Query 042647
Match_columns 95
No_of_seqs 102 out of 859
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:15:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042647.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042647hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1147 Glutamyl-tRNA syntheta 100.0 1.1E-31 2.4E-36 217.7 2.3 83 1-87 364-455 (712)
2 KOG1148 Glutaminyl-tRNA synthe 100.0 2.7E-31 5.9E-36 216.9 4.5 86 2-91 414-510 (764)
3 PTZ00437 glutaminyl-tRNA synth 99.9 2.9E-28 6.2E-33 198.9 5.0 82 2-87 216-306 (574)
4 PRK05347 glutaminyl-tRNA synth 99.9 3.9E-27 8.4E-32 191.9 5.0 82 2-87 199-290 (554)
5 PLN02859 glutamine-tRNA ligase 99.9 2.2E-26 4.7E-31 192.9 4.7 82 2-87 429-519 (788)
6 TIGR00440 glnS glutaminyl-tRNA 99.9 8.7E-26 1.9E-30 183.2 4.8 82 2-87 170-261 (522)
7 PLN03233 putative glutamate-tR 99.9 3.4E-25 7.3E-30 179.7 4.3 82 2-87 176-266 (523)
8 PRK14703 glutaminyl-tRNA synth 99.9 3.1E-25 6.7E-30 186.2 3.9 82 2-87 201-293 (771)
9 PLN02907 glutamate-tRNA ligase 99.9 8.5E-25 1.8E-29 182.6 5.1 82 2-87 378-468 (722)
10 PTZ00402 glutamyl-tRNA synthet 99.9 1.3E-23 2.8E-28 172.6 4.4 82 2-87 218-308 (601)
11 PRK04156 gltX glutamyl-tRNA sy 99.8 3.5E-21 7.5E-26 157.7 4.6 82 2-87 268-358 (567)
12 TIGR00463 gltX_arch glutamyl-t 99.7 7.3E-18 1.6E-22 138.1 5.0 79 2-87 258-349 (560)
13 cd00807 GlnRS_core catalytic c 99.7 5.4E-17 1.2E-21 121.3 4.5 80 4-87 96-184 (238)
14 cd09287 GluRS_non_core catalyt 99.6 1.1E-16 2.4E-21 119.7 4.4 80 4-87 98-186 (240)
15 KOG1147 Glutamyl-tRNA syntheta 99.5 1.4E-15 2.9E-20 124.5 -3.3 73 22-94 557-638 (712)
16 COG0008 GlnS Glutamyl- and glu 99.4 1.1E-13 2.4E-18 111.7 2.4 78 4-87 180-270 (472)
17 PF00749 tRNA-synt_1c: tRNA sy 99.1 3.1E-12 6.7E-17 98.4 -2.0 82 3-88 173-264 (314)
18 TIGR03838 queuosine_YadB gluta 98.9 4.8E-10 1E-14 85.3 1.9 73 4-80 155-242 (272)
19 cd00418 GlxRS_core catalytic c 98.5 5.6E-08 1.2E-12 72.5 2.4 64 13-80 93-170 (230)
20 cd00808 GluRS_core catalytic c 98.4 7.4E-08 1.6E-12 72.1 1.8 64 13-80 102-179 (239)
21 PRK12410 glutamylglutaminyl-tR 98.4 2.5E-07 5.4E-12 74.4 3.2 70 7-80 163-252 (433)
22 PRK05710 glutamyl-Q tRNA(Asp) 98.3 1.6E-07 3.5E-12 72.4 1.0 63 13-79 176-248 (299)
23 PLN02627 glutamyl-tRNA synthet 98.1 1.2E-06 2.5E-11 72.2 2.4 63 14-80 234-310 (535)
24 TIGR00464 gltX_bact glutamyl-t 98.1 2.1E-06 4.5E-11 69.5 3.0 65 14-82 182-260 (470)
25 PRK12558 glutamyl-tRNA synthet 98.0 2.2E-06 4.7E-11 69.3 2.0 63 14-80 181-257 (445)
26 PLN02907 glutamate-tRNA ligase 97.8 1.1E-06 2.3E-11 74.5 -3.9 62 33-94 581-651 (722)
27 PRK01406 gltX glutamyl-tRNA sy 97.7 2.6E-05 5.7E-10 63.3 2.4 63 14-80 192-268 (476)
28 KOG1149 Glutamyl-tRNA syntheta 97.3 0.00017 3.8E-09 58.7 3.0 63 14-80 222-298 (524)
29 PF03950 tRNA-synt_1c_C: tRNA 97.3 5.1E-06 1.1E-10 59.3 -5.7 61 33-93 61-131 (174)
30 PRK14895 gltX glutamyl-tRNA sy 97.1 0.00033 7.1E-09 57.7 2.5 62 15-80 182-257 (513)
31 PTZ00402 glutamyl-tRNA synthet 96.8 5.3E-05 1.2E-09 63.3 -4.2 63 32-94 419-491 (601)
32 TIGR00440 glnS glutaminyl-tRNA 96.0 0.00026 5.7E-09 58.4 -5.0 62 33-94 380-455 (522)
33 TIGR00463 gltX_arch glutamyl-t 95.8 0.00029 6.2E-09 58.6 -5.6 61 32-94 457-522 (560)
34 PRK05347 glutaminyl-tRNA synth 95.5 0.00053 1.1E-08 57.0 -4.9 62 33-94 410-485 (554)
35 PLN03233 putative glutamate-tR 94.8 0.0012 2.7E-08 54.5 -4.8 58 33-94 381-444 (523)
36 PRK14703 glutaminyl-tRNA synth 94.2 0.0022 4.8E-08 55.2 -4.6 62 33-94 414-488 (771)
37 PTZ00437 glutaminyl-tRNA synth 92.9 0.0073 1.6E-07 50.5 -3.6 60 35-94 428-494 (574)
38 cd00802 class_I_aaRS_core cata 88.3 0.15 3.2E-06 34.3 0.1 46 23-72 95-143 (143)
39 PLN02859 glutamine-tRNA ligase 85.2 0.1 2.2E-06 45.3 -2.5 56 39-94 648-716 (788)
40 cd02156 nt_trans nucleotidyl t 72.2 2.7 5.8E-05 26.8 1.6 47 23-72 58-105 (105)
41 cd00671 ArgRS_core catalytic c 62.4 5.4 0.00012 28.7 1.7 47 22-72 158-211 (212)
42 PF09723 Zn-ribbon_8: Zinc rib 33.7 12 0.00025 20.6 -0.3 7 15-21 2-8 (42)
43 smart00834 CxxC_CXXC_SSSS Puta 25.2 20 0.00044 18.7 -0.3 7 15-21 2-8 (41)
44 PF08057 Ery_res_leader2: Eryt 23.3 26 0.00057 15.1 -0.0 6 22-27 1-6 (14)
45 PF13082 DUF3931: Protein of u 21.8 21 0.00045 21.5 -0.7 11 22-32 54-64 (66)
46 PF04761 Phage_Treg: Lactococc 21.6 60 0.0013 19.2 1.2 25 25-49 27-53 (57)
47 PF00395 SLH: S-layer homology 20.5 60 0.0013 17.3 1.1 17 71-87 14-30 (45)
48 TIGR02605 CxxC_CxxC_SSSS putat 20.2 29 0.00063 19.3 -0.3 16 15-33 2-17 (52)
No 1
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-31 Score=217.70 Aligned_cols=83 Identities=29% Similarity=0.545 Sum_probs=77.6
Q ss_pred CCCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHH
Q 042647 1 PRSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVL 71 (95)
Q Consensus 1 ~~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKr 71 (95)
+.||||||+||+||||||||| |||+|||.||.||+.||+| +++.+....+..++ ||||+.++.+|||
T Consensus 364 ~~pHhRTG~KYkvYPTYDFaCPIVDslEGVThaLRttEYhDRn~Qyyw----~i~al~LRkp~iwefsRlN~~nTvLSKR 439 (712)
T KOG1147|consen 364 PEPHHRTGDKYKVYPTYDFACPIVDSLEGVTHALRTTEYHDRNAQYYW----FIDALGLRKPHIWEFSRLNFVNTVLSKR 439 (712)
T ss_pred CCCCCcCCCceeeecccccccccchhhhhhhhhhhhhhccccchHHHH----HHHHhcCCccceeehhhhhhHhhhhhhh
Confidence 468999999999999999998 9999999999999999999 77777776566678 9999999999999
Q ss_pred HHHHhhhCCeeccccc
Q 042647 72 KLTWLLEIIELVGFDY 87 (95)
Q Consensus 72 Kl~wLve~~~v~~wDd 87 (95)
||+|+|+.|.|.||||
T Consensus 440 KLtwfVd~GlV~GWDD 455 (712)
T KOG1147|consen 440 KLTWFVDEGLVDGWDD 455 (712)
T ss_pred heeeeeccCcccCCCC
Confidence 9999999999999998
No 2
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.7e-31 Score=216.90 Aligned_cols=86 Identities=23% Similarity=0.296 Sum_probs=80.2
