BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042650
         (81 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DHX|B Chain B, Eny2:ganp Complex
 pdb|4DHX|C Chain C, Eny2:ganp Complex
 pdb|4DHX|E Chain E, Eny2:ganp Complex
 pdb|4DHX|F Chain F, Eny2:ganp Complex
          Length = 101

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 55/81 (67%)

Query: 1   MIESGXXXXXXXXXXXXXIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASV 60
           +IE+G             IECGW+D++K+ C+   ++KG  +VTVDDLV  ITPKGRA V
Sbjct: 20  LIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALV 79

Query: 61  PDPVKAELLQRIRSFLASTAT 81
           PD VK ELLQRIR+FLA  A+
Sbjct: 80  PDSVKKELLQRIRTFLAQHAS 100


>pdb|3FWB|C Chain C, Sac3:sus1:cdc31 Complex
 pdb|3FWC|C Chain C, Sac3:sus1:cdc31 Complex
 pdb|3FWC|D Chain D, Sac3:sus1:cdc31 Complex
 pdb|3FWC|G Chain G, Sac3:sus1:cdc31 Complex
 pdb|3FWC|H Chain H, Sac3:sus1:cdc31 Complex
 pdb|3FWC|K Chain K, Sac3:sus1:cdc31 Complex
 pdb|3FWC|L Chain L, Sac3:sus1:cdc31 Complex
 pdb|3FWC|O Chain O, Sac3:sus1:cdc31 Complex
 pdb|3FWC|P Chain P, Sac3:sus1:cdc31 Complex
 pdb|3KIK|A Chain A, Sgf11:sus1 Complex
 pdb|3KIK|B Chain B, Sgf11:sus1 Complex
 pdb|3KIK|C Chain C, Sgf11:sus1 Complex
 pdb|3KIK|D Chain D, Sgf11:sus1 Complex
 pdb|3KJL|A Chain A, Sgf11:sus1 Complex
 pdb|3KJL|B Chain B, Sgf11:sus1 Complex
 pdb|3KJL|C Chain C, Sgf11:sus1 Complex
 pdb|3KJL|D Chain D, Sgf11:sus1 Complex
 pdb|3MHH|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
 pdb|3MHS|B Chain B, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
          BOUND Ubiquitin Aldehyde
 pdb|3M99|C Chain C, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
 pdb|4FIP|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
          Delta-Znf)SUS1SGF73 Dub Module
 pdb|4FIP|F Chain F, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
          Delta-Znf)SUS1SGF73 Dub Module
 pdb|4FJC|B Chain B, Structure Of The Saga Ubp8SGF11(1-72,
          Delta-Znf)SUS1SGF73 DUB Module
 pdb|4FJC|F Chain F, Structure Of The Saga Ubp8SGF11(1-72,
          Delta-Znf)SUS1SGF73 DUB Module
 pdb|4FK5|B Chain B, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB
          MODULE
          Length = 96

 Score = 35.8 bits (81), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 1  MIESGXXXXXXXXXXXXXIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASV 60
          ++ESG             ++ GW D++K L ++        N T   ++  + PK    V
Sbjct: 16 LVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNINESTNFT--QILSTVEPKALEMV 73

Query: 61 PDPVKAELLQRIRSFL 76
           D  +  +L++IR FL
Sbjct: 74 SDSTRETVLKQIREFL 89


>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
 pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
           Cerevisiae
          Length = 787

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 23  WRDEMKSLCRAYTRKKGRNNVTV 45
           W+DE+K +C+ + R KGR N T+
Sbjct: 230 WQDELKEVCQRH-RSKGRRNNTI 251


>pdb|3D5L|A Chain A, Crystal Structure Of Regulatory Protein Recx
 pdb|3D5L|B Chain B, Crystal Structure Of Regulatory Protein Recx
          Length = 221

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 30  LCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRS 74
           + R + R+KG     +DD +   TP+ +A +   +  +L +R R+
Sbjct: 131 IIRQHLRQKGIGESDIDDALTQFTPEVQAELAKKLALKLFRRYRN 175


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,804,071
Number of Sequences: 62578
Number of extensions: 52005
Number of successful extensions: 157
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 5
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)