
.|+|-|.-|+||||.++.+.+.+.. ....++...-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~---~g~~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK---RGKKVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCCcHHHHHHHHhh
Confidence 4788899999999999999988832 2223333333333334445555443
No 319
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.07 E-value=0.028 Score=49.85 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 320
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.066 Score=44.60 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=26.0
Q ss_pred HHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 158 DRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 158 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..+.+ +.......|+|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33445568999999999999999999854
No 321
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.03 E-value=0.026 Score=50.81 Aligned_cols=26 Identities=42% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999997654
No 322
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.03 E-value=0.031 Score=50.07 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 323
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.92 E-value=0.032 Score=45.37 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998754
No 324
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.88 E-value=0.028 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+|+|.|+.|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468999999999999999998765
No 325
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.87 E-value=0.064 Score=47.78 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS 209 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 209 (427)
++|+|.|-||+||||++..++..+. .. -..++-+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la-~~--G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH-AM--GKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH-TT--TCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH-HC--CCcEEEEcCC
Confidence 5788899999999999999988873 22 2245555554
No 326
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.85 E-value=0.044 Score=45.54 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999998764
No 327
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.84 E-value=0.05 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999999887
No 328
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.83 E-value=0.039 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 329
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.79 E-value=0.17 Score=49.05 Aligned_cols=102 Identities=11% Similarity=0.114 Sum_probs=55.8
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHH-HHHHhhccC---CCCCCc-EEEEEEeCCCC-CHHHHHHHHHHHhCCCCC--
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLL-TQINNSFLH---TPNDFD-FVIWEVVSRDL-QLGKIQESIAKKIGLYNE-- 230 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~-- 230 (427)
.++.|.. .....++|.|.+|+|||+|| ..+.+.... ...+.+ .++++-+++.. ...++.+.+...=.+...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 3444432 34456899999999999994 566666520 012334 46777777654 455666666542211100
Q ss_pred --CCCCCCHHHHH------HHHHHHh--cCCcEEEEEeccC
Q 042645 231 --SWDNKSFDEKA------QEIFKTM--RNRKIVLLLDDIW 261 (427)
Q Consensus 231 --~~~~~~~~~~~------~~l~~~L--~~k~~LlVlDdv~ 261 (427)
.....+..... -.+-+++ +++.+||++||+-
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 00111211111 1223333 4799999999984
No 330
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.79 E-value=0.034 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.5
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHh
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
.....|+|+|.+|+|||||...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556799999999999999998864
No 331
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.78 E-value=0.12 Score=49.59 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=57.5
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCC-CCcEEEEEEeCCCC-CHHHHHHHHHHHhCCCCC----CC
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPN-DFDFVIWEVVSRDL-QLGKIQESIAKKIGLYNE----SW 232 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~~~~~-~~~~l~~~i~~~l~~~~~----~~ 232 (427)
.++.|.. .....++|.|.+|+|||+|+..++++....+. .-+.++++-+++.. ...++..++...=.+... ..