Q ss_pred CCCCCCCCceEEeecCCcc-c-------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLT-F-------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~-~-------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.+|||||++|||||||||| | |||||||+||+.|+.+|+|.+|+ ++.+.|.|++ ||||+.|+++||||
T Consensus 414 ~pHpRtg~kwcIYPTYDythCl~DSlEnITHSlCT~EF~~rR~SY~WLcna----L~iY~P~qwEYgRLNv~~tv~SKRK 489 (764)
T KOG1148|consen 414 VPHPRTGDKWCIYPTYDYTHCLVDSLENITHSLCTKEFQTRRSSYYWLCNA----LEIYCPVQWEYGRLNVTYTVVSKRK 489 (764)
T ss_pred CCCCCCCCceEEecccchhhhehhhhhhhhhHHHHHHHHHhhhhHHHHHhh----hhcccchhhhhceeeeeeeeeehHH
Confidence 4899999999999999999 5 99999999999999999996666 6888899999 99999999999999
Q ss_pred HHHhhhCCeeccccc--cccc
Q 042647 73 LTWLLEIIELVGFDY--LITK 91 (95)
Q Consensus 73 l~wLve~~~v~~wDd--li~k 91 (95)
|..|+..|.|.|||| |.|.
T Consensus 490 i~~Lv~~~~V~~wDDPRLfTL 510 (764)
T KOG1148|consen 490 ILKLVTEGYVRGWDDPRLFTL 510 (764)
T ss_pred HHHHhhhcccccCCCccchhh
Confidence 999999999999999 6654
No 3
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=99.94 E-value=2.9e-28 Score=198.91 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=76.8
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.+|||+|++|+||||||||| |||||||+||++|++.|.| +++.+....|.+++ +|||++|+++||||
T Consensus 216 ~~h~~~gdk~~iyPtYdFa~~vdD~l~gITHvlct~Ef~~r~~~y~w----l~~~l~l~~p~~~ef~rln~~~~~LSKRk 291 (574)
T PTZ00437 216 VEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFW----LLEELNLWRPHVWEFSRLNVTGSLLSKRK 291 (574)
T ss_pred CCcCCCCCceEEEccCcccceeechhcCCCEEeeechhhcccHHHHH----HHHHhCCcccceEeeeeecCCCceeeccc
Confidence 47999999999999999995 9999999999999999998 66777777778889 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
+.+||++|+|.||||
T Consensus 292 l~~lV~~g~V~GWDD 306 (574)
T PTZ00437 292 INVLVRKGIVRGFDD 306 (574)
T ss_pred hHHhcccCccCCCCC
Confidence 999999999999999
No 4
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=99.93 E-value=3.9e-27 Score=191.91 Aligned_cols=82 Identities=20% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhc-cCCCccEE-EEEecCceeehHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQIS-RNQDGNFT-GVVHLEGYKTTVL 71 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~-~~~~~~i~-~rLnl~g~k~SKr 71 (95)
.+|||+|++|+||||||||| |||||||.||++++++|.| +.+.+. ...|.+++ ||||++|+++|||
T Consensus 199 ~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~----i~~alg~~~~P~~~~F~rln~~~~~LSKR 274 (554)
T PRK05347 199 AHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDW----VLDNLPIPPHPRQYEFSRLNLTYTVMSKR 274 (554)
T ss_pred CCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHH----HHHHcCCCCCCceEEEEEECCCCCccccc
Confidence 47999999999999999995 9999999999999999998 666664 23478889 9999999999999
Q ss_pred HHHHhhhCCeeccccc
Q 042647 72 KLTWLLEIIELVGFDY 87 (95)
Q Consensus 72 Kl~wLve~~~v~~wDd 87 (95)
|+++||++|.+.||||
T Consensus 275 kl~~lV~~g~v~GWDD 290 (554)
T PRK05347 275 KLKQLVEEKHVDGWDD 290 (554)
T ss_pred cchhccccCcccCccC
Confidence 9999999999999999
No 5
>PLN02859 glutamine-tRNA ligase
Probab=99.92 E-value=2.2e-26 Score=192.93 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=76.4
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.+|||||++|+||||||||| |||||||.||.++++.|+| +++.+....|.+++ +|||++|++|||||
T Consensus 429 ~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~w----l~~aLg~~~P~~~~f~rLn~~~t~LSKRk 504 (788)
T PLN02859 429 TPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYW----LLDSLGLYQPYVWEYSRLNVTNTVMSKRK 504 (788)
T ss_pred cCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHH----HHHHcCCCCCcEEeeeeECCCCCcccCcC
Confidence 47999999999999999995 9999999999999999998 66666666678889 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
+.+||++|.|.||||
T Consensus 505 l~~lV~~g~V~GWDD 519 (788)
T PLN02859 505 LNRLVTEKYVDGWDD 519 (788)
T ss_pred chhccccCcccCCCC
Confidence 999999999999999
No 6
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=99.92 E-value=8.7e-26 Score=183.16 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=74.9
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCceeehHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEGYKTTVL 71 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g~k~SKr 71 (95)
.+|||+|++|+||||||||| |||||||.||.+++.+|.| +.+++... .|.|++ ||||++|+++|||
T Consensus 170 ~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~----~~~~l~~~~~P~~~~F~rln~~~~kLSKR 245 (522)
T TIGR00440 170 APHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDW----VLDNIHIFPRPAQYEFSRLNLEGTVLSKR 245 (522)
T ss_pred CCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHH----HHHhcCccCCCceEEEEEECCCCCCcccc
Confidence 47999999999999999995 9999999999999999988 55555554 478889 9999999999999
Q ss_pred HHHHhhhCCeeccccc
Q 042647 72 KLTWLLEIIELVGFDY 87 (95)
Q Consensus 72 Kl~wLve~~~v~~wDd 87 (95)
|+++||++|+|.||||
T Consensus 246 k~~~~V~~g~v~GWdD 261 (522)
T TIGR00440 246 KLAQLVDDKFVRGWDD 261 (522)
T ss_pred cchhccccCcccCCCC
Confidence 9999999999999999
No 7
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=99.91 E-value=3.4e-25 Score=179.75 Aligned_cols=82 Identities=28% Similarity=0.501 Sum_probs=75.1
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
++|||||++|++|||||||| |||||||.||.++++.+.| +.+.+....|.+++ ++||++|+++||||
T Consensus 176 ~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~----l~~aLg~~~P~~~~f~rln~~~~kLSKR~ 251 (523)
T PLN03233 176 TPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFW----IQKALGLRRPRIHAFARMNFMNTVLSKRK 251 (523)
T ss_pred CcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHH----HHHHhCCCCCeeeeeEEECCCCCcccccC
Confidence 47999999999999999995 9999999999999999988 56666655567777 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
