Query 042649
Match_columns 199
No_of_seqs 155 out of 1233
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 1.8E-18 6.1E-23 121.3 6.3 67 26-92 4-71 (82)
2 1hlo_A Protein (transcription 99.7 7.8E-17 2.7E-21 112.4 5.6 69 24-92 8-78 (80)
3 1nkp_A C-MYC, MYC proto-oncoge 99.7 9.2E-17 3.1E-21 113.9 5.3 67 25-91 3-72 (88)
4 1nkp_B MAX protein, MYC proto- 99.7 1.8E-16 6.2E-21 111.3 6.6 65 28-92 2-68 (83)
5 4ati_A MITF, microphthalmia-as 99.6 2.9E-16 1E-20 117.1 7.1 78 11-88 10-91 (118)
6 4h10_B Circadian locomoter out 99.6 4.4E-16 1.5E-20 105.7 5.2 60 24-83 4-64 (71)
7 1an4_A Protein (upstream stimu 99.6 1.3E-16 4.4E-21 107.0 2.4 55 26-80 3-63 (65)
8 1nlw_A MAD protein, MAX dimeri 99.6 1.8E-15 6.2E-20 105.4 7.6 64 29-92 2-68 (80)
9 1a0a_A BHLH, protein (phosphat 99.6 2.1E-16 7E-21 105.4 0.5 52 29-80 3-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.5 1.6E-15 5.6E-20 103.7 2.3 54 25-78 6-63 (73)
11 3u5v_A Protein MAX, transcript 99.5 6.4E-15 2.2E-19 101.6 3.6 59 26-84 3-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.3 4.2E-13 1.5E-17 90.5 3.6 57 24-80 8-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.3 1.7E-12 5.9E-17 85.4 4.9 54 28-81 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 1.4E-10 4.6E-15 100.9 5.0 55 25-79 9-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 8.2E-10 2.8E-14 97.0 4.3 56 24-79 9-68 (387)
16 2lfh_A DNA-binding protein inh 98.8 5.7E-10 1.9E-14 74.4 1.0 47 32-78 18-67 (68)
17 4ath_A MITF, microphthalmia-as 98.6 7.7E-08 2.6E-12 66.6 6.3 50 40-89 4-57 (83)
18 4aya_A DNA-binding protein inh 98.4 5.6E-07 1.9E-11 64.1 5.6 48 34-81 31-81 (97)
19 1zpv_A ACT domain protein; str 97.9 0.00027 9.4E-09 48.6 11.5 66 129-196 5-70 (91)
20 1u8s_A Glycine cleavage system 97.4 0.0011 3.8E-08 52.1 9.8 65 129-196 6-70 (192)
21 2nyi_A Unknown protein; protei 97.2 0.0031 1.1E-07 49.8 10.2 66 129-194 5-71 (195)
22 2nyi_A Unknown protein; protei 96.9 0.0038 1.3E-07 49.3 8.3 66 128-196 92-163 (195)
23 2ko1_A CTR148A, GTP pyrophosph 96.8 0.013 4.6E-07 39.4 9.6 49 129-177 5-53 (88)
24 1u8s_A Glycine cleavage system 96.6 0.019 6.4E-07 44.9 10.2 68 128-197 92-167 (192)
25 3o1l_A Formyltetrahydrofolate 96.3 0.039 1.3E-06 46.8 11.1 68 127-195 20-89 (302)
26 3p96_A Phosphoserine phosphata 96.1 0.023 7.9E-07 49.4 9.0 67 128-195 11-77 (415)
27 3n0v_A Formyltetrahydrofolate 96.0 0.047 1.6E-06 45.9 10.1 65 129-195 8-74 (286)
28 3obi_A Formyltetrahydrofolate 95.9 0.053 1.8E-06 45.6 10.1 67 128-195 5-73 (288)
29 3lou_A Formyltetrahydrofolate 95.5 0.08 2.7E-06 44.6 9.6 68 128-195 9-79 (292)
30 2jhe_A Transcription regulator 94.7 0.087 3E-06 39.6 6.9 35 131-165 2-36 (190)
31 3nrb_A Formyltetrahydrofolate 94.5 0.2 7E-06 41.9 9.1 65 128-195 6-72 (287)
32 2f1f_A Acetolactate synthase i 94.4 0.09 3.1E-06 40.6 6.2 63 130-195 4-68 (164)
33 1y7p_A Hypothetical protein AF 93.6 0.21 7.3E-06 40.3 7.1 61 129-194 4-69 (223)
34 2pc6_A Probable acetolactate s 92.9 0.15 5.3E-06 39.3 5.2 63 130-195 5-69 (165)
35 2fgc_A Acetolactate synthase, 90.2 0.66 2.3E-05 36.7 6.3 64 130-196 30-95 (193)
36 2f06_A Conserved hypothetical 87.6 5.1 0.00017 29.1 9.4 56 132-194 75-130 (144)
37 2f06_A Conserved hypothetical 82.0 12 0.00041 27.0 9.3 37 131-167 8-44 (144)
38 3mwb_A Prephenate dehydratase; 75.1 10 0.00036 31.9 7.7 64 129-194 201-266 (313)
39 2qmx_A Prephenate dehydratase; 75.0 14 0.00049 30.5 8.5 62 131-194 202-264 (283)
40 3luy_A Probable chorismate mut 75.0 31 0.0011 29.1 10.8 56 138-195 217-273 (329)
41 2qmw_A PDT, prephenate dehydra 72.1 11 0.00039 30.9 7.1 63 130-195 187-253 (267)
42 2re1_A Aspartokinase, alpha an 71.0 19 0.00066 26.8 7.8 61 127-196 101-164 (167)
43 2wt7_A Proto-oncogene protein 69.4 16 0.00056 23.0 6.0 44 36-92 1-44 (63)
44 1zme_C Proline utilization tra 64.0 6.8 0.00023 24.7 3.4 24 70-93 43-66 (70)
45 2l5g_A GPS2 protein, G protein 63.9 12 0.0004 21.4 3.8 31 60-90 4-34 (38)
46 2oqq_A Transcription factor HY 63.2 8.2 0.00028 22.7 3.2 23 71-93 3-25 (42)
47 2lqj_A Mg2+ transport protein; 63.1 19 0.00065 24.7 5.7 41 129-169 8-51 (94)
48 2re1_A Aspartokinase, alpha an 62.0 36 0.0012 25.3 7.7 50 127-176 23-74 (167)
49 2er8_A Regulatory protein Leu3 61.2 5.9 0.0002 25.3 2.7 23 70-92 48-70 (72)
50 3he4_B Synzip5; heterodimeric 59.9 18 0.00062 20.8 4.2 26 66-91 5-30 (46)
51 1rwu_A Hypothetical UPF0250 pr 58.4 46 0.0016 23.5 7.7 49 128-177 35-86 (109)
52 2dtj_A Aspartokinase; protein- 56.7 60 0.002 24.3 8.6 51 126-176 12-66 (178)
53 2dt9_A Aspartokinase; protein- 56.4 52 0.0018 24.3 7.7 51 126-176 13-67 (167)
54 1dh3_A Transcription factor CR 52.5 15 0.00051 22.7 3.4 22 71-92 22-43 (55)
55 1pd7_B MAD1; PAH2, SIN3, eukar 52.0 21 0.0007 18.7 3.2 20 60-79 2-21 (26)
56 1phz_A Protein (phenylalanine 51.1 28 0.00095 30.7 6.0 64 129-195 34-98 (429)
