Query 042650
Match_columns 81
No_of_seqs 100 out of 144
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 14:20:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhx_B Enhancer of yellow 2 tr 100.0 2.8E-39 9.7E-44 208.1 9.2 81 1-81 20-100 (101)
2 3mhs_B Protein SUS1; multi-pro 100.0 2.7E-37 9.3E-42 197.3 9.1 77 1-79 16-92 (96)
3 4dhx_B Enhancer of yellow 2 tr 87.7 1.2 4E-05 27.8 4.9 32 8-39 10-41 (101)
4 3mhs_B Protein SUS1; multi-pro 87.4 1.2 3.9E-05 27.6 4.7 32 8-39 6-37 (96)
5 3kxe_C Antitoxin protein PARD- 86.5 0.65 2.2E-05 28.2 3.2 56 2-57 22-81 (88)
6 4hyz_A Uncharacterized protein 85.5 1.8 6.2E-05 26.8 5.0 46 25-73 14-59 (114)
7 3onj_A T-snare VTI1; helix, HA 83.6 1.4 4.8E-05 26.9 3.7 33 44-76 45-78 (97)
8 2k9m_A RNA polymerase sigma fa 77.4 2.8 9.6E-05 26.8 3.7 59 10-75 5-66 (130)
9 2qyw_A Vesicle transport throu 75.4 11 0.00039 22.9 7.0 48 25-77 45-92 (102)
10 2do1_A Nuclear protein HCC-1; 75.4 3.6 0.00012 23.0 3.3 38 40-79 10-47 (55)
11 2k9l_A RNA polymerase sigma fa 74.8 4.2 0.00014 23.5 3.7 58 11-75 15-75 (76)
12 1vcs_A Vesicle transport throu 74.2 2.3 8E-05 26.1 2.6 32 44-76 49-80 (102)
13 4ets_A Ferric uptake regulatio 72.2 12 0.0004 24.2 5.8 62 6-68 12-76 (162)
14 3eyy_A Putative iron uptake re 71.4 5.8 0.0002 25.1 4.1 54 13-68 5-59 (145)
15 3eir_A Putative ATP/GTP bindin 70.7 10 0.00035 27.3 5.6 42 32-74 198-239 (281)
16 2l09_A ASR4154 protein; proto- 69.7 6 0.00021 22.7 3.5 28 24-51 21-48 (62)
17 2kru_A Light-independent proto 68.7 6.5 0.00022 22.6 3.5 28 24-51 22-49 (63)
18 2wzk_A Cullin-5, CUL-5; UBL co 67.9 5.2 0.00018 29.3 3.7 56 20-76 16-73 (391)
19 1q1v_A DEK protein; winged-hel 67.4 15 0.00052 21.1 5.5 54 23-78 13-68 (70)
20 1zrj_A E1B-55KDA-associated pr 65.5 4.9 0.00017 22.0 2.4 39 40-80 10-48 (50)
21 3ppb_A Putative TETR family tr 65.1 11 0.00038 22.8 4.4 29 24-52 11-39 (195)
22 1sgm_A Putative HTH-type trans 63.2 13 0.00044 22.5 4.4 27 25-51 9-35 (191)
23 1y9i_A Low temperature require 63.0 15 0.00051 25.1 5.0 50 26-78 9-58 (178)
24 2kvu_A MKL/myocardin-like prot 62.9 8.6 0.00029 22.8 3.3 38 40-79 26-63 (75)
25 2dbn_A Hypothetical protein YB 62.7 30 0.001 26.8 7.1 72 8-79 59-153 (461)
26 2lo0_A Uncharacterized protein 62.3 8.4 0.00029 22.9 3.2 31 7-37 43-73 (75)
27 3qkx_A Uncharacterized HTH-typ 62.1 13 0.00044 22.4 4.3 28 25-52 11-38 (188)
28 3lhq_A Acrab operon repressor 62.0 13 0.00045 22.8 4.4 28 25-52 17-44 (220)
29 3f1b_A TETR-like transcription 61.9 13 0.00044 22.7 4.3 29 24-52 16-44 (203)
30 3vpr_A Transcriptional regulat 61.6 14 0.00047 22.7 4.4 27 25-51 6-32 (190)
31 1pb6_A Hypothetical transcript 61.4 13 0.00045 22.9 4.3 29 24-52 20-48 (212)
32 3he0_A Transcriptional regulat 61.2 14 0.00049 22.4 4.4 29 24-52 13-41 (196)