+++||+.|.+.||||
T Consensus 252 l~~lV~~g~v~GWDD 266 (523)
T PLN03233 252 LTWFVDNGHVTGWDD 266 (523)
T ss_pred chhhhccCcccCccC
Confidence 999999999999999
No 8
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=99.91 E-value=3.1e-25 Score=186.19 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=74.0
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC--CCccEE-EEEecCceeehH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN--QDGNFT-GVVHLEGYKTTV 70 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~--~~~~i~-~rLnl~g~k~SK 70 (95)
.+|||+|++|+||||||||| |||||||.||.++++.|.| +.+.+... .|.+++ ||||++|+++||
T Consensus 201 ~~H~~~Gd~~~i~PtYdfa~~vdD~l~gITHvlRg~E~~~~~~~~~~----l~~~l~~~~~~P~~~~f~rl~l~~~~lSK 276 (771)
T PRK14703 201 AHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDW----VLDHLGPWPPRPRQYEFARLALGYTVMSK 276 (771)
T ss_pred CCCCCcCCCCCcCCCccccceeeccccCCcEEEecHhhhhccHHHHH----HHHHhCCCCCCcceeEEEEeccCCCcccc
Confidence 47999999999999999995 9999999999999999998 55555322 367788 999999999999
Q ss_pred HHHHHhhhCCeeccccc
Q 042647 71 LKLTWLLEIIELVGFDY 87 (95)
Q Consensus 71 rKl~wLve~~~v~~wDd 87 (95)
|||++||++|.+.||||
T Consensus 277 Rkl~~lV~~g~v~GWDD 293 (771)
T PRK14703 277 RKLRELVEEGYVSGWDD 293 (771)
T ss_pred cCchhccccCcccCCCC
Confidence 99999999999999999
No 9
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=8.5e-25 Score=182.64 Aligned_cols=82 Identities=34% Similarity=0.542 Sum_probs=75.0
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
++|||||++|++|||||||| |||||||.||.+++++|.| +.+.+....|.+++ ||||++|+++||||
T Consensus 378 ~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~----l~~~lg~~~p~~~~f~~l~~~~~~lSKR~ 453 (722)
T PLN02907 378 TPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYR----ILEDMGLRKVHIWEFSRLNFVYTLLSKRK 453 (722)
T ss_pred CcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHH----HHHHcCCCCCeeEEEEEEcCCCccccccc
Confidence 47999999999999999996 9999999999999999998 56666655566788 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
|++|++.|.+.||||
T Consensus 454 l~~~v~~g~v~Gwdd 468 (722)
T PLN02907 454 LQWFVDNGKVEGWDD 468 (722)
T ss_pred hHhHhhcCcccCCCC
Confidence 999999999999998
No 10
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=99.88 E-value=1.3e-23 Score=172.59 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=75.3
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.+|||+|++|++|||||||| |||||||.||.++++.+.| +.+.+....|.+++ ++||++|+++||||
T Consensus 218 ~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~----L~~aLg~~~P~~~h~~rLn~~g~kLSKRk 293 (601)
T PTZ00402 218 TPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYW----FCDALGIRKPIVEDFSRLNMEYSVMSKRK 293 (601)
T ss_pred CcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHH----HHHHhCCCCceEEEEeeEcCCCCcccccC
Confidence 47999999999999999995 9999999999999999998 55556655677888 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
+++++++|+|.||||
T Consensus 294 l~~lv~~g~v~GWdD 308 (601)
T PTZ00402 294 LTQLVDTHVVDGWDD 308 (601)
T ss_pred ChhhhhcCcccccCC
Confidence 999999999999998
No 11
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.83 E-value=3.5e-21 Score=157.66 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=74.0
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.+|||+|++|++|||||||| |||++|+.||.++++.+.+ +.+.+....|.+++ ++|+++|++||||+
T Consensus 268 ~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~----l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~ 343 (567)
T PRK04156 268 TPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYDYFGWEYPETIHYGRLKIEGFVLSTSK 343 (567)
T ss_pred CCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHH----HHHHcCCCCceEEEcceecCCCceeeccc
Confidence 37999999999999999995 9999999999999998887 55555555567788 99999999999999
Q ss_pred HHHhhhCCeeccccc
Q 042647 73 LTWLLEIIELVGFDY 87 (95)
Q Consensus 73 l~wLve~~~v~~wDd 87 (95)
+++++++|.+.||||
T Consensus 344 ~~~~i~~g~~~gWDD 358 (567)
T PRK04156 344 IRKGIEEGEYSGWDD 358 (567)
T ss_pred chhccccCccccccC
Confidence 999999999999999
No 12
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.71 E-value=7.3e-18 Score=138.06 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhccccccc--chHHHHHHHHHHHhhhccCCCccEE-EEEecCc--eee
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNA--RNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG--YKT 68 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~--~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g--~k~ 68 (95)
++|||+|++|++|||||||| |||||||.||.+ ++.+|.| ..... ..|.+.+ +++.+++ ..+
T Consensus 258 ~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~----~~lg~--~~P~~~h~~~l~~~~~~kLs 331 (560)
T TIGR00463 258 TPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIY----MYFGW--ELPEFIHWGRLKINDVRTLS 331 (560)
T ss_pred CCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHH----HHcCC--CCCeEEEEcceecCCCcEec
Confidence 47999999999999999996 999999999999 4555665 22222 2346666 7777777 455
Q ss_pred hHHHHHHhhhCCeeccccc
Q 042647 69 TVLKLTWLLEIIELVGFDY 87 (95)
Q Consensus 69 SKrKl~wLve~~~v~~wDd 87 (95)
||+|+.+|++ |.+.||||
T Consensus 332 kk~k~~~l~~-g~~~gWdD 349 (560)
T TIGR00463 332 TSSKLKGIVR-GDYSGWDD 349 (560)
T ss_pred chhhhhhhhc-cCccCcCC
Confidence 5677888886 78999998
No 13
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.66 E-value=5.4e-17 Score=121.29 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHHH
Q 042647 4 HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKLT 74 (95)
Q Consensus 4 H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl~ 74 (95)
|+++|++|++||+|+||+ |||++|+.|+.++.+.+.+ +.+.+....|.+++ +++|.+|.|+|||+..
