Query 042647
Match_columns 95
No_of_seqs 102 out of 859
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 14:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qtq_A GLNRS, protein (glutami 99.8 4.6E-20 1.6E-24 149.6 3.1 82 2-87 196-287 (553)
2 3aii_A Glutamyl-tRNA synthetas 99.8 4.2E-20 1.4E-24 149.8 1.4 81 3-87 260-349 (553)
3 2hz7_A Glutaminyl-tRNA synthet 99.8 2.5E-19 8.5E-24 150.8 3.7 82 2-87 236-327 (851)
4 4gri_A Glutamate--tRNA ligase; 98.7 3.1E-09 1.1E-13 85.1 1.8 73 4-80 200-290 (512)
5 1j09_A Glutamyl-tRNA synthetas 98.6 1.1E-08 3.7E-13 81.4 1.3 62 14-81 184-261 (468)
6 3afh_A Glutamyl-tRNA synthetas 98.4 5.5E-08 1.9E-12 77.8 1.5 64 13-80 195-272 (488)
7 2cfo_A Glutamyl-tRNA synthetas 98.4 7.1E-08 2.4E-12 77.2 1.0 66 11-80 185-264 (492)
8 3al0_C Glutamyl-tRNA(Gln) amid 98.3 1.2E-07 4.1E-12 77.3 1.7 68 9-80 290-376 (592)
9 1nzj_A Hypothetical protein YA 98.3 6.7E-08 2.3E-12 72.9 -0.1 63 14-80 169-241 (298)
10 2ja2_A Glutamyl-tRNA synthetas 98.3 1.4E-07 4.8E-12 75.7 1.3 66 14-80 193-274 (498)
11 4g6z_A Glutamate-tRNA ligase; 98.3 2.3E-07 7.7E-12 74.4 2.0 63 14-80 205-281 (490)
12 2o5r_A Glutamyl-tRNA synthetas 98.1 5E-07 1.7E-11 72.0 1.2 64 14-81 203-280 (481)
13 1qtq_A GLNRS, protein (glutami 92.7 0.00096 3.3E-08 54.3 -7.8 62 33-94 406-481 (553)
14 2hz7_A Glutaminyl-tRNA synthet 90.2 0.0052 1.8E-07 52.2 -6.2 61 33-94 464-531 (851)
15 1sn9_A BBAT, tetrameric beta-B 63.0 1.3 4.5E-05 21.5 -0.3 7 15-21 5-11 (26)
16 2lix_A IMKTX104, potassium cha 34.7 12 0.00041 18.1 0.0 11 20-30 1-11 (27)
17 2atz_A H. pylori predicted cod 25.4 31 0.0011 24.1 1.6 15 6-20 141-155 (180)
No 1
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.78 E-value=4.6e-20 Score=149.59 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=73.5
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccC-CCccEE-EEEecCceeehHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRN-QDGNFT-GVVHLEGYKTTVL 71 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~-~~~~i~-~rLnl~g~k~SKr 71 (95)
.+||++|++|++||||+||| |||++|+.||.++++.+.| +.+.+... .|.+++ |+||++|.|||||
T Consensus 196 ~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~----l~~alg~~~~P~~~~f~hLn~~g~KLSKR 271 (553)
T 1qtq_A 196 AEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDW----VLDNITIPVHPRQYEFSRLNLEYTVMSKR 271 (553)
T ss_dssp CCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHH----HHHTSCCSCCCEEEEECCCCBTTSCCCHH
T ss_pred CCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHH----HHHHcCCCCCCCeEEEEeecCCCcccccc
Confidence 46999999999999999995 9999999999999998887 55555544 367788 9999999999999
Q ss_pred HHHHhhhCCeeccccc
Q 042647 72 KLTWLLEIIELVGFDY 87 (95)
Q Consensus 72 Kl~wLve~~~v~~wDd 87 (95)
++.++++.|.|.||||
T Consensus 272 ~~~~~v~~g~v~gWDD 287 (553)
T 1qtq_A 272 KLNLLVTDKHVEGWDD 287 (553)
T ss_dssp HHHHHHHTTSSSCTTC
T ss_pred ccccccccCcccCCCC
Confidence 9999999999999999
No 2
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.77 E-value=4.2e-20 Score=149.83 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=60.5
Q ss_pred CCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEEecCceeehHHHH
Q 042647 3 SHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVVHLEGYKTTVLKL 73 (95)
Q Consensus 3 ~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rLnl~g~k~SKrKl 73 (95)
