Query 042649
Match_columns 199
No_of_seqs 155 out of 1233
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:16:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 4.5E-14 9.7E-19 93.3 5.3 54 27-80 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.5 3.7E-14 8E-19 92.6 4.5 49 29-77 2-55 (55)
3 smart00353 HLH helix loop heli 99.4 2.2E-13 4.7E-18 88.1 5.6 49 33-81 1-52 (53)
4 KOG1318 Helix loop helix trans 99.0 1E-09 2.2E-14 97.6 6.4 61 22-82 227-291 (411)
5 cd04897 ACT_ACR_3 ACT domain-c 99.0 1.2E-08 2.5E-13 70.9 10.3 68 131-198 3-74 (75)
6 KOG1319 bHLHZip transcription 98.9 2.4E-09 5.3E-14 85.3 4.9 68 25-92 59-133 (229)
7 cd04895 ACT_ACR_1 ACT domain-c 98.8 4.3E-08 9.3E-13 67.5 9.8 66 131-196 3-68 (72)
8 KOG3960 Myogenic helix-loop-he 98.7 3.8E-08 8.1E-13 81.8 6.5 84 6-90 95-182 (284)
9 cd04896 ACT_ACR-like_3 ACT dom 98.6 4.8E-07 1E-11 62.8 9.3 65 131-196 2-72 (75)
10 cd04927 ACT_ACR-like_2 Second 98.6 6.4E-07 1.4E-11 62.1 9.9 67 130-196 1-71 (76)
11 cd04900 ACT_UUR-like_1 ACT dom 98.6 1.1E-06 2.3E-11 60.3 10.6 65 131-195 3-68 (73)
12 KOG2483 Upstream transcription 98.4 9.6E-07 2.1E-11 73.6 8.4 67 24-90 55-124 (232)
13 cd04925 ACT_ACR_2 ACT domain-c 98.4 4.4E-06 9.5E-11 57.5 10.1 67 131-197 2-73 (74)
14 KOG4304 Transcriptional repres 98.4 1.7E-07 3.6E-12 79.1 3.2 59 24-82 28-94 (250)
15 KOG3561 Aryl-hydrocarbon recep 98.4 5.8E-07 1.3E-11 86.0 5.8 58 22-79 14-75 (803)
16 cd04899 ACT_ACR-UUR-like_2 C-t 98.2 2.7E-05 6E-10 52.1 9.8 64 131-194 2-68 (70)
17 cd04928 ACT_TyrKc Uncharacteri 98.2 4.1E-05 8.9E-10 52.1 10.0 64 131-196 3-67 (68)
18 cd04926 ACT_ACR_4 C-terminal 98.1 4.9E-05 1.1E-09 51.9 9.7 65 131-196 3-67 (72)
19 KOG0561 bHLH transcription fac 98.0 2.4E-06 5.2E-11 72.9 2.3 62 24-85 56-119 (373)
20 PLN03217 transcription factor 98.0 2.1E-05 4.5E-10 55.2 6.0 53 41-93 20-78 (93)
21 PRK05007 PII uridylyl-transfer 97.9 8.4E-05 1.8E-09 73.0 10.9 80 118-197 796-879 (884)
22 PF13740 ACT_6: ACT domain; PD 97.9 0.00016 3.5E-09 49.9 9.2 66 129-197 2-67 (76)
23 KOG4029 Transcription factor H 97.9 2.4E-05 5.2E-10 65.2 5.5 65 22-86 103-171 (228)
24 cd04873 ACT_UUR-ACR-like ACT d 97.8 0.00042 9.1E-09 45.9 9.8 65 131-196 2-66 (70)
25 PF01842 ACT: ACT domain; Int 97.8 0.00049 1.1E-08 45.0 9.7 61 131-195 2-64 (66)
26 PRK01759 glnD PII uridylyl-tra 97.8 0.00017 3.8E-09 70.6 10.5 79 118-196 771-853 (854)
27 PRK00275 glnD PII uridylyl-tra 97.8 0.00028 6.1E-09 69.4 11.6 80 118-197 802-886 (895)
28 cd04893 ACT_GcvR_1 ACT domains 97.7 0.00055 1.2E-08 47.3 9.7 64 130-196 2-65 (77)
29 PRK04374 PII uridylyl-transfer 97.7 0.00042 9.2E-09 68.0 12.3 81 118-198 784-868 (869)
30 PRK03381 PII uridylyl-transfer 97.6 0.0007 1.5E-08 65.7 11.9 71 127-197 597-667 (774)
31 cd04872 ACT_1ZPV ACT domain pr 97.5 0.00061 1.3E-08 48.1 7.9 66 130-196 2-67 (88)
32 KOG2588 Predicted DNA-binding 97.5 4.1E-05 9E-10 74.0 2.3 66 26-91 274-340 (953)
33 PRK00194 hypothetical protein; 97.5 0.00079 1.7E-08 47.6 8.3 67 129-196 3-69 (90)
34 PRK05092 PII uridylyl-transfer 97.5 0.00097 2.1E-08 66.0 11.4 80 118-197 831-915 (931)
35 cd04869 ACT_GcvR_2 ACT domains 97.5 0.0023 5E-08 44.0 9.7 62 132-195 2-69 (81)
36 PRK03381 PII uridylyl-transfer 97.4 0.0016 3.5E-08 63.2 11.5 66 128-195 706-771 (774)
37 PF13291 ACT_4: ACT domain; PD 97.4 0.0041 8.9E-08 42.8 10.6 50 129-178 6-57 (80)
38 TIGR01693 UTase_glnD [Protein- 97.4 0.0014 3E-08 64.2 10.8 79 118-196 767-849 (850)
39 PRK03059 PII uridylyl-transfer 97.4 0.0017 3.6E-08 63.8 10.9 78 119-196 775-854 (856)
40 cd04894 ACT_ACR-like_1 ACT dom 97.4 0.0014 3.1E-08 43.6 7.1 65 131-195 2-67 (69)
41 TIGR01693 UTase_glnD [Protein- 97.3 0.0017 3.7E-08 63.6 10.7 71 127-197 666-741 (850)
42 cd04870 ACT_PSP_1 CT domains f 97.3 0.0029 6.3E-08 43.3 9.0 64 132-197 2-65 (75)
43 PRK05007 PII uridylyl-transfer 97.3 0.0024 5.2E-08 62.9 11.3 80 118-197 689-773 (884)
44 cd04875 ACT_F4HF-DF N-terminal 97.3 0.0032 6.9E-08 42.8 8.6 64 132-196 2-67 (74)
45 COG2844 GlnD UTP:GlnB (protein 97.3 0.0015 3.2E-08 63.0 9.0 76 117-193 778-854 (867)
46 PRK01759 glnD PII uridylyl-tra 97.2 0.0029 6.3E-08 62.1 11.1 80 118-197 665-749 (854)
47 PRK00275 glnD PII uridylyl-tra 96.9 0.0065 1.4E-07 60.0 10.2 70 128-197 703-778 (895)
48 cd04887 ACT_MalLac-Enz ACT_Mal 96.8 0.015 3.2E-07 39.1 8.3 47 132-178 2-49 (74)
49 PRK03059 PII uridylyl-transfer 96.7 0.014 3E-07 57.5 10.5 69 128-197 677-750 (856)
50 cd04886 ACT_ThrD-II-like C-ter 96.6 0.018 4E-07 37.7 7.9 61 132-194 1-66 (73)
51 PRK05092 PII uridylyl-transfer 96.6 0.018 3.9E-07 57.2 10.6 79 118-196 720-804 (931)
52 PRK04374 PII uridylyl-transfer 96.5 0.02 4.4E-07 56.4 10.4 70 128-197 689-760 (869)
53 cd04877 ACT_TyrR N-terminal AC 96.4 0.016 3.5E-07 39.3 6.6 44 131-177 2-45 (74)
54 cd04888 ACT_PheB-BS C-terminal 96.4 0.023 5E-07 38.2 7.2 63 131-194 2-65 (76)
55 PRK04435 hypothetical protein; 96.3 0.035 7.6E-07 43.2 8.4 68 126-194 66-134 (147)
56 cd04874 ACT_Af1403 N-terminal 96.2 0.05 1.1E-06 35.6 8.1 59 131-193 2-61 (72)
57 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.2 0.058 1.3E-06 35.8 8.5 47 130-176 1-49 (79)
58 PRK06027 purU formyltetrahydro 96.0 0.072 1.6E-06 45.9 9.9 66 129-195 6-73 (286)
59 cd04880 ACT_AAAH-PDT-like ACT 96.0 0.073 1.6E-06 36.0 8.1 61 134-194 4-66 (75)
60 TIGR00655 PurU formyltetrahydr 95.8 0.087 1.9E-06 45.3 9.7 63 131-194 2-66 (280)
61 PRK13010 purU formyltetrahydro 95.8 0.061 1.3E-06 46.5 8.8 68 129-196 9-78 (289)
62 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.074 1.6E-06 33.5 7.1 60 132-193 1-61 (71)
63 PRK13011 formyltetrahydrofolat 95.7 0.091 2E-06 45.3 9.5 66 129-196 7-74 (286)
64 cd02116 ACT ACT domains are co 95.7 0.092 2E-06 31.3 7.0 45 132-176 1-47 (60)
65 cd04879 ACT_3PGDH-like ACT_3PG 95.7 0.089 1.9E-06 34.0 7.3 58 132-194 2-61 (71)
66 PRK08577 hypothetical protein; 95.5 0.18 3.9E-06 38.4 9.5 66 128-194 55-122 (136)
67 KOG4447 Transcription factor T 95.5 0.0078 1.7E-07 46.9 1.6 53 27-79 77-131 (173)
68 cd04903 ACT_LSD C-terminal ACT 95.3 0.14 3E-06 33.2 7.2 58 132-194 2-61 (71)
69 cd04882 ACT_Bt0572_2 C-termina 95.2 0.17 3.6E-06 32.7 7.3 56 132-194 2-59 (65)
70 cd04905 ACT_CM-PDT C-terminal 95.1 0.34 7.4E-06 33.2 9.0 60 132-193 4-64 (80)
71 cd04884 ACT_CBS C-terminal ACT 95.0 0.2 4.4E-06 33.5 7.6 62 132-195 2-66 (72)
72 cd04909 ACT_PDH-BS C-terminal 94.7 0.38 8.2E-06 31.7 8.2 60 131-194 3-64 (69)
73 cd04908 ACT_Bt0572_1 N-termina 94.6 0.52 1.1E-05 31.0 8.5 56 132-194 4-59 (66)
74 cd04878 ACT_AHAS N-terminal AC 94.6 0.74 1.6E-05 29.7 9.7 60 131-193 2-63 (72)
75 cd04889 ACT_PDH-BS-like C-term 94.5 0.44 9.6E-06 30.1 7.8 45 132-176 1-46 (56)
76 PRK11589 gcvR glycine cleavage 94.4 0.16 3.4E-06 41.3 6.7 65 128-195 7-71 (190)
77 KOG3910 Helix loop helix trans 94.4 0.029 6.3E-07 51.4 2.6 58 25-82 523-584 (632)
78 cd04883 ACT_AcuB C-terminal AC 94.1 0.72 1.6E-05 30.4 8.4 59 131-194 3-63 (72)
79 KOG3898 Transcription factor N 93.9 0.034 7.4E-07 47.2 1.9 55 25-79 69-126 (254)
80 COG3830 ACT domain-containing 93.8 0.16 3.5E-06 36.3 4.9 68 129-197 3-70 (90)
81 KOG3558 Hypoxia-inducible fact 93.8 0.05 1.1E-06 51.7 3.0 50 26-75 44-97 (768)
82 cd04931 ACT_PAH ACT domain of 93.7 0.81 1.8E-05 32.6 8.5 49 130-178 15-64 (90)
83 PRK07334 threonine dehydratase 93.5 0.84 1.8E-05 41.1 10.4 49 129-177 326-379 (403)
84 cd04904 ACT_AAAH ACT domain of 93.2 0.82 1.8E-05 31.0 7.6 45 134-178 5-50 (74)
85 cd04901 ACT_3PGDH C-terminal A 93.0 0.13 2.8E-06 33.7 3.3 58 132-194 2-59 (69)
86 KOG4395 Transcription factor A 92.3 0.24 5.3E-06 41.8 4.6 54 27-80 173-229 (285)
87 COG0788 PurU Formyltetrahydrof 92.2 1.2 2.5E-05 38.2 8.6 66 129-195 7-74 (287)
88 cd04902 ACT_3PGDH-xct C-termin 91.6 0.89 1.9E-05 29.9 6.1 57 133-194 3-61 (73)
89 PRK11589 gcvR glycine cleavage 91.6 1.8 3.9E-05 35.1 8.9 64 130-195 96-165 (190)
90 COG2844 GlnD UTP:GlnB (protein 91.5 1.2 2.6E-05 43.6 8.9 69 128-196 683-755 (867)
91 TIGR00119 acolac_sm acetolacta 91.2 1.1 2.4E-05 35.3 7.2 63 131-196 3-67 (157)
92 PRK00227 glnD PII uridylyl-tra 91.2 1.6 3.5E-05 42.2 9.5 67 130-197 547-614 (693)
93 PF05088 Bac_GDH: Bacterial NA 91.0 1.5 3.2E-05 45.9 9.6 71 128-198 488-563 (1528)
94 CHL00100 ilvH acetohydroxyacid 91.0 1.5 3.2E-05 35.2 7.8 64 131-197 4-69 (174)
95 PRK11152 ilvM acetolactate syn 90.9 2.7 6E-05 29.0 8.0 61 131-195 5-67 (76)
96 PRK13562 acetolactate synthase 90.8 1.1 2.5E-05 31.6 6.1 63 131-195 4-68 (84)
97 KOG3559 Transcriptional regula 90.7 0.25 5.3E-06 44.6 3.3 43 33-75 6-52 (598)
98 cd04929 ACT_TPH ACT domain of 90.5 2.4 5.3E-05 28.9 7.5 55 136-194 7-62 (74)
99 PRK11895 ilvH acetolactate syn 90.5 1.8 3.8E-05 34.3 7.7 62 131-195 4-67 (161)
100 PF13710 ACT_5: ACT domain; PD 90.1 1.8 4E-05 28.5 6.5 55 138-195 1-57 (63)
101 KOG3560 Aryl-hydrocarbon recep 89.9 0.29 6.2E-06 45.6 3.1 39 36-74 33-75 (712)
102 PRK11092 bifunctional (p)ppGpp 89.8 3.1 6.8E-05 40.3 10.2 60 119-178 612-676 (702)
103 COG4492 PheB ACT domain-contai 89.6 2.7 5.9E-05 32.3 7.7 67 127-194 70-137 (150)
104 PRK10872 relA (p)ppGpp synthet 89.0 3.7 8.1E-05 40.1 10.1 60 119-178 652-717 (743)
105 PRK06737 acetolactate synthase 89.0 2.5 5.3E-05 29.3 6.6 62 130-194 3-66 (76)
106 cd04885 ACT_ThrD-I Tandem C-te 88.8 2.8 6.1E-05 27.7 6.7 59 133-194 2-61 (68)
107 TIGR00691 spoT_relA (p)ppGpp s 88.3 4.4 9.5E-05 39.2 10.0 60 119-178 596-660 (683)
108 cd04930 ACT_TH ACT domain of t 86.1 4.6 0.0001 30.1 7.1 48 131-178 43-91 (115)
109 cd04922 ACT_AKi-HSDH-ThrA_2 AC 85.9 6.9 0.00015 24.9 7.3 52 138-196 13-64 (66)
110 PRK11899 prephenate dehydratas 82.9 12 0.00025 32.3 9.1 63 130-194 195-258 (279)
111 PRK08198 threonine dehydratase 82.7 9.4 0.0002 34.2 8.9 66 127-194 325-395 (404)
112 TIGR01127 ilvA_1Cterm threonin 82.0 9 0.00019 34.0 8.4 66 127-194 303-373 (380)
113 COG4747 ACT domain-containing 81.6 12 0.00025 28.4 7.4 43 131-173 5-47 (142)
114 cd04892 ACT_AK-like_2 ACT doma 80.5 11 0.00024 23.2 7.0 43 132-176 3-48 (65)
115 cd04906 ACT_ThrD-I_1 First of 80.3 14 0.00031 25.5 7.3 61 131-194 3-64 (85)
116 PRK06382 threonine dehydratase 78.8 13 0.00029 33.3 8.5 65 128-194 329-398 (406)
117 PRK08178 acetolactate synthase 78.3 16 0.00035 26.4 7.1 64 129-194 8-71 (96)
118 cd04918 ACT_AK1-AT_2 ACT domai 77.6 12 0.00027 24.3 6.1 52 138-196 12-63 (65)
119 PRK15385 magnesium transport p 76.7 29 0.00062 29.0 9.2 66 128-193 141-210 (225)
120 KOG3582 Mlx interactors and re 76.6 0.59 1.3E-05 44.7 -0.9 67 26-92 649-720 (856)
121 cd04919 ACT_AK-Hom3_2 ACT doma 76.5 17 0.00037 23.1 7.6 52 138-196 13-64 (66)
122 cd04937 ACT_AKi-DapG-BS_2 ACT 75.3 19 0.00041 23.2 7.2 21 138-158 13-33 (64)
123 cd04916 ACT_AKiii-YclM-BS_2 AC 74.0 19 0.00042 22.7 7.3 52 138-196 13-64 (66)
124 cd04915 ACT_AK-Ectoine_2 ACT d 73.8 15 0.00032 24.1 5.6 51 139-196 14-64 (66)
125 COG0317 SpoT Guanosine polypho 72.1 13 0.00028 36.1 6.8 59 119-177 613-676 (701)
126 cd04924 ACT_AK-Arch_2 ACT doma 72.0 22 0.00047 22.4 7.4 52 138-196 13-64 (66)
127 PRK08526 threonine dehydratase 71.0 30 0.00065 31.2 8.7 65 127-193 324-393 (403)
128 COG0077 PheA Prephenate dehydr 70.7 32 0.00069 29.7 8.3 62 131-194 196-258 (279)
129 PRK10622 pheA bifunctional cho 70.2 31 0.00068 31.0 8.6 59 134-194 302-361 (386)
130 cd04868 ACT_AK-like ACT domain 70.2 21 0.00045 21.4 5.8 27 139-165 13-39 (60)
131 COG2061 ACT-domain-containing 69.8 30 0.00065 27.3 7.2 48 130-177 6-56 (170)
132 PRK11898 prephenate dehydratas 68.7 32 0.0007 29.5 8.0 62 130-193 197-260 (283)
133 PLN02705 beta-amylase 65.9 8.2 0.00018 36.8 4.0 33 21-53 77-109 (681)
134 PRK00227 glnD PII uridylyl-tra 65.8 11 0.00025 36.5 5.1 59 130-196 632-690 (693)
135 COG3978 Acetolactate synthase 63.1 50 0.0011 23.2 7.6 61 130-194 4-66 (86)
136 PF13840 ACT_7: ACT domain ; P 62.2 14 0.00031 24.2 3.7 33 129-161 6-42 (65)
137 cd04923 ACT_AK-LysC-DapG-like_ 59.4 39 0.00086 20.8 7.3 25 138-162 12-36 (63)
138 PF05687 DUF822: Plant protein 58.7 12 0.00026 29.2 3.1 31 23-53 6-36 (150)
139 PRK00907 hypothetical protein; 58.6 45 0.00097 23.9 5.9 65 128-194 16-84 (92)
140 cd04932 ACT_AKiii-LysC-EC_1 AC 58.5 54 0.0012 22.1 8.5 26 137-162 12-37 (75)
141 KOG4447 Transcription factor T 58.4 6.3 0.00014 31.0 1.6 24 35-58 29-52 (173)