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3444432 23456888999999999999999988632111 11356677776543 456666666654211110 00
Q ss_pred CCCCHHHH------HHHHHHHh---cCCcEEEEEeccC
Q 042645 233 DNKSFDEK------AQEIFKTM---RNRKIVLLLDDIW 261 (427)
Q Consensus 233 ~~~~~~~~------~~~l~~~L---~~k~~LlVlDdv~ 261 (427)
...+.... .-.+-+++ +++.+||++||+-
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11222111 11233344 3799999999973
No 332
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.78 E-value=0.025 Score=50.44 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|.|..|+||||+++.+.+.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998876
No 333
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.75 E-value=0.034 Score=45.62 Aligned_cols=24 Identities=38% Similarity=0.346 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 468999999999999999987654
No 334
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.73 E-value=0.072 Score=49.61 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=22.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+..+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998654
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.045 Score=45.86 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998764
No 336
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.72 E-value=0.041 Score=51.85 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++|+|.|+.|+|||||+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999998876
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.69 E-value=0.17 Score=59.07 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=73.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-CCHHHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDN-KSFDEKAQEIFKTM 248 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~-~~~~~~~~~l~~~L 248 (427)
+-+.++|++|+|||++|+.+.... ..+ ....++++...+...+...+-..+......... ..+ .-
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P---------~~ 1333 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP---------KS 1333 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE---------BS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC---------CC
Confidence 468899999999999998776654 122 345677777777777666666554321100000 000 00
Q ss_pred cCCcEEEEEeccCCc--cc------ccccccCCCC-----CC-------CCcEEEEecCChh------H-HhhcCCCcce
Q 042645 249 RNRKIVLLLDDIWEL--FD------LAQVGLPVPS-----RA-------SASKVVFTTREFE------V-CGLMDAHKSF 301 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~--~~------~~~~~~~l~~-----~~-------~gs~IivTtR~~~------v-~~~~~~~~~~ 301 (427)
.+++++|.+||+.-. +. .+-++..+.. .. .+..+|.++.... + .........+
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi 1413 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAIL 1413 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEE
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEE
Confidence 367899999996421 11 1111111110 01 1233444443321 1 1111222567
Q ss_pred eccCCChHHHHHHHHHHh
Q 042645 302 KVECLGYEDAWRLFEEKV 319 (427)
Q Consensus 302 ~l~~L~~~e~~~lf~~~~ 319 (427)
.++..+.++-..+|....
T Consensus 1414 ~i~~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 889999999888888765
No 338
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.65 E-value=0.048 Score=44.86 Aligned_cols=26 Identities=38% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45679999999999999999997643
No 339
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.65 E-value=0.04 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 340
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.65 E-value=0.038 Score=44.76 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358899999999999999998654
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.64 E-value=0.034 Score=49.53 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..+++|.|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998754
No 342
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.64 E-value=0.044 Score=51.07 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998644
No 343
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.61 E-value=0.04 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|+|.+|+|||||...+....
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999998653
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.61 E-value=0.038 Score=46.14 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998654
No 345
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.55 E-value=0.051 Score=47.01 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.....|.|.|+.|+||||+++.+.+.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 346
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.54 E-value=0.05 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
+...|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999765
No 347
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.54 E-value=0.061 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.+.|.|.+|+||||++..+...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988877655
No 348
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.54 E-value=0.041 Score=44.53 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987653
No 349
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.53 E-value=0.25 Score=43.04 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+.|+|+.|.|||.+|..+....
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7889999999999998887664
No 350
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.53 E-value=0.06 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 351
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.53 E-value=0.06 Score=45.52 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
+...|+|+|.+|+|||||+..+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999998653
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.52 E-value=0.05 Score=46.65 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|.|+|.+|+|||||+..+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998764
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.51 E-value=0.049 Score=45.28 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.+|+|+.|+|||||+..++--+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999987654
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.51 E-value=0.041 Score=44.80 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999988653
No 355
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.50 E-value=0.043 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998753
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.49 E-value=0.042 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999987654
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.49 E-value=0.042 Score=44.56 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||...+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999998653
No 358
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.48 E-value=0.042 Score=44.71 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998764
No 359
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.46 E-value=0.051 Score=47.21 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|+.|+||||+++.+.+.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999887
No 360
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.46 E-value=0.035 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 042645 171 IVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-|+|+|.+|+|||||+..+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998654
No 361
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.46 E-value=0.043 Score=44.72 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 042645 171 IVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-|+|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999864
No 362
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.43 E-value=0.033 Score=50.79 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45689999999999999999987654
No 363
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.40 E-value=0.055 Score=45.18 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3578999999999999999998764
No 364
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.40 E-value=0.045 Score=44.30 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEecCCCcHHHHHHHHHhhc
Q 042645 172 VGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~ 193 (427)
|+|+|.+|+|||||+..+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987653
No 365
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.39 E-value=0.046 Score=44.47 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 358899999999999999987653
No 366
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.39 E-value=0.043 Score=44.73 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHh
Q 042645 171 IVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~ 191 (427)
-|+|+|.+|+|||||+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999864
No 367
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.39 E-value=0.044 Score=45.17 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568999999999999999987654
No 368
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.38 E-value=0.042 Score=47.66 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.|++|+||||+|+.+.+.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 369
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.38 E-value=0.089 Score=46.11 Aligned_cols=39 Identities=26% Similarity=0.253 Sum_probs=28.2
Q ss_pred EEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC
Q 042645 172 VGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ 213 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 213 (427)
|+|.|-||+||||+|..++..+. ..+ ..++-+......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la-~~g--~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMA-SDY--DKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHT-TTC--SCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHH-HCC--CeEEEEeCCCCcC
Confidence 66699999999999999998883 222 3466666654444
No 370
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.36 E-value=0.045 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999998877653
No 371
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.36 E-value=0.047 Score=44.98 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+.+..