+||++|++|++||+|+||| |||++||.||.++++.+.| +...+....|.+++ ++||++|.|||||++
T Consensus 260 ~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~----l~~alG~~~P~y~H~~~L~~~g~KLSKR~~ 335 (553)
T 3aii_A 260 EHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEY----LYRHLGWEPPEFIHYGRLKMDDVALSTSGA 335 (553)
T ss_dssp CBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHH----HHHHHTCCCCEEECCCCBC-------CHHH
T ss_pred CCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHH----HHHHcCCCCCeEEEeeEEecCCceechhhh
Confidence 6999999999999999997 9999999999999998887 33444444567778 999999999999999
Q ss_pred HHhhhCCeeccccc
Q 042647 74 TWLLEIIELVGFDY 87 (95)
Q Consensus 74 ~wLve~~~v~~wDd 87 (95)
.++++.|.|.||||
T Consensus 336 ~~~v~~g~v~gWdD 349 (553)
T 3aii_A 336 REGILRGEYSGWDD 349 (553)
T ss_dssp HHHHHHSSCCSTTC
T ss_pred hhhccccccccccC
Confidence 99999999999999
No 3
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.75 E-value=2.5e-19 Score=150.76 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=73.5
Q ss_pred CCCCCCCCceEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCC-CccEE-EEEecCceeehHH
Q 042647 2 RSHHQIRSNYKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQ-DGNFT-GVVHLEGYKTTVL 71 (95)
Q Consensus 2 ~~H~rtg~~~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~-~~~i~-~rLnl~g~k~SKr 71 (95)
.+||++|++|++||||+||| |||++|+.||.++++.+.| +.+.+.... |.+++ ++||++|.|||||
T Consensus 236 ~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~----l~~alG~~~~P~~~~fahLn~~g~KLSKR 311 (851)
T 2hz7_A 236 KPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDW----LMEKLNFDPRPHQYEFGRRGLEYTITSKR 311 (851)
T ss_dssp CCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHH----HHHHTTCSSCCEEEEECCEEETTCCCCHH
T ss_pred CCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHH----HHHHcCCCCCCCceEEEEecCCCcccccc
Confidence 36999999999999999997 9999999999999998887 444554443 67788 9999999999999
Q ss_pred HHHHhhhCCeeccccc
Q 042647 72 KLTWLLEIIELVGFDY 87 (95)
Q Consensus 72 Kl~wLve~~~v~~wDd 87 (95)
++.++++.|.|.||||
T Consensus 312 ~g~~~v~~g~v~gwDD 327 (851)
T 2hz7_A 312 KLRELVQAGRVSGWDD 327 (851)
T ss_dssp HHHHHHHTTSSSSTTC
T ss_pred ccccccccCcccCCCC
Confidence 9999999999999999
No 4
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.71 E-value=3.1e-09 Score=85.13 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=56.6
Q ss_pred CCCCCCceEE----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeeh
Q 042647 4 HHQIRSNYKI----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTT 69 (95)
Q Consensus 4 H~rtg~~~~i----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~S 69 (95)
|...|+.+.+ ||||+||| |||++|+.|+.++.+.+.+ +.+.+.-..|...+ --++.+|.|+|
T Consensus 200 ~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~----l~~alg~~~P~y~H~pli~~~~g~kLS 275 (512)
T 4gri_A 200 KDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVL----LYKAFKWKPPIYCHLPMVMGNDGQKLS 275 (512)
T ss_dssp GGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHH----HHHHHTCCCCEEEEECCCBCTTSSBCC
T ss_pred cccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHH----HHHHcCCCCCeEEecchhccccccccC
Confidence 4456665554 99999996 9999999999999998887 55555555444445 56777889999
Q ss_pred HHH----HHHhhhCC
Q 042647 70 VLK----LTWLLEII 80 (95)
Q Consensus 70 KrK----l~wLve~~ 80 (95)
||+ +..+.+.|
