Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>042646
MQDIPLKTNSCAESTIDISSNSDLIPESTVDNNSSLIEAQYNSGLAYLENKKKVKGQQNQ
NRDNAPTMDSTESTVDVSSNPGLIEACDNSPLMRSGNKKNRKRRRRKRKSSAPKTDNTDA
DLQEVTSKTMTAPFGMALVDMITKAVSETDPLEVEASGDTSLKPVLAAAPKETNGSVDTS
VKLDFPKNLSRSKRKRLRRKLHKESLHVLERDAKDCALAGDKSLKNNMLQEKHSSLQPSV
DICSQNELVVKQSNGDVCLFNGHNAFENNGVIDLHMANGKQLEKKEAKCAPKVTELDLTT
MRKDFPISEKQSSSSNSANRSLMENDDVHPESHPVSSETRTIIAYKRKKRVKTYIWTKKK
KCSNLLVNGVDCIKEDGDSLMKNVSLLTEGHIEQKLSDKLDKIQITVHDASHGNDVSDEI
PSHPKEYNISGHDRSCKLPKKQHVEVETKTTEGFPPSHLGVVESGTGLHDSSEEENHSQT
LQYPPGNVCIGHSKKKLLVLDLNGLLVDIVASPYHRYRPDKMVSNKAVFKRPCCDEFLSF
CFERFNVGVWSRGSRKIWTM

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042646
        (560 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2091823 - symbol:AT3G29760 "AT3G29760" species...   128  4.2e-06   2


>TAIR|locus:2091823 [details] [associations]
            symbol:AT3G29760 "AT3G29760" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR004274 Pfam:PF03031 PROSITE:PS50969
            SMART:SM00577 EMBL:CP002686 Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 GO:GO:0016787 IPI:IPI00544063 RefSeq:NP_189619.2
            UniGene:At.36864 ProteinModelPortal:F4J488 SMR:F4J488 PRIDE:F4J488
            EnsemblPlants:AT3G29760.1 GeneID:822663 KEGG:ath:AT3G29760
            OMA:VKNNDSC Uniprot:F4J488
        Length = 465

 Score = 128 (50.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query:   510 VASPYHRYRPDKMVSNKAVFKRPCCDEFLSFCFERFNVGVWSRGSRK 556
             + +P      D  +  +A+FKRP CDEFL FCF++F VG+WS  SRK
Sbjct:   320 IVTPLKDVPADINIGRRAIFKRPFCDEFLRFCFDKFEVGIWS--SRK 364

 Score = 54 (24.1 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query:   216 CALAGDKSLKNNMLQEKHSSLQPSVDICSQNELVVKQSNGDVCLFNGHNAFENN 269
             C ++G+++++ N    K  S+  +V   S +E+ V ++N D C+ +G    E N
Sbjct:   220 CVVSGEETIEKN----KEGSVISAVT--SNDEVPVVKNN-DSCVVSGDETIEKN 266

 Score = 53 (23.7 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
 Identities = 15/54 (27%), Positives = 30/54 (55%)

Query:   216 CALAGDKSLKNNMLQEKHSSLQPSVDICSQNELVVKQSNGDVCLFNGHNAFENN 269
             C ++G+++++ N    K  S+  +V   S +E+ V ++N D C+ +G    E N
Sbjct:   150 CVVSGEETIEKN----KEGSVISAVT--SNDEVPVVKNN-DSCVVSGDETVEKN 196

 Score = 52 (23.4 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query:   216 CALAGDKSLKNNMLQEKHSSLQPSVDICSQNELVVKQSNGDVCLFNGHNAFENN 269
             C ++GD++++ N   E+   +   + + S +E+ V ++N D C+ +G    E N
Sbjct:   185 CVVSGDETVEKN---EEGCVI---LAVTSSDEVPVVKNN-DSCVVSGEETIEKN 231

 Score = 52 (23.4 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
 Identities = 14/54 (25%), Positives = 30/54 (55%)

Query:   216 CALAGDKSLKNNMLQEKHSSLQPSVDICSQNELVVKQSNGDVCLFNGHNAFENN 269
             C ++GD++++ N   E+   +   + + S +E+ V ++N D C+ +G    E N
Sbjct:   115 CVVSGDETVEKN---EEGCVI---LAVTSSDEVPVVKNN-DSCVVSGEETIEKN 161

 Score = 41 (19.5 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query:   242 ICSQNELVVKQSNGDVCLFNGHNAFENN 269
             + S +E+ V ++N D C+ +G    E N
Sbjct:   100 VTSSDEVPVVKNN-DSCVVSGDETVEKN 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      560       490   0.00082  119 3  11 23  0.48    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  292 KB (2151 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.33u 0.08s 43.41t   Elapsed:  00:00:02
  Total cpu time:  43.33u 0.08s 43.41t   Elapsed:  00:00:02
  Start:  Fri May 10 18:16:47 2013   End:  Fri May 10 18:16:49 2013

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