142 cd04921 ACT_AKi-HSDH-ThrA-like 57.3 53 0.0012 21.7 7.2 37 138-176 13-49 (80)
143 PRK14646 hypothetical protein; 56.9 93 0.002 24.3 8.1 44 145-188 12-55 (155)
144 TIGR01270 Trp_5_monoox tryptop 56.4 54 0.0012 30.4 7.4 48 130-177 32-81 (464)
145 cd04890 ACT_AK-like_1 ACT doma 55.3 50 0.0011 20.7 5.7 25 138-162 12-36 (62)
146 PF02344 Myc-LZ: Myc leucine z 55.2 15 0.00032 21.0 2.3 18 35-52 12-29 (32)
147 PLN02317 arogenate dehydratase 54.2 98 0.0021 28.0 8.6 32 137-168 291-322 (382)
148 COG2716 GcvR Glycine cleavage 54.0 14 0.0003 29.6 2.9 62 129-193 5-66 (176)
149 PRK14637 hypothetical protein; 53.3 1.1E+02 0.0023 23.9 7.8 57 138-196 6-65 (151)
150 COG3074 Uncharacterized protei 52.2 30 0.00064 23.6 3.8 26 66-91 13-38 (79)
151 TIGR01268 Phe4hydrox_tetr phen 51.6 81 0.0018 29.0 7.8 48 131-178 18-66 (436)
152 cd04910 ACT_AK-Ectoine_1 ACT d 51.3 66 0.0014 21.8 5.6 52 139-197 14-65 (71)
153 PF06005 DUF904: Protein of un 51.0 35 0.00077 23.2 4.2 26 66-91 13-38 (72)
154 COG2716 GcvR Glycine cleavage 50.8 65 0.0014 25.9 6.2 66 128-195 91-162 (176)
155 COG0440 IlvH Acetolactate synt 50.4 65 0.0014 25.6 6.2 63 132-197 7-71 (163)
156 PRK08639 threonine dehydratase 50.0 1E+02 0.0022 27.8 8.3 66 127-194 334-401 (420)
157 PF02120 Flg_hook: Flagellar h 49.8 77 0.0017 21.3 5.9 47 118-165 27-79 (85)
158 COG1707 ACT domain-containing 49.2 89 0.0019 25.2 6.7 59 131-193 4-64 (218)
159 PF03698 UPF0180: Uncharacteri 48.4 47 0.001 23.2 4.5 54 142-195 9-78 (80)
160 PRK06349 homoserine dehydrogen 47.6 1.3E+02 0.0029 27.2 8.6 36 129-164 348-383 (426)
161 cd04912 ACT_AKiii-LysC-EC-like 46.0 87 0.0019 20.8 7.1 25 137-161 12-36 (75)
162 PF09006 Surfac_D-trimer: Lung 45.3 30 0.00066 21.6 2.8 21 73-93 1-21 (46)
163 TIGR02079 THD1 threonine dehyd 45.2 1.5E+02 0.0031 26.8 8.5 65 127-193 323-389 (409)
164 PRK14634 hypothetical protein; 44.8 1.1E+02 0.0023 23.9 6.7 48 148-195 15-65 (155)
165 PRK14639 hypothetical protein; 43.0 1.3E+02 0.0028 23.1 6.7 49 146-196 3-54 (140)
166 PRK03094 hypothetical protein; 42.7 53 0.0011 23.0 4.1 52 142-196 9-79 (80)
167 PRK14645 hypothetical protein; 42.6 1.4E+02 0.0031 23.3 7.0 52 145-196 14-68 (154)
168 smart00338 BRLZ basic region l 42.5 38 0.00083 22.1 3.3 23 70-92 25-47 (65)
169 PF10393 Matrilin_ccoil: Trime 41.3 69 0.0015 20.1 4.0 28 65-92 17-44 (47)
170 PRK15422 septal ring assembly 41.1 57 0.0012 22.7 4.0 26 66-91 13-38 (79)
171 PRK06291 aspartate kinase; Pro 40.9 1.9E+02 0.0041 26.5 8.6 40 127-166 319-361 (465)
172 TIGR00656 asp_kin_monofn aspar 40.8 2.3E+02 0.005 25.1 9.0 37 127-163 258-297 (401)
173 cd04936 ACT_AKii-LysC-BS-like_ 40.0 88 0.0019 19.1 7.2 25 138-162 12-36 (63)
174 KOG3582 Mlx interactors and re 39.9 9.6 0.00021 36.8 0.0 60 26-88 785-849 (856)
175 cd04871 ACT_PSP_2 ACT domains 39.1 33 0.00072 23.7 2.7 59 134-195 4-72 (84)
176 cd04891 ACT_AK-LysC-DapG-like_ 38.2 89 0.0019 18.7 4.9 40 137-176 9-49 (61)
177 PF00170 bZIP_1: bZIP transcri 37.9 52 0.0011 21.4 3.4 22 70-91 25-46 (64)
178 TIGR01834 PHA_synth_III_E poly 36.2 1E+02 0.0022 27.2 5.7 30 64-93 289-318 (320)
179 PF08826 DMPK_coil: DMPK coile 35.7 92 0.002 20.5 4.2 54 34-92 7-60 (61)
180 PRK12483 threonine dehydratase 35.4 2.6E+02 0.0055 26.3 8.6 37 127-165 343-379 (521)
181 PRK10820 DNA-binding transcrip 35.2 59 0.0013 30.3 4.4 36 131-166 2-37 (520)
182 cd04933 ACT_AK1-AT_1 ACT domai 35.2 1.5E+02 0.0032 20.3 7.6 26 137-162 12-37 (78)
183 PRK00341 hypothetical protein; 35.1 1.3E+02 0.0029 21.3 5.3 61 130-193 18-82 (91)
184 PTZ00324 glutamate dehydrogena 34.5 2.9E+02 0.0064 28.3 9.2 77 118-194 217-299 (1002)
185 PF11619 P53_C: Transcription 34.2 64 0.0014 21.7 3.2 34 119-152 6-39 (71)
186 PF09849 DUF2076: Uncharacteri 34.0 1.3E+02 0.0027 25.6 5.8 48 40-90 6-74 (247)
187 PRK13702 replication protein; 33.8 1E+02 0.0022 21.8 4.3 29 31-59 23-53 (85)
188 TIGR00656 asp_kin_monofn aspar 33.5 2.7E+02 0.0058 24.7 8.3 59 129-196 337-398 (401)
189 PF14197 Cep57_CLD_2: Centroso 32.9 94 0.002 20.9 4.0 28 63-90 39-66 (69)
190 PRK02047 hypothetical protein; 32.8 1.8E+02 0.0039 20.5 5.8 64 128-193 15-82 (91)
191 PF02680 DUF211: Uncharacteriz 32.0 2E+02 0.0043 20.8 6.6 53 118-170 35-87 (95)
192 KOG2663 Acetolactate synthase, 32.0 1E+02 0.0022 26.5 4.8 63 130-195 78-142 (309)
193 PRK14647 hypothetical protein; 31.7 2.5E+02 0.0054 21.9 7.1 48 147-196 15-65 (159)
194 cd04934 ACT_AK-Hom3_1 CT domai 31.0 1.6E+02 0.0036 19.6 7.5 25 138-162 13-37 (73)
195 PF14992 TMCO5: TMCO5 family 31.0 75 0.0016 27.5 4.0 25 65-89 145-169 (280)
196 PRK08818 prephenate dehydrogen 31.0 1.5E+02 0.0033 26.5 6.1 45 129-176 297-342 (370)
197 PHA03386 P10 fibrous body prot 30.4 1.2E+02 0.0026 21.8 4.3 34 60-93 1-34 (94)
198 cd04935 ACT_AKiii-DAPDC_1 ACT 30.4 1.7E+02 0.0037 19.6 6.5 26 137-162 12-37 (75)
199 PRK08210 aspartate kinase I; R 30.2 2.7E+02 0.0059 24.8 7.7 60 128-196 338-400 (403)
200 PF13399 LytR_C: LytR cell env 30.0 1.7E+02 0.0037 19.9 5.2 28 137-164 12-39 (90)
201 PF14689 SPOB_a: Sensor_kinase 29.3 1.6E+02 0.0035 19.0 5.0 41 37-84 17-57 (62)
202 PF04508 Pox_A_type_inc: Viral 29.0 95 0.0021 16.5 2.7 17 73-89 3-19 (23)
203 PF05088 Bac_GDH: Bacterial NA 28.9 2.5E+02 0.0054 30.2 8.0 70 128-197 16-105 (1528)
204 PRK14640 hypothetical protein; 28.8 2.8E+02 0.006 21.5 6.8 49 146-196 12-63 (152)
205 cd04907 ACT_ThrD-I_2 Second of 28.8 1.9E+02 0.0042 19.7 7.8 61 130-194 2-63 (81)
206 cd04913 ACT_AKii-LysC-BS-like_ 28.7 1.5E+02 0.0033 18.5 6.8 40 137-176 10-50 (75)
207 PF02576 DUF150: Uncharacteris 28.3 2.6E+02 0.0056 21.0 8.3 44 148-193 4-47 (141)
208 PRK06291 aspartate kinase; Pro 28.2 3.4E+02 0.0074 24.8 8.2 62 128-196 397-461 (465)
209 PRK00092 ribosome maturation p 28.0 2.8E+02 0.0061 21.3 6.9 48 147-196 14-64 (154)
210 PRK09224 threonine dehydratase 28.0 4.1E+02 0.0088 24.7 8.7 64 128-194 327-391 (504)
211 PRK11790 D-3-phosphoglycerate 27.6 1.5E+02 0.0033 26.7 5.7 61 129-194 338-398 (409)
212 PF12344 UvrB: Ultra-violet re 27.4 67 0.0015 19.8 2.3 31 27-57 7-37 (44)
213 PRK11020 hypothetical protein; 27.4 1.2E+02 0.0027 22.6 4.1 53 36-88 3-55 (118)
214 COG0779 Uncharacterized protei 27.1 2.4E+02 0.0053 22.1 6.0 50 144-195 11-64 (153)
215 PLN02551 aspartokinase 26.9 3.8E+02 0.0082 25.2 8.3 61 129-196 445-507 (521)
216 TIGR01124 ilvA_2Cterm threonin 26.6 4.4E+02 0.0095 24.5 8.6 63 127-193 323-386 (499)
217 COG4710 Predicted DNA-binding 26.5 1.5E+02 0.0032 20.4 4.0 32 42-77 15-47 (80)
218 PRK14636 hypothetical protein; 26.1 3.4E+02 0.0074 21.6 7.4 49 148-196 13-64 (176)
219 PF07927 YcfA: YcfA-like prote 26.1 1.7E+02 0.0036 18.0 5.4 48 144-195 2-56 (56)
220 PRK14630 hypothetical protein; 25.9 3.1E+02 0.0066 21.1 6.8 40 146-187 14-53 (143)
221 PRK09977 putative Mg(2+) trans 25.7 3.8E+02 0.0083 22.1 9.0 63 128-194 143-205 (215)
222 PRK09034 aspartate kinase; Rev 25.6 3.6E+02 0.0078 24.6 7.8 38 128-165 384-424 (454)
223 PF06305 DUF1049: Protein of u 25.6 78 0.0017 20.5 2.6 17 73-89 50-66 (68)
224 COG3283 TyrR Transcriptional r 25.3 1.6E+02 0.0035 27.0 5.1 37 131-167 2-38 (511)
225 smart00596 PRE_C2HC PRE_C2HC d 25.2 2.2E+02 0.0049 19.3 4.7 24 144-167 2-25 (69)
226 PRK06635 aspartate kinase; Rev 25.2 3.6E+02 0.0078 23.9 7.6 34 128-161 339-375 (404)
227 cd04920 ACT_AKiii-DAPDC_2 ACT 25.0 1.9E+02 0.0042 18.4 6.0 50 138-196 12-61 (63)
228 PRK14641 hypothetical protein; 24.7 3.5E+02 0.0077 21.5 6.7 44 151-196 20-66 (173)
229 PF09789 DUF2353: Uncharacteri 24.7 2.6E+02 0.0057 24.7 6.3 53 39-91 38-99 (319)
230 PRK13581 D-3-phosphoglycerate 24.6 3.2E+02 0.007 25.5 7.4 56 134-194 457-514 (526)
231 PLN02551 aspartokinase 24.4 3.9E+02 0.0085 25.1 7.9 35 128-162 365-402 (521)
232 PF14193 DUF4315: Domain of un 24.2 1.6E+02 0.0035 20.6 4.1 27 66-92 10-36 (83)
233 cd04911 ACT_AKiii-YclM-BS_1 AC 24.0 2.5E+02 0.0053 19.3 5.2 29 137-165 12-40 (76)
234 PF10369 ALS_ss_C: Small subun 23.7 2.1E+02 0.0046 19.2 4.6 32 129-162 4-35 (75)
235 PF07485 DUF1529: Domain of Un 23.5 3.2E+02 0.007 20.5 6.7 54 140-197 67-121 (123)
236 PF00585 Thr_dehydrat_C: C-ter 23.5 1.7E+02 0.0037 20.5 4.2 49 127-176 8-59 (91)
237 PF04359 DUF493: Protein of un 23.5 1.2E+02 0.0026 20.8 3.4 49 129-177 10-62 (85)
238 PRK14633 hypothetical protein; 23.3 3.5E+02 0.0076 20.8 6.9 48 146-196 10-60 (150)
239 PRK07431 aspartate kinase; Pro 23.2 3.9E+02 0.0085 25.2 7.7 60 128-196 347-409 (587)
240 PF13887 MRF_C1: Myelin gene r 23.2 1.5E+02 0.0033 17.5 3.1 32 60-91 3-34 (36)
241 PF04468 PSP1: PSP1 C-terminal 23.0 2.7E+02 0.0058 19.4 5.9 41 153-197 40-80 (88)
242 PF12229 PG_binding_4: Putativ 22.0 1.4E+02 0.0031 20.6 3.7 55 141-198 53-108 (114)
243 PRK08210 aspartate kinase I; R 21.9 5.7E+02 0.012 22.7 8.8 36 128-163 270-306 (403)
244 PF07293 DUF1450: Protein of u 21.9 2.8E+02 0.0061 19.2 5.1 66 132-198 5-74 (78)
245 cd07940 DRE_TIM_IPMS 2-isoprop 21.4 4.4E+02 0.0095 22.0 7.1 38 130-168 190-228 (268)
246 TIGR01327 PGDH D-3-phosphoglyc 20.8 3.6E+02 0.0079 25.1 6.9 56 134-194 456-513 (525)
247 PLN02550 threonine dehydratase 20.4 4.3E+02 0.0092 25.4 7.3 62 128-193 416-478 (591)
248 PF07106 TBPIP: Tat binding pr 20.1 4.2E+02 0.0091 20.5 6.4 29 66-94 111-139 (169)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.49 E-value=4.5e-14 Score=93.32 Aligned_cols=54 Identities=35% Similarity=0.588 Sum_probs=50.4
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHH
Q 042649 27 DFKSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTV 80 (199)
Q Consensus 27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~ 80 (199)
..+..|+..||+||++||..|..|+++||.. .|+||++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999988 79999999999999999999876
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.48 E-value=3.7e-14 Score=92.64 Aligned_cols=49 Identities=39% Similarity=0.676 Sum_probs=46.3
Q ss_pred cccccHHHHHHHHHHHHHHHHHhccCCCC-----CCCCcccHHHHHHHHHHHHH
Q 042649 29 KSKNLTAERRRREKLSNRLLTLRSLVPII-----TNMNKATIVEDAITYIEKLQ 77 (199)
Q Consensus 29 ~~~h~~~Er~RR~~~~~~~~~LrslvP~~-----~k~dk~sil~~ai~yi~~L~ 77 (199)
+..|+..||+||++||+.|..|+.+||.. .|.||++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999986 48999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.44 E-value=2.2e-13 Score=88.06 Aligned_cols=49 Identities=41% Similarity=0.582 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC---CCCCCcccHHHHHHHHHHHHHHHHH
Q 042649 33 LTAERRRREKLSNRLLTLRSLVPI---ITNMNKATIVEDAITYIEKLQMTVK 81 (199)
Q Consensus 33 ~~~Er~RR~~~~~~~~~LrslvP~---~~k~dk~sil~~ai~yi~~L~~~~~ 81 (199)
+..||+||++||+.|..|+++||. ..++||++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 5699999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.97 E-value=1e-09 Score=97.55 Aligned_cols=61 Identities=34% Similarity=0.542 Sum_probs=54.5
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHhccCCCCC----CCCcccHHHHHHHHHHHHHHHHHH
Q 042649 22 YGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT----NMNKATIVEDAITYIEKLQMTVKV 82 (199)
Q Consensus 22 ~~~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~----k~dk~sil~~ai~yi~~L~~~~~~ 82 (199)
+..++..|..|++.||+||++||+++..|..|||.+. +..|..||..+++||..||+..++
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999999874 777999999999999999988773
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.96 E-value=1.2e-08 Score=70.89 Aligned_cols=68 Identities=6% Similarity=0.092 Sum_probs=60.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccC----HHHHHHHHHHHHhc
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIE----AEQVKELLQEIIKS 198 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s----~~~lk~~L~~~i~~ 198 (199)
.|+|.|+++||+|.+|..+|-.+|++|.+|.++|.|+++..+|.+.-.+|.+++ .+.|+++|.++|.|
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999999999999999977787765 35777888887765
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.87 E-value=2.4e-09 Score=85.28 Aligned_cols=68 Identities=24% Similarity=0.397 Sum_probs=59.8
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCCCCC-------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT-------NMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~-------k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.++++..|..+||+||+.||..++.|..|||.+. |+.||-||..+|+||.+|..++..-+++..+|..