33 3qbm_A TETR transcriptional re 60.9 14 0.0005 22.4 4.4 29 24-52 9-37 (199)
34 3kz9_A SMCR; transcriptional r 60.4 15 0.0005 22.4 4.3 29 24-52 19-47 (206)
35 3dcf_A Transcriptional regulat 60.3 14 0.00048 22.8 4.3 28 24-51 33-60 (218)
36 3b81_A Transcriptional regulat 60.1 15 0.00051 22.5 4.4 29 24-52 13-41 (203)
37 3him_A Probable transcriptiona 59.8 14 0.00049 22.6 4.2 25 26-50 20-44 (211)
38 3dew_A Transcriptional regulat 59.8 11 0.00037 23.0 3.6 29 24-52 10-38 (206)
39 2eh3_A Transcriptional regulat 59.2 16 0.00055 22.2 4.4 29 24-52 4-32 (179)
40 3lwj_A Putative TETR-family tr 59.2 16 0.00055 22.4 4.4 29 24-52 14-42 (202)
41 3col_A Putative transcription 58.8 11 0.00039 22.7 3.6 28 24-51 12-39 (196)
42 2g7s_A Transcriptional regulat 58.4 12 0.0004 22.6 3.6 27 25-51 11-37 (194)
43 2rae_A Transcriptional regulat 58.3 16 0.00055 22.5 4.3 28 24-51 19-46 (207)
44 3bqz_B HTH-type transcriptiona 58.1 11 0.00038 22.9 3.5 28 25-52 5-32 (194)
45 3s5r_A Transcriptional regulat 57.6 16 0.00055 22.6 4.2 29 24-52 12-40 (216)
46 2fq4_A Transcriptional regulat 57.3 18 0.00061 22.3 4.4 28 24-51 14-41 (192)
47 3qqa_A CMER; alpha-helical, he 57.1 18 0.00062 22.3 4.4 28 25-52 22-49 (216)
48 3vp5_A Transcriptional regulat 57.0 17 0.00059 22.6 4.3 29 24-52 14-42 (189)
49 3ccy_A Putative TETR-family tr 56.6 18 0.00061 22.5 4.3 29 24-52 16-44 (203)
50 1tlq_A Hypothetical protein YP 56.5 24 0.00082 24.3 5.1 50 25-77 9-58 (189)
51 2yve_A Transcriptional regulat 56.4 17 0.00058 22.5 4.1 27 25-51 7-33 (185)
52 3knw_A Putative transcriptiona 56.2 19 0.00065 22.1 4.4 29 24-52 16-44 (212)
53 4a64_A Cullin-4B, CUL4B, CUL-4 56.1 24 0.00081 25.3 5.4 57 20-78 11-67 (354)
54 2qtq_A Transcriptional regulat 56.1 19 0.00064 22.1 4.3 29 24-52 18-46 (213)
55 3on2_A Probable transcriptiona 56.0 13 0.00044 22.6 3.5 24 8-31 15-39 (199)
56 2fd5_A Transcriptional regulat 55.7 19 0.00065 21.8 4.3 29 24-52 9-37 (180)
57 3rd3_A Probable transcriptiona 55.7 20 0.00069 21.7 4.4 29 24-52 12-40 (197)
58 3cjd_A Transcriptional regulat 55.6 13 0.00045 23.3 3.6 26 26-51 16-41 (198)
59 3bni_A Putative TETR-family tr 55.4 19 0.00065 23.0 4.4 29 24-52 45-73 (229)
60 3cwr_A Transcriptional regulat 55.3 14 0.00048 22.6 3.6 29 24-52 19-47 (208)
61 2krc_A DNA-directed RNA polyme 55.1 10 0.00036 23.3 2.9 28 28-56 16-43 (99)
62 4eoz_B Cullin-3, CUL-3; E3 ubi 55.1 18 0.00063 26.0 4.6 57 19-77 13-69 (364)
63 1u9p_A PARC; unknown function; 55.0 28 0.00095 22.3 5.0 33 44-76 73-105 (120)
64 2d6y_A Putative TETR family re 54.7 20 0.0007 22.4 4.4 29 24-52 10-38 (202)
65 3on4_A Transcriptional regulat 54.7 15 0.0005 22.2 3.6 28 24-51 12-39 (191)
66 3kkc_A TETR family transcripti 54.6 13 0.00044 22.4 3.3 29 24-52 14-42 (177)
67 2qko_A Possible transcriptiona 54.5 20 0.00067 22.5 4.3 27 25-51 31-57 (215)