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999988763
No 372
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.35 E-value=0.045 Score=44.96 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-|+|+|.+|+|||||...+....
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999997653
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.35 E-value=0.039 Score=50.75 Aligned_cols=26 Identities=46% Similarity=0.625 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++++|.|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 35799999999999999999998653
No 374
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.34 E-value=0.15 Score=43.45 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..|+|-|..|+||||+++.+.+.+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999999988
No 375
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.32 E-value=0.05 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 358899999999999999987653
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.28 E-value=0.052 Score=50.62 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45689999999999999999987644
No 377
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.28 E-value=0.046 Score=45.51 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999988654
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.26 E-value=0.053 Score=50.58 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 44689999999999999999998644
No 379
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.25 E-value=0.07 Score=46.13 Aligned_cols=108 Identities=15% Similarity=0.043 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTM 248 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L 248 (427)
..+..++|.-|.||||-+.....+.. . ... .++.+....+.. .- ..+.+.++.........+..++.+ ..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~-~-~g~-kvli~kp~~D~R--yg-~~i~sr~G~~~~a~~i~~~~di~~----~~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ-I-AQY-KCLVIKYAKDTR--YS-SSFCTHDRNTMEALPACLLRDVAQ----EA 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-T-TTC-CEEEEEETTCCC--C------------CEEEEESSGGGGHH----HH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH-H-CCC-eEEEEeecCCcc--ch-HHHHhhcCCeeEEEecCCHHHHHH----Hh
Confidence 46899999999999988777666652 1 222 333333322211 11 234444444322111112222222 22
Q ss_pred cCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCCh
Q 042645 249 RNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREF 289 (427)
Q Consensus 249 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~ 289 (427)
++--+|++|++.-.....++...+.+ .|..||+|.++.
T Consensus 89 -~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG 126 (234)
T ss_dssp -TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred -ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence 23339999998643333333323322 467899999983
No 380
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.22 E-value=0.048 Score=50.78 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998654
No 381
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.22 E-value=0.045 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998765
No 382
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.22 E-value=0.058 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+++|+|++|+|||||...+....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998654
No 383
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.21 E-value=0.081 Score=47.74 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=27.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCC
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSR 210 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~ 210 (427)
++|+|.|-||+||||+|..++..+.. .+ ..++-+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~-~G--~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE-MG--KKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH-TT--CCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH-CC--CeEEEEecCC
Confidence 67888999999999999999887732 22 2355555543
No 384
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.20 E-value=0.055 Score=50.56 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999998654
No 385
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.18 E-value=0.051 Score=45.57 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...|+|+|.+|+|||||...+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999864
No 386
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.17 E-value=0.05 Score=45.49 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 468899999999999998887653
No 387
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.17 E-value=0.051 Score=44.16 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999988643
No 388
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.17 E-value=1.8 Score=40.10 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||...+....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999987654
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.16 E-value=0.074 Score=50.01 Aligned_cols=113 Identities=14% Similarity=0.125 Sum_probs=57.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFK 246 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 246 (427)
....+++|+|+.|+|||||++.+....... .-..++++.-.-..... ...+.-.......+.......+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFK-------HKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCC-------CSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhc-------cCceEEEeeecCCCHHHHHHHHHH
Confidence 455789999999999999999988765210 01122232211000000 000000000000011122345667
Q ss_pred HhcCCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChhH
Q 042645 247 TMRNRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFEV 291 (427)
Q Consensus 247 ~L~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~v 291 (427)
.|...+=+|++|++.+........... ..|..|+.|+...+.