T Consensus 96 ~~~~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~----l~~aLg~~~P~~~~~~hln~~g~kLSKR~~~ 171 (238)
T cd00807 96 HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYW----LCDALRLYRPHQWEFSRLNLTYTVMSKRKLL 171 (238)
T ss_pred CCCCCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHH----HHHHcCCCCCceeEEEEECCCCCCccCcCch
Confidence 789999999999999995 9999999999999998887 55666666667778 9999999999999999
Q ss_pred HhhhCCeeccccc
Q 042647 75 WLLEIIELVGFDY 87 (95)
Q Consensus 75 wLve~~~v~~wDd 87 (95)
.++++|.+.|||+
T Consensus 172 ~~i~~g~~~~wdd 184 (238)
T cd00807 172 QLVDEGYVDGWDD 184 (238)
T ss_pred hccccCCcccccC
Confidence 9999999999997
No 14
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.65 E-value=1.1e-16 Score=119.69 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHHH
Q 042647 4 HHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKLT 74 (95)
Q Consensus 4 H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl~ 74 (95)
||++|++|.+||+|+||+ |||++|+.||.++.+.+.+ +.+.+....|...+ .+++.+|.|+|||++.
T Consensus 98 ~~~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~----l~~~Lg~~~P~~~H~pll~~~~~kLSKR~~~ 173 (240)
T cd09287 98 HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRY----IYEYFGWEYPETIHWGRLKIEGGKLSTSKIR 173 (240)
T ss_pred CcccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHHHH----HHHHcCCCCCcEEeeeeecCCCCeecccccc
Confidence 789999999999999995 9999999999999998887 55556655567777 9999999999999999
Q ss_pred HhhhCCeeccccc
Q 042647 75 WLLEIIELVGFDY 87 (95)
Q Consensus 75 wLve~~~v~~wDd 87 (95)
+++++|.+.||||
T Consensus 174 ~~i~~~~~~~w~d 186 (240)
T cd09287 174 KGIESGEYEGWDD 186 (240)
T ss_pred ccccccccccccC
Confidence 9999999999998
No 15
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.4e-15 Score=124.51 Aligned_cols=73 Identities=36% Similarity=0.575 Sum_probs=63.1
Q ss_pred hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE---EEEecCc-eeehHHHHHHhhhCC-----eecccccccccc
Q 042647 22 VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEII-----ELVGFDYLITKK 92 (95)
Q Consensus 22 vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g-~k~SKrKl~wLve~~-----~v~~wDdli~k~ 92 (95)
+..+....--+++++|||+|||++|++|+++++|.++ +.|||+| ||+||.|++||++.+ .+.+||+||||+
T Consensus 557 le~~Da~~l~~gEevTlmnWGN~~i~ki~kd~sg~vtsl~a~LnldgDfKkTk~KlTWLadt~~~vpv~lv~fd~lItK~ 636 (712)
T KOG1147|consen 557 LEQADAEALKEGEEVTLMNWGNAIIKKINKDASGKVTSLSAKLNLDGDFKKTKLKLTWLADTNDSVPVDLVDFDHLITKD 636 (712)
T ss_pred EeccchhhhcCCcEEEEEeccceeeEEeeccCCceEEEEEEEeccCCccccccceeEEeccCCCccceEEeechhhcchh
Confidence 3444444445667889999999999999999888877 9999999 999999999999996 889999999999
Q ss_pred cc
Q 042647 93 KV 94 (95)
Q Consensus 93 ~~ 94 (95)
+|
T Consensus 637 ~l 638 (712)
T KOG1147|consen 637 KL 638 (712)
T ss_pred hc
Confidence 87
No 16
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-13 Score=111.72 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=66.4
Q ss_pred CCC-CCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCc-eeehHHH
Q 042647 4 HHQ-IRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG-YKTTVLK 72 (95)
Q Consensus 4 H~r-tg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g-~k~SKrK 72 (95)
|++ ++.+|.+||||+||+ |||+||+.||.++++.+.+ +.+.+.-..|.+.+ ++++.+. .|+||||
T Consensus 180 ~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~----l~~~lg~~~P~~~H~~li~~~~g~kLSKr~ 255 (472)
T COG0008 180 HPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIW----LYEALGWPPPVYAHLPLLLNEDGKKLSKRK 255 (472)
T ss_pred CCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHH----HHHHcCCCCCcEEEeeeeecCCCCeecCcc
Confidence 889 999999999999995 9999999999999998887 66667776677888 8888744 5999999
Q ss_pred HHHhhhCC--eeccccc
Q 042647 73 LTWLLEII--ELVGFDY 87 (95)
Q Consensus 73 l~wLve~~--~v~~wDd 87 (95)
. .+..+ ...||++
T Consensus 256 ~--~~~~~~~~~~G~~~ 270 (472)
T COG0008 256 G--AVSIGEYRVEGWLP 270 (472)
T ss_pred C--ccccchhhhcCCCc
Confidence 9 55555 7788887
No 17
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=99.14 E-value=3.1e-12 Score=98.36 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred CCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH
Q 042647 3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK 72 (95)
Q Consensus 3 ~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK 72 (95)
.|+.++.++..+|||+||+ |||++|+.|+..+.....+ +.+.+....|...+ ..+|.+|.|+|||+
T Consensus 173 ~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~----L~~~Lg~~~P~~~H~pl~l~~~g~kLSKR~ 248 (314)
T PF00749_consen 173 LGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQIL----LYEALGWPPPPYAHLPLILNEDGKKLSKRK 248 (314)
T ss_dssp SBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHH----HHHHCTSSS-EEEEEEEEEETTSSBSSTTC
T ss_pred CCchhccccccCcccccceeecccccccCeEEEccccccccHHHHH----HHHHhCCCCcceEeeeeeecCCCcEechhh
Confidence 3788899999999999995 9999999999999998887 66666665444455 99999999999999
Q ss_pred HHHhhhCCeecccccc
Q 042647 73 LTWLLEIIELVGFDYL 88 (95)
Q Consensus 73 l~wLve~~~v~~wDdl 88 (95)
...+++.+.+.+||++
T Consensus 249 ~~~~i~~~~~r~~g~~ 264 (314)
T PF00749_consen 249 GAKSIELGDYREWGDP 264 (314)
T ss_dssp SHHBHHHHHHHHTT-T
T ss_pred ccccccccccccCCCC
Confidence 9999777777777764
No 18
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.91 E-value=4.8e-10 Score=85.27 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=59.1
Q ss_pred CCCCCCceEE-----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceee
Q 042647 4 HHQIRSNYKI-----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKT 68 (95)
Q Consensus 4 H~rtg~~~~i-----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~ 68 (95)
|+...+.+.| ||||+||+ |||++|+.|+..+.+.... +.+.+.-..|...+ . .+|.+|.|+
T Consensus 155 ~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~----l~~aLg~~~P~y~H~pll~~~~g~kL 230 (272)
T TIGR03838 155 LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIY----LQRLLGLPPPRYLHLPLVVNADGEKL 230 (272)
T ss_pred CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHH----HHHHhCCCCCeEEechhhhCCCCCee
Confidence 5667778999 99999995 9999999999999998777 55555544454455 3 469999999
Q ss_pred hHHHHHHhhhCC
Q 042647 69 TVLKLTWLLEII 80 (95)
Q Consensus 69 SKrKl~wLve~~ 80 (95)
|||+....++..