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999999553 7889999999999999999998888888776654
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.85 E-value=4.3e-08 Score=67.54 Aligned_cols=66 Identities=6% Similarity=0.145 Sum_probs=56.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.|+|.++++||+|.+|.++|..+||+|..|.|+|.|+++..+|.+.-.+|.+++-.+..+.|.+.|
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L 68 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSL 68 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 588999999999999999999999999999999999999999999977777776544444554443
No 8
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.69 E-value=3.8e-08 Score=81.78 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=68.5
Q ss_pred cccCCCcccc--CCCCCCCCCCccccccccHHHHHHHHHHHHHHHHH-hccCCCCC-CCCcccHHHHHHHHHHHHHHHHH
Q 042649 6 SASTQSCITQ--KRGRRVYGDDRDFKSKNLTAERRRREKLSNRLLTL-RSLVPIIT-NMNKATIVEDAITYIEKLQMTVK 81 (199)
Q Consensus 6 ~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~Er~RR~~~~~~~~~L-rslvP~~~-k~dk~sil~~ai~yi~~L~~~~~ 81 (199)
.+++|+|..| +-+||+ ...-.+|....+.||+|=+|+|+.|.+| |.-.+|.. ...|+.||..||+||..||.-++
T Consensus 95 hh~~g~cl~wackackrk-s~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~ 173 (284)
T KOG3960|consen 95 HHQAGQCLLWACKACKRK-STSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQ 173 (284)
T ss_pred ccCCcchHHHhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999 555544 3333444557899999999999999999 66666665 78999999999999999999999
Q ss_pred HHHHHHHHh
Q 042649 82 VLSDQLLEM 90 (199)
Q Consensus 82 ~l~~~~~~~ 90 (199)
++.+....+
T Consensus 174 ~~~~~~~~~ 182 (284)
T KOG3960|consen 174 EQDQAEKGL 182 (284)
T ss_pred Hhhccchhh
Confidence 988777654
No 9
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=4.8e-07 Score=62.81 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=55.8
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeccCCcccC----HHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVT--TFKGATLISSCLNGVYSYKIE----AEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs--~~~~~v~~t~~ve~~~~~~~s----~~~lk~~L~~~i 196 (199)
.|+|.|.+++|+|.+|.++|..+|++|..|.++ |.|+++..+|.+. .+|.+++ .+.|+++|.+++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ-SDGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe-CCCCccCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999 9999999999995 5555553 356777777665
No 10
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.61 E-value=6.4e-07 Score=62.15 Aligned_cols=67 Identities=10% Similarity=0.214 Sum_probs=54.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCcccC---HHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKIE---AEQVKELLQEII 196 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~s---~~~lk~~L~~~i 196 (199)
+.++|.|++++|+|.++..+|..+|++|++|.+++ .++.++.+|.+.-.++...+ .++|+++|.+++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999996 89999999999844433122 245666666655
No 11
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.59 E-value=1.1e-06 Score=60.26 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=51.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-KGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.|.|.|++++|+|.++..+|..+|++|++|.+.+. +|.++.+|.+...++..+..++..++|.+.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~ 68 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREA 68 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHH
Confidence 57899999999999999999999999999999887 689999999985555555443333344433
No 12
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.44 E-value=9.6e-07 Score=73.58 Aligned_cols=67 Identities=18% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCCC--CCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT--NMN-KATIVEDAITYIEKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~--k~d-k~sil~~ai~yi~~L~~~~~~l~~~~~~~ 90 (199)
.....+..|+..||+||..|++.|..|+.+||... +.. .++||..|..||+.|+.+.......++++
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556778999999999999999999999999764 333 68999999999999998877766666544
No 13
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.42 E-value=4.4e-06 Score=57.51 Aligned_cols=67 Identities=9% Similarity=0.189 Sum_probs=55.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccC-Cccc-C---HHHHHHHHHHHHh
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVY-SYKI-E---AEQVKELLQEIIK 197 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~-~~~~-s---~~~lk~~L~~~i~ 197 (199)
.|+|.+++++|+|.+|..+|..+|+.|++|.+.+.++.++.+|.+...+ +..+ . .+.|+++|.+++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999987443 3323 2 3577777777664
No 14
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.41 E-value=1.7e-07 Score=79.11 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=50.9
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCC--------CCCCcccHHHHHHHHHHHHHHHHHH
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPII--------TNMNKATIVEDAITYIEKLQMTVKV 82 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--------~k~dk~sil~~ai~yi~~L~~~~~~ 82 (199)
....++..|-..||+||++||+.+..|+.|||.. +|++||.||+-|++|++.|+.....
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 3446677899999999999999999999999932 5889999999999999999876543
No 15
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.35 E-value=5.8e-07 Score=85.99 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=51.7
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHhccCCCCC----CCCcccHHHHHHHHHHHHHHH
Q 042649 22 YGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT----NMNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 22 ~~~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~----k~dk~sil~~ai~yi~~L~~~ 79 (199)
...++..+.+|+.+||+||++||..+..|.+|||.+. |+||..||..||.+|+.+++.
T Consensus 14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3445556889999999999999999999999999764 999999999999999998875
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=2.7e-05 Score=52.12 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=51.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~ 194 (199)
.|.|.|++++|+|.+|+.+|.++++.|.++.+.+.++.++.+|++...++...+.+ .|+++|.+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~ 68 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGE 68 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999889999999986555444442 34444443
No 17
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.17 E-value=4.1e-05 Score=52.12 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=54.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.|-|.|++++|+|..+..+|..+||+|+.|.+.+ .+|.++.+|.+...+| -....|.++|+.++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 4778999999999999999999999999999996 4788999999884333 46678888888765
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.11 E-value=4.9e-05 Score=51.91 Aligned_cols=65 Identities=6% Similarity=0.184 Sum_probs=52.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.|.|.+++++|+|.+|..+|.+++++|+++.+.+.++.++.+|.+.-.++...+. +..++|.+.|
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCH-HHHHHHHHHh
Confidence 4677889999999999999999999999999999988888899887545544443 3445565554
No 19
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.04 E-value=2.4e-06 Score=72.91 Aligned_cols=62 Identities=26% Similarity=0.391 Sum_probs=52.3
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHH
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPII--TNMNKATIVEDAITYIEKLQMTVKVLSD 85 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~ 85 (199)
+..-+|.-.+..||+|-+-||..|..||+|+|.- .|.+||.||..+.+||.+|+.+.-+|-.
T Consensus 56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~ 119 (373)
T KOG0561|consen 56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLP 119 (373)
T ss_pred HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccccc
Confidence 3334566678889999999999999999999964 4999999999999999999987655443
No 20
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.99 E-value=2.1e-05 Score=55.17 Aligned_cols=53 Identities=25% Similarity=0.531 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCCCCC------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042649 41 EKLSNRLLTLRSLVPIIT------NMNKATIVEDAITYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 41 ~~~~~~~~~LrslvP~~~------k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
+.|++....|++|+|... |.+-+-+|.||.+||+.|+.++..|.+++.+|-++
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999542 44455589999999999999999999999988765
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.91 E-value=8.4e-05 Score=73.01 Aligned_cols=80 Identities=13% Similarity=0.184 Sum_probs=64.8
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCH---HHHHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEA---EQVKELLQ 193 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~---~~lk~~L~ 193 (199)
+.|.+..- ++.--.|+|.|.++||+|.+|.++|.++|++|.+|.|+|.|+++..+|.|.-.+|.+++. +.|+++|.
T Consensus 796 ~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~ 875 (884)
T PRK05007 796 TEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLT 875 (884)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 44555332 234578999999999999999999999999999999999999999999998667777773 46666776
Q ss_pred HHHh
Q 042649 194 EIIK 197 (199)
Q Consensus 194 ~~i~ 197 (199)
.++.
T Consensus 876 ~~l~ 879 (884)
T PRK05007 876 EALN 879 (884)
T ss_pred HHHh
Confidence 6653
No 22
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.90 E-value=0.00016 Score=49.87 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=54.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
.+.|.+.++++||++..|..+|.++|.+|.+++.++.++.+...+.++..+ -+.++|+.+|.++-+
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE---DSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc---ccHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999888542 267888888887644
No 23
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.87 E-value=2.4e-05 Score=65.19 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=55.2
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHHHHhccCCC----CCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 042649 22 YGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPI----ITNMNKATIVEDAITYIEKLQMTVKVLSDQ 86 (199)
Q Consensus 22 ~~~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~----~~k~dk~sil~~ai~yi~~L~~~~~~l~~~ 86 (199)
.+....++..++..||+|=+.+|..|..||.+||. .+|.+|..+|.-||.||..|+.-++.-...
T Consensus 103 ~~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 103 SSQTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred ccchhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 34566777788999999999999999999999994 458999999999999999999877654433
No 24
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.81 E-value=0.00042 Score=45.89 Aligned_cols=65 Identities=11% Similarity=0.196 Sum_probs=49.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.|.|.|++++|+|.+|..+|.++++.|.++.+.+.++.....|.+...++...+. +-.+.|.+.|
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~l~~~l 66 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPLDP-ERIARLEEAL 66 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcCCH-HHHHHHHHHH
Confidence 4678999999999999999999999999999999887777888888555433332 3333444444
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.78 E-value=0.00049 Score=45.03 Aligned_cols=61 Identities=16% Similarity=0.285 Sum_probs=48.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG--ATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~--~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.|.+.|+++||+|.+|.++|.++|+.|.++...+.++ ..+..+... +.-..+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV----DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE----EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC----CCCCHHHHHHHHHcc
Confidence 5788999999999999999999999999999999887 333332222 335677788887764
No 26
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.77 E-value=0.00017 Score=70.59 Aligned_cols=79 Identities=10% Similarity=0.109 Sum_probs=64.5
Q ss_pred ccEEEEE-ecCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCH---HHHHHHHH
Q 042649 118 EKVEVTN-VDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEA---EQVKELLQ 193 (199)
Q Consensus 118 ~~V~V~~-~~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~---~~lk~~L~ 193 (199)
+.|.+.. .++.--.|+|.+.++||+|..|.++|.++|++|..|.|+|.++++..+|.|...+|.+++. ++|+++|.
T Consensus 771 ~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~ 850 (854)
T PRK01759 771 TEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLL 850 (854)
T ss_pred CEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 4555533 2234578999999999999999999999999999999999999999999998766766663 56777776
Q ss_pred HHH
Q 042649 194 EII 196 (199)
Q Consensus 194 ~~i 196 (199)
.+|
T Consensus 851 ~~l 853 (854)
T PRK01759 851 SNL 853 (854)
T ss_pred HHh
Confidence 665
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.75 E-value=0.00028 Score=69.43 Aligned_cols=80 Identities=9% Similarity=0.147 Sum_probs=64.9
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCH----HHHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEA----EQVKELL 192 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~----~~lk~~L 192 (199)
+.|.+..- +.+...|.|.+.+++|+|.+|..+|..+|++|++|.|+|.+++++.+|.|.-.+|..++. +.|+++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 44555432 234578999999999999999999999999999999999999999999998666655533 5678888
Q ss_pred HHHHh
Q 042649 193 QEIIK 197 (199)
Q Consensus 193 ~~~i~ 197 (199)
.++|.
T Consensus 882 ~~~L~ 886 (895)
T PRK00275 882 CEQLD 886 (895)
T ss_pred HHHHh
Confidence 87774
No 28
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.73 E-value=0.00055 Score=47.32 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=55.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+.|.+.|++++|+...|-+.|.++|..|+.++....++.++..+.+... ..+.++|.+.|...-
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999888887743 247888888887643
No 29
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.72 E-value=0.00042 Score=67.98 Aligned_cols=81 Identities=10% Similarity=0.212 Sum_probs=65.7
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCH---HHHHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEA---EQVKELLQ 193 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~---~~lk~~L~ 193 (199)
+.|.+..- +++-..|.|.+.++||+|.+|..+|.++|++|..|.|+|.+++++.+|.|...+|..++. ++|+++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 45665442 234578999999999999999999999999999999999999999999998655554433 67888888
Q ss_pred HHHhc
Q 042649 194 EIIKS 198 (199)
Q Consensus 194 ~~i~~ 198 (199)
.++..
T Consensus 864 ~~l~~ 868 (869)
T PRK04374 864 ACLDP 868 (869)
T ss_pred HHhcc
Confidence 77653
No 30
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.62 E-value=0.0007 Score=65.73 Aligned_cols=71 Identities=11% Similarity=0.257 Sum_probs=62.4
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
.+...|.|.|+++||+|..|..+|..+|++|++|++.+.+|.++.+|.|....|.....+.|+++|.+++.
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999999998655555556889999988775
No 31
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.54 E-value=0.00061 Score=48.09 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=56.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+.|.+.|+++||++..|.+.|-++|++|.+.+..+.++.++..+.+... +...+.++|.+.|..+-
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999988888888888743 22467888988887653
No 32
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.54 E-value=4.1e-05 Score=73.96 Aligned_cols=66 Identities=26% Similarity=0.428 Sum_probs=59.4
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT-NMNKATIVEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~-k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
..+|.+||+.||+-|--||+++..|+.+||... |..|..+|..||+||++|+...+.+....+.++
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 467889999999999999999999999999764 999999999999999999998888887776554
No 33
>PRK00194 hypothetical protein; Validated
Probab=97.52 E-value=0.00079 Score=47.56 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=55.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+.|.+.|+++||++..|.+.|-++|+.|.+.+..+.++.+...+.+... +...+.++|.+.|..+-
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999988877777777743 22356788888877643
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.50 E-value=0.00097 Score=65.97 Aligned_cols=80 Identities=10% Similarity=0.231 Sum_probs=64.9
Q ss_pred ccEEEEEec-CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccC----HHHHHHHH
Q 042649 118 EKVEVTNVD-GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIE----AEQVKELL 192 (199)
Q Consensus 118 ~~V~V~~~~-~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s----~~~lk~~L 192 (199)
+.|.+.... .+...|.|.|.+++|+|.+|..+|.++|++|.+|.+.|.++++..+|.+...+|..+. .++|+++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 455554422 3357899999999999999999999999999999999999999999999865555443 35788888
Q ss_pred HHHHh
Q 042649 193 QEIIK 197 (199)
Q Consensus 193 ~~~i~ 197 (199)
.++|.
T Consensus 911 ~~~L~ 915 (931)
T PRK05092 911 LAALA 915 (931)
T ss_pred HHHhc
Confidence 87774
No 35
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.45 E-value=0.0023 Score=43.96 Aligned_cols=62 Identities=11% Similarity=0.241 Sum_probs=52.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK------GATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~------~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
|.+.|++++|++.+|-+.|.++|+.|.+.+..+.+ +.+...+.+...+ ..+..++++.|..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHH
Confidence 67999999999999999999999999999999987 6666677777542 46788999888764
No 36
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.41 E-value=0.0016 Score=63.22 Aligned_cols=66 Identities=8% Similarity=0.144 Sum_probs=55.9
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
+...|.|.|.++||+|.+|..+|..+|++|.+|.++|.++.++.+|.|...+|..++-+ .+.|.+.
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~ 771 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQA 771 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHH
Confidence 35889999999999999999999999999999999999999999999996666666533 3444443
No 37
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.41 E-value=0.0041 Score=42.81 Aligned_cols=50 Identities=14% Similarity=0.268 Sum_probs=41.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEecc
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGV 178 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~ 178 (199)
.+.|+|.+.+++|+|.+|.+++.+.++.|.+.++... ++.+...+.+++.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 5678899999999999999999999999999999995 6777778888863
No 38
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.38 E-value=0.0014 Score=64.24 Aligned_cols=79 Identities=11% Similarity=0.236 Sum_probs=63.2
Q ss_pred ccEEEEEec-CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCH---HHHHHHHH
Q 042649 118 EKVEVTNVD-GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEA---EQVKELLQ 193 (199)
Q Consensus 118 ~~V~V~~~~-~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~---~~lk~~L~ 193 (199)
+.|.+..-. .+-..|.|.|.++||+|.+|.++|.++|++|.++.++|.++++..+|.+....|..++. +.|+++|.
T Consensus 767 ~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~ 846 (850)
T TIGR01693 767 PRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLA 846 (850)
T ss_pred CeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHH
Confidence 456554332 34578999999999999999999999999999999999999999999998666666553 56666666
Q ss_pred HHH
Q 042649 194 EII 196 (199)
Q Consensus 194 ~~i 196 (199)
+++
T Consensus 847 ~~l 849 (850)
T TIGR01693 847 ASV 849 (850)
T ss_pred HHh
Confidence 554
No 39
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.36 E-value=0.0017 Score=63.83 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=59.9
Q ss_pred cEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCc-ccCHHHHHHHHHHHH
Q 042649 119 KVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSY-KIEAEQVKELLQEII 196 (199)
Q Consensus 119 ~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~-~~s~~~lk~~L~~~i 196 (199)
.|.+..- +++...|.|.|+++||+|.+|..+|..+|++|++|.++|.+++++.+|.|...+.. .-..+.|+++|.++|
T Consensus 775 ~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 775 RVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred eEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 4444332 23467899999999999999999999999999999999999999999999532211 112356777777665
No 40
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0014 Score=43.63 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=56.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccC-CcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVY-SYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~-~~~~s~~~lk~~L~~~ 195 (199)
.|.|.|+++.|+=.++.+.+-+.||.|+...+++.|..-+..|.+.... .-.+.-+-||++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 4889999999999999999999999999999999999888888877433 2456778999998875
No 41
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=97.33 E-value=0.0017 Score=63.64 Aligned_cols=71 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEeccCCcccCH----HHHHHHHHHHHh
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT-TFKGATLISSCLNGVYSYKIEA----EQVKELLQEIIK 197 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs-~~~~~v~~t~~ve~~~~~~~s~----~~lk~~L~~~i~ 197 (199)
.+...|.|.+++++|+|..|..+|..+|++|++|.+. +.+|.++.+|.|...+|..++. +.|.++|.++|.