T Consensus 276 KR~~~~~v~~~~~~G 290 (512)
T 4gri_A 276 KRHGSTALRQFIEDG 290 (512)
T ss_dssp TTTSCCBHHHHHHHT
T ss_pred cccccccHHHHHHcC
Confidence 997 77888877
No 5
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.57 E-value=1.1e-08 Score=81.45 Aligned_cols=62 Identities=18% Similarity=0.125 Sum_probs=50.0
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEEEE----EecCceeehHHH----HHHhh
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFTGV----VHLEGYKTTVLK----LTWLL 77 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~~r----Lnl~g~k~SKrK----l~wLv 77 (95)
||||+||| |||++|+.|+.++.+.+.+ +.+.+....|.. ++ +|.+|.|||||+ |..+.
T Consensus 184 ~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~alg~~~p~~--~h~~li~~~~g~klSKR~g~~~l~~~~ 257 (468)
T 1j09_A 184 YPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVL----LYRAFGWEAPRF--YHMPLLRNPDKTKISKRKSHTSLDWYK 257 (468)
T ss_dssp CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHH----HHHHHTCCCCEE--EEECCCBCTTSCBCCTTTSCCBHHHHH
T ss_pred CeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHH----HHHHcCCCCCeE--EEeeeeeCCCCCccccccchhhHHHHH
Confidence 99999996 9999999999999998887 555555432322 44 488899999999 99999
Q ss_pred hCCe
Q 042647 78 EIIE 81 (95)
Q Consensus 78 e~~~ 81 (95)
+.|+
T Consensus 258 ~~G~ 261 (468)
T 1j09_A 258 AEGF 261 (468)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 9883
No 6
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.41 E-value=5.5e-08 Score=77.77 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=50.3
Q ss_pred EeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhh
Q 042647 13 IYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLE 78 (95)
Q Consensus 13 iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve 78 (95)
.+|||+||| |||++|+.|+.++.+.+.+ +.+.+.-..|...+ --+|.+|.|||||+ |.++.+
T Consensus 195 G~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~----l~~aLG~~~P~f~H~pli~~~~g~KLSKR~g~~~l~~~r~ 270 (488)
T 3afh_A 195 GFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLM----IYEAFGWEAPVFMHIPLILGSDRTPLSKRHGATSVEHFRR 270 (488)
T ss_dssp SCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHH----HHHHHTCCCCEEEEECCEECTTSSBCCTTTSCCBHHHHHH
T ss_pred CCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHH----HHHHcCCCCCeEEEEeeeeCCCCCcccCcCCcccHHHHHH
Confidence 399999996 9999999999999998876 55555544332233 23488999999999 899988
Q ss_pred CC
Q 042647 79 II 80 (95)
Q Consensus 79 ~~ 80 (95)
.|
T Consensus 271 ~G 272 (488)
T 3afh_A 271 EG 272 (488)
T ss_dssp HT
T ss_pred CC
Confidence 87
No 7
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.36 E-value=7.1e-08 Score=77.19 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=51.0
Q ss_pred eEEeecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EE-EecCceeehHHH----HHHh
Q 042647 11 YKIYLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GV-VHLEGYKTTVLK----LTWL 76 (95)
Q Consensus 11 ~~iyP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~r-Lnl~g~k~SKrK----l~wL 76 (95)
|+-||+|+||| |||++|+.|+..+.+...+ +.+.+....|...+ +. +|.+|.|||||+ +..+
T Consensus 185 ~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~----l~~alg~~~P~~~H~plil~~~g~KLSKr~g~~~l~~~ 260 (492)
T 2cfo_A 185 EIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQIL----LYEALGATPPNFAHTPLILNSTGQKLSKRDGVTSISDF 260 (492)