T Consensus 231 SKR~~~~~i~~~ 242 (272)
T TIGR03838 231 SKQNGAPALDLS 242 (272)
T ss_pred eccCCccchhcC
Confidence 999999998774
No 19
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.51 E-value=5.6e-08 Score=72.51 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=50.5
Q ss_pred EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCc-eeehHHH----HHHhhh
Q 042647 13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEG-YKTTVLK----LTWLLE 78 (95)
Q Consensus 13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g-~k~SKrK----l~wLve 78 (95)
.||||+||+ |||++|+.|+.++.+...+ +.+.+....|...+ ..+..++ .|+|||+ +..+.+
T Consensus 93 g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~----l~~~Lg~~~P~~~H~pll~~~~g~KLSKr~~~~~i~~~r~ 168 (230)
T cd00418 93 GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDW----LYEALGWEPPRFYHFPRLLLEDGTKLSKRKLNTTLRALRR 168 (230)
T ss_pred CCccccccccccccccCCCEEEECHhhhhchHHHHH----HHHHcCCCCCeEEEeeeeeCCCCCCccCcCCCcCHHHHHH
Confidence 689999995 9999999999999998777 66666665566677 7776555 9999997 445555
Q ss_pred CC
Q 042647 79 II 80 (95)
Q Consensus 79 ~~ 80 (95)
.|
T Consensus 169 ~G 170 (230)
T cd00418 169 RG 170 (230)
T ss_pred CC
Confidence 45
No 20
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.45 E-value=7.4e-08 Score=72.13 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=51.1
Q ss_pred EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHHH----HHhhh
Q 042647 13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLKL----TWLLE 78 (95)
Q Consensus 13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrKl----~wLve 78 (95)
.+|||+||+ |||++|+.|+..+.+...+ +.+.+....|...+ +.+ |.+|.|||||+. .+|.+
T Consensus 102 g~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~----l~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~~~l~~lr~ 177 (239)
T cd00808 102 GFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQIL----LYEALGWEPPKFAHLPLILNPDGKKLSKRKGDTSISDYRE 177 (239)
T ss_pred CCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHH----HHHHcCCCCCceEeeccccCCCCCcccCCCCCccHHHHHH
Confidence 589999994 9999999999999998777 56666655454455 664 899999999976 67777
Q ss_pred CC
Q 042647 79 II 80 (95)
Q Consensus 79 ~~ 80 (95)
.|
T Consensus 178 ~G 179 (239)
T cd00808 178 EG 179 (239)
T ss_pred CC
Confidence 66
No 21
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.37 E-value=2.5e-07 Score=74.44 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=53.5
Q ss_pred CCCceEEe-----ecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCC-ccEE--EEEecCceeehH
Q 042647 7 IRSNYKIY-----LTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQD-GNFT--GVVHLEGYKTTV 70 (95)
Q Consensus 7 tg~~~~iy-----P~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~-~~i~--~rLnl~g~k~SK 70 (95)
..+.+.|. |||+||+ |||++|+.|+..+.+.... +.+.+.-..| ...+ ..+|.+|.|+||
T Consensus 163 ~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~----Ly~aLg~~~pp~f~Hlpli~~~~g~KLSK 238 (433)
T PRK12410 163 EIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQIL----IREALGYNKEITYAHLPIILNEEGKKMSK 238 (433)
T ss_pred cCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHH----HHHHcCCCCCCeEEEeeeeeCCCCCeeec
Confidence 33457764 9999995 9999999999999987766 4444444322 3344 688999999999
Q ss_pred HH----HHHhhhCC
Q 042647 71 LK----LTWLLEII 80 (95)
Q Consensus 71 rK----l~wLve~~ 80 (95)
|+ +.++.+.|
T Consensus 239 R~~~~~v~~~r~~G 252 (433)
T PRK12410 239 RDNASSVKWLLEQG 252 (433)
T ss_pred ccChhhHHHHHHCC
Confidence 98 77777777
No 22
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.32 E-value=1.6e-07 Score=72.41 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=50.0
Q ss_pred EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHHHHHhhhC
Q 042647 13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLKLTWLLEI 79 (95)
Q Consensus 13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrKl~wLve~ 79 (95)
-+|+|+||+ |||++|+.|+.++.+...+ +.+.+.-..|...+ ..+|.+|.|+|||+....++.
T Consensus 176 g~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~----l~~aLg~~~P~y~H~pll~~~~g~kLSKr~~~~~i~~ 248 (299)
T PRK05710 176 GLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIY----LQQLLGLPTPRYLHLPLVLNADGQKLSKQNGAPALDA 248 (299)
T ss_pred CCccccchhHHhcccCCCCEEEeChhhhhcCHHHHH----HHHHcCCCCCeEEEeecccCCCCCcccccCCccchhh
Confidence 369999995 9999999999999998776 44445544455556 456999999999998887765
No 23
>PLN02627 glutamyl-tRNA synthetase
Probab=98.14 E-value=1.2e-06 Score=72.24 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=49.5
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EE-EecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GV-VHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~r-Lnl~g~k~SKrK----l~wLve~ 79 (95)
||||+||| |||++|+.|+..+.+..+. +.+.+.-..|...+ .. +|.+|.|+|||+ +..+.+.
T Consensus 234 ~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~----ly~aLg~~~P~f~Hlpli~~~~g~KLSKR~~~~~v~~~r~~ 309 (535)
T PLN02627 234 QPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQAL----IYKALGFPMPRFAHVSLILAPDRSKLSKRHGATSVGQFREM 309 (535)
T ss_pred CccccccceecccccCCcEEEechhhhcChHHHHH----HHHHcCCCCCeEEEccceeCCCCCccccccCCccHHHHHHC
Confidence 89999995 9999999999999998777 55555554455556 44 567779999995 6777777
Q ss_pred C
Q 042647 80 I 80 (95)
Q Consensus 80 ~ 80 (95)
|
T Consensus 310 G 310 (535)
T PLN02627 310 G 310 (535)
T ss_pred C
Confidence 7
No 24
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.09 E-value=2.1e-06 Score=69.49 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=51.6
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||+||+ |||++|+.|+..+.+.... +.+.+.-..|...+ --+|++|.|||||+ +..|.+.
T Consensus 182 ~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~----l~~aLg~~~p~~~H~p~l~~~~g~kLSKR~g~~~l~~l~~~ 257 (470)
T TIGR00464 182 SPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQIL----IYQALGWKIPVFAHLPMILDEDGKKLSKRDGATSIMQFKEQ 257 (470)
T ss_pred CcccccHHHHHHHhCCCCEEEECchhhcCHHHHHH----HHHHcCCCCCeEEEEeeeecCCCccccccCCCccHHHHHHC
Confidence 79999995 9999999999999988776 55555543344445 44688999999999 8999999
Q ss_pred Cee
Q 042647 80 IEL 82 (95)
Q Consensus 80 ~~v 82 (95)
|++
T Consensus 258 g~~ 260 (470)
T TIGR00464 258 GYL 260 (470)
T ss_pred CCC
Confidence 833
No 25
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.04 E-value=2.2e-06 Score=69.27 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=47.4
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||+||+ |||++|+.|+..+.+...+ +.+.+.-..|...+ --++.+|.|+|||+ +..+.+.