T Consensus 205 ~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~ 246 (372)
T 2ewv_A 205 ALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 246 (372)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSH
T ss_pred HhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchH
Confidence 777778899999997544333322221 345668888776553
No 390
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.15 E-value=0.22 Score=43.35 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=51.3
Q ss_pred HHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCC-cEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC----
Q 042645 157 LDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDF-DFVIWEVVSRDLQLGKIQESIAKKIGLYNES---- 231 (427)
Q Consensus 157 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~---- 231 (427)
..+++..+..+ +.+.|.|+.|+||||+.....-+........ ...+.+.........++...+...++.....
T Consensus 66 q~~~i~~i~~g--~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~ 143 (235)
T 3llm_A 66 ESEILEAISQN--SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGY 143 (235)
T ss_dssp HHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEE
T ss_pred HHHHHHHHhcC--CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEE
Confidence 44455555444 5799999999999987655432211111211 2223222222222334444444443322100
Q ss_pred --------------CCCCCHHHHHHHHHHHhcCCcEEEEEeccCCc
Q 042645 232 --------------WDNKSFDEKAQEIFKTMRNRKIVLLLDDIWEL 263 (427)
Q Consensus 232 --------------~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 263 (427)
..-.++..+...+...+. +--+||+|+++..
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~-~~~~lVlDEah~~ 188 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEAGIR-GISHVIVDEIHER 188 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHHCCT-TCCEEEECCTTSC
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHhhhc-CCcEEEEECCccC
Confidence 001234555565555443 3348899999863
No 391
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.14 E-value=0.052 Score=45.43 Aligned_cols=24 Identities=38% Similarity=0.315 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 468899999999999997776554
No 392
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.13 E-value=0.057 Score=50.72 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 44689999999999999999998654
No 393
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.11 E-value=0.057 Score=53.24 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|++|+||||+|+.+...+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998776
No 394
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.10 E-value=0.054 Score=44.96 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999988654
No 395
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.08 E-value=0.033 Score=58.07 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=37.0
Q ss_pred CccccchhhHHHHHHHhcc-------------CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 148 PTVVGMQSTLDRVWRCLTE-------------EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 148 ~~~vGR~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++|.+..++.|.+.+.- .....+.++|++|+|||+||+.+++..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 4568888888888877642 134568899999999999999999887
No 396
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.08 E-value=0.053 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999997643
No 397
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.06 E-value=0.053 Score=44.51 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+.+..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998654
No 398
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.05 E-value=0.056 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999987543
No 399
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.05 E-value=0.059 Score=50.53 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 44689999999999999999998644
No 400
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.04 E-value=0.1 Score=51.68 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=31.7
Q ss_pred cccchhhHHHHHHHh--ccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 150 VVGMQSTLDRVWRCL--TEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 150 ~vGR~~~~~~l~~~l--~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+.|.+....+.+.. ......+|.+.|++|+||||+|+.+...+
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 344554555555554 22345789999999999999999998876
No 401
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.04 E-value=0.084 Score=48.08 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=26.1
Q ss_pred HHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+++|.+.+. ..+++|.|+.|+|||||++.+. ..
T Consensus 156 i~~L~~~l~---G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE---GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT---TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc---CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 455655553 3589999999999999999998 54
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.02 E-value=0.054 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 403
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.01 E-value=0.054 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58899999999999999998654
No 404
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.97 E-value=0.043 Score=45.20 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358899999999999999988653
No 405
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.95 E-value=0.049 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 44689999999999999999998654
No 406
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.93 E-value=0.055 Score=50.77 Aligned_cols=26 Identities=35% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34689999999999999999998654
No 407
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.93 E-value=0.059 Score=44.49 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568999999999999999998543
No 408
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.92 E-value=0.057 Score=45.02 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998653
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.92 E-value=0.046 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+....