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999 6799999999998666655543 457777777764
No 42
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0029 Score=43.25 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=54.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
|.+.++++||+..++.++|-++|++|.+.+.++.++.+...+.+....+ .+.++|.++|..+-.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~--~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS--ADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999999988777777775433 678999998887643
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.29 E-value=0.0024 Score=62.90 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=62.4
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCH---HHHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEA---EQVKELL 192 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~---~~lk~~L 192 (199)
+-|.+..- +.+...|.|.|++++|+|..|..+|..+|++|+.|.|.+.+ |.++.+|.|.-.+|..++. +.|++.|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKAL 768 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 34444332 23468899999999999999999999999999999988765 5999999998666665654 3477788
Q ss_pred HHHHh
Q 042649 193 QEIIK 197 (199)
Q Consensus 193 ~~~i~ 197 (199)
.++|.
T Consensus 769 ~~aL~ 773 (884)
T PRK05007 769 EQALT 773 (884)
T ss_pred HHHHc
Confidence 77764
No 44
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0032 Score=42.80 Aligned_cols=64 Identities=8% Similarity=0.175 Sum_probs=48.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
|.+.|++++|++.+|.+.|-++|+.+.+.+..+ .++.+...+.+... ...++.++|+++|..+-
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GFDLSREALEAAFAPVA 67 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHH
Confidence 789999999999999999999999999999886 33333322344421 12367899998887653
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0015 Score=62.98 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=61.7
Q ss_pred cccEEEEEec-CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 117 EEKVEVTNVD-GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 117 ~~~V~V~~~~-~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
.|.|....-. .+...+++.+.+++|+|..|-.+|..++++|.+|.|+|+|.++..+|++....+.+++. ++++.|.
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~-~~~q~l~ 854 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNA-ELRQSLL 854 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCH-HHHHHHH
Confidence 4566664432 23578999999999999999999999999999999999999999999999888877744 3444433
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=97.24 E-value=0.0029 Score=62.12 Aligned_cols=80 Identities=16% Similarity=0.200 Sum_probs=62.8
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCcccCHH---HHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKIEAE---QVKELL 192 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~s~~---~lk~~L 192 (199)
+.|.+..- +.+...|.|.|++++|+|..|..+|..+|++|++|.+.+ .+|.++.+|.|.-.+|..++.+ .|+++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 44555332 234578999999999999999999999999999999977 8999999999986666656543 566777
Q ss_pred HHHHh
Q 042649 193 QEIIK 197 (199)
Q Consensus 193 ~~~i~ 197 (199)
.+++.
T Consensus 745 ~~aL~ 749 (854)
T PRK01759 745 TKALN 749 (854)
T ss_pred HHHHc
Confidence 76664
No 47
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.92 E-value=0.0065 Score=59.99 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=57.2
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEeccCCccc-C----HHHHHHHHHHHHh
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT-TFKGATLISSCLNGVYSYKI-E----AEQVKELLQEIIK 197 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs-~~~~~v~~t~~ve~~~~~~~-s----~~~lk~~L~~~i~ 197 (199)
+...|.|.|++++|+|.+|..+|..+|++|++|.+. +.+|.++.+|.|.-.+|..+ . .+.|.++|.+++.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~ 778 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALR 778 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999985 56788999999986555543 2 3457777777764
No 48
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.78 E-value=0.015 Score=39.05 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=40.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEecc
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGV 178 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~ 178 (199)
|+|.+.+++|+|.+|+++|.+.|..|.+.++.... +.....+.+++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 67888999999999999999999999999988764 666666777753
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.69 E-value=0.014 Score=57.46 Aligned_cols=69 Identities=16% Similarity=0.149 Sum_probs=56.3
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEeccCCcccC----HHHHHHHHHHHHh
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT-TFKGATLISSCLNGVYSYKIE----AEQVKELLQEIIK 197 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs-~~~~~v~~t~~ve~~~~~~~s----~~~lk~~L~~~i~ 197 (199)
+...|.|.|++++|+|..+..+|..+|++|++|.+. +.+|.++.+|.|...++. .. .+.|.+.|.+++.
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHc
Confidence 468899999999999999999999999999999995 578899999999844443 32 3567777777663
No 50
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.018 Score=37.68 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=43.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-----KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-----~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.|.+++++|.|.+|+++|.+.|++|.+.+.... .+.....+.+++.+ .-..+.+.++|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 3578899999999999999999999999987764 34555556666421 2233455555543
No 51
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.018 Score=57.18 Aligned_cols=79 Identities=11% Similarity=0.174 Sum_probs=60.5
Q ss_pred ccEEEEEe-cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCccc----CHHHHHHH
Q 042649 118 EKVEVTNV-DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKI----EAEQVKEL 191 (199)
Q Consensus 118 ~~V~V~~~-~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~----s~~~lk~~ 191 (199)
+.|.+..- +.+...|.|.|++++|+|..|..+|..+|++|++|.+.+ .+|.++.+|.|...+|... ..+.|.+.
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 34544332 234688999999999999999999999999999999987 6788888898875444332 24567777
Q ss_pred HHHHH
Q 042649 192 LQEII 196 (199)
Q Consensus 192 L~~~i 196 (199)
|..++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 77766
No 52
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.51 E-value=0.02 Score=56.38 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=57.3
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCc-ccCHHHHHHHHHHHHh
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSY-KIEAEQVKELLQEIIK 197 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~-~~s~~~lk~~L~~~i~ 197 (199)
+...|.|.|++++|+|..|..+|..+|++|++|.+.+ .+|.++.+|.|...++. .-....|.+.|.++|.
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLA 760 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHc
Confidence 5688999999999999999999999999999999997 68899999999854442 1224557777777664
No 53
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.43 E-value=0.016 Score=39.34 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=36.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEec
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNG 177 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~ 177 (199)
.|+|.|.+++|++.+|+.++.+.+..+.+.++.+. +. ..+.+++
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v 45 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPT 45 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEe
Confidence 57899999999999999999999999999999775 44 2344443
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.023 Score=38.18 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=45.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.+.|.+++++|++.+|++.|.+.++.|...+.... ++.....|.++..+. ....++|.++|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-HHHHHHHHHHHhc
Confidence 47788899999999999999999999999987654 355555677774221 1244555555543
No 55
>PRK04435 hypothetical protein; Provisional
Probab=96.25 E-value=0.035 Score=43.20 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=52.0
Q ss_pred cCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 126 DGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 126 ~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.++.+.|.+.+.+++|+|.+|++.|.+.+++|...+.+.. +|....+|.++..+ .....++|.++|.+
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~-~~~~L~~Li~~L~~ 134 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS-MEGDIDELLEKLRN 134 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC-hHHHHHHHHHHHHc
Confidence 5678999999999999999999999999999999987653 56666677787422 12245566655553
No 56
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.24 E-value=0.05 Score=35.57 Aligned_cols=59 Identities=24% Similarity=0.273 Sum_probs=42.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
.+.+.+++++|.|.++++.|.++++.|.+.+....+ +....++.++. . -..+++.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~---~-~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG---V-GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec---c-ccHHHHHHHHh
Confidence 467889999999999999999999999998887653 44433444442 1 24445555554
No 57
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.058 Score=35.80 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=37.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEe
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLN 176 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve 176 (199)
++|+|.+.+++|++.+++..|.+.+..+.+.+..... +.....+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 4789999999999999999999999999999876643 4444444444
No 58
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.00 E-value=0.072 Score=45.94 Aligned_cols=66 Identities=9% Similarity=0.168 Sum_probs=53.6
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.+.|.+.|++++|+...|.++|-++|+.|.+.+.++ .+|.+.-.+.+.. +....+.++|.++|..+
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~~~~~L~~~L~~l 73 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIFNLETLRADFAAL 73 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCCCHHHHHHHHHHH
Confidence 577999999999999999999999999999999999 8886555555553 12235688898888765
No 59
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.98 E-value=0.073 Score=36.03 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=43.5
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEeccCC-cccCHHHHHHHHHH
Q 042649 134 IISKKKRSRITKFLEAMASHGFELSDTNVTTFKG-ATLISSCLNGVYS-YKIEAEQVKELLQE 194 (199)
Q Consensus 134 I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~-~v~~t~~ve~~~~-~~~s~~~lk~~L~~ 194 (199)
+..++++|.|.++++.|.++|+.+.+..+.+..+ .--+.|.++..+. .....+++.+.|.+
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4456789999999999999999999998887655 4456666664332 33445555555554
No 60
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.84 E-value=0.087 Score=45.31 Aligned_cols=63 Identities=10% Similarity=0.196 Sum_probs=52.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.|.+.|++++|+...|-+.|-++|+.|++++.+.. ++.++-.+.+... +..++.++|+++|..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999985 4777666666632 334788999998887
No 61
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.83 E-value=0.061 Score=46.47 Aligned_cols=68 Identities=6% Similarity=0.089 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE--eeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT--TFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs--~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+.|.+.|++++|+...|-+.|-++|+.|++++-. +..+.+|-.+.+.......++.++|+++|..+-
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999999996 344444433333311223578899999887753
No 62
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.76 E-value=0.074 Score=33.52 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=42.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
|+|.|.+++|.+..+++.|..+++++.+......+ +.....+.++..+ ......+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD--LEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC--HHHHHHHHHHHh
Confidence 46778999999999999999999999999888765 4444455555322 223445555444
No 63
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=95.75 E-value=0.091 Score=45.33 Aligned_cols=66 Identities=8% Similarity=0.172 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+.|.+.|++++|+...|.+.|-+++++|.+.+..+ .++.+.-.+.+... ...+.++|+++|..+=
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p--~~~~~~~L~~~L~~l~ 74 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE--EGLDEDALRAGFAPIA 74 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC--CCCCHHHHHHHHHHHH
Confidence 577999999999999999999999999999999974 33333333344322 2367899999888753
No 64
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.69 E-value=0.092 Score=31.32 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=35.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEe
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLN 176 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve 176 (199)
|.+.|+..+|.+.++++.|...++.+......... +....++.++
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 46788899999999999999999999999987754 3333334444
No 65
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=95.66 E-value=0.089 Score=34.03 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=44.4
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.|...+++|++.+|++.|.+.++.|.+..+...+ +.....+.++. . ..+++.+.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~---~--~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS---P--VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC---C--CCHHHHHHHHc
Confidence 56778899999999999999999999999988764 55555666631 1 35667776654
No 66
>PRK08577 hypothetical protein; Provisional
Probab=95.51 E-value=0.18 Score=38.45 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=48.9
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.+.|.|.+.+++|+|.+|++.|.+++..+.+.+..+.. +.....+.+++.+. ....+++.+.|.+
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-~~~l~~l~~~L~~ 122 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-DIDLEELEEELKK 122 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-hhhHHHHHHHHHc
Confidence 368899999999999999999999999999998887754 43444566664322 1345666666654
No 67
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.45 E-value=0.0078 Score=46.93 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=46.8
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccHHHHHHHHHHHHHHH
Q 042649 27 DFKSKNLTAERRRREKLSNRLLTLRSLVPII--TNMNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--~k~dk~sil~~ai~yi~~L~~~ 79 (199)
.++.-|+..||+|-..+|+.|.+||.++|.. .|.+|..-|.-|..||..|-+-
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhc
Confidence 4667799999999999999999999999964 5888999999999999988643
No 68
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.29 E-value=0.14 Score=33.25 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=41.3
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.+.+++++|.+.++...|.++++.+.+...... ++.....+.++. . ...++.++|.+
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~----~-~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ----P-IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC----C-CCHHHHHHHHc
Confidence 5678899999999999999999999999887763 344443444442 1 45556655553
No 69
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.17 E-value=0.17 Score=32.66 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=41.0
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
|.+.-++++|.|.++++.|.++|+.|.+....... +.....+.++. .+++.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~-------~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED-------IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC-------HHHHHHHHHH
Confidence 45566889999999999999999999888766554 44454555551 6677766654
No 70
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.11 E-value=0.34 Score=33.16 Aligned_cols=60 Identities=22% Similarity=0.182 Sum_probs=42.7
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
+.+.-++++|.|.++++.|.++|+.+.+..+.+.. +...+.|.++.... .+.+++.++|.
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~ 64 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALE 64 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHH
Confidence 44455678999999999999999999999887764 35556777774332 34455555443
No 71
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.2 Score=33.50 Aligned_cols=62 Identities=6% Similarity=0.071 Sum_probs=41.8
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
+.+.-+++||.|.++++.|.++|+.|++...... .+.-...+.+..+..+ ..+.|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 3455588999999999999999999999987765 2333334444432211 256777766543
No 72
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.72 E-value=0.38 Score=31.66 Aligned_cols=60 Identities=13% Similarity=0.318 Sum_probs=41.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-C-eEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-G-ATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~-~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.+.+.+++++|.|.++++.|.++|+.|......... + .-...+.++.. . ..+.+.+.|.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~---~-~~~~~~~~L~~ 64 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ---E-DRERAKEILKE 64 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH---H-HHHHHHHHHHH
Confidence 467888999999999999999999999988766652 2 22334555521 1 45566666554
No 73
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.58 E-value=0.52 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=40.8
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
|.|..++++|.|.+|+..|.+.|+.|.+.-+...++. .++.+.. + +.+.+.+.|.+
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~-~----~~~~~~~~L~~ 59 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV-S----DPDKAKEALKE 59 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE-C----CHHHHHHHHHH
Confidence 5667789999999999999999999999988776663 3444443 1 24555555543
No 74
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.57 E-value=0.74 Score=29.66 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=43.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
.+.+.+.+++|+|.+|+..|.++++.+.+.+.... ++.....+.+... . -..+++...|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD--D-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC--H-HHHHHHHHHHh
Confidence 46778889999999999999999999999988764 3555555666631 1 23444444444
No 75
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.48 E-value=0.44 Score=30.09 Aligned_cols=45 Identities=11% Similarity=0.315 Sum_probs=37.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEe
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLN 176 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve 176 (199)
|.+..++++|.|.++++.|.+.+..|.+..+...+ +..+..+.++
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35677899999999999999999999888887765 6666667666
No 76
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=94.41 E-value=0.16 Score=41.34 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..+.|.+.+++++|+...|-++|.++|..+..++.+..+|.|--++.+.+. ..+..+|..+|...
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~---~~~~~~le~~L~~l 71 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS---WNAITLIESTLPLK 71 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC---hhHHHHHHHHHHhh
Confidence 357789999999999999999999999999999999999977777666532 23667777776543
No 77
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.39 E-value=0.029 Score=51.37 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=46.9
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCC-CC---CCCCcccHHHHHHHHHHHHHHHHHH
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVP-II---TNMNKATIVEDAITYIEKLQMTVKV 82 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP-~~---~k~dk~sil~~ai~yi~~L~~~~~~ 82 (199)
++.+|+.+++.||-|=..||+.|..|--+.- +. ..-.|.-||..|+.-|-.|++||.+
T Consensus 523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4467788999999999999999999966543 11 2345788999999999999999975
No 78
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.06 E-value=0.72 Score=30.40 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=43.2
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.|.+..++++|.|.++++.|.++++.|.+...... ++.....+.++. ...+++.+.|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~-----~~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT-----MNPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec-----CCHHHHHHHHHH
Confidence 46777889999999999999999999998865543 345555666663 124477776654
No 79
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=93.86 E-value=0.034 Score=47.17 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=47.7
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHH
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~ 79 (199)
....+.+-+..||+|--.+|+-|+.||.++|.. .|+.|+..|.-|-+||..|++-
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 355677888999999999999999999999943 4889999999999999988754
No 80
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=93.79 E-value=0.16 Score=36.30 Aligned_cols=68 Identities=16% Similarity=0.206 Sum_probs=55.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
.+.|.|...+++|+...|..+|-++|.++++.+=+...|.+--.+.+.. +....+...+++.|.....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~-~~~~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI-SKEVVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC-ChHhccHHHHHHHHHHHHH
Confidence 3678888899999999999999999999999999999998777776662 3345677777777766554
No 81
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=93.78 E-value=0.05 Score=51.66 Aligned_cols=50 Identities=30% Similarity=0.457 Sum_probs=42.9
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC----CCCCcccHHHHHHHHHHH
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPII----TNMNKATIVEDAITYIEK 75 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~----~k~dk~sil~~ai~yi~~ 75 (199)
+.++++-.-+-|-||.|-|+-|+.|..+||-. +..|||+|+.=||.|++-
T Consensus 44 ~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 44 ELRKEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred HHHhhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 44567777888999999999999999999933 478999999999999863
No 82
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.67 E-value=0.81 Score=32.62 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=39.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEecc
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGV 178 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~ 178 (199)
..|-+..++++|.|.+++..|..+|+.+.+..+-+..+. --|.|.++.+
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie 64 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD 64 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 445556688899999999999999999999999987543 3466777754
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=93.54 E-value=0.84 Score=41.05 Aligned_cols=49 Identities=4% Similarity=0.144 Sum_probs=41.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEec
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-----KGATLISSCLNG 177 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-----~~~v~~t~~ve~ 177 (199)
.+.|.|.+.+++|+|.+|+..|.+.++.|.+.++.+. ++.....+++++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V 379 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET 379 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe
Confidence 4889999999999999999999999999999998765 455555666765
No 84
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=93.21 E-value=0.82 Score=31.01 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=36.4
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEecc
Q 042649 134 IISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGV 178 (199)
Q Consensus 134 I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~ 178 (199)
+..++++|.|.++++.+...|+.+.+..+-+..+. .-|.|.++..
