BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042646
         (560 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
           iridescent virus 3 GN=IIV3-104L PE=3 SV=1
          Length = 186

 Score = 45.1 bits (105), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 11/74 (14%)

Query: 493 SKKKLLVLDLNGLLV---DI--------VASPYHRYRPDKMVSNKAVFKRPCCDEFLSFC 541
           +KKKL++LDL+  L+   D+        ++    ++R  +M     +F+RP   EFL + 
Sbjct: 4   NKKKLILLDLDNTLICAEDLDTVKDKKRLSQAQKQFRTVRMEDYYDIFERPHLQEFLDYL 63

Query: 542 FERFNVGVWSRGSR 555
           F+ F VGVW+  S+
Sbjct: 64  FKNFKVGVWTASSK 77


>sp|Q27173|T2A_PARTE Trichocyst matrix protein T2-A OS=Paramecium tetraurelia GN=T2A
           PE=1 SV=2
          Length = 386

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 12/90 (13%)

Query: 117 NTDADLQEVTSKTMTAPFGMALVDMITKAVSETDPLEVEASGDTSLKPVLAAAPKETNG- 175
           +T AD+     K   +PFG  L D I   +   DPL+   S  T L+    A  KE +  
Sbjct: 16  STQADVIATIKKIDQSPFGRTLFDTIYLELQTGDPLDRLLSTLTDLEDRYVAEQKEDDAK 75

Query: 176 --------SVDTSVKLDFPKNLSRSKRKRL 197
                   +VD S    F K+L+ S RK++
Sbjct: 76  NQEYQGACTVDISA---FDKDLAESNRKKI 102


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.127    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,619,249
Number of Sequences: 539616
Number of extensions: 9228467
Number of successful extensions: 25418
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 25235
Number of HSP's gapped (non-prelim): 289
length of query: 560
length of database: 191,569,459
effective HSP length: 123
effective length of query: 437
effective length of database: 125,196,691
effective search space: 54710953967
effective search space used: 54710953967
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)