68 2ras_A Transcriptional regulat 54.3 20 0.0007 22.2 4.3 29 24-52 13-41 (212)
69 3vib_A MTRR; helix-turn-helix 54.1 21 0.00073 22.2 4.4 28 24-51 12-39 (210)
70 2f07_A YVDT; helix-turn-helix, 54.0 22 0.00074 22.1 4.4 28 24-51 12-39 (197)
71 4ap2_B Cullin-3, CUL-3; ubiqui 53.9 27 0.00092 25.7 5.5 57 19-77 30-86 (410)
72 3bru_A Regulatory protein, TET 53.9 20 0.00067 22.3 4.2 28 24-51 32-59 (222)
73 2ibd_A Possible transcriptiona 53.8 20 0.0007 22.2 4.2 29 24-52 16-44 (204)
74 1zk8_A Transcriptional regulat 53.5 16 0.00054 22.2 3.6 24 26-49 12-35 (183)
75 3f0c_A TETR-molecule A, transc 53.5 21 0.00071 22.1 4.2 29 24-52 13-41 (216)
76 2dg8_A Putative TETR-family tr 53.3 15 0.0005 22.7 3.5 28 24-51 11-38 (193)
77 3dpj_A Transcription regulator 52.6 23 0.00078 21.6 4.3 28 25-52 11-38 (194)
78 2hyt_A TETR-family transcripti 52.5 24 0.00081 21.9 4.4 29 24-52 14-42 (197)
79 2dg7_A Putative transcriptiona 52.5 15 0.0005 22.6 3.4 26 25-50 10-35 (195)
80 3anp_C Transcriptional repress 52.4 22 0.00077 22.0 4.3 28 25-52 12-39 (204)
81 3mvp_A TETR/ACRR transcription 52.3 17 0.00056 22.5 3.6 27 25-51 29-55 (217)
82 3egq_A TETR family transcripti 52.1 13 0.00045 22.3 3.0 29 24-52 6-34 (170)
83 2kvc_A Putative uncharacterize 52.1 21 0.00071 22.3 3.9 44 5-52 26-69 (103)
84 2zcm_A Biofilm operon icaabcd 52.0 24 0.0008 21.6 4.3 27 25-51 10-36 (192)
85 2w53_A Repressor, SMet; antibi 51.9 24 0.00082 22.1 4.4 29 24-52 13-41 (219)
86 3gzi_A Transcriptional regulat 51.7 22 0.00075 22.0 4.1 29 24-52 19-47 (218)
87 2zb9_A Putative transcriptiona 51.6 17 0.00058 22.7 3.6 29 24-52 25-53 (214)
88 2gen_A Probable transcriptiona 51.4 25 0.00086 21.8 4.4 29 24-52 9-37 (197)
89 2lky_A Uncharacterized protein 51.2 18 0.00062 22.9 3.6 44 5-52 28-71 (112)
90 1rfz_A Hypothetical protein AP 50.8 19 0.00064 24.3 3.8 49 27-78 12-60 (168)
91 2fe3_A Peroxide operon regulat 50.8 36 0.0012 21.2 5.1 54 14-68 9-63 (145)
92 2iu5_A DHAS, YCEG, HTH-type dh 50.6 17 0.0006 22.4 3.5 24 27-50 18-41 (195)
93 3nrg_A TETR family transcripti 50.3 18 0.0006 22.4 3.5 25 26-50 17-41 (217)
94 2rnn_A E3 SUMO-protein ligase 50.2 21 0.00071 22.7 3.8 50 4-53 57-112 (114)
95 1rkt_A Protein YFIR; transcrip 50.1 27 0.00092 21.7 4.4 29 24-52 14-42 (205)
96 2xdn_A HTH-type transcriptiona 50.0 27 0.00092 21.7 4.4 27 25-51 14-40 (210)
97 3crj_A Transcription regulator 50.0 27 0.00092 21.8 4.4 29 24-52 16-44 (199)
98 3bhq_A Transcriptional regulat 49.2 28 0.00096 21.7 4.4 29 24-52 14-42 (211)
99 2hku_A A putative transcriptio 49.2 27 0.00093 21.8 4.3 28 24-52 22-49 (215)
100 1ui5_A A-factor receptor homol 49.1 28 0.00095 22.0 4.4 28 24-51 11-38 (215)
101 3rh2_A Hypothetical TETR-like 49.1 18 0.00063 22.5 3.5 27 25-51 6-32 (212)