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 34467899999999999999999999999987653 3466777743
No 85
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=92.98 E-value=0.13 Score=33.74 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=41.5
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
|-+.+.+++|++.+++..|.+.+..+...+....++.....+.++.. ..+++.++|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 34577899999999999999999999887666555655555555532 45566665553
No 86
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=92.25 E-value=0.24 Score=41.79 Aligned_cols=54 Identities=26% Similarity=0.248 Sum_probs=46.5
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCCC---CCCcccHHHHHHHHHHHHHHHH
Q 042649 27 DFKSKNLTAERRRREKLSNRLLTLRSLVPIIT---NMNKATIVEDAITYIEKLQMTV 80 (199)
Q Consensus 27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~---k~dk~sil~~ai~yi~~L~~~~ 80 (199)
..+..-+..||+|-..+|..|+.||..||... |.+|-.-|.-|-.||--|-..+
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 56677889999999999999999999999764 7778888999999998876654
No 87
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=92.17 E-value=1.2 Score=38.21 Aligned_cols=66 Identities=11% Similarity=0.226 Sum_probs=51.4
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.+.+.++|++++|+...|-..|-++|..|++++--+. ++++|--..... ++...+.+.+.+.+..+
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~~~~~l~~~f~~~ 74 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPLDREALRAAFAPL 74 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcccHHHHHHHHHHH
Confidence 5778999999999999999999999999999987752 456665555552 33447788888877653
No 88
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.61 E-value=0.89 Score=29.86 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=41.5
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 133 RIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 133 ~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
-+..++++|.+.++.+.|.++|+.+.+..+.. .++.....+.++. ....++.+.|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~-----~~~~~~~~~l~~ 61 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE-----PVPDEVLEELRA 61 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC-----CCCHHHHHHHHc
Confidence 35678899999999999999999998887765 3566666666663 123455555543
No 89
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.56 E-value=1.8 Score=35.14 Aligned_cols=64 Identities=14% Similarity=0.275 Sum_probs=49.5
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC------eEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG------ATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~------~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
+.|.+...++||++.++-+.|-++|+.|.+.+.-+.+. .+...+.+....+ ...++|+++|..+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l 165 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKAL 165 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHH
Confidence 67888889999999999999999999999998887653 3333455554333 5688888887764
No 90
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=1.2 Score=43.60 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=54.8
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+...|.|.|+++|.+|..+..++...|++|+.|.+-+ .+|..+.||.|.-.+|..+..+ .+...|.+++
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l 755 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEAL 755 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999987 5677999998886666555533 3334444443
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=91.24 E-value=1.1 Score=35.26 Aligned_cols=63 Identities=11% Similarity=0.274 Sum_probs=48.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.|.|.-++++|.|.+|...|...|+.+.+..+...+ +....++++.. +.-..++|..-|.+.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence 466777899999999999999999999999999875 45556667763 3345667776666543
No 92
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.16 E-value=1.6 Score=42.22 Aligned_cols=67 Identities=7% Similarity=0.131 Sum_probs=58.2
Q ss_pred EEEEEEe-cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 130 LWIRIIS-KKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 130 ~~I~I~c-~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
..+.|.. ++++|+++.+.-.|--+++.|.+|++.+ +|..+..|.|....|....+..+.|.+..++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 4455554 9999999999999999999999999999 88888889999877888999999999887654
No 93
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=91.02 E-value=1.5 Score=45.95 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=58.6
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEeccCCcccCHHHHHHHHHHHHhc
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-----GATLISSCLNGVYSYKIEAEQVKELLQEIIKS 198 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-----~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~~ 198 (199)
+.+.++|.....+..|++++-.|+++||.|+...-.... ...+|.|.+....+.....+++++.+.++|..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHH
Confidence 468999999889999999999999999999998765533 25678899997777778888888888887753
No 94
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=90.98 E-value=1.5 Score=35.18 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=48.4
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
.|.+.-.++||+|..|...|...|+.|.+.++.. ..+.--.++.+. +++.. .++|.+.|.+.+.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--GDDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--CCHHH-HHHHHHHHHHHhH
Confidence 4777788999999999999999999999999987 344444445554 22223 7888888887653
No 95
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=90.88 E-value=2.7 Score=29.01 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=46.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.|.|.-.++||.|..++..+.--|+.|.+.++... ++..-.++++. +.-..++|..-|.+.
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~----~~~~i~ql~kQL~KL 67 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA----SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC----CCchHHHHHHHHhcC
Confidence 46677788999999999999999999999999984 44444555653 345667776666543
No 96
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=90.82 E-value=1.1 Score=31.59 Aligned_cols=63 Identities=8% Similarity=0.145 Sum_probs=45.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE--EEEEEeccCCcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATL--ISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~--~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.|.+.-.+++|+|..|...|...|+.|.+.++....+.-+ .++++. .++.-..++|.+-|.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQDDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CCCHHHHHHHHHHHhCC
Confidence 4667778899999999999999999999999998655333 445554 23445566666666543
No 97
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=90.71 E-value=0.25 Score=44.59 Aligned_cols=43 Identities=30% Similarity=0.536 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCC----CCCCcccHHHHHHHHHHH
Q 042649 33 LTAERRRREKLSNRLLTLRSLVPII----TNMNKATIVEDAITYIEK 75 (199)
Q Consensus 33 ~~~Er~RR~~~~~~~~~LrslvP~~----~k~dk~sil~~ai~yi~~ 75 (199)
.-+-|.||++-|--|..|..++|-. +..||++|+.=|..|||-
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3467999999999999999999954 379999999999999974
No 98
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.51 E-value=2.4 Score=28.94 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=40.2
Q ss_pred ecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 136 SKKKRSRITKFLEAMASHGFELSDTNVTTFKG-ATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 136 c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~-~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
-++++|.|.+++..++..|+.+.+..+-+..+ ..-|.|.++.++. .+.++++|..
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~----~~~i~~~l~~ 62 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD----QRRLDELVQL 62 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC----HHHHHHHHHH
Confidence 36789999999999999999999999998644 3456677774332 2355555543
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=90.46 E-value=1.8 Score=34.30 Aligned_cols=62 Identities=11% Similarity=0.287 Sum_probs=46.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.|.|.-++++|.|.+|...|...|+.|.+..+.... +....++++.. +.-..+++..-|.+.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~~~~i~qi~kQl~KL 67 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---DEQVIEQITKQLNKL 67 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcc
Confidence 466777899999999999999999999999988765 45556666663 334556666555543
No 100
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=90.14 E-value=1.8 Score=28.54 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
+++|.|..|+..+.--|+.|.+.++.. .++..-.++.+.. +.-..+.|..-|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~---~~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG---DDREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES----CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee---CchhHHHHHHHHhcc
Confidence 469999999999999999999999998 5566666666663 234666666666543
No 101
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.86 E-value=0.29 Score=45.61 Aligned_cols=39 Identities=26% Similarity=0.592 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCC----CCCCcccHHHHHHHHHH
Q 042649 36 ERRRREKLSNRLLTLRSLVPII----TNMNKATIVEDAITYIE 74 (199)
Q Consensus 36 Er~RR~~~~~~~~~LrslvP~~----~k~dk~sil~~ai~yi~ 74 (199)
-++-|+++|.-++.|.+|+|.. +|.||.|||.=++.|+.
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3566889999999999999965 59999999999999975
No 102
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=89.81 E-value=3.1 Score=40.33 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=46.8
Q ss_pred cEEEEEecC----ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEecc
Q 042649 119 KVEVTNVDG----CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG-ATLISSCLNGV 178 (199)
Q Consensus 119 ~V~V~~~~~----~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~-~v~~t~~ve~~ 178 (199)
-|.|.+-.+ -.+.|.|.+.+++|+|.+|..+|-+.++.|.++++.+.++ .+...|.+++.
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 676 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTAR 676 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEEC
Confidence 366777322 1468889999999999999999999999999999877654 44555777753
No 103
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=89.58 E-value=2.7 Score=32.34 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=52.8
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE-eeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT-TFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs-~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+..+.+.+.-.++.|.|+++++++-..++.|++.+=+ +.+|+.-.|+.+.. .+-..+.++|..+|..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~-ssm~~~V~~ii~kl~k 137 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT-SSMEKDVDKIIEKLRK 137 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc-hhhhhhHHHHHHHHhc
Confidence 4567888888999999999999999999999998876 57888887877763 2334566777776654
No 104
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=89.01 E-value=3.7 Score=40.06 Aligned_cols=60 Identities=8% Similarity=0.100 Sum_probs=47.2
Q ss_pred cEEEEEecC----ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEecc
Q 042649 119 KVEVTNVDG----CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGV 178 (199)
Q Consensus 119 ~V~V~~~~~----~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~ 178 (199)
-|.|.+-.. -.+.|.|.+.+++|+|.+|..+|.+.++.|.++++.+. ++.+...|.+++.
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~ 717 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIY 717 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEEC
Confidence 367777321 24688899999999999999999999999999999875 4555556777753
No 105
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=89.01 E-value=2.5 Score=29.28 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=43.9
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
..|.+.-.++||+|..+...+.--|+.|.+.++...+ +..-.++++.. +.-..++|..-|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~---~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC---TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC---CHHHHHHHHHHHhC
Confidence 3567777899999999999999999999999988654 44444555552 33344555554443
No 106
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.84 E-value=2.8 Score=27.66 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=38.7
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 133 RIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 133 ~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.+.=+.+||-|.++++.|.+ +.+|+..+....+ +.....+.++.. +.-..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~--~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP--DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC--CHHHHHHHHHHHHH
Confidence 34557899999999999999 9999998887643 222223344532 22344566666553
No 107
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=88.25 E-value=4.4 Score=39.21 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=47.3
Q ss_pred cEEEEEecC----ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEecc
Q 042649 119 KVEVTNVDG----CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGV 178 (199)
Q Consensus 119 ~V~V~~~~~----~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~ 178 (199)
-|.|.+-.. -.+.|.|.+.+++|+|.+|+.+|-+.+..|.++++.... +.+...|.+++.
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~ 660 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIK 660 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEEC
Confidence 366766321 246888999999999999999999999999999998874 555556777753
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.08 E-value=4.6 Score=30.06 Aligned_cols=48 Identities=6% Similarity=0.034 Sum_probs=37.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEecc
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGV 178 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~ 178 (199)
.+-+..++++|.|.++|..|..+|+.+.+..+-+..+. .-|.|.++++
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 34444477899999999999999999999999987443 3356666643
No 109
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=85.91 E-value=6.9 Score=24.91 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..++++.+++++|.+.++.|.-.+.+..+ .-.+|.+.- -..+++.++|++.|
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~-----~~~~~~~~~lh~~~ 64 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE-----DDATKALRAVHERF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 46899999999999999999777654433 333344442 13455566666554
No 110
>PRK11899 prephenate dehydratase; Provisional
Probab=82.91 E-value=12 Score=32.26 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
..|-+..+++||.|.++|+.|...|+.+....+-+..+. .-|.|.++.++. ..-..++++|.+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~ 258 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH--PEDRNVALALEE 258 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHH
Confidence 334444478999999999999999999999999998654 456777775432 333456666655
No 111
>PRK08198 threonine dehydratase; Provisional
Probab=82.71 E-value=9.4 Score=34.18 Aligned_cols=66 Identities=20% Similarity=0.290 Sum_probs=48.5
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-----KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-----~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+..+.+.|.=+++||.|.++++.|-+.|..|+..+.... .+.....+.++.. +.-..++|.++|.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~--~~~~~~~l~~~L~~ 395 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR--GPEHIEEILDALRD 395 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC--CHHHHHHHHHHHHH
Confidence 456788888899999999999999999999999988753 3455566667742 11145566666654
No 112
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.04 E-value=9 Score=33.97 Aligned_cols=66 Identities=15% Similarity=0.280 Sum_probs=47.2
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-----CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-----KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-----~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+..+.+.|.=+++||.|.++++.+.+.+.+|++...... .+....++.++..+ .-..++|.++|.+
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 356688888899999999999999999999999977632 24555556666321 2334566666654
No 113
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=81.61 E-value=12 Score=28.45 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=36.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEE
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISS 173 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~ 173 (199)
.|.+.-.+++|-|..++.+|.+.|+.+...++.-.+++-+.-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRm 47 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRM 47 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEE
Confidence 4677889999999999999999999999999988777554433
No 114
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=80.51 E-value=11 Score=23.25 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=29.7
Q ss_pred EEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEe
Q 042649 132 IRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLN 176 (199)
Q Consensus 132 I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve 176 (199)
|.|.+. ..++.+.+++++|.+.++.+.....+..+ .-.+|.+.
T Consensus 3 i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~--~~i~~~v~ 48 (65)
T cd04892 3 VSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSE--VNISFVVD 48 (65)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCc--eeEEEEEe
Confidence 445433 46789999999999999999887765422 33345554
No 115
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.28 E-value=14 Score=25.45 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=37.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
++.+.=+++||-|.+++++|- +.+|......... +.....+.++..++ .-..+++.++|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 467777899999999999998 6777766666533 33333344453220 2234555555543
No 116
>PRK06382 threonine dehydratase; Provisional
Probab=78.77 E-value=13 Score=33.35 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=46.2
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEE----ee-CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVT----TF-KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs----~~-~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
..+.+.|.=+++||.|.+|++.|.+++.+|++.... .. .+....++.++.. +.-..++|.+.|.+
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~--~~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR--GQDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC--CHHHHHHHHHHHHH
Confidence 456788888999999999999999999999988775 22 3455556666632 11233466666654
No 117
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=78.31 E-value=16 Score=26.44 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=44.2
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
...|.+.-.+++|+|..|...|..-|+.|.+.++...++.-+.-+++-+. + .-..++|.+-|.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~-~~~i~Qi~kQL~K 71 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-D-DQRLEQMISQIEK 71 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-C-chHHHHHHHHHhC
Confidence 45678888899999999999999999999999888766543333333222 2 2355555555544
No 118
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.64 E-value=12 Score=24.27 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+.+|++.+++++|.+.++.|.-.+.++.+-.+... +.. -..+...++|++.|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~--v~~-----~~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLI--VND-----SEAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEE--EeH-----HHHHHHHHHHHHHH
Confidence 45789999999999999999877776665544332 331 13345555665543
No 119
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=76.71 E-value=29 Score=29.02 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=45.0
Q ss_pred ceEEEEEEecCCCC--HHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRS--RITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 128 ~~~~I~I~c~~~~g--ll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
..+.+.|.|...++ +...+++.|++.++.+.+.++... ++.+..++.+.....+....+++...|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHh
Confidence 35788999988665 578899999999999999999765 3444444443322223446666666554
No 120
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=76.57 E-value=0.59 Score=44.72 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=56.2
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT-----NMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~-----k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.++...|+.+|.+||..++-.|..|.++.-+.. |+.+..-+..++.||..++.....+.++...+..
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~ 720 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRK 720 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhh
Confidence 478889999999999999999999999987653 6777778999999999998888777777655443
No 121
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.48 E-value=17 Score=23.15 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..+|.+.+++++|.+.+++|.-...+..+. -..|.+.. -..+.+.+.|++.|
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~--~isf~v~~-----~~~~~a~~~lh~~~ 64 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEI--NISCVIDE-----KDAVKALNIIHTNL 64 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeH-----HHHHHHHHHHHHHH
Confidence 468999999999999999997666555332 22334441 12344555555543
No 122
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=75.32 E-value=19 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHhCCCeEE
Q 042649 138 KKRSRITKFLEAMASHGFELS 158 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv 158 (199)
..+|++.+++++|.+.++.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 579999999999999999996
No 123
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.03 E-value=19 Score=22.69 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..++.+.+++.+|.+.+++|.-.+.+..+ .-.+|.+.- -..++..++|++.|
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~-----~d~~~~~~~lh~~~ 64 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN-----EDADKAVKAIYEEF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 46899999999999999999776654433 223344442 13455566666554
No 124
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=73.78 E-value=15 Score=24.14 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 139 KRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 139 ~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+|++.+++++|.+.+++|.-.+.+..+-.+.. .+.. -..++..++|++.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~--~V~~-----~~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQF--VVDR-----DDYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEE--EEEH-----HHHHHHHHHHHHHH
Confidence 578999999999999999977777665443332 2221 14556666666544
No 125
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=72.05 E-value=13 Score=36.13 Aligned_cols=59 Identities=10% Similarity=0.072 Sum_probs=45.1
Q ss_pred cEEEEEecC----ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE-EEEEEec
Q 042649 119 KVEVTNVDG----CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATL-ISSCLNG 177 (199)
Q Consensus 119 ~V~V~~~~~----~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~-~t~~ve~ 177 (199)
-|.|.+-.. -.+.|.|...+++|+|.+|+++|-+.+..|.+++....++.+. ..|.+++
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v 676 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV 676 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE
Confidence 456655332 2467888999999999999999999999999999999744443 3455664
No 126
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.99 E-value=22 Score=22.39 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..++.+.+++++|.+.++.|.-.+.+..+. -.+|.+.. -..+++.+.|++.|
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~--~isf~i~~-----~~~~~~~~~Lh~~~ 64 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSEY--NISFVVAE-----DDGWAAVKAVHDEF 64 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccc--eEEEEEeH-----HHHHHHHHHHHHHh
Confidence 458899999999999999996665544332 23344442 13455666666654
No 127
>PRK08526 threonine dehydratase; Provisional
Probab=70.99 E-value=30 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=47.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-----EEEEEEEeccCCcccCHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-----TLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-----v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
+..+.+.+.-+++||.|.+++..+-+.+.+|+.......... +...+.++.. +.-..++|.++|.
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~--~~~~~~~~~~~l~ 393 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK--GKEHQEEIRKILT 393 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC--CHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999764433 4444555532 2224455555554
No 128
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=70.68 E-value=32 Score=29.72 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=45.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGAT-LISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v-~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.|-+.-+++||.|.++|..|...|++.....+-+..+.. -|.|.++.++. ..-..++++|.+
T Consensus 196 sl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~--~~~~~v~~AL~e 258 (279)
T COG0077 196 SLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH--IDDPLVKEALEE 258 (279)
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC--cCcHhHHHHHHH
Confidence 344444589999999999999999999999999876544 46677775433 333666666665
No 129
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=70.18 E-value=31 Score=31.03 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=43.6
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 134 IISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 134 I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.-+++||.|.++|+.|...|+......+-+..+. .-|.|.++.++. ..-..+.++|..
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~--~~d~~~~~aL~~ 361 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN--LRSAEMQKALKE 361 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC--CCCHHHHHHHHH
Confidence 33368999999999999999999999999987664 456777875432 333455555554
No 130
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=70.16 E-value=21 Score=21.38 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 139 KRSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 139 ~~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
.+|.+.+++++|.+.++.|.....+..
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~ 39 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSES 39 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 578999999999999999987766543
No 131
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=69.81 E-value=30 Score=27.35 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=41.4
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEec
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLNG 177 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve~ 177 (199)
+.+.|.-+++||.|+.+++-|-+.|..|++...+.. ++++-.-+++++
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~ 56 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEG 56 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEe
Confidence 455677789999999999999999999999999987 888877777774
No 132
>PRK11898 prephenate dehydratase; Provisional
Probab=68.71 E-value=32 Score=29.48 Aligned_cols=62 Identities=16% Similarity=0.076 Sum_probs=42.1
Q ss_pred EEEEEEecC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHH
Q 042649 130 LWIRIISKK-KRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 130 ~~I~I~c~~-~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
..|-+..+. ++|.|.++|..|...|+.+++..+-+..+. .-|.|.++.... .+...+.++|.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~--~~~~~~~~al~ 260 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH--IDDVLVAEALK 260 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc--CCCHHHHHHHH
Confidence 444455555 499999999999999999999999986543 335566664322 23334555444
No 133
>PLN02705 beta-amylase
Probab=65.95 E-value=8.2 Score=36.83 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHHHHhcc
Q 042649 21 VYGDDRDFKSKNLTAERRRREKLSNRLLTLRSL 53 (199)
Q Consensus 21 ~~~~~~~~~~~h~~~Er~RR~~~~~~~~~Lrsl 53 (199)
++.+....+++....||+||.--...|.-||..