T ss_dssp SCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHH----HHHHTTCCCCEEEEECCEECSSSSBCCTTSSCCBHHHH
T ss_pred CCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHH----HHHHcCCCCceEEEeeeEECCCCCEecccCCcccHHHH
Confidence 34699999997 9999999999999998776 44444443332233 22 789999999999 8988
Q ss_pred hhCC
Q 042647 77 LEII 80 (95)
Q Consensus 77 ve~~ 80 (95)
.+.|
T Consensus 261 r~~G 264 (492)
T 2cfo_A 261 RAMG 264 (492)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 8887
No 8
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.33 E-value=1.2e-07 Score=77.34 Aligned_cols=68 Identities=12% Similarity=0.148 Sum_probs=53.4
Q ss_pred CceEE-----eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceeehHHH-
Q 042647 9 SNYKI-----YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKTTVLK- 72 (95)
Q Consensus 9 ~~~~i-----yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~SKrK- 72 (95)
+.+.| ||||+||| |||++|+.|+..+.+.+.+ +.+.+.-..|...+ . -+|.+|.|||||+
T Consensus 290 ~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~alg~~~P~~~hlpli~~~~g~KLSKR~g 365 (592)
T 3al0_C 290 EDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLM----IYEAFGWEAPVFMHIPLILGSDRTPLSKRHG 365 (592)
T ss_dssp CCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHH----HHTTTTCCCCBCCEECCCBCTTSSBCCTTTC
T ss_pred CCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHH----HHHHhCCCCCeEEEeeeeeCCCCCcccccCC
Confidence 45777 99999996 9999999999999998876 55555544332223 2 2488999999999
Q ss_pred ---HHHhhhCC
Q 042647 73 ---LTWLLEII 80 (95)
Q Consensus 73 ---l~wLve~~ 80 (95)
|.++.+.|
T Consensus 366 ~~~l~~~~~~G 376 (592)
T 3al0_C 366 ATSVEHFRREG 376 (592)
T ss_dssp SSBHHHHHHTT
T ss_pred cccHHHHHHCC
Confidence 89999988
No 9
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.32 E-value=6.7e-08 Score=72.93 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=37.0
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-EEE-ecCceeehHHHHHHhhhCC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-GVV-HLEGYKTTVLKLTWLLEII 80 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~rL-nl~g~k~SKrKl~wLve~~ 80 (95)
+|+|+||| |||++|+.|+..+.+.... +.+.+....|...+ +.+ |.+|.|||||+....++..
T Consensus 169 ~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~----l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~ 241 (298)
T 1nzj_A 169 LFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQIS----LYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG 241 (298)
T ss_dssp CBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHH----HHHHHTCCCCEEEEECBCCC-------------CCCSS
T ss_pred CEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHH----HHHHcCCCCCeEEEeeeeECCCCCcccccCCccChhcC
Confidence 89999997 9999999999988887665 44444444444455 554 8999999999998877764
No 10
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.29 E-value=1.4e-07 Score=75.66 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=47.3
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhh--ccCCCccEE--EEEecCceeehHHH----HHHhh
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQI--SRNQDGNFT--GVVHLEGYKTTVLK----LTWLL 77 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i--~~~~~~~i~--~rLnl~g~k~SKrK----l~wLv 77 (95)
||||+||+ |||++|+.|+.++.+.......++.. + .-..|.... --+|.+|.|||||+ |..+.