T Consensus 181 ~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~----l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~sv~~~r~~ 256 (445)
T PRK12558 181 SYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQ----IFEALGAKPPVFAHLSLLTGADGKGLSKRLGGLSIRSLRED 256 (445)
T ss_pred CccccccceeccccCCCCEEEechhhhhCCHHHHH----HHHHhCCCCCeEEEcccccCCCcccccccCCCcCHHHHHHC
Confidence 59999995 9999999999999998776 44445544454455 44556679999996 6667676
Q ss_pred C
Q 042647 80 I 80 (95)
Q Consensus 80 ~ 80 (95)
|
T Consensus 257 G 257 (445)
T PRK12558 257 G 257 (445)
T ss_pred C
Confidence 7
No 26
>PLN02907 glutamate-tRNA ligase
Probab=97.79 E-value=1.1e-06 Score=74.51 Aligned_cols=62 Identities=52% Similarity=0.830 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecCc-eeehHHHHHHhhhC--C---eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG-YKTTVLKLTWLLEI--I---ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g-~k~SKrKl~wLve~--~---~v~~wDdli~k~~~ 94 (95)
.++++||+|||.+++++.++++|.++ +.++++| ++++|.||+|+.+. . .+..||+|++++++
T Consensus 581 g~~v~L~~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~~~k~k~~i~Wv~~~~~~~~~~~~~~d~l~~~~~~ 651 (722)
T PLN02907 581 GEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEGSVKTTKLKLTWLPDTNELVPLSLVEFDYLITKKKL 651 (722)
T ss_pred CCEEEEcccCCEEEEEEEECCCCcEEEEEEEEccccCCCcCCCeEEEecCCCCceEEEEEccccccccCCC
Confidence 56788999999999988877677764 8899998 89999999999764 2 88899999999875
No 27
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.66 E-value=2.6e-05 Score=63.31 Aligned_cols=63 Identities=10% Similarity=0.102 Sum_probs=48.1
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||+|++ |||++|+.|+..+.+.... +.+.+.-..|...+ --+|++|.|+|||+ +..+.+.
T Consensus 192 ~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~----l~~alG~~~p~~~H~pli~~~~g~klSKR~g~~~l~~l~~~ 267 (476)
T PRK01406 192 TPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQIL----LYEALGWEVPVFAHLPLILGPDGKKLSKRHGATSVEQYRDM 267 (476)
T ss_pred CccccchHHHHHHHcCCCEEEECchhhcCHHHHHH----HHHHhCCCCCeEEEeeeeeCCCCCcccCcCCccCHHHHHHC
Confidence 79999994 9999999999999988776 55555543344344 44689999999996 5666666
Q ss_pred C
Q 042647 80 I 80 (95)
Q Consensus 80 ~ 80 (95)
|
T Consensus 268 G 268 (476)
T PRK01406 268 G 268 (476)
T ss_pred C
Confidence 6
No 28
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.00017 Score=58.74 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=45.0
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||.||+ |||++|+.|...+...-.-.-+| ..=..|...+ --+|.+|.|+|||+ +.-+.+.
T Consensus 222 fPTYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkA----fgW~pPkFaHlpLl~n~d~sKLSKRqgD~~vs~~~e~ 297 (524)
T KOG1149|consen 222 FPTYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKA----FGWQPPKFAHLPLLLNPDGSKLSKRQGDASVSHYREQ 297 (524)
T ss_pred CcceeeeeeecchhcchhheeecchhccccHHHHHHHHH----hCCCCCceeeeeeeecCCcchhhhhcCcchHHHHHHc
Confidence 79999996 99999999999887653321122 2222344455 77899999999995 5666666
Q ss_pred C
Q 042647 80 I 80 (95)
Q Consensus 80 ~ 80 (95)
|
T Consensus 298 G 298 (524)
T KOG1149|consen 298 G 298 (524)
T ss_pred C
Confidence 6
No 29
>PF03950 tRNA-synt_1c_C: tRNA synthetases class I (E and Q), anti-codon binding domain; InterPro: IPR020059 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2HZ7_A 3AII_A 1ZJW_A 1GTS_A 2RD2_A 1QRU_A 1O0B_A 1NYL_A 1EUQ_A 2RE8_A ....
Probab=97.26 E-value=5.1e-06 Score=59.27 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecCce---eehHHHHHHhhhCC----eeccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGY---KTTVLKLTWLLEII----ELVGFDYLITKKK 93 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~---k~SKrKl~wLve~~----~v~~wDdli~k~~ 93 (95)
...++||.|||..++++.++++|.+. ++++.+.. ++.|.+|+|+.+.. .+..||+|+++++
T Consensus 61 g~~v~L~~~~ni~i~~~~~~~~g~v~~l~~~~~~~~~~~~~k~k~~I~Wv~~~~~v~~e~r~yd~Lf~~~~ 131 (174)
T PF03950_consen 61 GKEVRLMYWGNIKITSIEKDEDGKVTELKARYDPEDKEGAKKPKAIIHWVSAKDSVPVEVRLYDHLFTVDN 131 (174)
T ss_dssp TCEEEETTTEEEEEEEEEE-TTSSEEEEEEEEECTTHHHHHHHT-EE-EEEGCC-EEEEEEEE--SBSSS-
T ss_pred CCEEEEeccceEEEEEeeecCCCCEEEEEEEEecccccCCcccCcEEEEccCCCCeeeEEEEehhhcCCCc
Confidence 45678999999999999877666654 78887664 45556999999754 7889999999753
No 30
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.09 E-value=0.00033 Score=57.74 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=46.6
Q ss_pred ecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHH----HHHhhhCC
Q 042647 15 LTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLK----LTWLLEII 80 (95)
Q Consensus 15 P~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrK----l~wLve~~ 80 (95)
|||+|++ |||++|+.|+..+.+.... +.+.+.-..|...+ +.+ |++|.|||||+ |..+-+.|
T Consensus 182 ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~----l~~aLG~~~p~~~H~plv~~~~g~KLSKR~g~~~i~~~r~~G 257 (513)
T PRK14895 182 ATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLA----IYQAFGYAVPSMTHIPLIHGADGAKLSKRHGALGIEAYKDMG 257 (513)
T ss_pred cchhhHHHHHHHhcCCCEEEECchHhhhHHHHHH----HHHHcCCCCCeEEEEEeEEcCCCCccccccCchhHHHHHHCC
Confidence 9999995 9999999999999887665 55555544454455 555 49999999996 45555556
No 31
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=96.84 E-value=5.3e-05 Score=63.32 Aligned_cols=63 Identities=43% Similarity=0.570 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHHhhhccC-CCccEE---EEEecCc-eeehHHHHHHhhhCC-----eecccccccccccc
Q 042647 32 NARNAQYHMIGNAIVEQISRN-QDGNFT---GVVHLEG-YKTTVLKLTWLLEII-----ELVGFDYLITKKKV 94 (95)
Q Consensus 32 ~~~~~ty~~Wgn~~v~~i~~~-~~~~i~---~rLnl~g-~k~SKrKl~wLve~~-----~v~~wDdli~k~~~ 94 (95)
..++++||+|||+++.++... ++|.|. ..++++| ++++|.+|+|+...+ .+..||+|++++++
T Consensus 419 ~g~~vrL~~~gn~~i~~~~~~~~~g~v~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~~~~r~yd~Lf~~~~p 491 (601)
T PTZ00402 419 EGDEVTLMDWGNAYIKNIRRSGEDALITDADIVLHLEGDVKKTKFKLTWVPESPKAEVMELNEYDHLLTKKKP 491 (601)