T Consensus 77 ~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 77 GKREREKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 334456678889999999997777777777654
No 134
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=65.79 E-value=11 Score=36.50 Aligned_cols=59 Identities=10% Similarity=0.220 Sum_probs=49.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..++|...+++|+|..|+.+|. +|..+.++|.|..++..|.+. ..+.-..|.+++..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~----~~~~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK----PGFDRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec----CcccHHHHHHHHHHHH
Confidence 4688999999999999999999 999999999999999999887 2245666777776654
No 135
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=63.08 E-value=50 Score=23.19 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
..+.|.-..+|+.|..|+.+.+--|+.|...+.+.. ++..-.-+++. ..-+.+-|..-|.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~----s~R~~~lL~~QLeK 66 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD----SDRSVDLLTSQLEK 66 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc----CCCChHHHHHHHHH
Confidence 345566678899999999999999999999999986 55555556666 23455555554444
No 136
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=62.18 E-value=14 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=26.3
Q ss_pred eEEEEEEec----CCCCHHHHHHHHHHhCCCeEEEEE
Q 042649 129 KLWIRIISK----KKRSRITKFLEAMASHGFELSDTN 161 (199)
Q Consensus 129 ~~~I~I~c~----~~~gll~~Il~aLeel~L~Vv~a~ 161 (199)
-..|+|.++ ..+|++.++..+|-+.|+.|...+
T Consensus 6 ~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 6 WAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 345666666 379999999999999999998877
No 137
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.40 E-value=39 Score=20.80 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
..++.+.+++++|.+.++.|...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4588999999999999999977764
No 138
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=58.73 E-value=12 Score=29.18 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCCccccccccHHHHHHHHHHHHHHHHHhcc
Q 042649 23 GDDRDFKSKNLTAERRRREKLSNRLLTLRSL 53 (199)
Q Consensus 23 ~~~~~~~~~h~~~Er~RR~~~~~~~~~Lrsl 53 (199)
..+...+++....||+||.--...|.-||..
T Consensus 6 ~pt~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 6 RPTWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred cccHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677788889999997777788888874
No 139
>PRK00907 hypothetical protein; Provisional
Probab=58.56 E-value=45 Score=23.87 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=42.0
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCC----eEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGF----ELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L----~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+++-|+|-...++++...|++.++.+.- .-+...-|..|..+-.++.+... ..-..+.|+++|.+
T Consensus 16 c~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at--s~eQld~iY~~L~~ 84 (92)
T PRK00907 16 GTFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE--SREQYDAAHQALRD 84 (92)
T ss_pred CCCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC--CHHHHHHHHHHHhh
Confidence 3577777778889999999999998743 33344445556655566665532 22345566666653
No 140
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.48 E-value=54 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.194 Sum_probs=22.6
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
+..+|.+.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45699999999999999999888754
No 141
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=58.42 E-value=6.3 Score=30.99 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC
Q 042649 35 AERRRREKLSNRLLTLRSLVPIIT 58 (199)
Q Consensus 35 ~Er~RR~~~~~~~~~LrslvP~~~ 58 (199)
.||.|-.++++.|.-|+.|+|...
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 589999999999999999999754
No 142
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=57.28 E-value=53 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEe
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLN 176 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve 176 (199)
..++.+.+++++|.+.++.+.-.+.+..+. -.+|.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~--~isf~v~ 49 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSEH--SISFVVD 49 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCcc--eEEEEEe
Confidence 467899999999999999997776654333 2334444
No 143
>PRK14646 hypothetical protein; Provisional
Probab=56.86 E-value=93 Score=24.29 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHH
Q 042649 145 KFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQV 188 (199)
Q Consensus 145 ~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~l 188 (199)
-+-..++++|++++.+.+...++.-+..+.+...+|..++.++.
T Consensus 12 li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC 55 (155)
T PRK14646 12 LLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDC 55 (155)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHH
Confidence 44456789999999999999877665566666444445776654
No 144
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=56.36 E-value=54 Score=30.40 Aligned_cols=48 Identities=10% Similarity=0.065 Sum_probs=37.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeE-E-EEEEEec
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGAT-L-ISSCLNG 177 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v-~-~t~~ve~ 177 (199)
..|-++.++.+|.|.++|+.|+.+|+.+.+..+-+..+.. - +.|.++.
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 4444555778999999999999999999999999875443 2 4566664
No 145
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=55.34 E-value=50 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
..+|...+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4588999999999999999998854
No 146
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=55.24 E-value=15 Score=21.03 Aligned_cols=18 Identities=50% Similarity=0.735 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 042649 35 AERRRREKLSNRLLTLRS 52 (199)
Q Consensus 35 ~Er~RR~~~~~~~~~Lrs 52 (199)
.=|+||+.++.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347889999999999875
No 147
>PLN02317 arogenate dehydratase
Probab=54.25 E-value=98 Score=27.98 Aligned_cols=32 Identities=13% Similarity=0.132 Sum_probs=28.6
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNVTTFKGA 168 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~ 168 (199)
+.++|.|.++|.+|...++.+.+..+-+..+.
T Consensus 291 ~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 291 EEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred CCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 56899999999999999999999999886544
No 148
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=54.05 E-value=14 Score=29.63 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
-+.|.....++||+...|.++.-+.|-.++.+.++.+|+.+..++-+.+.. -....|++.|.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~---dav~~le~~l~ 66 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSW---DAVTLLEATLP 66 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCH---HHHHHHHHHhh
Confidence 367788889999999999999999999999999999999887776666311 23445555543
No 149
>PRK14637 hypothetical protein; Provisional
Probab=53.28 E-value=1.1e+02 Score=23.89 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+.-|....+-.+++++|++++...+...++.-+..+.+...+| ++.+ ++.++|..+|
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~iddC~~vSr~Is~~L 65 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VGLDDCARVHRILVPRL 65 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHh
Confidence 3457777888889999999999999998776555555554444 6665 4444544443
No 150
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.22 E-value=30 Score=23.63 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+..||+-|.-||-.+++|+++...+.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999999987543
No 151
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=51.62 E-value=81 Score=29.01 Aligned_cols=48 Identities=10% Similarity=0.038 Sum_probs=36.5
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEecc
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGV 178 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~ 178 (199)
.|-++-++++|.|.++|..+..+|+.+.+..+-+..+. --+.|.++.+
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe
Confidence 34444477899999999999999999999999986433 3355666643
No 152
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=51.32 E-value=66 Score=21.81 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 139 KRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 139 ~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
..|.-..|+++|..+++.++.- .++.+.+-|.+.... -....+..+|.+.++
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~-----k~~~r~~~~Le~~~p 65 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSL-----KTIKRLTEDLENRFP 65 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCH-----HHHHHHHHHHHHhCc
Confidence 3678899999999999999988 666777777766541 144556666655543
No 153
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.03 E-value=35 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+..||+-|.-||.++++|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999866544
No 154
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=50.83 E-value=65 Score=25.86 Aligned_cols=66 Identities=8% Similarity=0.281 Sum_probs=45.6
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--C---CeEEEE-EEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--K---GATLIS-SCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~---~~v~~t-~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..+.+.+...++||++-++.+.|..+|+.+.+....+. . ...||. +.+... -..+...|.+.+.++
T Consensus 91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lP--a~~~i~~l~~~f~al 162 (176)
T COG2716 91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLP--ANLSISALRDAFEAL 162 (176)
T ss_pred ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCC--CcCcHHHHHHHHHHH
Confidence 45778888899999999999999999988877766653 2 223332 233322 236777787777653
No 155
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=50.39 E-value=65 Score=25.58 Aligned_cols=63 Identities=13% Similarity=0.289 Sum_probs=46.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE--EEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLI--SSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~--t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
+.+.-.+.+|.|..+...+-..|+.+-+..+...++--+. |+.+.+ +.-..+++..-|+..+.
T Consensus 7 lsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g---~~~~~EQi~kQL~kLid 71 (163)
T COG0440 7 LSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG---DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC---CcchHHHHHHHHHhhcc
Confidence 4444567899999999999999999999999875443333 344442 44678888888887664
No 156
>PRK08639 threonine dehydratase; Validated
Probab=50.04 E-value=1e+02 Score=27.81 Aligned_cols=66 Identities=8% Similarity=0.091 Sum_probs=41.9
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG--ATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~--~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
++.+.+++.=+++||.|.++++.+-+.+.+|+..+.-...+ .-...+.++..+ .-..+++.++|.+
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~--~~h~~~i~~~L~~ 401 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKD--AEDYDGLIERMEA 401 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 46788999999999999999996666655888877664222 112223445321 1234566666654
No 157
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=49.82 E-value=77 Score=21.32 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=33.0
Q ss_pred ccEEEEEecCceEEEEEEecCCC------CHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKR------SRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~------gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
..|.+.. .++.+.|.|.+.... .-+..+-++|...|+.+.+.++...
T Consensus 27 v~v~l~~-~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRL-QGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEE-ETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEE-eCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 4566654 456899999998642 2367899999999999998887753
No 158
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=49.16 E-value=89 Score=25.22 Aligned_cols=59 Identities=20% Similarity=0.234 Sum_probs=42.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC--eEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG--ATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~--~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
-++|...+++|.|.++.-.+-++|..++.++--.-++ .-+.++.++.. -+.+.|...|.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi----~d~e~l~~~lk 64 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI----DDFEKLLERLK 64 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC----CCHHHHHHHhh
Confidence 4677888999999999999999999999998776544 44444555522 14455555443
No 159
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=48.36 E-value=47 Score=23.18 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEEEe---eCCeEEEE-------------EEEeccCCcccCHHHHHHHHHHH
Q 042649 142 RITKFLEAMASHGFELSDTNVTT---FKGATLIS-------------SCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 142 ll~~Il~aLeel~L~Vv~a~vs~---~~~~v~~t-------------~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
-|++|-++|++.|.+|+...--. .-+.++++ +.+-+.+=...|+++|.+.|.+-
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~r 78 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEER 78 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHh
Confidence 47899999999999999876443 22222222 00011111347889999888753
No 160
>PRK06349 homoserine dehydrogenase; Provisional
Probab=47.59 E-value=1.3e+02 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=31.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT 164 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~ 164 (199)
.++|++.-.+++|.|.+|-..|.++++.+.+.....
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 689999999999999999999999999888765443
No 161
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=45.98 E-value=87 Score=20.76 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEE
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTN 161 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~ 161 (199)
...+|++.+++++|.+.++.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 3468999999999999999997775
No 162
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=45.27 E-value=30 Score=21.57 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 042649 73 IEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~~~ 93 (199)
|..|++++..|+.+.+.|.++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~ 21 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAA 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 567888999998888877754
No 163
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=45.15 E-value=1.5e+02 Score=26.80 Aligned_cols=65 Identities=11% Similarity=0.066 Sum_probs=42.7
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee-C-CeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF-K-GATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~-~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
+..+.+++.=+++||-|.++++.+-+.+.+|+..+.-.. + +.....+.++..+ .-..+++.++|.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~--~~h~~~i~~~L~ 389 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND--KEDFAGLLERMA 389 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC--HHHHHHHHHHHH
Confidence 467789999999999999999977777779998887742 2 2233334555322 123345555554
No 164
>PRK14634 hypothetical protein; Provisional
Probab=44.81 E-value=1.1e+02 Score=23.91 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHH---HHHHHHH
Q 042649 148 EAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQV---KELLQEI 195 (199)
Q Consensus 148 ~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~l---k~~L~~~ 195 (199)
..++++|++++.+.+...++.-+..+.+...+|+.++.++. .++|..+
T Consensus 15 ~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~ 65 (155)
T PRK14634 15 ATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEA 65 (155)
T ss_pred HHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHH
Confidence 34679999999999998766555555566555655777654 4444443
No 165
>PRK14639 hypothetical protein; Provisional
Probab=42.96 E-value=1.3e+02 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=34.0
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 146 FLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 146 Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+-..++++|++++...+...++.-+..+.+...+| ++.+ .+.++|..+|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~iddC~~vSr~is~~L 54 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNLDDCERLSELLSPIF 54 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHHh
Confidence 34578899999999999998876666666664444 6665 4445555444
No 166
>PRK03094 hypothetical protein; Provisional
Probab=42.70 E-value=53 Score=22.97 Aligned_cols=52 Identities=12% Similarity=0.267 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEEE---eeCCeEEEE----------------EEEeccCCcccCHHHHHHHHHHHH
Q 042649 142 RITKFLEAMASHGFELSDTNVT---TFKGATLIS----------------SCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 142 ll~~Il~aLeel~L~Vv~a~vs---~~~~~v~~t----------------~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
-|++|-++|++.|.+|+....- ..-|.++++ ..+. + ...++++|.+.|.+-+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~-A--~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT-A--SGLTADEICQQVESRL 79 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEE-c--CCCCHHHHHHHHHHhh
Confidence 4789999999999999876531 112222222 1222 2 3479999999887543
No 167
>PRK14645 hypothetical protein; Provisional
Probab=42.59 E-value=1.4e+02 Score=23.29 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHH---HHHHHHHHH
Q 042649 145 KFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQ---VKELLQEII 196 (199)
Q Consensus 145 ~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~---lk~~L~~~i 196 (199)
-+-..++++|++++.+.+...++.-+..+.+...++..++.++ +.++|..+|
T Consensus 14 li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~L 68 (154)
T PRK14645 14 LAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAEL 68 (154)
T ss_pred HHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHh
Confidence 3445668999999999999877655555555533344576654 445555444
No 168
>smart00338 BRLZ basic region leucin zipper.
Probab=42.47 E-value=38 Score=22.05 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
-.|+..|+.+++.|+.+...|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888888888888887776654
No 169
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=41.29 E-value=69 Score=20.05 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 65 IVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 65 il~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.-..+-++|+.|..++..+.++++.++.
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999999999988764
No 170
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=41.10 E-value=57 Score=22.74 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+..||+-|.-||-.+++|+.+...+.
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999987654
No 171
>PRK06291 aspartate kinase; Provisional
Probab=40.85 E-value=1.9e+02 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=30.8
Q ss_pred CceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 042649 127 GCKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFK 166 (199)
Q Consensus 127 ~~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~ 166 (199)
.+-..|.|.+. ..+|.+.+++++|.+.++.|.-.+.++..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse 361 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE 361 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 34567888765 46889999999999999999877654444
No 172
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=40.77 E-value=2.3e+02 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=29.6
Q ss_pred CceEEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEE
Q 042649 127 GCKLWIRIIS---KKKRSRITKFLEAMASHGFELSDTNVT 163 (199)
Q Consensus 127 ~~~~~I~I~c---~~~~gll~~Il~aLeel~L~Vv~a~vs 163 (199)
.+-..|.|.. ...+|.+.+++.+|.+.++.|...+.+
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 4466788873 456899999999999999999876654
No 173
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=40.02 E-value=88 Score=19.12 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
..++.+.+++++|.+.++.|.-.+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4589999999999999999977764
No 174
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=39.87 E-value=9.6 Score=36.85 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=49.4
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC-----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPII-----TNMNKATIVEDAITYIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~-----~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 88 (199)
.-....|+.++|++|-...++|..|.+|.|.. .+..+++||. +.|+.+++.-+.+.+...
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 34566799999999999999999999999944 3678899998 788888888777776554
No 175
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=39.12 E-value=33 Score=23.71 Aligned_cols=59 Identities=10% Similarity=0.213 Sum_probs=40.3
Q ss_pred EEecC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeE---------EEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 134 IISKK-KRSRITKFLEAMASHGFELSDTNVTTFKGAT---------LISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 134 I~c~~-~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v---------~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
+...+ ..|.+..|-+.|-++|+.|.+.+-. .+++ .+++.+.+. +...+.+.++.+|.++
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l--~~~~~~~~~~~~~~~~~e~~v~-~~~~~~~~lr~~L~~l 72 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRL--SGRVPLEEQDDSPKACVEFSVR-GQPADLEALRAALLEL 72 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHh--hccccccccCCCCcEEEEEEEe-CCCCCHHHHHHHHHHH
Confidence 33355 7899999999999999998776653 2222 334444432 3336889999998864
No 176
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.20 E-value=89 Score=18.67 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=28.2
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEe
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLN 176 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve 176 (199)
++.+|.+.+++++|.+.++.+...+.+... +..-.+|.+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 556899999999999999999776664322 2233445444
No 177
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=37.90 E-value=52 Score=21.35 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~ 91 (199)
-.||..|+.++..|+.+...|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665544
No 178
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.18 E-value=1e+02 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042649 64 TIVEDAITYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 64 sil~~ai~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
+=|+++-+.|.+|+++++.|++++.+++..
T Consensus 289 sElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 289 SELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 348999999999999999999999987654
No 179
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.68 E-value=92 Score=20.54 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 34 TAERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 34 ~~Er~RR~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.+|=+-+..+.+-+...++-- ..-.+-|.+|=.....|..+++.|+.+.+++.+
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n-----~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSAN-----LAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555444311 122334999999999999999999999987653
No 180
>PRK12483 threonine dehydratase; Reviewed
Probab=35.42 E-value=2.6e+02 Score=26.33 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=31.1
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
+..+.+.+.-+++||.|.+++..|-+. +|+..+....
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~ 379 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYA 379 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEec
Confidence 367889999999999999999999887 7777777653
No 181
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=35.23 E-value=59 Score=30.29 Aligned_cols=36 Identities=6% Similarity=0.251 Sum_probs=33.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK 166 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~ 166 (199)
.++|.|.+|-|+..+|+..|-..++++....+.+.+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 478999999999999999999999999999997664
No 182
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.21 E-value=1.5e+02 Score=20.29 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=22.4
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
+..+|.+.+|+++|.+.|+.|-....
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 35689999999999999999888854
No 183
>PRK00341 hypothetical protein; Provisional
Probab=35.11 E-value=1.3e+02 Score=21.26 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=37.7
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEE----EEEeeCCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDT----NVTTFKGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a----~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
+-++|-....+++...|++.++.+. ++-.. .-|..|..+-.++.+.+.+ .-..+.+.++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s--~~q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATD--EDQLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECC--HHHHHHHHHHHh
Confidence 5566666778999999999998764 44333 4455555555666666432 234455555554
No 184
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=34.48 E-value=2.9e+02 Score=28.27 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=52.0
Q ss_pred ccEEEEEec--CceEEEEE---EecCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEeccCCcccCHHHHHHH
Q 042649 118 EKVEVTNVD--GCKLWIRI---ISKKKRSRITKFLEAMASHGFELSDTNVTTF-KGATLISSCLNGVYSYKIEAEQVKEL 191 (199)
Q Consensus 118 ~~V~V~~~~--~~~~~I~I---~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~~~v~~t~~ve~~~~~~~s~~~lk~~ 191 (199)
|.+++..++ +..+.+-| .-+...++++.+.+.+.-+||.+.++=+-++ +|..++++.+....+......++.+.
