BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042647
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13775|SYEC_SCHPO Probable glutamate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC17A5.15c PE=1
SV=1
Length = 716
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 9/62 (14%)
Query: 42 GNAIVEQISRNQDGNFTGV---VHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKK 92
GNA V +I+R+ G T + +HL+G +K T K+TWL + ++LV FDYLITK
Sbjct: 583 GNAYVREINRDASGKVTSLKLELHLDGDFKKTEKKVTWLADTEDKTPVDLVDFDYLITKD 642
Query: 93 KV 94
K+
Sbjct: 643 KL 644
>sp|Q54KB8|SYEC_DICDI Probable glutamate--tRNA ligase, cytoplasmic OS=Dictyostelium
discoideum GN=gluS PE=2 SV=1
Length = 764
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 10/63 (15%)
Query: 42 GNAIVEQISRNQDGN---FTGVVHLEG-YKTTVLKLTWLLE------IIELVGFDYLITK 91
GNAIVE + RN++G+ TG +HLEG K T KL+WL + L +DY+ITK
Sbjct: 602 GNAIVETLQRNENGDVVSMTGKLHLEGDVKKTDKKLSWLSSDCADTVTVVLQDYDYIITK 661
Query: 92 KKV 94
K+
Sbjct: 662 PKL 664
>sp|P46655|SYEC_YEAST Glutamate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GUS1 PE=1 SV=3
Length = 708
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 8/59 (13%)
Query: 42 GNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLEI-----IELVGFDYLITKKKV 94
GN I+ + +N DG+ ++LEG +K T KLTWL + ++LV FD+LITK ++
Sbjct: 579 GNVIITK--KNDDGSMVAKLNLEGDFKKTKHKLTWLADTKDVVPVDLVDFDHLITKDRL 635
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 8/50 (16%)
Query: 4 HHQIRSNYKIYLTY--------GLTFVSFSLRSSEYNARNAQYHMIGNAI 45
HH+ S +KIY TY + V+ +LR+ EY RNAQY + A+
Sbjct: 369 HHRTGSTWKIYPTYDFCVPIVDAIEGVTHALRTIEYRDRNAQYDWMLQAL 418
>sp|Q8SSE4|SYEC_ENCCU Probable glutamate--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU02_1210 PE=3 SV=1
Length = 642
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 4 HHQIRSNYKIYLTY--------GLTFVSFSLRSSEYNARNAQYH 39
HH+ YK+Y TY L ++ SLR++EY RN QY+
Sbjct: 313 HHRTGDKYKVYPTYDFACPIVDSLEGITLSLRANEYRDRNQQYY 356
>sp|A9CSZ1|SYEC_ENTBH Probable glutamate--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_22577 PE=3 SV=1
Length = 631
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 2 RSHHQIRSNYKIYLTY--------GLTFVSFSLRSSEYNARNAQYH 39
+ H+ ++ YKIY TY L V+ +LR++EY RN QY+
Sbjct: 296 KEHNITKNKYKIYPTYDFACPIIDSLDGVTLALRTNEYRDRNEQYY 341
>sp|Q9Y105|SYQ_DROME Probable glutamine--tRNA ligase OS=Drosophila melanogaster
GN=Aats-gln PE=1 SV=1
Length = 778
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAI 45
SHH+ S++ IY TY T ++ SL + E+ +R + Y+ + NA+
Sbjct: 427 SHHRTGSDWCIYPTYDYTHCLCDSLEDITHSLCTKEFQSRRSSYYWLCNAL 477
>sp|A8LIJ9|SYM_DINSH Methionine--tRNA ligase OS=Dinoroseobacter shibae (strain DFL 12)
GN=metG PE=3 SV=1
Length = 572
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 5 HQIRSNYKIYLTYGLTFVSFSLRSSEYNARNAQY---HMIGNAIVEQISRNQ-----DGN 56
H ++S+ I +GL+F F SSE N QY + N ++E++S Q DG
Sbjct: 75 HAVQSD--IAKRFGLSFDHFGRSSSERNKALTQYFAGKLAENGLIEEVSEKQVYSHADGR 132
Query: 57 FTGVVHLEG 65
F ++EG
Sbjct: 133 FLPDRYIEG 141
>sp|Q0VPK5|MTNB_ALCBS Methylthioribulose-1-phosphate dehydratase OS=Alcanivorax
borkumensis (strain SK2 / ATCC 700651 / DSM 11573)
GN=mtnB PE=3 SV=1
Length = 211
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 54 DGNFTGVVHLEGYKTTVLKLTWLLEIIELVGFDYL 88
DGN V+H + +TVL + W I L G++ L
Sbjct: 93 DGNIQAVLHTHSHASTVLTMHWPANSITLEGYELL 127
>sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila
melanogaster GN=Aats-glupro PE=1 SV=2
Length = 1714
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 33 ARNAQYHMIGNAIVEQISRNQDGNFTGV---VHLEG--YKTTVLKLTWL 76
NA + GN ++ +++++ GN T V ++LE +K T LKLTWL
Sbjct: 569 GENATFINWGNILIRKVNKDASGNITSVDAALNLENKDFKKT-LKLTWL 616
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,291,632
Number of Sequences: 539616
Number of extensions: 1106081
Number of successful extensions: 2324
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2318
Number of HSP's gapped (non-prelim): 10
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)