T ss_pred CCCEEEEeccCCEEEEEEEeeCCCCcEEEEEEEECCCCCCCcCCCeEEEecCCCCcceEEEEecccccCCCCC
Confidence 356788999999998877642 346555 6677777 888888999997652 68899999998764
No 32
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.95 E-value=0.00026 Score=58.37 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=47.4
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecC------c-eeehHHHHHHhhhCC----eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE------G-YKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~------g-~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
.+++.|++++|..++.+.++++|.+. +.++.+ + ++++|.+|+|+.... .+..||+|++++++
T Consensus 380 g~~vrL~~~~~i~~~~~~~d~~G~v~~~~~~~~~~~~~~~~~~~kk~k~~IhWv~~~~~~~~evr~yd~Lf~~~~p 455 (522)
T TIGR00440 380 GKEVRLRNAYVIKAERVEKDAAGKITTIFCTYDNKTLGKEPADGRKVKGVIHWVSASSKYPTETRLYDRLFKVPNP 455 (522)
T ss_pred CCEEEeCCEEEEEEEEEEecCCCCEEEEEEEEccccccCCccccccCCcEEEeeecCCCeeEEEEecccccCCCCC
Confidence 45567888888777777777677766 777764 3 678778999997543 88899999999875
No 33
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.76 E-value=0.00029 Score=58.60 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHHHhhhccCCCccEEEEEecCc-eeehHHHHHHhhhCC----eecccccccccccc
Q 042647 32 NARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 32 ~~~~~ty~~Wgn~~v~~i~~~~~~~i~~rLnl~g-~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
..++++||+|||.++++++.+ +.....+++++ +++++.+|+|+.+.. .+..+|.||+++++
T Consensus 457 ~g~~vrL~~~~ni~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~Wv~~~~~v~~~~~~~d~l~~~~~~ 522 (560)
T TIGR00463 457 EGEEVRLMDWGNVIITKKNDD--GSMYHSLNLEGARKKGKHIIHWLPDKDAVKVKVIMPDHLITEGRL 522 (560)
T ss_pred CCCEEEEeecccEEEEEEeCC--CcEEeccccccccccCCCEEEECcCCCceEEEEEcCccccccCcc
Confidence 356788999999998877553 33337788888 788889999998643 88899999987654
No 34
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.51 E-value=0.00053 Score=57.00 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=48.1
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecC-------ceeehHHHHHHhhhCC----eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE-------GYKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~-------g~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
.+++.||++++..++++.++++|.|. ++++++ .++++|.+|+|+.... .+..||+|++++++
T Consensus 410 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~kk~k~~IhWv~~~~~v~~~v~~yd~Lf~~~~p 485 (554)
T PRK05347 410 GKEVRLRNAYVIKCEEVVKDADGNITEIHCTYDPDTLSGNPADGRKVKGTIHWVSAAHAVPAEVRLYDRLFTVPNP 485 (554)
T ss_pred CCEEEecCEEEEEEEEEEEcCCCCEEEEEEEEccccccCCCccCcccCCEEEeeecCCCEeEEEEEeccccCCCCC
Confidence 45667898888777777776667765 788876 3677778999997644 88899999998875
No 35
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=94.76 E-value=0.0012 Score=54.50 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEEEEEecCc-eeehHHHHHHhhh--CC---eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFTGVVHLEG-YKTTVLKLTWLLE--II---ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~~rLnl~g-~k~SKrKl~wLve--~~---~v~~wDdli~k~~~ 94 (95)
.++++||.|+|..++++.++.. |++.+++ ++++|.+|+|+.+ .+ .+..||+|++++++
T Consensus 381 g~~vrL~~~~~i~~~~~~~d~~----~~~~~~~d~~~~k~~I~Wv~~~~~~~~~~~~~yd~L~~~~~~ 444 (523)
T PLN03233 381 GEDIVLLRWGVIEISKIDGDLE----GHFIPDGDFKAAKKKISWIADVSDNIPVVLSEFDNLIIKEKL 444 (523)
T ss_pred CCEEEeCceeeEEEEEEEecCc----eEEeeCCCCcccccEEEEcCCCCCccceEEEecccccCCCCC
Confidence 4567799999987776655421 6666666 7888889999974 22 88899999998764
No 36
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=94.20 E-value=0.0022 Score=55.16 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecCc------eeehHHHHHHhhhCC----eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEG------YKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g------~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
...+.||+|+|..++.+.++++|.|+ +++++++ .++.|.+|+|+.... .+..||+|++++++
T Consensus 414 g~~vrL~~~~~i~~~~~~kd~~G~v~~~~~~~~~~~~~~~~~~~k~k~~ihWv~~~~~v~~~vr~Yd~Lf~~~~p 488 (771)
T PRK14703 414 GREVRLRGAYIIRCDEVVRDADGAVTELRCTYDPESAKGEDTGRKAAGVIHWVSAKHALPAEVRLYDRLFKVPQP 488 (771)
T ss_pred CCEEEecceEEEEEEEEEEcCCCCEEEEEEEEeCCCcCCCccCCcCCcEEEEeecCCCeeEEEEecccccCCCCC
Confidence 45677999988778888777777766 7888877 245677899997543 88899999998764
No 37
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=92.87 E-value=0.0073 Score=50.52 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHhhhccCCCccEE---EEEecCceeehHHHHHHhhhCC----eecccccccccccc
Q 042647 35 NAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGYKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 35 ~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
.+.+++|+|..++++..+++|.++ +...++..++.|.+|+|+.+.. .+..||+|++++++
T Consensus 428 ~vrL~~~~~i~~~~~~~d~~g~v~~~~~~~d~~~~~k~k~~IhWvs~~~~v~~evr~Yd~Lf~~~~p 494 (574)
T PTZ00437 428 VVGLKYSGNVVCKGFEVDAAGQPSVIHVDIDFERKDKPKTNISWVSATACTPVEVRLYNALLKDDRA 494 (574)
T ss_pred EEEeccEEEEEEEEEEECCCCCEEEEEEEecccccccCCCeEEEeecCCceeEEEEeccccccCCCC
Confidence 566899998878877776667665 7777777777777899998654 88899999998653
No 38
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.27 E-value=0.15 Score=34.33 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=33.7
Q ss_pred hhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCc-eeehHHH
Q 042647 23 SFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEG-YKTTVLK 72 (95)
Q Consensus 23 THsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g-~k~SKrK 72 (95)
+|.++++|+..+.++... +++.+... .+..+. +++..++ .|||||+
T Consensus 95 ~i~~~G~Dq~~h~~~~~~----i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 95 DIHLGGSDQLGHIELGLE----LLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred EEEEechhHHHHHHHHHH----HHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 999999999887665554 66666433 244456 9998877 9999874
No 39
>PLN02859 glutamine-tRNA ligase
Probab=85.17 E-value=0.1 Score=45.33 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=40.7