102 2oi8_A Putative regulatory pro 48.9 26 0.00089 22.4 4.2 29 24-52 18-46 (216)
103 3g7r_A Putative transcriptiona 48.9 28 0.00097 22.0 4.4 29 24-52 37-65 (221)
104 2wui_A MEXZ, transcriptional r 48.7 28 0.00095 21.8 4.3 28 24-51 13-40 (210)
105 2id3_A Putative transcriptiona 48.1 20 0.00069 22.8 3.6 27 25-51 43-69 (225)
106 3bu8_A Telomeric repeat-bindin 48.1 16 0.00056 25.9 3.3 51 2-52 125-180 (235)
107 3ol3_A Putative uncharacterize 47.7 49 0.0017 20.7 6.2 56 4-63 30-86 (107)
108 2of7_A Putative TETR-family tr 47.6 29 0.00098 22.7 4.4 29 24-52 50-78 (260)
109 3c2b_A Transcriptional regulat 47.6 21 0.00073 22.2 3.6 25 26-50 19-43 (221)
110 2o7t_A Transcriptional regulat 47.5 21 0.00071 22.1 3.5 26 7-32 10-36 (199)
111 2nx4_A Transcriptional regulat 47.3 32 0.0011 21.2 4.4 29 24-52 12-40 (194)
112 3jsj_A Putative TETR-family tr 47.0 30 0.001 21.0 4.1 27 24-51 11-37 (190)
113 3aqt_A Bacterial regulatory pr 46.4 20 0.0007 23.2 3.5 27 25-51 49-75 (245)
114 1vi0_A Transcriptional regulat 46.1 23 0.00079 22.2 3.6 25 26-50 12-36 (206)
115 3cdl_A Transcriptional regulat 45.9 33 0.0011 21.3 4.3 28 24-51 11-38 (203)
116 3q0w_A HTH-type transcriptiona 45.5 22 0.00076 22.7 3.5 27 25-51 47-73 (236)
117 4hku_A LMO2814 protein, TETR t 45.4 23 0.00079 21.7 3.5 27 25-51 10-36 (178)
118 3nnr_A Transcriptional regulat 44.9 23 0.00079 22.3 3.5 18 7-24 7-24 (228)
119 3hta_A EBRA repressor; TETR fa 44.9 24 0.00082 22.4 3.5 28 24-51 30-57 (217)
120 2qib_A TETR-family transcripti 44.8 23 0.00079 22.6 3.5 25 26-50 17-41 (231)
121 2fcg_F Cationic, antibacterial 44.8 18 0.00061 17.4 2.1 15 66-80 6-20 (26)
122 2q24_A Putative TETR family tr 44.0 35 0.0012 20.9 4.1 25 25-50 18-42 (194)
123 1ljr_A HGST T2-2, glutathione 43.8 23 0.00078 23.2 3.4 31 45-75 213-243 (244)
124 1jjr_A KU70, thyroid autoantig 42.7 21 0.00073 23.5 3.1 43 35-79 56-98 (151)
125 2i10_A Putative TETR transcrip 42.5 29 0.00098 21.7 3.6 29 24-52 13-41 (202)
126 3bjb_A Probable transcriptiona 42.3 26 0.00088 22.1 3.4 25 8-32 25-50 (207)
127 2hxo_A Putative TETR-family tr 42.2 38 0.0013 22.3 4.4 29 24-52 18-46 (237)
128 2np5_A Transcriptional regulat 41.7 30 0.001 21.6 3.6 28 24-51 11-38 (203)
129 3v6g_A Probable transcriptiona 41.6 43 0.0015 21.2 4.4 29 24-52 16-44 (208)
130 2zcx_A SCO7815, TETR-family tr 41.6 41 0.0014 21.7 4.4 29 24-52 25-53 (231)
131 3pas_A TETR family transcripti 41.4 12 0.00043 22.5 1.7 24 8-31 11-35 (195)
132 2fbq_A Probable transcriptiona 40.8 41 0.0014 21.5 4.2 27 25-51 10-36 (235)
133 1w85_A Pyruvate dehydrogenase 40.8 87 0.003 22.8 6.4 52 12-67 297-358 (368)
134 3mnl_A KSTR, transcriptional r 40.7 12 0.00042 22.9 1.5 17 8-24 23-39 (203)
135 2qwt_A Transcriptional regulat 40.5 42 0.0014 20.7 4.2 16 8-23 16-31 (196)