57 2dt9_A Aspartokinase; protein- 49.9 70 0.0024 23.6 7.5 61 127-196 93-156 (167)
58 3mtj_A Homoserine dehydrogenas 48.4 63 0.0021 28.4 8.0 35 128-162 358-392 (444)
59 2dtj_A Aspartokinase; protein- 46.6 71 0.0024 23.9 7.1 61 127-196 93-156 (178)
60 2jee_A YIIU; FTSZ, septum, coi 45.9 30 0.001 23.3 4.2 26 66-91 15-40 (81)
61 1gd2_E Transcription factor PA 45.9 21 0.00071 23.3 3.4 20 70-89 28-47 (70)
62 1hwt_C Protein (heme activator 45.1 7.5 0.00026 25.3 1.1 22 70-91 57-78 (81)
63 3ab4_A Aspartokinase; aspartat 44.2 1.5E+02 0.0052 25.3 9.9 50 127-176 262-315 (421)
64 3s1t_A Aspartokinase; ACT doma 42.4 90 0.0031 23.5 7.2 60 128-196 95-157 (181)
65 2dgc_A Protein (GCN4); basic d 41.5 27 0.00093 22.1 3.4 23 70-92 29-51 (63)
66 2zbc_A 83AA long hypothetical 41.2 65 0.0022 20.3 7.9 38 130-170 4-41 (83)
67 1jnm_A Proto-oncogene C-JUN; B 38.7 32 0.0011 21.5 3.4 23 70-92 21-43 (62)
68 2ke4_A CDC42-interacting prote 37.5 81 0.0028 21.7 5.6 63 30-93 8-91 (98)
69 1pyi_A Protein (pyrimidine pat 37.4 39 0.0013 22.4 3.9 24 70-93 47-70 (96)
70 1t2k_D Cyclic-AMP-dependent tr 34.6 41 0.0014 20.9 3.4 23 70-92 21-43 (61)
71 3fx7_A Putative uncharacterize 34.2 96 0.0033 21.3 5.4 23 66-88 65-87 (94)
72 1xkm_B Distinctin chain B; por 33.4 46 0.0016 16.9 2.7 18 64-81 4-21 (26)
73 1sc6_A PGDH, D-3-phosphoglycer 32.9 2.3E+02 0.0079 24.2 9.4 62 130-194 332-393 (404)
74 1kd8_B GABH BLL, GCN4 acid bas 32.8 49 0.0017 18.6 3.0 19 73-91 3-21 (36)
75 1gmj_A ATPase inhibitor; coile 32.1 1.2E+02 0.004 20.5 5.5 45 40-92 35-79 (84)
76 3ab4_A Aspartokinase; aspartat 31.9 1.9E+02 0.0065 24.7 8.3 60 128-196 343-405 (421)
77 2dnr_A Synaptojanin-1; RRM dom 31.6 83 0.0028 21.4 4.8 37 129-166 9-51 (91)
78 3v86_A De novo design helix; c 31.3 43 0.0015 17.1 2.4 17 72-88 1-17 (27)
79 3coq_A Regulatory protein GAL4 29.5 49 0.0017 21.5 3.3 22 70-91 44-65 (89)
80 3ra3_B P2F; coiled coil domain 27.9 43 0.0015 17.3 2.0 19 73-91 2-20 (28)
81 2rp4_A Transcription factor P5 27.6 49 0.0017 21.7 2.8 35 118-152 10-44 (76)
82 2x3d_A SSO6206; unknown functi 27.4 1.5E+02 0.0053 20.4 6.2 50 118-167 36-85 (96)
83 2wq1_A General control protein 27.3 71 0.0024 17.6 3.0 18 74-91 3-20 (33)
84 2wuj_A Septum site-determining 26.4 82 0.0028 19.3 3.7 27 65-91 28-54 (57)
85 2raq_A Conserved protein MTH88 26.1 1.6E+02 0.0056 20.3 6.3 50 118-167 37-86 (97)
86 3c3g_A Alpha/beta peptide with 26.1 77 0.0026 17.5 3.0 19 73-91 2-20 (33)
87 1ygy_A PGDH, D-3-phosphoglycer 26.0 2.6E+02 0.0089 24.7 8.4 47 130-176 455-503 (529)
88 1p3q_Q VPS9P, vacuolar protein 25.9 54 0.0019 20.2 2.7 25 34-58 3-27 (54)
89 2lf0_A Uncharacterized protein 25.7 1.8E+02 0.0062 20.8 5.8 54 35-88 7-60 (123)
90 2rrl_A FLIK, flagellar HOOK-le 24.2 1.8E+02 0.006 22.1 5.9 47 118-165 101-153 (169)
91 2jqq_A Conserved oligomeric go 24.2 35 0.0012 26.8 1.9 44 40-84 53-96 (204)
92 3s1t_A Aspartokinase; ACT doma 23.6 2.3E+02 0.0079 21.1 9.1 50 127-176 14-67 (181)
93 2cly_B ATP synthase D chain, m 23.6 1.1E+02 0.0039 22.8 4.7 31 65-95 96-126 (160)
94 1kd8_A GABH AIV, GCN4 acid bas 23.6 58 0.002 18.3 2.2 17 74-90 4-20 (36)
95 2oxj_A Hybrid alpha/beta pepti 23.5 92 0.0031 17.3 3.0 19 73-91 3-21 (34)
96 2xze_Q Charged multivesicular 23.0 43 0.0015 19.4 1.7 12 41-52 29-40 (40)
97 3p96_A Phosphoserine phosphata 21.9 3.5E+02 0.012 22.5 9.3 65 129-196 101-166 (415)
98 3c3f_A Alpha/beta peptide with 21.7 1E+02 0.0036 17.0 3.0 19 73-91 3-21 (34)
99 3bpd_A Uncharacterized protein 21.4 1.8E+02 0.0061 20.2 4.9 51 118-168 37-87 (100)
100 4dzn_A Coiled-coil peptide CC- 21.1 1.1E+02 0.0037 16.3 3.0 18 73-90 4-21 (33)
101 3m48_A General control protein 20.6 67 0.0023 17.7 2.1 17 75-91 4-20 (33)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.74 E-value=1.8e-18 Score=121.34 Aligned_cols=67 Identities=24% Similarity=0.435 Sum_probs=62.9
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPII-TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
...+.+|+.+||+||++||+.|..|+++||+. .|+||++||.+||+||++|+.+++.|+.+...|+.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999987 79999999999999999999999999999988764
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=7.8e-17 Score=112.40 Aligned_cols=69 Identities=22% Similarity=0.445 Sum_probs=63.1
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPII--TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.+...+..|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|+.+++.|+.+.++|+.
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999999999999999975 59999999999999999999999999999987753
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=9.2e-17 Score=113.95 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=59.9
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+...+..|+..||+||..||+.|..|+++||.. .|++|++||.+||+||+.|+.+.+.+..+++.+.