T Consensus 217 ~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~~ 296 (1002)
T PTZ00324 217 PVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIEDR 296 (1002)
T ss_pred CeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHHH
Confidence 456666665 23444555 3345678999999999999999999999997 66677888888654432222344444
Q ss_pred HHH
Q 042649 192 LQE 194 (199)
Q Consensus 192 L~~ 194 (199)
+.+
T Consensus 297 ~~~ 299 (1002)
T PTZ00324 297 ASL 299 (1002)
T ss_pred HHh
Confidence 443
No 185
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=34.24 E-value=64 Score=21.70 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=23.5
Q ss_pred cEEEEEecCceEEEEEEecCCCCHHHHHHHHHHh
Q 042649 119 KVEVTNVDGCKLWIRIISKKKRSRITKFLEAMAS 152 (199)
Q Consensus 119 ~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLee 152 (199)
+-+|+....+++.+.|+|+++.-+|-.|=-.+++
T Consensus 6 dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~ 39 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKE 39 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcHHHHHHHHHHHHHH
Confidence 3456665667899999999977666666555544
No 186
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=34.01 E-value=1.3e+02 Score=25.56 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccCCCCCC---------------------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042649 40 REKLSNRLLTLRSLVPIITN---------------------MNKATIVEDAITYIEKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 40 R~~~~~~~~~LrslvP~~~k---------------------~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~ 90 (199)
|+-|..+|..|+..=.. .| |-.+.||.|+ =|+.++.+|++|+.++.+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 45778888888875543 22 2233333333 2788999999999998663
No 187
>PRK13702 replication protein; Provisional
Probab=33.78 E-value=1e+02 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=20.2
Q ss_pred cccHHHHHHH--HHHHHHHHHHhccCCCCCC
Q 042649 31 KNLTAERRRR--EKLSNRLLTLRSLVPIITN 59 (199)
Q Consensus 31 ~h~~~Er~RR--~~~~~~~~~LrslvP~~~k 59 (199)
.+..+||+|. .+-.+-...|.-.||+..|
T Consensus 23 Pls~aErQr~svaRKr~THkei~vfi~n~lK 53 (85)
T PRK13702 23 PLSAAEKQRASVARKRATHKEIKVFIQNPLK 53 (85)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhheeecHHHH
Confidence 5778999993 3445556788888886543
No 188
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=33.45 E-value=2.7e+02 Score=24.69 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=37.5
Q ss_pred eEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
-..|.+... ..+|.+.+++++|.+.|+.|.... +.+..+. +.+.. -+.+...++|++.|
T Consensus 337 ~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~is--~vv~~-----~d~~~av~~Lh~~f 398 (401)
T TIGR00656 337 LAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNIS--FLVDE-----KDAEKAVRKLHEVF 398 (401)
T ss_pred eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEE--EEEeH-----HHHHHHHHHHHHHH
Confidence 444555553 579999999999999999998543 3333333 23331 14456666666654
No 189
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.91 E-value=94 Score=20.92 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042649 63 ATIVEDAITYIEKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 63 ~sil~~ai~yi~~L~~~~~~l~~~~~~~ 90 (199)
+.-|++|+.-+.+|+.+++.|..+.+..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4459999999999999999999997654
No 190
>PRK02047 hypothetical protein; Provisional
Probab=32.75 E-value=1.8e+02 Score=20.53 Aligned_cols=64 Identities=11% Similarity=0.153 Sum_probs=41.2
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhC--CC--eEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASH--GF--ELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel--~L--~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
+++.++|--...+++...|.+.++.+ ++ ..++.+-|..|..+-.++.+.+.+. -..+.|.++|.
T Consensus 15 c~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~--eq~~~iY~~L~ 82 (91)
T PRK02047 15 SDFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR--EQLDNIYRALT 82 (91)
T ss_pred CCCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH--HHHHHHHHHHh
Confidence 35667777777788888888888877 43 3355666677777777777664322 23445555554
No 191
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=32.03 E-value=2e+02 Score=20.80 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=37.4
Q ss_pred ccEEEEEecCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATL 170 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~ 170 (199)
.++.|..++.....++|+-.-..--+-.|-++++++|..|.+..=...|.+++
T Consensus 35 Vnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSIDeVvaG~~iv 87 (95)
T PF02680_consen 35 VNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSIDEVVAGKRIV 87 (95)
T ss_dssp EEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEEEEEEEESS--
T ss_pred EEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEeeeeeeecceee
Confidence 46777777777777777665444568899999999999999988877777665
No 192
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=31.96 E-value=1e+02 Score=26.52 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=46.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEE--EEEEeccCCcccCHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLI--SSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~--t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
-.|.+.-.+.+|++..|--.|-.-|+.|-+.-+.-..+.-+. |+++.+.++ -.++.++-|+.+
T Consensus 78 HvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~---VveQa~rQiedl 142 (309)
T KOG2663|consen 78 HVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDG---VVEQARRQIEDL 142 (309)
T ss_pred eeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHH---HHHHHHHHHHHh
Confidence 446666678899999999999999999998888877766665 888885433 445555555443
No 193
>PRK14647 hypothetical protein; Provisional
Probab=31.70 E-value=2.5e+02 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=31.0
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 147 LEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 147 l~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
-.+++++|++++.+.+...++.-+..+.+...+| ++.+ .+.++|..+|
T Consensus 15 ~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~g--vslddC~~vSr~is~~L 65 (159)
T PRK14647 15 EQVLSSLGLELVELEYKREGREMVLRLFIDKEGG--VNLDDCAEVSRELSEIL 65 (159)
T ss_pred HHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCC--CCHHHHHHHHHHHHHHH
Confidence 4456899999999999998765544555553333 6655 4444554443
No 194
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=31.01 E-value=1.6e+02 Score=19.59 Aligned_cols=25 Identities=0% Similarity=0.060 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
..+|.+.+|+++|.+.|+.|-....
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3589999999999999998888754
No 195
>PF14992 TMCO5: TMCO5 family
Probab=30.99 E-value=75 Score=27.48 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 65 IVEDAITYIEKLQMTVKVLSDQLLE 89 (199)
Q Consensus 65 il~~ai~yi~~L~~~~~~l~~~~~~ 89 (199)
+..++++||+.||+.++.++.+++.
T Consensus 145 l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 145 LCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999998764
No 196
>PRK08818 prephenate dehydrogenase; Provisional
Probab=30.98 E-value=1.5e+02 Score=26.53 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=32.8
Q ss_pred eEEEEEEec-CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEe
Q 042649 129 KLWIRIISK-KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLN 176 (199)
Q Consensus 129 ~~~I~I~c~-~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve 176 (199)
.+++.| + ++||.|.+|+..|-..|+++.+..+......-.. |.+.
T Consensus 297 ~l~~~v--~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~ 342 (370)
T PRK08818 297 TLSVYL--PEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG 342 (370)
T ss_pred EEEEEC--CCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence 344444 5 8899999999999999999999999554332222 4444
No 197
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.44 E-value=1.2e+02 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042649 60 MNKATIVEDAITYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 60 ~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
|+|-+||--.-.-|+.+-.+|-.|+....+++..
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEED 34 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6788898888888888888888888777776654
No 198
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.36 E-value=1.7e+02 Score=19.56 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
+..+|++.+|+++|.+.++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 35689999999999999999888854
No 199
>PRK08210 aspartate kinase I; Reviewed
Probab=30.22 E-value=2.7e+02 Score=24.79 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=37.6
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+-..|.|... ..+|.+.+++++|.+.++.|.. +++.+..+ ++.+.. -..+...++|++.|
T Consensus 338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~i--s~vv~~-----~~~~~a~~~Lh~~f 400 (403)
T PRK08210 338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHTTI--WVLVKE-----EDMEKAVNALHDAF 400 (403)
T ss_pred CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCCEE--EEEEcH-----HHHHHHHHHHHHHh
Confidence 3455666554 4689999999999999999975 33222222 233331 13556666676654
No 200
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=29.96 E-value=1.7e+02 Score=19.89 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=22.9
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEe
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNVTT 164 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~vs~ 164 (199)
...+|+-.++-..|+..|+.+....-..
T Consensus 12 t~~~GlA~~~a~~L~~~Gf~v~~~~n~~ 39 (90)
T PF13399_consen 12 TGVSGLAARVADALRNRGFTVVEVGNAP 39 (90)
T ss_pred cCCcCHHHHHHHHHHHCCCceeecCCCC
Confidence 4469999999999999999997664443
No 201
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=29.27 E-value=1.6e+02 Score=19.00 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 042649 37 RRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLS 84 (199)
Q Consensus 37 r~RR~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~ 84 (199)
|.-|=.+...+..+..++-. .+ .++|.+||+.+-..++...
T Consensus 17 R~~RHD~~NhLqvI~gllql-g~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL-GK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777732 33 6789999999998888763
No 202
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.01 E-value=95 Score=16.47 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042649 73 IEKLQMTVKVLSDQLLE 89 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~ 89 (199)
|..|+.++..|+.++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56678888888887754
No 203
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=28.94 E-value=2.5e+02 Score=30.16 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee------CCeE-------------EEEEEEeccCC-cccCHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF------KGAT-------------LISSCLNGVYS-YKIEAEQ 187 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~------~~~v-------------~~t~~ve~~~~-~~~s~~~ 187 (199)
+.-.|.|.|++.|+++-.|..+|..+|+.|.......+ +|.+ -..++++...- +.-..++
T Consensus 16 ~~TvI~IV~dDmPFLVDSV~~~L~r~gl~I~~i~HPVl~V~RD~~G~L~~v~~~~~~~~~~ES~I~ieId~~~d~~~~~~ 95 (1528)
T PF05088_consen 16 DHTVIEIVTDDMPFLVDSVRMELNRQGLTIHLIIHPVLNVERDADGKLVAVGPADDSGGTRESWIHIEIDRQSDPEELEA 95 (1528)
T ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhCCCceEEEecCcEEEEECCCCcEEEecCCCCCCCceEEEEEEEEcCCCCHHHHHH
Confidence 35679999999999999999999999998876543321 1222 12244554332 3445667
Q ss_pred HHHHHHHHHh
Q 042649 188 VKELLQEIIK 197 (199)
Q Consensus 188 lk~~L~~~i~ 197 (199)
|.+.|.++|.
T Consensus 96 L~~~L~~VL~ 105 (1528)
T PF05088_consen 96 LREDLERVLE 105 (1528)
T ss_pred HHHHHHHHHH
Confidence 7777777764
No 204
>PRK14640 hypothetical protein; Provisional
Probab=28.77 E-value=2.8e+02 Score=21.48 Aligned_cols=49 Identities=16% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 146 FLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 146 Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+-..++++|++++...+...++.-+..+.+...+| ++.+ .+.++|..+|
T Consensus 12 i~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~g--v~lddC~~vSr~is~~L 63 (152)
T PRK14640 12 LEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENG--VSVENCAEVSHQVGAIM 63 (152)
T ss_pred HHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHh
Confidence 33456889999999999987765555555554444 6665 4555555544
No 205
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.75 E-value=1.9e+02 Score=19.71 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=40.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEE-EEeccCCcccCHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISS-CLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~-~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.++.|.=|.+||.|.+.++.|-. +-+|+.-++.-.++..-+++ -+++.+ . ..+++.+.|.+
T Consensus 2 ~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi~~~~--~-~~~~l~~~l~~ 63 (81)
T cd04907 2 RLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGIQVPD--A-DLDELKERLDA 63 (81)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEEEeCh--H-HHHHHHHHHHH
Confidence 45667778999999999999933 78899888887655332222 233321 1 55666666654
No 206
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=28.69 E-value=1.5e+02 Score=18.50 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=27.3
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEe
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNVTTFKG-ATLISSCLN 176 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~-~v~~t~~ve 176 (199)
++.+|.+.+++++|.+.|+.|.-...+...+ ....+|.+.
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 5679999999999999999997554433222 233345544
No 207
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=28.34 E-value=2.6e+02 Score=21.04 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 148 EAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 148 ~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
..++++|+++...++...++..+..+.+...+| ++.+++.+.=.
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g--v~lddc~~~sr 47 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGG--VSLDDCEKVSR 47 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS-----HHHHHHHHH
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC--CCHHHHHHHHH
Confidence 467899999999999999988666666664323 88877665433
No 208
>PRK06291 aspartate kinase; Provisional
Probab=28.24 E-value=3.4e+02 Score=24.84 Aligned_cols=62 Identities=6% Similarity=0.120 Sum_probs=41.7
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+-..|.|.+. ..+|++.+++.+|.+.++.|.-.+..+.+..+... +.. -..+...++|+..|
T Consensus 397 ~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~v--V~~-----~d~~~av~~Lh~~f 461 (465)
T PRK06291 397 DVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFV--VDE-----EDGERAVKVLHDEF 461 (465)
T ss_pred CEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEE--EeH-----HHHHHHHHHHHHHh
Confidence 3456777765 46899999999999999999877666655544433 331 13456666666554
No 209
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=28.00 E-value=2.8e+02 Score=21.32 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHH---HHHHHHHHH
Q 042649 147 LEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQ---VKELLQEII 196 (199)
Q Consensus 147 l~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~---lk~~L~~~i 196 (199)
-.++.++|+++....+...++.-+..+.+...+| ++.++ +.++|..+|
T Consensus 14 ~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~g--v~iddc~~~Sr~is~~L 64 (154)
T PRK00092 14 EPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGG--IDLDDCEEVSRQISAVL 64 (154)
T ss_pred HHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHHh
Confidence 4456889999999999997766655666664333 56554 444554443
No 210
>PRK09224 threonine dehydratase; Reviewed
Probab=27.97 E-value=4.1e+02 Score=24.73 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=41.0
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC-eEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG-ATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~-~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+.+.+.+.=+.+||-|.++++.|- +.+|+..+....+. ..-..+.++..+. .-..++|.++|.+
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~-~~~~~~i~~~L~~ 391 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG-QEERAEIIAQLRA 391 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh-hhHHHHHHHHHHH
Confidence 578899999999999999999998 57777777665332 2222233443211 1124566666653
No 211
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=27.63 E-value=1.5e+02 Score=26.74 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=45.5
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
...|-|.=.++||++.+|...|.++++.|-.-.+...++..+..+-+.. .-.+++.+.|.+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~-----~~~~~~~~~i~~ 398 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA-----DYAEEALDALKA 398 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC-----CCcHHHHHHHHc
Confidence 4555666678999999999999999999998888888876665554441 234566666654
No 212
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=27.38 E-value=67 Score=19.83 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=21.1
Q ss_pred cccccccHHHHHHHHHHHHHHHHHhccCCCC
Q 042649 27 DFKSKNLTAERRRREKLSNRLLTLRSLVPII 57 (199)
Q Consensus 27 ~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~ 57 (199)
...+...+.|=.||..++..|..-..++|..
T Consensus 7 T~SM~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 7 TDSMQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3445566788899999999999999999964
No 213
>PRK11020 hypothetical protein; Provisional
Probab=27.37 E-value=1.2e+02 Score=22.62 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 36 ERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 36 Er~RR~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 88 (199)
+++-=++++++++.++.=++.....+.+.++.+--+-|..|..+++.|.....
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999988777777777778888888888888888877776654
No 214
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.15 E-value=2.4e+02 Score=22.06 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHHHH-HHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHH
Q 042649 144 TKFLE-AMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEI 195 (199)
Q Consensus 144 ~~Il~-aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~ 195 (199)
..+++ .++++|++++.+.+...+..-+.-+.+... ..++.+ .+.+++..+
T Consensus 11 ~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~--g~v~lddC~~vSr~is~~ 64 (153)
T COG0779 11 TELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE--GGVTLDDCADVSRAISAL 64 (153)
T ss_pred HHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC--CCCCHHHHHHHHHHHHHH
Confidence 33444 458999999999999988544444444433 345555 444444433
No 215
>PLN02551 aspartokinase
Probab=26.89 E-value=3.8e+02 Score=25.19 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=39.3
Q ss_pred eEEEEEEec--CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISK--KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~--~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
-..|.|.+. ..+|++.+++.+|.+.|+.|.-.+..+..-.+. +.+.- -..+...++|++.|
T Consensus 445 vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS--~vV~~-----~d~~~Av~aLH~~F 507 (521)
T PLN02551 445 RSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNIS--LIVND-----DEAEQCVRALHSAF 507 (521)
T ss_pred EEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEE--EEEeH-----HHHHHHHHHHHHHH
Confidence 445555544 468999999999999999997776655443333 33331 14456666666554
No 216
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=26.65 E-value=4.4e+02 Score=24.53 Aligned_cols=63 Identities=11% Similarity=0.080 Sum_probs=40.9
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEeccCCcccCHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGAT-LISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v-~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
++.+.+.+.=+.+||.|.++++.|-. .+|+..+....+... -..+.++.. +.-..++|.++|.