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999987653
No 410
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.86 E-value=0.059 Score=44.61 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHhhc
Q 042645 171 IVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-|+|+|.+|+|||||+..+.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987543
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.86 E-value=0.13 Score=47.79 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....+++|.|+.|+|||||++.+.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999999886
No 412
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.84 E-value=0.058 Score=45.17 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988754
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.84 E-value=0.059 Score=44.59 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-|+|+|.+|+|||||+..+....
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468899999999999999998654
No 414
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.84 E-value=0.06 Score=45.36 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=20.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+.+..
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468899999999999999877654
No 415
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.83 E-value=0.51 Score=46.29 Aligned_cols=56 Identities=21% Similarity=0.239 Sum_probs=38.5
Q ss_pred HHHHhcc-CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCC-CHHHHHHH
Q 042645 160 VWRCLTE-EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDL-QLGKIQES 220 (427)
Q Consensus 160 l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~-~~~~l~~~ 220 (427)
.++.|.. .....++|.|..|+|||+|+..+.+.. +-+.++++-+++.. ...+++.+
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 4555543 345679999999999999999998864 22567777777652 34444444
No 416
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.82 E-value=0.06 Score=44.38 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999988653
No 417
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.81 E-value=0.09 Score=52.41 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|++|+||||+|+.+.+.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998886
No 418
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.81 E-value=0.061 Score=44.39 Aligned_cols=24 Identities=33% Similarity=0.288 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999987653
No 419
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.79 E-value=0.07 Score=45.41 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+|.|.|+.|+||||+++.+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 420
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.79 E-value=0.06 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|+|+.|+|||||++.+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 421
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.78 E-value=0.061 Score=45.22 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=20.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
--|+|+|.+|+|||||...+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998753
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.76 E-value=0.065 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468899999999999999988754
No 423
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.75 E-value=0.063 Score=45.92 Aligned_cols=111 Identities=15% Similarity=0.052 Sum_probs=51.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKT 247 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 247 (427)
...+..++|.-|.||||.+.....+.. . ... .++.+..... ...-...+.+.++.........+.. .+.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~-~-~g~-kVli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ-F-AKQ-HAIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH-H-TTC-CEEEEECC-------------------CCEEECSSGG----GGGGG
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-H-CCC-EEEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence 346889999999999999988877762 1 222 2333332211 1111223444444332211111211 22233
Q ss_pred hcCCcEEEEEeccCCc--ccccccccCCCCCCCCcEEEEecCChh
Q 042645 248 MRNRKIVLLLDDIWEL--FDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 248 L~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
+.++--+|++|++.-. +..+.+ ..+. ..|..||+|.++.+
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLDQD 139 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECSBC
T ss_pred HhcCCCEEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEecccc
Confidence 3333349999998643 223222 2211 13678999999643
No 424
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.73 E-value=0.062 Score=45.43 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+....