T Consensus 3 d~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 3 MNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999999999999999999975 4999999999999999999999998887776543
No 4
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.65 E-value=1.8e-16 Score=111.28 Aligned_cols=65 Identities=20% Similarity=0.425 Sum_probs=59.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 28 FKSKNLTAERRRREKLSNRLLTLRSLVPII--TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 28 ~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.+..|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|+.+++.|+.+++++..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999974 69999999999999999999999999998877653
No 5
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.64 E-value=2.9e-16 Score=117.10 Aligned_cols=78 Identities=28% Similarity=0.395 Sum_probs=52.9
Q ss_pred CccccCCCCCCCCCCccccccccHHHHHHHHHHHHHHHHHhccCCCCC----CCCcccHHHHHHHHHHHHHHHHHHHHHH
Q 042649 11 SCITQKRGRRVYGDDRDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT----NMNKATIVEDAITYIEKLQMTVKVLSDQ 86 (199)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~----k~dk~sil~~ai~yi~~L~~~~~~l~~~ 86 (199)
.|.+.....+....+...+.+|+.+||+||++||+.|..|++|||++. |++|++||.+||+||++||.+++.|+..
T Consensus 10 ~~~~t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 10 CIFPTESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343333333334455667889999999999999999999999999764 7889999999999999999999999876
Q ss_pred HH
Q 042649 87 LL 88 (199)
Q Consensus 87 ~~ 88 (199)
..
T Consensus 90 ~~ 91 (118)
T 4ati_A 90 EN 91 (118)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=105.75 Aligned_cols=60 Identities=22% Similarity=0.401 Sum_probs=54.3
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCC-CCCCcccHHHHHHHHHHHHHHHHHHH
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPII-TNMNKATIVEDAITYIEKLQMTVKVL 83 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~-~k~dk~sil~~ai~yi~~L~~~~~~l 83 (199)
.+...+.+|+.+||+||++||+.|..|++|||.. .|+||++||..||+||+.||.++.=|
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 3567788999999999999999999999999964 59999999999999999999987654
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=1.3e-16 Score=107.03 Aligned_cols=55 Identities=27% Similarity=0.497 Sum_probs=50.2
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCCCC------CCCcccHHHHHHHHHHHHHHHH
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPIIT------NMNKATIVEDAITYIEKLQMTV 80 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~~------k~dk~sil~~ai~yi~~L~~~~ 80 (199)
...+.+|+.+||+||++||+.|..|++|||.+. |+||++||.+||+||+.||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 446778999999999999999999999999765 7899999999999999999764
No 8
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.8e-15 Score=105.39 Aligned_cols=64 Identities=23% Similarity=0.319 Sum_probs=58.6
Q ss_pred cccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 29 KSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 29 ~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
+..|+..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+++.+.|..+++.+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999965 58899999999999999999999999999887653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=2.1e-16 Score=105.36 Aligned_cols=52 Identities=38% Similarity=0.466 Sum_probs=47.5
Q ss_pred cccccHHHHHHHHHHHHHHHHHhccCCCC-------CCCCcccHHHHHHHHHHHHHHHH
Q 042649 29 KSKNLTAERRRREKLSNRLLTLRSLVPII-------TNMNKATIVEDAITYIEKLQMTV 80 (199)
Q Consensus 29 ~~~h~~~Er~RR~~~~~~~~~LrslvP~~-------~k~dk~sil~~ai~yi~~L~~~~ 80 (199)
+.+|+.+||+||++||..|..|++|||+. .+.+||+||+.||+||+.||+++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999954 46779999999999999999865
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.53 E-value=1.6e-15 Score=103.70 Aligned_cols=54 Identities=26% Similarity=0.411 Sum_probs=49.6
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCCCC----CCCCcccHHHHHHHHHHHHHH
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVPII----TNMNKATIVEDAITYIEKLQM 78 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~----~k~dk~sil~~ai~yi~~L~~ 78 (199)
....+.+|+.+||+||++||+.|..|++|||.+ .|+||++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 456788999999999999999999999999965 699999999999999999974
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.51 E-value=6.4e-15 Score=101.55 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=47.7
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHhccCCC---CCCC-CcccHHHHHHHHHHHHHHHHHHHH
Q 042649 26 RDFKSKNLTAERRRREKLSNRLLTLRSLVPI---ITNM-NKATIVEDAITYIEKLQMTVKVLS 84 (199)
Q Consensus 26 ~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~---~~k~-dk~sil~~ai~yi~~L~~~~~~l~ 84 (199)
...+..|+..||+||..||+.|..|+.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999999994 3355 688899999999999999998753
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.35 E-value=4.2e-13 Score=90.45 Aligned_cols=57 Identities=30% Similarity=0.395 Sum_probs=51.2
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCCCC--CCCCcccHHHHHHHHHHHHHHHH
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVPII--TNMNKATIVEDAITYIEKLQMTV 80 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP~~--~k~dk~sil~~ai~yi~~L~~~~ 80 (199)
.+...+..|+..||+|+..||+.|..||.+||.. .|++|+.||..||+||..|++.+
T Consensus 8 ~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999964 58999999999999999999765
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.31 E-value=1.7e-12 Score=85.41 Aligned_cols=54 Identities=28% Similarity=0.320 Sum_probs=48.8
Q ss_pred ccccccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHHH
Q 042649 28 FKSKNLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTVK 81 (199)
Q Consensus 28 ~~~~h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 81 (199)
.+..|+..||+|+..||+.|..||.+||.. .|.+|+.+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999965 389999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.04 E-value=1.4e-10 Score=100.87 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=42.5
Q ss_pred CccccccccHHHHHHHHHHHHHHHHHhccCC-CCCCCCcccHHHHHHHHHHHHHHH
Q 042649 25 DRDFKSKNLTAERRRREKLSNRLLTLRSLVP-IITNMNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 25 ~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP-~~~k~dk~sil~~ai~yi~~L~~~ 79 (199)
+...+.+|+.+||+||++||..|..|++||| +..|+||++||..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 9 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 4567788999999999999999999999999 556999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.89 E-value=8.2e-10 Score=96.95 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=50.2
Q ss_pred CCccccccccHHHHHHHHHHHHHHHHHhccCC----CCCCCCcccHHHHHHHHHHHHHHH
Q 042649 24 DDRDFKSKNLTAERRRREKLSNRLLTLRSLVP----IITNMNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 24 ~~~~~~~~h~~~Er~RR~~~~~~~~~LrslvP----~~~k~dk~sil~~ai~yi~~L~~~ 79 (199)
.....+.+|+.+||+||++||..|..|++||| ...|+||++||..||.||+.|+..
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34667889999999999999999999999999 567999999999999999999854
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.83 E-value=5.7e-10 Score=74.44 Aligned_cols=47 Identities=26% Similarity=0.389 Sum_probs=42.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHH
Q 042649 32 NLTAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQM 78 (199)
Q Consensus 32 h~~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~ 78 (199)
-+..||+|+..||+.|..||.+||.. .|++|+.+|.-||+||..||.