136 3c07_A Putative TETR-family tr 39.9 43 0.0015 22.4 4.4 27 25-51 44-70 (273)
137 2hyj_A Putative TETR-family tr 39.8 33 0.0011 21.3 3.6 27 25-51 15-41 (200)
138 3bqy_A Putative TETR family tr 39.3 33 0.0011 22.1 3.6 27 25-51 5-31 (209)
139 3o60_A LIN0861 protein; PSI, M 39.2 35 0.0012 21.4 3.7 27 25-51 22-49 (185)
140 1mzb_A Ferric uptake regulatio 39.2 43 0.0015 20.5 4.0 54 15-68 6-60 (136)
141 2rek_A Putative TETR-family tr 39.0 33 0.0011 21.0 3.4 17 7-23 18-34 (199)
142 3fiw_A Putative TETR-family tr 39.0 33 0.0011 22.1 3.6 24 8-31 28-52 (211)
143 2g7l_A TETR-family transcripti 38.9 43 0.0015 22.2 4.2 29 24-52 21-49 (243)
144 2guh_A Putative TETR-family tr 38.3 34 0.0012 21.8 3.5 28 25-52 42-69 (214)
145 3geu_A Intercellular adhesion 38.2 14 0.00048 22.5 1.5 16 9-24 7-22 (189)
146 2xig_A Ferric uptake regulatio 38.2 73 0.0025 19.9 7.3 56 12-68 12-68 (150)
147 1zx4_A P1 PARB, plasmid partit 37.8 41 0.0014 22.8 4.0 38 40-77 81-124 (192)
148 2y2z_A SIM16, SIMR, putative r 37.5 49 0.0017 22.4 4.4 29 24-52 29-57 (267)
149 4aci_A HTH-type transcriptiona 37.4 15 0.0005 22.4 1.5 26 7-32 16-42 (191)
150 2jj7_A Hemolysin II regulatory 36.9 16 0.00055 22.2 1.7 46 7-56 9-62 (186)
151 2iai_A Putative transcriptiona 36.8 20 0.00067 22.9 2.1 25 27-51 35-59 (230)
152 3eup_A Transcriptional regulat 36.7 16 0.00055 22.3 1.7 27 7-33 13-40 (204)
153 1z0x_A Transcriptional regulat 36.3 37 0.0013 21.8 3.5 25 26-50 9-34 (220)
154 3e7q_A Transcriptional regulat 35.8 17 0.00058 22.3 1.7 16 8-23 17-32 (215)
155 3ni7_A Bacterial regulatory pr 35.1 55 0.0019 20.9 4.1 17 8-24 10-26 (213)
156 2opt_A Actii protein; helical 34.9 41 0.0014 22.3 3.6 27 25-51 9-35 (234)
157 2gfn_A HTH-type transcriptiona 34.8 44 0.0015 21.0 3.6 29 24-52 11-39 (209)
158 3nxc_A HTH-type protein SLMA; 34.6 36 0.0012 20.8 3.0 28 24-51 26-54 (212)
159 3kkd_A Transcriptional regulat 34.5 44 0.0015 21.2 3.6 26 25-50 38-63 (237)
160 2hxi_A Putative transcriptiona 34.4 38 0.0013 22.4 3.4 29 24-52 31-59 (241)
161 1h3o_B Transcription initiatio 34.4 51 0.0017 19.3 3.5 33 44-78 10-42 (76)
162 3k9w_A Phosphopantetheine aden 34.2 61 0.0021 21.5 4.3 19 56-74 162-180 (187)
163 1h1j_S THO1 protein; SAP domai 34.1 36 0.0012 18.4 2.6 35 42-78 7-41 (51)
164 3ljl_A Transcriptional regulat 34.1 18 0.00061 21.8 1.5 26 7-32 16-42 (156)
165 3g1o_A Transcriptional regulat 33.7 35 0.0012 22.1 3.0 23 27-49 48-70 (255)
166 1t33_A Putative transcriptiona 33.1 44 0.0015 20.7 3.3 24 8-31 15-38 (224)
167 2pjp_A Selenocysteine-specific 31.6 77 0.0026 19.0 4.2 70 4-80 2-79 (121)
168 2oer_A Probable transcriptiona 31.3 39 0.0013 21.2 2.9 28 25-52 27-54 (214)
169 2l81_A Enhancer of filamentati 31.0 54 0.0018 22.3 3.6 42 13-66 114-157 (176)