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~--~~~~~~~l~~~L~ 386 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS--NPQERQEILARLN 386 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC--CHHHHHHHHHHHH
Confidence 46789999999999999999999987 477777766543322 222344532 1223455555554
No 217
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=26.51 E-value=1.5e+02 Score=20.42 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=21.0
Q ss_pred HHHHHHHHHhccCCCCCCCCcccHHHHHHH-HHHHHH
Q 042649 42 KLSNRLLTLRSLVPIITNMNKATIVEDAIT-YIEKLQ 77 (199)
Q Consensus 42 ~~~~~~~~LrslvP~~~k~dk~sil~~ai~-yi~~L~ 77 (199)
.+.+++..|.+ + +-..|+.++.+||+ ||.+++
T Consensus 15 E~~eRL~~Ls~---~-tgrtkayyvrEaIE~~ieemE 47 (80)
T COG4710 15 ELKERLDNLSK---N-TGRTKAYYVREAIEAYIEEME 47 (80)
T ss_pred HHHHHHHHHHH---h-cCCchhHHHHHHHHHHHHHHH
Confidence 35566666655 3 23478999999996 565544
No 218
>PRK14636 hypothetical protein; Provisional
Probab=26.10 E-value=3.4e+02 Score=21.63 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHH---HHHHHHHHH
Q 042649 148 EAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQ---VKELLQEII 196 (199)
Q Consensus 148 ~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~---lk~~L~~~i 196 (199)
..++++|++++.+.+...++.-+..+.+...++..++.++ +.++|..+|
T Consensus 13 p~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~L 64 (176)
T PRK14636 13 PEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVF 64 (176)
T ss_pred HHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHh
Confidence 4568999999999998877555545555433333466654 444554443
No 219
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=26.09 E-value=1.7e+02 Score=18.04 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCCeEEE-------EEEEeccCCcccCHHHHHHHHHHH
Q 042649 144 TKFLEAMASHGFELSDTNVTTFKGATLI-------SSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 144 ~~Il~aLeel~L~Vv~a~vs~~~~~v~~-------t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.++...|+.+|+.+.+.. |+...+ ++.+..-++..+....+++-|.+|
T Consensus 2 ~el~k~L~~~G~~~~r~~----GSH~~~~~~~~~~~~~vp~h~~~ei~~~~~k~ilkqa 56 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQK----GSHHIFRHPGGRKIVTVPPHPGKEIKPGTVKQILKQA 56 (56)
T ss_dssp HHHHHHHHHTT-EEEEEE----TTEEEEE-TTS-E-EEEE-SSS-S--HHHHHHHHHHT
T ss_pred hHHHHHHHHCCCEEecCC----CCEEEEEeCCCCcceEeCCCCccccCHHHHHHHHHcC
Confidence 478999999999998542 332222 134443344557888888766653
No 220
>PRK14630 hypothetical protein; Provisional
Probab=25.93 E-value=3.1e+02 Score=21.06 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHH
Q 042649 146 FLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQ 187 (199)
Q Consensus 146 Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~ 187 (199)
+-..++++|++++...+...++.-+..+.+...+| ++.++
T Consensus 14 i~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--V~idD 53 (143)
T PRK14630 14 IKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS--FGVDT 53 (143)
T ss_pred HHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC--CCHHH
Confidence 34457999999999999887664445555554444 66654
No 221
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=25.68 E-value=3.8e+02 Score=22.09 Aligned_cols=63 Identities=6% Similarity=0.078 Sum_probs=41.1
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+...+.+.|... -..++.+.|.+.++.+.+.++...++.....+.+... ...+.+++.+.|.+
T Consensus 143 ~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~ 205 (215)
T PRK09977 143 KHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLH--ATTSIEDLYRLLKG 205 (215)
T ss_pred CcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEEC--CCCCHHHHHHHHhc
Confidence 346677888654 3688999999999999999887544332233333322 34567777766653
No 222
>PRK09034 aspartate kinase; Reviewed
Probab=25.63 E-value=3.6e+02 Score=24.64 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=28.9
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
+-..|.|... ..+|++.+++.+|.+.++.|.-.+.++.
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~S 424 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSS 424 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCC
Confidence 4556666543 4689999999999999999987765443
No 223
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.57 E-value=78 Score=20.47 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042649 73 IEKLQMTVKVLSDQLLE 89 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~ 89 (199)
++.+++++++++++.++
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555566666555554
No 224
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=25.33 E-value=1.6e+02 Score=26.98 Aligned_cols=37 Identities=8% Similarity=0.291 Sum_probs=31.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG 167 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~ 167 (199)
.|+|.|.++=|+.-+++..|-..++++-...+-..+.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~~ 38 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGR 38 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCCe
Confidence 4789999999999999999999999998888844443
No 225
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=25.25 E-value=2.2e+02 Score=19.27 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCeEEEEEEEeeCC
Q 042649 144 TKFLEAMASHGFELSDTNVTTFKG 167 (199)
Q Consensus 144 ~~Il~aLeel~L~Vv~a~vs~~~~ 167 (199)
..|.++|..+|++|..+.-....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~ 25 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD 25 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC
Confidence 468999999999999999887766
No 226
>PRK06635 aspartate kinase; Reviewed
Probab=25.22 E-value=3.6e+02 Score=23.91 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=27.4
Q ss_pred ceEEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEE
Q 042649 128 CKLWIRIIS---KKKRSRITKFLEAMASHGFELSDTN 161 (199)
Q Consensus 128 ~~~~I~I~c---~~~~gll~~Il~aLeel~L~Vv~a~ 161 (199)
+-..|.|.+ ...+|.+.+++++|.+.++.|.-..
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 455677765 3568999999999999999998764
No 227
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.97 E-value=1.9e+02 Score=18.39 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..+|++.+++++|.+.++.++....+ + +-.++.+.. -+.++..++|+..|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s--~--~~is~vv~~-----~d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN--D--LNLTFVVDE-----DQADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC--C--CeEEEEEeH-----HHHHHHHHHHHHHH
Confidence 56899999999998887766433332 2 222233441 13455666666543
No 228
>PRK14641 hypothetical protein; Provisional
Probab=24.70 E-value=3.5e+02 Score=21.52 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=29.2
Q ss_pred HhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 151 ASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 151 eel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+++|++++.+.+...++.-+..+.+...+| ++.+ .+.++|..+|
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~~~g--v~lDdC~~vSr~Is~~L 66 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDADTG--IRIDQCAFFSRRIRERL 66 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeCCCC--CCHHHHHHHHHHHHHHh
Confidence 488999999999998765555556664333 6665 4444555444
No 229
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=24.66 E-value=2.6e+02 Score=24.65 Aligned_cols=53 Identities=26% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHh---------ccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 39 RREKLSNRLLTLR---------SLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 39 RR~~~~~~~~~Lr---------slvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
|...++..+..|- ++.|...+.+=+.+|.++-+-.+.|+..++.|..+..++.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666555554 2222222334456799999999999999999999886543
No 230
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=24.62 E-value=3.2e+02 Score=25.49 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=39.2
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 134 IISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 134 I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+...++||.+..|...|-+.++.|-+.+++.. ++..+..+.+. +.++ +++.++|.+
T Consensus 457 ~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D----~~v~-~~~l~~i~~ 514 (526)
T PRK13581 457 IRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD----DPVP-EEVLEELRA 514 (526)
T ss_pred EEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC----CCCC-HHHHHHHhc
Confidence 34577899999999999999999999998874 45555444443 2233 555555543
No 231
>PLN02551 aspartokinase
Probab=24.35 E-value=3.9e+02 Score=25.09 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=28.9
Q ss_pred ceEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 128 CKLWIRIISKK---KRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 128 ~~~~I~I~c~~---~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
+-..|.|.+.. .+|.+.+|+.+|.++++.|.-...
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence 34688888764 689999999999999999988853
No 232
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=24.15 E-value=1.6e+02 Score=20.59 Aligned_cols=27 Identities=33% Similarity=0.350 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
|..+-.-|..+|.+++.|+.++.+++.
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888999999999999887654
No 233
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.05 E-value=2.5e+02 Score=19.29 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 137 KKKRSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 137 ~~~~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
.+.-|.+.++|+.|+.+|+.+-+.-+.-.
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh~PSGID 40 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEHMPSGID 40 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEeeecCCCc
Confidence 34679999999999999998877654433
No 234
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=23.75 E-value=2.1e+02 Score=19.23 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=25.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
-++|+|.| .+.-..+|++..+.++..|++.+-
T Consensus 4 l~LiKV~~--~~~~r~ei~~l~~~f~a~ivd~~~ 35 (75)
T PF10369_consen 4 LALIKVKA--TPENRSEILQLAEIFRARIVDVSP 35 (75)
T ss_dssp EEEEEEE---SCHHHHHHHHHHHHTT-EEEEEET
T ss_pred EEEEEEEC--CccCHHHHHHHHHHhCCEEEEECC
Confidence 47899998 467889999999999999988753
No 235
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=23.54 E-value=3.2e+02 Score=20.49 Aligned_cols=54 Identities=11% Similarity=0.241 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEEEe-eCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 140 RSRITKFLEAMASHGFELSDTNVTT-FKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 140 ~gll~~Il~aLeel~L~Vv~a~vs~-~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
+.=+-.++++|.+.|++|+...=-- ++.--+..+|+.. .-++..+.++|..++.
T Consensus 67 ~~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~----~gdp~~lA~~vr~Ald 121 (123)
T PF07485_consen 67 EDEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWG----VGDPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEe----cCCHHHHHHHHHHHHh
Confidence 3446789999999999998765443 2333344456662 2378888888888875
No 236
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=23.52 E-value=1.7e+02 Score=20.49 Aligned_cols=49 Identities=10% Similarity=0.230 Sum_probs=30.9
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC---CeEEEEEEEe
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK---GATLISSCLN 176 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~---~~v~~t~~ve 176 (199)
+++.++.+.=|.+||.|...+++|-... +|+--++--.+ +.++..+.+.
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~~-nITeF~YR~~~~~~a~vlvgi~v~ 59 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPRN-NITEFHYRYSGDDFARVLVGIEVP 59 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSSE--EEEEEEE-TTTSCSEEEEEEE-S
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCCc-eEEEEEEcCCCCCeeeEEEEEEeC
Confidence 4578889999999999999999886654 26666665443 3555555554
No 237
>PF04359 DUF493: Protein of unknown function (DUF493); InterPro: IPR007454 This family includes several proteins of uncharacterised function.; PDB: 1RWU_A 2JOQ_A 2H9Z_A.
Probab=23.52 E-value=1.2e+02 Score=20.82 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=35.9
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhC----CCeEEEEEEEeeCCeEEEEEEEec
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASH----GFELSDTNVTTFKGATLISSCLNG 177 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel----~L~Vv~a~vs~~~~~v~~t~~ve~ 177 (199)
.+.+++-....+++...|..+++.+ .-..+..+.|..|..+-.++.+.+
T Consensus 10 ~y~~KvIg~~~~~~~~~v~~iv~~~~~~~~~~~~~~k~S~~GkY~Svtv~v~v 62 (85)
T PF04359_consen 10 DYPFKVIGKAEEDFVEAVKEIVEKHAPEFDDEKVSSKPSSKGKYVSVTVSVTV 62 (85)
T ss_dssp EEEEEEEEC-STTHHHHHCCCCCCHSS--SSEEEEECCSTTSSEEEEEEEEEE
T ss_pred cceEEEEEECcHhHHHHHHHHHHHhCCcCccCceEEecCCCCeEEEEEEEEEE
Confidence 4667777777888888888888886 456666776667777777777775
No 238
>PRK14633 hypothetical protein; Provisional
Probab=23.33 E-value=3.5e+02 Score=20.85 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=30.7
Q ss_pred HHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHH---HHHHHHHHHH
Q 042649 146 FLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAE---QVKELLQEII 196 (199)
Q Consensus 146 Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~---~lk~~L~~~i 196 (199)
+-..++++|++++...+...++.++ .+.+...+| ++.+ .+.++|..+|
T Consensus 10 v~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~G--v~lddC~~vSr~i~~~L 60 (150)
T PRK14633 10 VEPITADLGYILWGIEVVGSGKLTI-RIFIDHENG--VSVDDCQIVSKEISAVF 60 (150)
T ss_pred HHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCC--CCHHHHHHHHHHHHHHh
Confidence 4456799999999999998776533 444443344 6654 4445555443
No 239
>PRK07431 aspartate kinase; Provisional
Probab=23.19 E-value=3.9e+02 Score=25.18 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=39.6
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+-..|.|.+. ..+|++.+++.+|.+.++.|...+ +.+..+ ++.+.. -..+...++|++.|
T Consensus 347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~I--s~vv~~-----~d~~~av~~Lh~~f 409 (587)
T PRK07431 347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKV--SCVIDA-----EDGDKALRAVCEAF 409 (587)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEcH-----HHHHHHHHHHHHHh
Confidence 4566777775 468999999999999999997777 222222 222331 13556666666655
No 240
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=23.15 E-value=1.5e+02 Score=17.45 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 60 MNKATIVEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 60 ~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
.||--|..+++.-+++|-+--..|+.++++++
T Consensus 3 Vdk~rifmEnV~AvqeLck~t~~Le~rI~ele 34 (36)
T PF13887_consen 3 VDKERIFMENVGAVQELCKLTDNLETRIDELE 34 (36)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 36778899999999999998888888887765
No 241
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=23.02 E-value=2.7e+02 Score=19.36 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=32.6
Q ss_pred CCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 153 HGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 153 l~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
+.+.++++...-.+..++..+..+ ..++.-+|.+.|...++
T Consensus 40 L~m~lvd~e~~~D~~k~~fyy~a~----~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 40 LPMKLVDVEYQFDGSKLTFYYTAE----SRVDFRELVRDLAREFK 80 (88)
T ss_pred CCeEEEEEEEEcCCCEEEEEEEeC----CcCcHHHHHHHHHHHhC
Confidence 467889999988888888888866 67888888888876653
No 242
>PF12229 PG_binding_4: Putative peptidoglycan binding domain; InterPro: IPR022029 This domain is found associated with the L,D-transpeptidase domain PF03734 from PFAM. The structure of this domain has been solved and shows a mixed alpha-beta fold composed of nine beta strands and four alpha helices. This domain is usually found to be duplicated. Therefore, it seems likely that this domain acts to bind the two unlinked peptidoglycan chains and bring them into close association so they can be cross linked by the transpeptidase domain. ; PDB: 2HKL_C 1ZAT_A.
Probab=22.00 E-value=1.4e+02 Score=20.63 Aligned_cols=55 Identities=15% Similarity=0.419 Sum_probs=35.2
Q ss_pred CHHHHHHHHH-HhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHHhc
Q 042649 141 SRITKFLEAM-ASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEIIKS 198 (199)
Q Consensus 141 gll~~Il~aL-eel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~~ 198 (199)
-.+...+..+ .+..-.-+++.++..++.+..+ +...|..++.+.+.+.|.++|..
T Consensus 53 ~~l~~~v~~~~~~~~~~~~na~~~~~~~~~~i~---~~~~G~~id~~~~~~~i~~al~~ 108 (114)
T PF12229_consen 53 EKLEQYVDELAKEYNTPPVNASISIDGGTFTIT---PGQYGWKIDVDKLAEAIKKALKN 108 (114)
T ss_dssp HHHHHHHHHHHHHH-TTTS-EEEE-SSCEEEE------SS-EEE-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCCcceEEEEeCCEEEEc---CCcCeEEEcHHHHHHHHHHHHHc
Confidence 4566666666 5557777899999977765433 55668889999999999988853
No 243
>PRK08210 aspartate kinase I; Reviewed
Probab=21.93 E-value=5.7e+02 Score=22.72 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=29.3
Q ss_pred ceEEEEEEecCC-CCHHHHHHHHHHhCCCeEEEEEEE
Q 042649 128 CKLWIRIISKKK-RSRITKFLEAMASHGFELSDTNVT 163 (199)
Q Consensus 128 ~~~~I~I~c~~~-~gll~~Il~aLeel~L~Vv~a~vs 163 (199)
+-..|.|..... +|.+.+|+.+|.+.|+.|.....+
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 456777776654 899999999999999998887555
No 244
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=21.89 E-value=2.8e+02 Score=19.16 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=36.2
Q ss_pred EEEEecCCCCHHHHHHHHHHhC-CCeEEEEEEEeeCCeEEEEEEEeccCC---cccCHHHHHHHHHHHHhc
Q 042649 132 IRIISKKKRSRITKFLEAMASH-GFELSDTNVTTFKGATLISSCLNGVYS---YKIEAEQVKELLQEIIKS 198 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel-~L~Vv~a~vs~~~~~v~~t~~ve~~~~---~~~s~~~lk~~L~~~i~~ 198 (199)
|++|..+-..-...+++.|++. +++|+..--....|.-.....+-+ +| ..-+.++|.+++.+.|..
T Consensus 5 VefC~~Nl~~g~~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~~pFAlV-nG~~V~A~t~eeL~~kI~~~i~e 74 (78)
T PF07293_consen 5 VEFCVSNLASGTDQVYEKLEKDPDIDVIEYGCLSYCGPCAKKPFALV-NGEIVAAETAEELLEKIKEKIEE 74 (78)
T ss_pred EEEcccCchhhhHHHHHHHhcCCCccEEEcChhhhCcCCCCCccEEE-CCEEEecCCHHHHHHHHHHHHhc
Confidence 5555554333344578888766 677765544444332221111111 22 235889999999887753
No 245
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=21.41 E-value=4.4e+02 Score=21.97 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=32.1
Q ss_pred EEEEEEecCCCCH-HHHHHHHHHhCCCeEEEEEEEeeCCe
Q 042649 130 LWIRIISKKKRSR-ITKFLEAMASHGFELSDTNVTTFKGA 168 (199)
Q Consensus 130 ~~I~I~c~~~~gl-l~~Il~aLeel~L~Vv~a~vs~~~~~ 168 (199)
+.|.++|.+..|+ +...+.+++ .|.+.+++++.-.|++
T Consensus 190 i~l~~H~Hn~~GlA~An~laAi~-aG~~~iD~s~~GlG~~ 228 (268)
T cd07940 190 VPISVHCHNDLGLAVANSLAAVE-AGARQVECTINGIGER 228 (268)
T ss_pred eeEEEEecCCcchHHHHHHHHHH-hCCCEEEEEeeccccc
Confidence 6788999999997 668888886 5999999999998853
No 246
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=20.81 E-value=3.6e+02 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=39.0
Q ss_pred EEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 134 IISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 134 I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
+...++||++..|...|-++++.|-+.++... ++..+..+.+. +.++ +++.++|.+
T Consensus 456 ~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D----~~v~-~~~l~~i~~ 513 (525)
T TIGR01327 456 ILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD----QPVP-DEVLEEIKA 513 (525)
T ss_pred EEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC----CCCC-HHHHHHHhc
Confidence 34467899999999999999999998888864 45555444444 2233 555555543
No 247
>PLN02550 threonine dehydratase
Probab=20.42 E-value=4.3e+02 Score=25.38 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=39.6
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-CeEEEEEEEeccCCcccCHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-GATLISSCLNGVYSYKIEAEQVKELLQ 193 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v~~t~~ve~~~~~~~s~~~lk~~L~ 193 (199)
..+.+.+.-+++||.|.++++.|-+. +|+..+....+ +.....+.++.. +.-..++|.++|.
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~--~~~~~~~i~~~l~ 478 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH--TEQELQALKKRME 478 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC--CHHHHHHHHHHHH
Confidence 45788899999999999999999875 77777776532 223333444432 1223344555544
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.10 E-value=4.2e+02 Score=20.48 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEMESSS 94 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~~~~ 94 (199)
..+....|..|+.+++.|+.++..+.+..
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67889999999999999999999887743
Done!