T Consensus 18 a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 18 AAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34678999999999999999999965 489999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.61 E-value=7.7e-08 Score=66.57 Aligned_cols=50 Identities=30% Similarity=0.418 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhccCCCC----CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 40 REKLSNRLLTLRSLVPII----TNMNKATIVEDAITYIEKLQMTVKVLSDQLLE 89 (199)
Q Consensus 40 R~~~~~~~~~LrslvP~~----~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~ 89 (199)
|..||++|..|..|||.. .|.+|.+||..|++||+.||+..+.+.+....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999964 37899999999999999999988888776654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.37 E-value=5.6e-07 Score=64.10 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC---CCCCcccHHHHHHHHHHHHHHHHH
Q 042649 34 TAERRRREKLSNRLLTLRSLVPII---TNMNKATIVEDAITYIEKLQMTVK 81 (199)
Q Consensus 34 ~~Er~RR~~~~~~~~~LrslvP~~---~k~dk~sil~~ai~yi~~L~~~~~ 81 (199)
..||.|-..+|+.|..||..||.. .|.+|..+|.-||+||..|++-++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 346888899999999999999964 489999999999999999998774
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.89 E-value=0.00027 Score=48.62 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=56.2
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+.|.|.|+++||++.+|..+|-+.|..|.+.+..+..+.+...+.+++.+ ....++|.++|..+-
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~ 70 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFG 70 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHH
Confidence 577999999999999999999999999999999998888777777777533 457888998887653
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.40 E-value=0.0011 Score=52.08 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=54.7
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+.|.|.|++++|++..|..+|.++|+.|+.++..+..|.++..+.+.... ...++|++.|..+.
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~ 70 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLG 70 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888887777421 35677887777654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.17 E-value=0.0031 Score=49.83 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=51.1
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCC-cccCHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYS-YKIEAEQVKELLQE 194 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~-~~~s~~~lk~~L~~ 194 (199)
.+.|.|.|++++|++..|..+|.++|+.|+.++..+..|.++-.+.+..... .....++|+++|..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~ 71 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPG 71 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTT
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999998888877777763221 00114566665543
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.89 E-value=0.0038 Score=49.31 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC------CeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK------GATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~------~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..+.|.|.|++++|++..|-..|-++|+.|.+++..+.+ +.++..+.+... .... ++|+++|..+.
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence 457899999999999999999999999999999999876 555555555533 2345 88888887654
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.82 E-value=0.013 Score=39.35 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=40.8
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEec
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNG 177 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~ 177 (199)
.+.|+|.+.+++|+|.+|..+|.+.|+.|.+.+....++.....+.++.
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 4678899999999999999999999999999999887764444455553
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.59 E-value=0.019 Score=44.88 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=53.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--------CeEEEEEEEeccCCcccCHHHHHHHHHHHHh
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--------GATLISSCLNGVYSYKIEAEQVKELLQEIIK 197 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--------~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i~ 197 (199)
..+.|.|.|++++|++..|.+.|.++|+.|..+...+.+ +.++..+.+... ...+.++|+++|..+..
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998764 344444555532 35678999999886543
No 25
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=96.32 E-value=0.039 Score=46.76 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=54.4
Q ss_pred CceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 127 GCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 127 ~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
...+.+.+.|++++|+...|...|-++|..|+.++-... .|.++-.+.+.. .+...+.++|+++|..+
T Consensus 20 ~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~-~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 20 MRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA-DTLPFDLDGFREAFTPI 89 (302)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG-GGSSSCHHHHHHHHHHH
T ss_pred cceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec-CCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999998875 576665555553 22246889999888654
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=96.12 E-value=0.023 Score=49.36 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=55.6
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..+.|.+.|++++|+...|...|-++|..|+.++-...+|.++-.+.+...+ ...+.++|.++|..+
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~-~~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA-DVADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH-HHHTSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC-CcCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999888777776422 223567888888754
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=96.03 E-value=0.047 Score=45.88 Aligned_cols=65 Identities=6% Similarity=-0.009 Sum_probs=53.2
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
.+.|.+.|++++|+...|...|-++|+.|+.++..+ ..|.++-.+.+...+ ..+.++|+++|..+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAER 74 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHH
Confidence 578999999999999999999999999999999884 456666555555432 47889999988764
No 28
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=95.95 E-value=0.053 Score=45.59 Aligned_cols=67 Identities=9% Similarity=0.111 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..+.|.+.|++++|+...|...|-++|+.|+.++..+ ..|.++-.+.+.. .....+.++|+++|..+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA-AAKVIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE-SSCCCCHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc-CCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999863 4566665555653 22347889999988754
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=95.54 E-value=0.08 Score=44.58 Aligned_cols=68 Identities=4% Similarity=0.173 Sum_probs=52.1
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEecc-CCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGV-YSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~-~~~~~s~~~lk~~L~~~ 195 (199)
..+.+.+.|++++|+...|...|-++|+.|+.++-.+ ..|.++-.+.+... .....+.++|+++|..+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999884 45666655555532 01246788999888653
No 30
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.73 E-value=0.087 Score=39.64 Aligned_cols=35 Identities=9% Similarity=0.327 Sum_probs=33.0
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
.|+|.|.+++|++.+|+++|.+.++.+..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 48899999999999999999999999999999776
No 31
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=94.46 E-value=0.2 Score=41.94 Aligned_cols=65 Identities=2% Similarity=0.054 Sum_probs=48.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEe--eCCeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTT--FKGATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~--~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..+.+.+.|++++|+...|...|-++|..|+.++..+ ..|.++-.+.+.... .+.++|+++|..+
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~---~~~~~L~~~f~~l 72 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPV---AGVNDFNSAFGKV 72 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC------CHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCC---CCHHHHHHHHHHH
Confidence 4578999999999999999999999999999999863 456666555555322 3445788777654
No 32
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=94.38 E-value=0.09 Score=40.61 Aligned_cols=63 Identities=8% Similarity=0.217 Sum_probs=48.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..|.|...+++|+|.+|...|.+.|+.|.+.++.... +....++.+. ++.-..++|.+.|.++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GDEKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SCHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---ccHHHHHHHHHHHcCC
Confidence 4678888999999999999999999999999998654 4555666666 2334556666666653
No 33
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=93.55 E-value=0.21 Score=40.34 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=43.6
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC-----CeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK-----GATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~-----~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.+.|.|.+.+++|+|.+|+++|-+++..|.+.+..+.. +....+ +++.+ . ..++|-++|.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d--~-~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEG--G-DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECS--S-CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECC--C-CHHHHHHHHhC
Confidence 46788999999999999999999999999999999864 333333 66432 2 77777777764
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=92.87 E-value=0.15 Score=39.34 Aligned_cols=63 Identities=13% Similarity=0.275 Sum_probs=48.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..|.|...+++|+|.+|...|...|+.|.+.++.... +....++.+.. +.-..++|.+.|.++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~---d~~~leql~kQL~Kl 69 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG---PDEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE---CHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec---cHHHHHHHHHHhcCC
Confidence 4678888999999999999999999999999998654 55566667762 334556666666654
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=90.15 E-value=0.66 Score=36.67 Aligned_cols=64 Identities=17% Similarity=0.303 Sum_probs=49.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeC--CeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFK--GATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~--~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
..|.|.-+++||.|.+|...|...|+.|.+.++.... +....++.+.. +.-..++|.+.|.+++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g---~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG---DDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE---CTTHHHHHHHHHTTST
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC---CHHHHHHHHHHhcCcC
Confidence 4577788899999999999999999999999997543 45556667763 2456778877776643
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=87.63 E-value=5.1 Score=29.08 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=38.1
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 132 IRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 132 I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
|-+.-+++||.+.+++++|.+.|+.|...-.+..++.....+..+ +.+...++|++
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~-------d~~~A~~~L~~ 130 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPS-------NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEES-------CHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeC-------CHHHHHHHHHH
Confidence 344557899999999999999999997655443445444444332 55666666654
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=82.02 E-value=12 Score=26.97 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=30.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG 167 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~ 167 (199)
.|.|.-++++|.+.+|...|.+.|+.|.........+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3556668899999999999999999999887765444
No 38
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=75.11 E-value=10 Score=31.91 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=45.2
Q ss_pred eEEEEEEec-CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeE-EEEEEEeccCCcccCHHHHHHHHHH
Q 042649 129 KLWIRIISK-KKRSRITKFLEAMASHGFELSDTNVTTFKGAT-LISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 129 ~~~I~I~c~-~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v-~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
...|-+.-+ +++|.|.++|..|...|+.+....+-+..+.. -|.|.+..++ ...-..+.++|..