170 3lsj_A DEST; transcriptional r 30.2 30 0.001 21.5 2.2 25 27-51 16-41 (220)
171 2pz9_A Putative regulatory pro 29.6 23 0.00079 22.5 1.5 24 26-49 34-57 (226)
172 2a0u_A Initiation factor 2B; S 28.9 1.2E+02 0.0042 22.4 5.6 57 22-79 92-152 (383)
173 4fbj_A CIF, hypothetical prote 28.3 71 0.0024 22.8 3.9 41 32-73 167-207 (261)
174 3frq_A Repressor protein MPHR( 28.2 26 0.00088 21.5 1.5 26 7-32 10-36 (195)
175 2g3b_A Putative TETR-family tr 28.1 27 0.00092 22.0 1.7 25 7-31 5-30 (208)
176 1hc8_A Ribosomal protein L11; 27.6 74 0.0025 18.4 3.4 33 25-59 38-70 (76)
177 3loc_A HTH-type transcriptiona 27.5 29 0.00098 21.2 1.7 27 25-51 21-47 (212)
178 2kna_A Baculoviral IAP repeat- 27.2 1.1E+02 0.0037 18.5 4.6 49 9-57 25-74 (104)
179 3zta_A MTR, anti-sigma-factor 27.1 1.1E+02 0.0038 19.4 4.4 47 27-73 37-87 (146)
180 2id6_A Transcriptional regulat 26.9 29 0.001 21.5 1.7 27 6-32 6-33 (202)
181 2xpw_A Tetracycline repressor 26.6 29 0.001 22.3 1.7 18 7-24 5-22 (207)
182 3n0u_A Probable N-glycosylase/ 26.4 1.5E+02 0.0053 20.0 6.0 62 7-70 24-92 (219)
183 3npi_A TETR family regulatory 26.3 30 0.001 22.3 1.7 16 8-23 21-36 (251)
184 3h4s_E KCBP interacting Ca2+-b 26.2 1.1E+02 0.0036 18.1 4.3 53 17-70 32-84 (135)
185 3a11_A Translation initiation 26.2 1.5E+02 0.0052 21.4 5.6 56 22-78 63-123 (338)
186 1ldj_A Cullin homolog 1, CUL-1 25.8 58 0.002 26.0 3.5 37 20-57 2-38 (760)
187 3nbk_A Phosphopantetheine aden 25.3 1E+02 0.0034 20.4 4.2 16 57-72 161-176 (177)
188 4ich_A Transcriptional regulat 25.2 74 0.0025 21.5 3.6 28 25-52 123-150 (311)
189 2w57_A Ferric uptake regulatio 25.1 59 0.002 20.4 2.9 53 16-68 6-59 (150)
190 1qa6_A Ribosomal protein L11; 25.0 81 0.0028 17.8 3.2 33 25-59 33-65 (67)
191 2kkp_A Phage integrase; SAM-li 24.7 96 0.0033 17.1 3.8 39 39-77 49-87 (117)
192 2ahq_A Sigma-54, RNA polymeras 24.6 33 0.0011 20.0 1.5 30 24-53 18-48 (76)
193 1x6i_A Hypothetical protein YG 24.4 94 0.0032 18.4 3.5 32 45-78 54-85 (91)
194 1lva_A Selenocysteine-specific 24.3 1.7E+02 0.0058 19.8 6.0 68 4-79 136-214 (258)
195 3bqo_A Telomeric repeat-bindin 24.1 22 0.00074 25.0 0.6 37 3-39 129-165 (211)
196 3dfg_A Xcrecx, regulatory prot 24.0 1.3E+02 0.0046 19.1 4.5 17 12-28 52-68 (162)
197 2hwv_A DNA-binding response re 23.4 1.3E+02 0.0043 18.0 5.8 41 36-78 57-97 (121)
198 2kl8_A OR15; structural genomi 23.2 49 0.0017 19.4 2.0 14 58-71 47-60 (85)
199 3f3m_A Phosphopantetheine aden 23.1 1.1E+02 0.0038 19.8 4.0 16 57-72 144-159 (168)
200 2hye_C Cullin-4A, CUL-4A; beta 23.1 72 0.0025 25.5 3.5 57 19-77 59-115 (759)
201 3e3v_A Regulatory protein RECX 23.0 48 0.0016 21.6 2.2 20 8-27 49-68 (177)
202 2k6o_A Cathelicidin antimicrob 23.0 62 0.0021 16.6 2.1 15 66-80 18-32 (37)
203 2k4j_A Putative transcriptiona 22.9 1.3E+02 0.0043 17.9 4.7 41 36-78 55-95 (115)