Q ss_pred HHHHHHH-Hhhhc-cCCCccEE---EEEecCceeehHHHHHHhhhC-----C---eecccccccccccc
Q 042647 39 HMIGNAI-VEQIS-RNQDGNFT---GVVHLEGYKTTVLKLTWLLEI-----I---ELVGFDYLITKKKV 94 (95)
Q Consensus 39 ~~Wgn~~-v~~i~-~~~~~~i~---~rLnl~g~k~SKrKl~wLve~-----~---~v~~wDdli~k~~~ 94 (95)
+.|++++ ++++. ++.+|.|+ +.+++++..+.|.+|+|+.+. . .+..||+|++++++
T Consensus 648 L~~~~~i~~~~~~~~d~~g~v~el~~~~d~~~~~K~k~~ihWvs~~~~~~~~~~~e~r~yd~Lf~~~~p 716 (788)
T PLN02859 648 LRYAFPIKCTDVVLADDNETVVEIRAEYDPEKKTKPKGVLHWVAEPSPGVEPLKVEVRLFDKLFLSENP 716 (788)
T ss_pred EcceeEEEEEEEEEeCCCCCEEEEEEEEccCCCCccCceEEeeecCCCCCCceeEEEEeehhhcCCCCC
Confidence 4577666 45544 55567765 888888755667889999863 2 78899999998764
No 40
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=72.20 E-value=2.7 Score=26.79 Aligned_cols=47 Identities=9% Similarity=-0.012 Sum_probs=30.9
Q ss_pred hhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHH
Q 042647 23 SFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLK 72 (95)
Q Consensus 23 THsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrK 72 (95)
.|++|+.++..+.+. ..| +...+.+.. .+.++. .+.++++..+|+|+
T Consensus 58 ~~~~~G~~~~~~~~~-e~~-~~~n~~l~~-~~e~v~~~~~~~~~~~iSSs~ 105 (105)
T cd02156 58 DISVCGEDFQQNREL-YRW-VKDNITLPV-DPEQVELPRLNLETTVMSKRK 105 (105)
T ss_pred HHHHHHhhhhhchhH-HHH-HHHhcCCCC-CCeEEEccccccCceeeccCC
Confidence 389999999988874 445 444444432 235555 66667888888663
No 41
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=62.36 E-value=5.4 Score=28.70 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=32.8
Q ss_pred hhhh--hcccccccchHHHHHHHHHHHhhhccC-CCccE--E-EEEecC-ceeehHHH
Q 042647 22 VSFS--LRSSEYNARNAQYHMIGNAIVEQISRN-QDGNF--T-GVVHLE-GYKTTVLK 72 (95)
Q Consensus 22 vTHs--l~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i--~-~rLnl~-g~k~SKrK 72 (95)
++|+ +++.|+..+-.+... +++.+... ++... . +.++++ |-+||||+
T Consensus 158 ~~~~i~v~g~~~~~~~~~~~~----~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~ 211 (212)
T cd00671 158 ADKIIYVVGADHHGHFKRLFA----ALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRA 211 (212)
T ss_pred CCEEEEEECCCHHHHHHHHHH----HHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCC
Confidence 6888 899999888777664 55555543 22332 2 788888 68999885
No 42
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=33.70 E-value=12 Score=20.56 Aligned_cols=7 Identities=14% Similarity=0.149 Sum_probs=6.1
Q ss_pred ecCCccc
Q 042647 15 LTYGLTF 21 (95)
Q Consensus 15 P~Ydf~~ 21 (95)
|+|+|.|
T Consensus 2 P~Yey~C 8 (42)
T PF09723_consen 2 PIYEYRC 8 (42)
T ss_pred CCEEEEe
Confidence 8899987
No 43
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.24 E-value=20 Score=18.73 Aligned_cols=7 Identities=14% Similarity=0.149 Sum_probs=5.9
Q ss_pred ecCCccc
Q 042647 15 LTYGLTF 21 (95)
Q Consensus 15 P~Ydf~~ 21 (95)
|+|+|.|
T Consensus 2 p~Y~y~C 8 (41)
T smart00834 2 PIYEYRC 8 (41)
T ss_pred CCEEEEc
Confidence 7888887
No 44
>PF08057 Ery_res_leader2: Erythromycin resistance leader peptide; InterPro: IPR012559 This family consists of erythromycin resistance gene leader peptides. These leader peptides are involved in the transcriptional attenuation control of the synthesis of the macrolide-lincosamide -streptogramin B resistance protein. It acts as a transcriptional attenuator, in contrast to other inducible erm genes. The mRNA leader sequence can fold in either of two mutually exclusive conformations, one of which is postulated to form in the absence of induction, and to contain two rho factor-independent terminators [].; GO: 0046677 response to antibiotic
Probab=23.28 E-value=26 Score=15.11 Aligned_cols=6 Identities=33% Similarity=0.706 Sum_probs=3.8
Q ss_pred hhhhhc
Q 042647 22 VSFSLR 27 (95)
Q Consensus 22 vTHsl~ 27 (95)
+|||+|
T Consensus 1 mthsmr 6 (14)
T PF08057_consen 1 MTHSMR 6 (14)
T ss_pred Ccccee
Confidence 467765
No 45
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=21.85 E-value=21 Score=21.46 Aligned_cols=11 Identities=9% Similarity=0.449 Sum_probs=9.6
Q ss_pred hhhhhcccccc
Q 042647 22 VSFSLRSSEYN 32 (95)
Q Consensus 22 vTHsl~t~e~~ 32 (95)
.||.+.+-||.
T Consensus 54 lthmistdefa 64 (66)
T PF13082_consen 54 LTHMISTDEFA 64 (66)
T ss_pred EEEEecchhhc
Confidence 89999998885
No 46
>PF04761 Phage_Treg: Lactococcus bacteriophage putative transcription regulator; InterPro: IPR006848 This family represents a number of putative transcription repressor proteins found in several Lactococcus bacteriophages. Horizontal transfer may account for the presence of similar proteins in Lactococcus species [].
Probab=21.65 E-value=60 Score=19.17 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=17.9
Q ss_pred hhcccccccc--hHHHHHHHHHHHhhh
Q 042647 25 SLRSSEYNAR--NAQYHMIGNAIVEQI 49 (95)
Q Consensus 25 sl~t~e~~~~--~~ty~~Wgn~~v~~i 49 (95)
+.||++|..+ .++++-|.|+.--.+
T Consensus 27 ~~~s~~flq~slipql~ewsnaykaav 53 (57)
T PF04761_consen 27 SVDSKDFLQNSLIPQLYEWSNAYKAAV 53 (57)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5678888766 477899999974443
No 47
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=20.54 E-value=60 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.516 Sum_probs=11.3
Q ss_pred HHHHHhhhCCeeccccc
Q 042647 71 LKLTWLLEIIELVGFDY 87 (95)
Q Consensus 71 rKl~wLve~~~v~~wDd 87 (95)
.-|.+|++.|++.|+.+
T Consensus 14 ~~i~~~~~~gi~~G~~~ 30 (45)
T PF00395_consen 14 EAIQWLYQLGIISGYSD 30 (45)
T ss_dssp HHHHHHHHTTSS---TT
T ss_pred HHHHHHHHcCCcccCCC
Confidence 46888999999998864
No 48
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.15 E-value=29 Score=19.27 Aligned_cols=16 Identities=6% Similarity=0.135 Sum_probs=10.4
Q ss_pred ecCCccchhhhhccccccc
Q 042647 15 LTYGLTFVSFSLRSSEYNA 33 (95)
Q Consensus 15 P~Ydf~~vTHsl~t~e~~~ 33 (95)
|+|+|.|- -|+.+|+.
T Consensus 2 P~Yey~C~---~Cg~~fe~ 17 (52)
T TIGR02605 2 PIYEYRCT---ACGHRFEV 17 (52)
T ss_pred CCEEEEeC---CCCCEeEE
Confidence 88999883 24555553
Done!