T Consensus 201 kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg--~~~d~~v~~aL~~ 266 (313)
T 3mwb_A 201 KTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADG--HATDSRVADALAG 266 (313)
T ss_dssp EEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEES--CTTSHHHHHHHHH
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeC--CCCcHHHHHHHHH
Confidence 444555554 78999999999999999999999999865543 3556666432 2344556666654
No 39
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=74.97 E-value=14 Score=30.53 Aligned_cols=62 Identities=13% Similarity=0.109 Sum_probs=44.7
Q ss_pred EEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 131 WIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 131 ~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
.|-+.-++++|.|.++|..|...|+.+....+-+..+. .-|.|.++.++ ...-..+.++|..
T Consensus 202 sl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg--~~~d~~v~~aL~~ 264 (283)
T 2qmx_A 202 SIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIG--HREDQNVHNALEN 264 (283)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEES--CTTSHHHHHHHHH
T ss_pred EEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEec--CCCcHHHHHHHHH
Confidence 34444468899999999999999999999999987654 34566666432 2333566666655
No 40
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=74.96 E-value=31 Score=29.13 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE-EEEEEeccCCcccCHHHHHHHHHHH
Q 042649 138 KKRSRITKFLEAMASHGFELSDTNVTTFKGATL-ISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 138 ~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~-~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
++||.|.++|..|...|+......+-+..+... |.|.++.++ ...-..++++|.++
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg--~~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDA--APWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESS--CTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeC--CcCCHHHHHHHHHH
Confidence 579999999999999999999999999877654 667777533 23445677777653
No 41
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=72.07 E-value=11 Score=30.94 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=46.1
Q ss_pred EEEEEEe---cCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 130 LWIRIIS---KKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 130 ~~I~I~c---~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
..|-+.. ++++|.|.++|..|...|+.+....+-+..+. .-|.|.++.+ ...-..+.++|.++
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e---~~~d~~v~~aL~~L 253 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD---SAITTDIKKVIAIL 253 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES---CCSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe---cCCcHHHHHHHHHH
Confidence 3444555 67899999999999999999999999987654 3456667754 23446666666653
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=70.99 E-value=19 Score=26.78 Aligned_cols=61 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred CceEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 127 GCKLWIRIISKK---KRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 127 ~~~~~I~I~c~~---~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+-..|.|.... .+|.+.+++++|.+.|+.|...+ +....+... +.. -..+...++|++.|
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~v--v~~-----~d~~~av~~Lh~~f 164 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVL--IDE-----KYMELATRVLHKAF 164 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEE--EEG-----GGHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEE--EeH-----HHHHHHHHHHHHHh
Confidence 346677777765 79999999999999999998854 444444333 331 13445555565543
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.37 E-value=16 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 36 ERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 36 Er~RR~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
||++|.+...+..+-++ =..--.|+..|+.+++.|+.+...|..
T Consensus 1 Ekr~rrrerNR~AA~rc-------------R~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-------------RNRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666665 123456777777777777777665543
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=63.98 E-value=6.8 Score=24.74 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
-.||..|+.+++.|+..+..+++.
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999887654
No 45
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.93 E-value=12 Score=21.44 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042649 60 MNKATIVEDAITYIEKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 60 ~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~ 90 (199)
+..+.-|+++=+-|..|+.+++.|+.++-++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445679999999999999999999998764
No 46
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=63.17 E-value=8.2 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 042649 71 TYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 71 ~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
.|+.+|+.++++|+....+|+..
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999998888887753
No 47
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=63.09 E-value=19 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=32.2
Q ss_pred eEEEEEEecCC--CCHHHHHHHHHHhCCCeEEEEEEEeeC-CeE
Q 042649 129 KLWIRIISKKK--RSRITKFLEAMASHGFELSDTNVTTFK-GAT 169 (199)
Q Consensus 129 ~~~I~I~c~~~--~gll~~Il~aLeel~L~Vv~a~vs~~~-~~v 169 (199)
.+.|.|.|... ..+...++++|+..++.+.+..+..++ +.+
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~v 51 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNI 51 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCE
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeE
Confidence 47899999864 557889999999999999999965533 434
No 48
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=61.97 E-value=36 Score=25.27 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=35.7
Q ss_pred CceEEEEEEe-cCCCCHHHHHHHHHHhCCCeEEEEEEEee-CCeEEEEEEEe
Q 042649 127 GCKLWIRIIS-KKKRSRITKFLEAMASHGFELSDTNVTTF-KGATLISSCLN 176 (199)
Q Consensus 127 ~~~~~I~I~c-~~~~gll~~Il~aLeel~L~Vv~a~vs~~-~~~v~~t~~ve 176 (199)
.+-..|.|.. +.++|.+.+|+++|.++|+.|.....+.. +|..-.+|++.
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 3567788874 78899999999999999988877655432 34444556665
No 49
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=61.23 E-value=5.9 Score=25.25 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
-.||..|+.+++.|+..+..+.+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999999886543
No 50
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=59.93 E-value=18 Score=20.85 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+.+--+||++|+++-.+|+.-++-+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 55677899999999999888776554
No 51
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=58.36 E-value=46 Score=23.49 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=39.5
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhC---CCeEEEEEEEeeCCeEEEEEEEec
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASH---GFELSDTNVTTFKGATLISSCLNG 177 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel---~L~Vv~a~vs~~~~~v~~t~~ve~ 177 (199)
+.+.++|-....+++...|.++++.+ ++++ ..+-|..|..+-.++.+.+
T Consensus 35 c~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v 86 (109)
T 1rwu_A 35 TPFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINA 86 (109)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECC
T ss_pred CCceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEE
Confidence 46777877788899999999999988 6776 6677778887778887775
No 52
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=56.75 E-value=60 Score=24.33 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=34.5
Q ss_pred cCceEEEEEE-ecCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEe
Q 042649 126 DGCKLWIRII-SKKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLN 176 (199)
Q Consensus 126 ~~~~~~I~I~-c~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve 176 (199)
..+-..|.|. -++++|.+.+|++.|.+.++.|.-...++. ++..-.+|.+.