204 2e67_A Hypothetical protein TT 22.9 46 0.0016 23.1 2.2 21 58-78 98-118 (264)
205 2vpr_A Tetracycline resistance 22.8 38 0.0013 21.8 1.7 26 7-32 6-32 (207)
206 3rys_A Adenosine deaminase 1; 22.8 1.9E+02 0.0066 20.7 5.6 22 58-79 318-339 (343)
207 3qhp_A Type 1 capsular polysac 22.6 99 0.0034 18.2 3.5 36 2-37 122-157 (166)
208 1ug8_A Poly(A)-specific ribonu 22.5 61 0.0021 19.5 2.4 18 63-80 11-28 (87)
209 2kd1_A DNA integration/recombi 22.1 1.1E+02 0.0039 16.9 3.7 38 40-77 48-85 (118)
210 3fav_B ESAT-6, 6 kDa early sec 22.0 78 0.0027 17.7 2.8 35 39-79 44-78 (94)
211 2k02_A Ferrous iron transport 21.8 97 0.0033 18.2 3.2 20 31-52 7-26 (87)
212 2g7g_A RHA04620, putative tran 21.8 1.2E+02 0.0041 19.3 3.9 15 8-22 14-28 (213)
213 4ac0_A Tetracycline repressor 21.8 41 0.0014 21.7 1.7 27 7-33 5-32 (202)
214 2i5i_A UPF0249 protein EF_3048 21.7 51 0.0018 22.8 2.2 20 58-77 100-119 (263)
215 2jr5_A UPF0350 protein VC_2471 21.7 92 0.0032 18.6 3.1 31 46-78 53-83 (94)
216 4fvg_A Stomatin; mixed alpha-b 21.6 1.5E+02 0.005 18.1 4.4 27 24-51 60-86 (133)
217 2qxf_A Exodeoxyribonuclease I; 21.6 1.3E+02 0.0043 22.9 4.5 49 25-78 425-473 (482)
218 2vg0_A Short-chain Z-isoprenyl 21.4 79 0.0027 21.8 3.1 28 21-48 129-156 (227)
219 1irz_A ARR10-B; helix-turn-hel 21.3 1.2E+02 0.0042 17.0 4.3 32 22-53 9-40 (64)
220 2np3_A Putative TETR-family re 21.1 20 0.0007 22.3 0.0 24 9-32 34-58 (212)
221 1q14_A HST2 protein; histone d 20.9 88 0.003 23.0 3.4 43 12-54 276-318 (361)
222 2lv7_A Calcium-binding protein 20.8 72 0.0025 18.4 2.5 16 39-54 85-100 (100)
223 3sgv_B Undecaprenyl pyrophosph 20.7 23 0.00079 25.2 0.2 33 5-37 111-161 (253)
224 3glr_A NAD-dependent deacetyla 20.7 82 0.0028 22.4 3.2 18 18-35 260-277 (285)
225 3mwm_A ZUR, putative metal upt 20.6 91 0.0031 19.2 3.1 42 26-68 14-55 (139)
226 3o0y_A Lipoprotein; structural 20.4 3.2E+02 0.011 21.5 7.2 60 17-76 304-367 (609)
227 1j6w_A Autoinducer-2 productio 20.4 31 0.001 23.5 0.8 20 19-38 126-150 (175)
228 2vch_A Hydroquinone glucosyltr 20.4 60 0.002 24.0 2.4 48 6-53 415-468 (480)
229 1t5o_A EIF2BD, translation ini 20.3 2E+02 0.0067 21.0 5.2 56 22-78 72-128 (351)
230 2o03_A Probable zinc uptake re 20.3 1.2E+02 0.0042 18.2 3.6 42 26-68 11-52 (131)
No 1
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-39 Score=208.06 Aligned_cols=81 Identities=65% Similarity=1.088 Sum_probs=78.6
Q ss_pred CccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhhc
Q 042650 1 MIESGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLASTA 80 (81)
Q Consensus 1 LvesGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~~ 80 (81)
|++||||++|+++|+.||+||||+|+||++||++++++|++++||++|+++|+|+|+++||++||+||+++||+||++++