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3568999999999999999987653
No 425
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.73 E-value=0.071 Score=46.71 Aligned_cols=50 Identities=18% Similarity=0.109 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHH
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESI 221 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i 221 (427)
...++.|.|.+|+|||+||.+++.+.. ...-..+++++... +..++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~--~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA--EEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH--HHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--HhcCCCceeecccC--CHHHHHHHH
Confidence 456899999999999999988764421 11123455665443 345554443
No 426
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.72 E-value=0.071 Score=44.28 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=22.3
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.....|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999997654
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.72 E-value=0.064 Score=44.17 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 428
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.70 E-value=0.065 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998754
No 429
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.065 Score=44.90 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999997654
No 430
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.081 Score=44.46 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.0
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..--|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568999999999999999988653
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.68 E-value=0.066 Score=45.44 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999987654
No 432
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.67 E-value=0.063 Score=45.43 Aligned_cols=25 Identities=40% Similarity=0.434 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987654
No 433
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.67 E-value=0.086 Score=43.32 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..-|.|.|.+|+||||||..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 457899999999999999998764
No 434
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.67 E-value=0.046 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|.|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998643
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.66 E-value=0.083 Score=44.74 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.6
Q ss_pred eEEEEE-ecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCC
Q 042645 170 GIVGLY-GMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQ 213 (427)
Q Consensus 170 ~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~ 213 (427)
++|+|+ +-||+||||++..++..+.. .-..++-+......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCC
Confidence 577787 67999999999999888732 223456666654433
No 436
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.65 E-value=0.046 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=21.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
.....|+|+|.+|+|||||...+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999887654
No 437
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.63 E-value=0.052 Score=45.62 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
..--|+|+|.+|+|||||+..+...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999998643
No 438
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.58 E-value=0.069 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 4568999999999999999998754
No 439
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.58 E-value=0.082 Score=49.08 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.4
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+..+|+|+|.+|+|||||+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999987654
No 440
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.58 E-value=0.17 Score=47.09 Aligned_cols=27 Identities=33% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
+...++...|-||+||||++..++..+
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~l 42 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQM 42 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHH
Confidence 344566677999999999999888776
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.56 E-value=0.052 Score=45.78 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=19.9
Q ss_pred CeEEEEEecCCCcHHHHHHHHHh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
..-|+|+|.+|+|||||+..+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999999853
No 442
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.56 E-value=0.067 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999988654
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.55 E-value=0.069 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468899999999999999998654
No 444
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.54 E-value=0.068 Score=44.93 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468899999999999999998764
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.53 E-value=0.069 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999987654
No 446
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.53 E-value=0.073 Score=48.46 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 458999999999999999999865
No 447
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.53 E-value=0.079 Score=50.01 Aligned_cols=25 Identities=44% Similarity=0.582 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
...+++|.|+.|+|||||++.++.-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCChHHHHHHHHhCC
Confidence 4568999999999999999998753
No 448
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.52 E-value=0.066 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...++|+|+.|+|||||++.+....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998866
No 449
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.49 E-value=0.069 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||+..+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998654
No 450
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.49 E-value=0.07 Score=44.72 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
No 451
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.46 E-value=0.085 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|.|.|+.|+||||+++.+.+.+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999988
No 452
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.46 E-value=0.063 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.7
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 042645 171 IVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-|+|+|..|+|||||...++..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4599999999999999997653
No 453
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.43 E-value=0.071 Score=44.15 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-.|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 454
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.41 E-value=0.072 Score=44.57 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358899999999999999988654
No 455
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.41 E-value=0.072 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC--
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468899999999999999987543
No 456
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.41 E-value=0.073 Score=44.56 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=21.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.40 E-value=0.089 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhh
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999998765
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.39 E-value=0.07 Score=44.35 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.9
Q ss_pred EEEEecCCCcHHHHHHHHHhh
Q 042645 172 VGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 172 i~I~G~gGiGKTtLa~~v~~~ 192 (427)
+.|+|.+|+||||+|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999998754
No 459
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.35 E-value=0.094 Score=46.86 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||...+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578999999999999999987653
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.33 E-value=0.076 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-|+|+|.+|+|||||+..+....
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 568999999999999999987543
No 461
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.32 E-value=0.16 Score=46.85 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhcc
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFL 194 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 194 (427)
+...++.+.|-||+||||++..++..+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA 44 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMS 44 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3456777789999999999999887773
No 462
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.31 E-value=0.077 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999987654
No 463
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.31 E-value=0.073 Score=44.88 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998754
No 464
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.30 E-value=0.079 Score=44.46 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.3
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3468999999999999999997643
No 465
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.29 E-value=0.077 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.26 E-value=0.16 Score=47.68 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCeEEEEEe-cCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 042645 168 PVGIVGLYG-MGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS 209 (427)
Q Consensus 168 ~~~vi~I~G-~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 209 (427)
+.++|+|+| -||+||||+|..++..+.. .-..++.+...