T Consensus 12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 3456777774 477899999999999999966665554443 22333345555
No 53
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=56.41 E-value=52 Score=24.30 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=36.0
Q ss_pred cCceEEEEEEe-cCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEe
Q 042649 126 DGCKLWIRIIS-KKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLN 176 (199)
Q Consensus 126 ~~~~~~I~I~c-~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve 176 (199)
..+-..|.|.. ++++|.+.+|+.+|.+.|+.|.-...+.. .|..-.+|++.
T Consensus 13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 34566777665 56799999999999999888876654432 33455667776
No 54
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.52 E-value=15 Score=22.69 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042649 71 TYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 71 ~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
.|+..|+.++..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999888876653
No 55
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=52.04 E-value=21 Score=18.72 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=15.7
Q ss_pred CCcccHHHHHHHHHHHHHHH
Q 042649 60 MNKATIVEDAITYIEKLQMT 79 (199)
Q Consensus 60 ~dk~sil~~ai~yi~~L~~~ 79 (199)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999876653
No 56
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=51.08 E-value=28 Score=30.65 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=46.0
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe-EEEEEEEeccCCcccCHHHHHHHHHHH
Q 042649 129 KLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA-TLISSCLNGVYSYKIEAEQVKELLQEI 195 (199)
Q Consensus 129 ~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~-v~~t~~ve~~~~~~~s~~~lk~~L~~~ 195 (199)
...|-+..++++|.|.++|..|...|+.+.+..+-+..+. --|.|.+..+ ...-..+.++|..+
T Consensus 34 KTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e---h~~d~~v~~AL~eL 98 (429)
T 1phz_A 34 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD---KRTKPVLGSIIKSL 98 (429)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC---GGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe---eCCCHHHHHHHHHH
Confidence 3444455577899999999999999999999999987543 3466777754 23444566666543
No 57
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=49.94 E-value=70 Score=23.55 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=39.2
Q ss_pred CceEEEEEEecC---CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 127 GCKLWIRIISKK---KRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 127 ~~~~~I~I~c~~---~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+-..|.|.... .+|.+.+++++|.+.|+.|.-.+ +..-.+ ++.+.. -..+...++|+..+
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vv~~-----~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI--SVIIPA-----EYAEAALRAVHQAF 156 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEG-----GGHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEeH-----HHHHHHHHHHHHHH
Confidence 456677777754 79999999999999999995554 223322 333442 14555666666543
No 58
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=48.43 E-value=63 Score=28.36 Aligned_cols=35 Identities=6% Similarity=0.179 Sum_probs=30.2
Q ss_pred ceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEE
Q 042649 128 CKLWIRIISKKKRSRITKFLEAMASHGFELSDTNV 162 (199)
Q Consensus 128 ~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~v 162 (199)
..+++++...+++|+|.+|-..|-++++.+-+..=
T Consensus 358 ~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q 392 (444)
T 3mtj_A 358 TAYYLRLRAFDRPGVLADITRILADSSISIDAMVQ 392 (444)
T ss_dssp EEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eeeEEEEEecCcccHHHHHHHHHHhcCCceeEEee
Confidence 46899999999999999999999999999876543
No 59
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=46.59 E-value=71 Score=23.91 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=39.9
Q ss_pred CceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 127 GCKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 127 ~~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
.+-..|.|... ..+|++.+++++|.+.|+.|.-.+ +..-.+. +.+.. -..+...++|++.|
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is--~vV~~-----~d~~~Av~~Lh~~F 156 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRIS--VLIRE-----DDLDAAARALHEQF 156 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEEG-----GGHHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEE--EEEeH-----HHHHHHHHHHHHHH
Confidence 35677777775 568999999999999999997754 3333332 33331 24555556666554
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.94 E-value=30 Score=23.29 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
+..||+-|.-||..+++|+.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999887543
No 61
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=45.87 E-value=21 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 042649 70 ITYIEKLQMTVKVLSDQLLE 89 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~ 89 (199)
-.||++|+.++..|+.....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777765543
No 62
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=45.14 E-value=7.5 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~ 91 (199)
-.||..|+.++..|+..+.++.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999988776654
No 63
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=44.20 E-value=1.5e+02 Score=25.34 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=36.9
Q ss_pred CceEEEEEE-ecCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEe
Q 042649 127 GCKLWIRII-SKKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLN 176 (199)
Q Consensus 127 ~~~~~I~I~-c~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve 176 (199)
.+...|.|. .+..+|.+.+|++.|.+.++.|.....++. ++..-.+|++.
T Consensus 262 ~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 262 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred CCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 456778887 577899999999999999998887654333 34455566666
No 64
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=42.38 E-value=90 Score=23.54 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=39.9
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+-..|.|... ..+|++.+++++|.+.++.|.-.+ +..-.+. +.+.. -..+...++|++.|
T Consensus 95 ~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is--~vV~~-----~d~~~Av~aLH~~f 157 (181)
T 3s1t_A 95 HIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRIS--VLCRD-----TELDKAVVALHEAF 157 (181)
T ss_dssp CEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEEG-----GGHHHHHHHHHHHH
T ss_pred CEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEE--EEEeH-----HHHHHHHHHHHHHH
Confidence 4566666654 579999999999999999988777 2333333 33332 24556666676655
No 65
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.51 E-value=27 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
-.|+..|+.+++.|+.+...|.+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777766543
No 66
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=41.21 E-value=65 Score=20.27 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=20.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEE
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATL 170 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~ 170 (199)
++|.|.|.. +-...+.++|.+.. +|..+...+-+.-++
T Consensus 4 a~v~v~~~~--~~~~~~~~~l~~~p-eV~~~~~vtG~~d~l 41 (83)
T 2zbc_A 4 AIVLINTDA--GGEDEVFERLKSMS-EVTEVHVVYGVYDIV 41 (83)
T ss_dssp EEEEEEEST--TCHHHHHHHHTTCT-TEEEEEECSSSCSEE
T ss_pred EEEEEEEcC--CCHHHHHHHHhCCC-CeEEEEEEeccCCEE
Confidence 455666653 22456666666655 566665555333333
No 67
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.67 E-value=32 Score=21.50 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
-.|+..|+.+++.|+.+...|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777665543
No 68
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=37.54 E-value=81 Score=21.73 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=44.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHhccCC--------------------CCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 30 SKNLTAERRRREKLSNRLLTLRSLVP--------------------IIT-NMNKATIVEDAITYIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 30 ~~h~~~Er~RR~~~~~~~~~LrslvP--------------------~~~-k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 88 (199)
-+|..-||+|+ +|..++..|..=+- ..+ ..+-..-|.++..-|..|+..+..++.-+.
T Consensus 8 ~s~LPpeqRkk-kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQRK-RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778887665 78888888776552 211 122344589999999999999999999888
Q ss_pred Hhhhc
Q 042649 89 EMESS 93 (199)
Q Consensus 89 ~~~~~ 93 (199)
+++..