T Consensus 193 ~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~g~~~P~~~h~plil~~~g~KLSKR~g~~~l~~~r 271 (498)
T 2ja2_A 193 DPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGVAERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHR 271 (498)
T ss_dssp CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTSCCCCCEEEEECCEECSSSSBCCTTSGGGBHHHHH
T ss_pred CcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcCCCCCCeEEEeeeeECCCCCcccccCCcccHHHHH
Confidence 99999995 99999999999999976663333322 2 222222222 23788999999999 67777
Q ss_pred hCC
Q 042647 78 EII 80 (95)
Q Consensus 78 e~~ 80 (95)
+.|
T Consensus 272 ~~G 274 (498)
T 2ja2_A 272 DRG 274 (498)
T ss_dssp HHT
T ss_pred hCC
Confidence 766
No 11
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.27 E-value=2.3e-07 Score=74.44 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=48.9
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE--EEEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT--GVVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~--~rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||+||| |||++|+.|+.++.+...+ +.+.+.-..|...+ --+|.+|.|+|||+ |..+.+.
T Consensus 205 ~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~----l~~aLG~~~P~f~HlpLi~~~~g~KLSKR~g~~sl~~~r~~ 280 (490)
T 4g6z_A 205 TPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQIN----ILRALGGEVPVYAHLPTVLNEQGEKMSKRHGAMSVMGYRDA 280 (490)
T ss_dssp CBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHH----HHHHTTCCCCEEEEECCEECTTSSBCCTTTTCCBHHHHHHT
T ss_pred CccchhHHHHHHHhcCCCEEEeccccccChHHHHH----HHHHcCCCCCeEEEecceeCCCCCcccCCCCCcCHHHHHHC
Confidence 79999996 9999999999999998777 44555544333333 34577899999996 7788888
Q ss_pred C
Q 042647 80 I 80 (95)
Q Consensus 80 ~ 80 (95)
|
T Consensus 281 G 281 (490)
T 4g6z_A 281 G 281 (490)
T ss_dssp T
T ss_pred C
Confidence 7
No 12
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.13 E-value=5e-07 Score=72.01 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=50.4
Q ss_pred eecCCccc--------hhhhhcccccccchHHHHHHHHHHHhhhccCCCccEE-E-EEecCceeehHHH----HHHhhhC
Q 042647 14 YLTYGLTF--------VSFSLRSSEYNARNAQYHMIGNAIVEQISRNQDGNFT-G-VVHLEGYKTTVLK----LTWLLEI 79 (95)
Q Consensus 14 yP~Ydf~~--------vTHsl~t~e~~~~~~ty~~Wgn~~v~~i~~~~~~~i~-~-rLnl~g~k~SKrK----l~wLve~ 79 (95)
+|||+||| |||++|+.|+..+.+.+.+ +.+.+.-..|...+ . -++.+|.|||||+ |..+.+.
T Consensus 203 ~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~----l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~~~l~~~~~~ 278 (481)
T 2o5r_A 203 LPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLA----LYEAFEKAPPVFAHVSTILGPDGKKLSKRHGATSVEAFRDM 278 (481)
T ss_dssp CBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHH----HHHHTTCCCCEEEEECCEECTTSSBCCGGGSCCBHHHHHHH
T ss_pred CcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHH----HHHHcCCCCCeEEEEeeEECCCCCcccCcCCcccHHHHHHC
Confidence 99999996 9999999999999998777 55555544343333 3 3788999999999 8888887
Q ss_pred Ce
Q 042647 80 IE 81 (95)
Q Consensus 80 ~~ 81 (95)
|+
T Consensus 279 G~ 280 (481)
T 2o5r_A 279 GY 280 (481)