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~---~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHAN---MGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHH---HTCCEEEEECC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHh---CCCCEEEEECC
Confidence 568899985 9999999999998887732 12346666655
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.26 E-value=0.076 Score=44.79 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...-|+|+|.+|+|||||+..+....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34578999999999999999987653
No 468
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.24 E-value=0.16 Score=44.34 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=27.7
Q ss_pred CCeEEEEE-ecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 042645 168 PVGIVGLY-GMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS 209 (427)
Q Consensus 168 ~~~vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 209 (427)
..++|+|+ +-||+||||++..++..+.. . .-..++.+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~-~g~~VlliD~D 43 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ-E-PDIHVLAVDIS 43 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT-S-TTCCEEEEECC
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh-C-cCCCEEEEECC
Confidence 35678887 46899999999999988832 1 12345556554
No 469
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=92.21 E-value=0.073 Score=44.69 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||+..+.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34679999999999999999987654
No 470
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.20 E-value=0.08 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEecCCCcHHHHHHHHHhh
Q 042645 171 IVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 171 vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
-|.|+|.+|+|||+|+..+.+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999998754
No 471
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.15 E-value=0.08 Score=45.32 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
--|+|+|.+|+|||||+..+.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998764
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.13 E-value=0.087 Score=51.25 Aligned_cols=26 Identities=15% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.++|++|+||||+++.+.+..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998775
No 473
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.08 E-value=0.082 Score=45.32 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINN 191 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~ 191 (427)
--|+|+|.+|+|||||+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999874
No 474
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.06 E-value=0.088 Score=44.07 Aligned_cols=24 Identities=38% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998653
No 475
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.04 E-value=0.083 Score=46.16 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||+..+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 34679999999999999999998754
No 476
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.04 E-value=0.13 Score=46.78 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=26.5
Q ss_pred HHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 157 LDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 157 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
++++.+.+. ..+++|.|+.|+|||||.+.+....
T Consensus 160 v~~lf~~l~---geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK---GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS---SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc---CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555553 3589999999999999999997654
No 477
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.03 E-value=0.12 Score=41.63 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=20.5
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhh
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
.++.+|+|+.|+||||+...++--
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999887643
No 478
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.02 E-value=0.088 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.-|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988654
No 479
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.02 E-value=0.067 Score=49.42 Aligned_cols=105 Identities=15% Similarity=0.038 Sum_probs=54.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIAKKIGLYNESWDNKSFDEKAQEIFKTMR 249 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~ 249 (427)
..++|+|+.|+|||||++.+..... . -...+.+.-......... -..++.- .. ........+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~-~~g~i~i~~~~e~~~~~~----~~~i~~~----~g-gg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---K-EERIISIEDTEEIVFKHH----KNYTQLF----FG-GNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---T-TSCEEEEESSCCCCCSSC----SSEEEEE----CB-TTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---C-CCcEEEECCeeccccccc----hhEEEEE----eC-CChhHHHHHHHHhh
Confidence 4799999999999999999987762 1 223444332211110000 0000000 00 11223344556677
Q ss_pred CCcEEEEEeccCCcccccccccCCCCCCCCcEEEEecCChh
Q 042645 250 NRKIVLLLDDIWELFDLAQVGLPVPSRASASKVVFTTREFE 290 (427)
Q Consensus 250 ~k~~LlVlDdv~~~~~~~~~~~~l~~~~~gs~IivTtR~~~ 290 (427)
.++=+|+||++-+...++.+ ..+.. .+..+|+||...+
T Consensus 239 ~~p~ilildE~~~~e~~~~l-~~~~~--g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSSEAYDFY-NVLCS--GHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCSTHHHHHH-HHHHT--TCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChHHHHHHH-HHHhc--CCCEEEEEEcccH
Confidence 78889999998764333322 22221 1223666665543
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.00 E-value=0.09 Score=44.48 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.2
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.--|+|+|.+|+|||||+..+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 3468999999999999999987653
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.99 E-value=0.089 Score=44.77 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=20.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999988653
No 482
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.077 Score=51.35 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+++|+|+.|+|||||++.++.-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45689999999999999999987654
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.92 E-value=0.072 Score=44.67 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=19.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999987543
No 484
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.90 E-value=0.094 Score=44.30 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468899999999999999988654
No 485
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=91.86 E-value=0.097 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|++|+||||+|+.+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998876
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.84 E-value=0.091 Score=44.65 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.4
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3578999999999999999988653
No 487
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=91.84 E-value=0.14 Score=52.04 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=37.5
Q ss_pred hhHHHHHHHhccCCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHHHHHHHHH
Q 042645 155 STLDRVWRCLTEEPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLGKIQESIA 222 (427)
Q Consensus 155 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~~l~~~i~ 222 (427)
...+.+...|... .+..|+||||.|||+.+..+...+... ...+.++...+....+++..+.