T Consensus 87 e~e~~ 91 (98)
T 2ke4_A 87 EAESR 91 (98)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77644
No 69
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=37.43 E-value=39 Score=22.44 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMESS 93 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~~ 93 (199)
-.|+..|+.+++.|+..+.++...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 359999999999999999876543
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.56 E-value=41 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
-.|+..|+.+++.|+.+...|.+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776665543
No 71
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=34.16 E-value=96 Score=21.34 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042649 66 VEDAITYIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 66 l~~ai~yi~~L~~~~~~l~~~~~ 88 (199)
.+.|=+||..|.++++.|+...-
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~~ 87 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDYL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHHH
Confidence 56788999999999999998763
No 72
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=33.36 E-value=46 Score=16.91 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 042649 64 TIVEDAITYIEKLQMTVK 81 (199)
Q Consensus 64 sil~~ai~yi~~L~~~~~ 81 (199)
|-|-+|-.|+.+|..+++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457788889988888765
No 73
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=32.90 E-value=2.3e+02 Score=24.18 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=44.2
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHH
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQE 194 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~ 194 (199)
..|-+.-.++||++.+|-..|-++++.|..-.+.+.++..+..+-+... . .-.+++.+.|.+
T Consensus 332 ~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~~--~-~~~~~~l~~l~~ 393 (404)
T 1sc6_A 332 RRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEAD--E-DVAEKALQAMKA 393 (404)
T ss_dssp EEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECC--H-HHHHHHHHHHHT
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCCC--C-CCCHHHHHHHhc
Confidence 3344555789999999999999999999999999977766655555521 0 023566666553
No 74
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.80 E-value=49 Score=18.63 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042649 73 IEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~ 91 (199)
+++|+.+|++|-.++..|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4556666666665555443
No 75
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.09 E-value=1.2e+02 Score=20.47 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042649 40 REKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLLEMES 92 (199)
Q Consensus 40 R~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~~~~~ 92 (199)
|++..+++..|+.=+ ..=|..=+.-|+.|+..+..++..+..++.
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778888999987644 222556666777777787777777766543
No 76
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=31.92 E-value=1.9e+02 Score=24.72 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=39.0
Q ss_pred ceEEEEEEec---CCCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 128 CKLWIRIISK---KKRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 128 ~~~~I~I~c~---~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
+-..|.|... ..+|++.+++++|.+.++.|.-.+ +....+. +.+.. -..+...++|++.|
T Consensus 343 ~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is--~vV~~-----~d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 343 QVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRIS--VLIRE-----DDLDAAARALHEQF 405 (421)
T ss_dssp CEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEEE--EEEEG-----GGHHHHHHHHHHHT
T ss_pred CeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEE--EEEeH-----HHHHHHHHHHHHHH
Confidence 3455677665 578999999999999999997443 3344333 33331 14566666666654
No 77
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.61 E-value=83 Score=21.43 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=26.4
Q ss_pred eEEEEEEec-C-----CCCHHHHHHHHHHhCCCeEEEEEEEeeC
Q 042649 129 KLWIRIISK-K-----KRSRITKFLEAMASHGFELSDTNVTTFK 166 (199)
Q Consensus 129 ~~~I~I~c~-~-----~~gll~~Il~aLeel~L~Vv~a~vs~~~ 166 (199)
.++|.++.. . ...++.++++.|..+| +|+.+.+....
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 555666432 1 2347899999999999 89988877633
No 78
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=31.26 E-value=43 Score=17.15 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042649 72 YIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 72 yi~~L~~~~~~l~~~~~ 88 (199)
|+-+|+..+-+|+.+..
T Consensus 1 yvyqlkdevgelkgevr 17 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVR 17 (27)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHH
Confidence 34444445544444443
No 79
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.50 E-value=49 Score=21.45 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042649 70 ITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 70 i~yi~~L~~~~~~l~~~~~~~~ 91 (199)
-.|+..|+.+++.|+..+..+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3699999999999999988754
No 80
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.87 E-value=43 Score=17.30 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042649 73 IEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~ 91 (199)
|..|+++...|+.+...++
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 4456666666666665443
No 81
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=27.62 E-value=49 Score=21.71 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=25.2
Q ss_pred ccEEEEEecCceEEEEEEecCCCCHHHHHHHHHHh
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMAS 152 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLee 152 (199)
.+-+|+...++++.+-|+|+++.-+|-.|=-.+++
T Consensus 10 ~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~ 44 (76)
T 2rp4_A 10 AEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKE 44 (76)
T ss_dssp CCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHH
Confidence 35567666667999999999977666666555554
No 82
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=27.38 E-value=1.5e+02 Score=20.37 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=37.0
Q ss_pred ccEEEEEecCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG 167 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~ 167 (199)
.++.|..++.....++|+-.-..=-+-.|.++++++|..|.+..=...|.
T Consensus 36 VnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSIDEVvaG~ 85 (96)
T 2x3d_A 36 VNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSIDEVVSGN 85 (96)
T ss_dssp EEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEEEEEEES
T ss_pred EEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeeeeeecc
Confidence 46777777777766776665444568899999999999999888444444
No 83
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.31 E-value=71 Score=17.60 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 042649 74 EKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 74 ~~L~~~~~~l~~~~~~~~ 91 (199)
++|+.+|++|-.++..++
T Consensus 3 nQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHH
Confidence 456666666655555443
No 84
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.41 E-value=82 Score=19.30 Aligned_cols=27 Identities=11% Similarity=0.100 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042649 65 IVEDAITYIEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 65 il~~ai~yi~~L~~~~~~l~~~~~~~~ 91 (199)
.|++.++-+..|..++.+|+.+...++
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888887654
No 85
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=26.10 E-value=1.6e+02 Score=20.27 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=37.2
Q ss_pred ccEEEEEecCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCC
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKG 167 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~ 167 (199)
.++.|..++.....++|+-.-..--+-.|.++++++|..|.+..=...|.
T Consensus 37 VnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSIDEVvaG~ 86 (97)
T 2raq_A 37 VNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVDEVVAGR 86 (97)
T ss_dssp EEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEEEEEEES
T ss_pred EEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeeeeeecc
Confidence 56777777777777777666544568899999999999999888434444
No 86
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=26.06 E-value=77 Score=17.46 Aligned_cols=19 Identities=5% Similarity=0.198 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042649 73 IEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~ 91 (199)
+.+|+.+|++|-.++..++
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 3456666666666665544
No 87
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=25.95 E-value=2.6e+02 Score=24.66 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=37.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEee--CCeEEEEEEEe
Q 042649 130 LWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTF--KGATLISSCLN 176 (199)
Q Consensus 130 ~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~--~~~v~~t~~ve 176 (199)
..+-+.-.++||.+..|...|-++++.|-+.++... ++.-+..+.+.
T Consensus 455 ~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd 503 (529)
T 1ygy_A 455 INLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD 503 (529)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred cEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC
Confidence 344456678999999999999999999999999985 45555555554
No 88
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=25.90 E-value=54 Score=20.21 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC
Q 042649 34 TAERRRREKLSNRLLTLRSLVPIIT 58 (199)
Q Consensus 34 ~~Er~RR~~~~~~~~~LrslvP~~~ 58 (199)
.++|-+|...++-+.+|.++-|+..