T ss_dssp TC
T ss_pred CC
Confidence 73
No 13
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=92.68 E-value=0.00096 Score=54.25 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=43.0
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecC-------ceeehHHHHHHhhhCC----eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLE-------GYKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~-------g~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
.++++||+|++..++++.+++.|.++ ++++++ ..++.|.+|+|+.+.. .+..||+|++++++
T Consensus 406 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~~~g~~~~~~k~k~~ihWv~~~~~~~~~~~~yd~L~~~~~p 481 (553)
T 1qtq_A 406 GKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADGRKVKGVIHWVSAAHALPVEIRLYDRLFSVPNP 481 (553)
T ss_dssp TSEEEETTSCEEEEEEEECCSSSCCCEEEECCCSSCC-----------CEECCEESTTCEEEEEEEECCSBSSSCG
T ss_pred CCEEEeccEEEEEEEEEEEcCCCCEEEEEEEEecccccCCCccccccCCEEEEeecCCCEeEEEEecccccCCCCC
Confidence 45677999887767788777666543 777775 2577778999998654 88899999999864
No 14
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=90.16 E-value=0.0052 Score=52.23 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHHhhhccCCCccEE---EEEecCceeehHHHHHHhhhCC----eecccccccccccc
Q 042647 33 ARNAQYHMIGNAIVEQISRNQDGNFT---GVVHLEGYKTTVLKLTWLLEII----ELVGFDYLITKKKV 94 (95)
Q Consensus 33 ~~~~ty~~Wgn~~v~~i~~~~~~~i~---~rLnl~g~k~SKrKl~wLve~~----~v~~wDdli~k~~~ 94 (95)
..+++||+|+|..++.+.++++|.++ ++++.++ ++.|.+|+|+.... .+.-||+|++++++
T Consensus 464 g~~vrL~~~~~i~~~~~~kd~~g~v~~~~~~~~~~~-~k~k~~ihWv~~~~~~~~e~r~yd~Lf~~~~p 531 (851)
T 2hz7_A 464 GGTVRLRGAGIIRADDFGTDEAGQVTHIRATLLGED-AKAAGVIHWVSAERALPAEFRLYDRLFRVPHP 531 (851)
T ss_dssp TCEEEETTTEEEEEEEEEECTTSCEEEEEEEECCTT-CCCSCEECCEETTTCEEEEEEEECCSBSSSCT
T ss_pred CCEEEecCeEEEEEEEEEecCCCCEEEEEEEEcccC-CccCceEEEeecCCCeeEEEEecccccCCCCc
Confidence 45677999998778888777667665 6665444 56668999997654 78889999999864
No 15
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=62.99 E-value=1.3 Score=21.48 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=5.9
Q ss_pred ecCCccc
Q 042647 15 LTYGLTF 21 (95)
Q Consensus 15 P~Ydf~~ 21 (95)
|+|||+-
T Consensus 5 psydfad 11 (26)
T 1sn9_A 5 PSYDFAD 11 (26)
T ss_dssp TTBCHHH
T ss_pred CccchHH
Confidence 8999983
No 16
>2lix_A IMKTX104, potassium channel toxins; disulfide bond stabilized structure; NMR {Lychas mucronatus}
Probab=34.70 E-value=12 Score=18.13 Aligned_cols=11 Identities=9% Similarity=-0.143 Sum_probs=7.4
Q ss_pred cchhhhhcccc
Q 042647 20 TFVSFSLRSSE 30 (95)
Q Consensus 20 ~~vTHsl~t~e 30 (95)
|||||--|+.-
T Consensus 1 acvthedctll 11 (27)
T 2lix_A 1 ACVTHEDCTLL 11 (27)
Confidence 46888777653
No 17
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=25.41 E-value=31 Score=24.11 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=12.5
Q ss_pred CCCCceEEeecCCcc
Q 042647 6 QIRSNYKIYLTYGLT 20 (95)
Q Consensus 6 rtg~~~~iyP~Ydf~ 20 (95)
+.+.+|+++|+.|.-
T Consensus 141 klpkeWr~fPs~dlP 155 (180)
T 2atz_A 141 GLPKEWKVFPSNEWP 155 (180)
T ss_dssp TSCCCEEEESCTTSC
T ss_pred hCccceeeCCCccCC
Confidence 457899999999875
Done!