T Consensus 193 ~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHH
Confidence 3445555555433 468899999999997665554444221 1245666665555666666554
No 488
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.82 E-value=0.068 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
-.|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 568999999999999999987654
No 489
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=91.76 E-value=0.15 Score=51.15 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=28.8
Q ss_pred CCCeEEEEEecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeC
Q 042645 167 EPVGIVGLYGMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVS 209 (427)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~ 209 (427)
+..+++.+.|.||+||||+|..++..+.. . -..++.|...
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~-~--G~rVLlvd~D 45 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAE-Q--GKRVLLVSTD 45 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEECC
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHH-C--CCcEEEEECC
Confidence 45678899999999999999998877732 1 2235555544
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.75 E-value=0.11 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+.+..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999987653
No 491
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.74 E-value=0.096 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
.+++|+|++|+|||||+..+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 589999999999999999998655
No 492
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.74 E-value=0.2 Score=42.76 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=28.8
Q ss_pred EEEEE-ecCCCcHHHHHHHHHhhccCCCCCCcEEEEEEeCCCCCHH
Q 042645 171 IVGLY-GMGGVGKTTLLTQINNSFLHTPNDFDFVIWEVVSRDLQLG 215 (427)
Q Consensus 171 vi~I~-G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~~~~~~~~ 215 (427)
+|+|+ +-||+||||++..++..+. .. - .++-+......+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la-~~--g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLA-LQ--G-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-TT--S-CEEEEEECTTCHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH-hc--C-CEEEEECCCCCCHH
Confidence 45664 7899999999999998883 22 2 56667766554443
No 493
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.72 E-value=0.18 Score=46.34 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
..++...|-||+||||+|..++..+
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~l 38 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWM 38 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHH
Confidence 3567777999999999999988776
No 494
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.66 E-value=0.13 Score=44.41 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|.|.|+.|+||||+++.+++.+
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999887
No 495
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.65 E-value=0.056 Score=44.73 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=9.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
--|+|+|.+|+|||||+..+.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 496
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.62 E-value=0.095 Score=47.85 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 169 VGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...|+|+|.+|+|||||...+....
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999988653
No 497
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.58 E-value=0.16 Score=43.02 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
...+|+|+|++|+||+|+|..+.+.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 45799999999999999999987755
No 498
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=91.42 E-value=0.1 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHhhc
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
--|+|+|.+|+|||||+..+....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 499
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=91.40 E-value=0.23 Score=44.83 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCcHHHHHHHHHhhc
Q 042645 168 PVGIVGLYGMGGVGKTTLLTQINNSF 193 (427)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 193 (427)
....|+|+|.+|+|||||...+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 45689999999999999999998654
No 500
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.40 E-value=0.12 Score=45.72 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHhh
Q 042645 170 GIVGLYGMGGVGKTTLLTQINNS 192 (427)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~v~~~ 192 (427)
+.|+|+|.+|+|||||...+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999998765
Done!