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 5788889999999999999999854
No 89
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.67 E-value=1.8e+02 Score=20.85 Aligned_cols=54 Identities=17% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Q 042649 35 AERRRREKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLSDQLL 88 (199)
Q Consensus 35 ~Er~RR~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~~~~~ 88 (199)
.|++==++++++++.++.=++.....+.+.++.+--+-|..|..+++.|.....
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~ 60 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHS 60 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556788999999988888777788888888888888888888888887765
No 90
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=24.24 E-value=1.8e+02 Score=22.13 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=37.1
Q ss_pred ccEEEEEecCceEEEEEEecCC------CCHHHHHHHHHHhCCCeEEEEEEEee
Q 042649 118 EKVEVTNVDGCKLWIRIISKKK------RSRITKFLEAMASHGFELSDTNVTTF 165 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~------~gll~~Il~aLeel~L~Vv~a~vs~~ 165 (199)
.+|.+.. .++.+.+.+..... ..-+.++-++|.+.||.+..++|+..
T Consensus 101 l~V~l~~-~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 101 VHISLKL-DDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp EEEEEEE-ETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred EEEEEEE-ECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 4566654 56789999998874 33477889999999999999999864
No 91
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=24.17 E-value=35 Score=26.78 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Q 042649 40 REKLSNRLLTLRSLVPIITNMNKATIVEDAITYIEKLQMTVKVLS 84 (199)
Q Consensus 40 R~~~~~~~~~LrslvP~~~k~dk~sil~~ai~yi~~L~~~~~~l~ 84 (199)
|..++.....|+.|.-. .-.....++.+|++|++.|-+-...|+
T Consensus 53 ~~Dl~~F~~QL~qL~~~-~i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKD-DISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888887732 223456789999999999877655443
No 92
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=23.59 E-value=2.3e+02 Score=21.13 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=35.2
Q ss_pred CceEEEEEEe-cCCCCHHHHHHHHHHhCCCeEEEEEEEee---CCeEEEEEEEe
Q 042649 127 GCKLWIRIIS-KKKRSRITKFLEAMASHGFELSDTNVTTF---KGATLISSCLN 176 (199)
Q Consensus 127 ~~~~~I~I~c-~~~~gll~~Il~aLeel~L~Vv~a~vs~~---~~~v~~t~~ve 176 (199)
.+...|.|.. +..+|.+.+|+.+|.+.++.|.-..-+.. +|..-.+|++.
T Consensus 14 ~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 14 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 3455666543 56799999999999999988876654322 45555667776
No 93
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Probab=23.56 E-value=1.1e+02 Score=22.84 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 042649 65 IVEDAITYIEKLQMTVKVLSDQLLEMESSSE 95 (199)
Q Consensus 65 il~~ai~yi~~L~~~~~~l~~~~~~~~~~~~ 95 (199)
.+.++-+|++..+.++++|+++++.+++..+
T Consensus 96 ~~~~a~~~~~~s~~ri~~lekeL~~i~~~~P 126 (160)
T 2cly_B 96 DVKSCAEFLTQSKTRIQEYEKELEKMRNIIP 126 (160)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788899999999999999999999887654
No 94
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.55 E-value=58 Score=18.31 Aligned_cols=17 Identities=12% Similarity=0.390 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 042649 74 EKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 74 ~~L~~~~~~l~~~~~~~ 90 (199)
++|+.+|++|..++..|
T Consensus 4 nQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH
Confidence 34455555554444433
No 95
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.48 E-value=92 Score=17.27 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042649 73 IEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~ 91 (199)
+.+|+.+|++|-.++..|+
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 3456666666666665544
No 96
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.05 E-value=43 Score=19.41 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhc
Q 042649 41 EKLSNRLLTLRS 52 (199)
Q Consensus 41 ~~~~~~~~~Lrs 52 (199)
..|..+|.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999986
No 97
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=21.92 E-value=3.5e+02 Score=22.52 Aligned_cols=65 Identities=8% Similarity=-0.003 Sum_probs=47.4
Q ss_pred eEEEEEEecC-CCCHHHHHHHHHHhCCCeEEEEEEEeeCCeEEEEEEEeccCCcccCHHHHHHHHHHHH
Q 042649 129 KLWIRIISKK-KRSRITKFLEAMASHGFELSDTNVTTFKGATLISSCLNGVYSYKIEAEQVKELLQEII 196 (199)
Q Consensus 129 ~~~I~I~c~~-~~gll~~Il~aLeel~L~Vv~a~vs~~~~~v~~t~~ve~~~~~~~s~~~lk~~L~~~i 196 (199)
...+.+...+ .++++.+|...|.++|+.+......+....+-.-+++.+.. .+..+++++|.++.
T Consensus 101 ~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~---~~~~~l~~~l~~l~ 166 (415)
T 3p96_A 101 THTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPP---GADEALRTALNRVS 166 (415)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCT---TCHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCC---CCHHHHHHHHHHHh
Confidence 4667777777 78899999999999999998888777444444446665432 46778888777654
No 98
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.68 E-value=1e+02 Score=17.01 Aligned_cols=19 Identities=11% Similarity=0.298 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 042649 73 IEKLQMTVKVLSDQLLEME 91 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~~ 91 (199)
+.+|+.+|++|-.++..++
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 3456666666655555443
No 99
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=21.35 E-value=1.8e+02 Score=20.18 Aligned_cols=51 Identities=8% Similarity=0.065 Sum_probs=36.3
Q ss_pred ccEEEEEecCceEEEEEEecCCCCHHHHHHHHHHhCCCeEEEEEEEeeCCe
Q 042649 118 EKVEVTNVDGCKLWIRIISKKKRSRITKFLEAMASHGFELSDTNVTTFKGA 168 (199)
Q Consensus 118 ~~V~V~~~~~~~~~I~I~c~~~~gll~~Il~aLeel~L~Vv~a~vs~~~~~ 168 (199)
.++.|..++.....++|+-.-..--+-.|.++++++|..|.+..=...|..
T Consensus 37 VnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSIDEVvaG~~ 87 (100)
T 3bpd_A 37 VNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVDEVVAGKI 87 (100)
T ss_dssp EEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEEEEEEESS
T ss_pred EEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeeeeeeecce
Confidence 467777777766666666553334588999999999999999883344443
No 100
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.10 E-value=1.1e+02 Score=16.34 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 042649 73 IEKLQMTVKVLSDQLLEM 90 (199)
Q Consensus 73 i~~L~~~~~~l~~~~~~~ 90 (199)
|..|++.+..|+++...+
T Consensus 4 iaalkqeiaalkkeiaal 21 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAAL 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556667777777766554
No 101
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.60 E-value=67 Score=17.74 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042649 75 KLQMTVKVLSDQLLEME 91 (199)
Q Consensus 75 ~L~~~~~~l~~~~~~~~ 91 (199)
+|+.+|++|-.+...++
T Consensus 4 QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 45556666555555443
Done!