T Consensus 20 LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~g~~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~rIr~fL~~~~ 99 (101)
T 4dhx_B 20 LIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99 (101)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 042650 81 T 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 100 ~ 100 (101)
T 4dhx_B 100 S 100 (101)
T ss_dssp -
T ss_pred c
Confidence 5
No 2
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=100.00 E-value=2.7e-37 Score=197.25 Aligned_cols=77 Identities=27% Similarity=0.553 Sum_probs=74.5
Q ss_pred CccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 1 MIESGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 1 LvesGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
|++||||++|+++|+.||.||||+|+||++||++++++ +++||++|+++|+|+|+++||++||+||+++||+||++.
T Consensus 16 LveSGe~erL~~lL~~rL~EcGW~Devr~~~r~~i~~~--~~vt~~~L~~~I~P~Ar~~VP~~VK~Ell~~Ir~fL~~~ 92 (96)
T 3mhs_B 16 LVESGNYELISNELKARLLQEGWVDKVKDLTKSEMNIN--ESTNFTQILSTVEPKALEMVSDSTRETVLKQIREFLEEI 92 (96)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH--TCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCcHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhc--CCCCHHHHHHHHhHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999988 799999999999999999999999999999999999863
No 3
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=87.67 E-value=1.2 Score=27.81 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhC
Q 042650 8 ERLKELLRERLIECGWRDEMKSLCRAYTRKKG 39 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g 39 (81)
..|+..++++|+++|=++.++++-++-+.+.|
T Consensus 10 ~~lka~I~~~LveSGe~erL~~lL~~rL~EcG 41 (101)
T 4dhx_B 10 AQMRAAINQKLIETGERERLKELLRAKLIECG 41 (101)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 67999999999999999999999999999888
No 4
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=87.42 E-value=1.2 Score=27.57 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhC
Q 042650 8 ERLKELLRERLIECGWRDEMKSLCRAYTRKKG 39 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g 39 (81)
..|+..++++|.++|=++.++++-+.-+.+.|
T Consensus 6 ~~lk~~I~~~LveSGe~erL~~lL~~rL~EcG 37 (96)
T 3mhs_B 6 AQLKSQIQQYLVESGNYELISNELKARLLQEG 37 (96)
T ss_dssp THHHHHHHHHHHHTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHCC
Confidence 47999999999999999999999999999988
No 5
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=86.54 E-value=0.65 Score=28.24 Aligned_cols=56 Identities=9% Similarity=0.002 Sum_probs=34.8
Q ss_pred ccchhH----HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhh
Q 042650 2 IESGEK----ERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGR 57 (81)
Q Consensus 2 vesGe~----erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar 57 (81)
|+||.| +-|++.|+.--....|.+.+|....+-+.+-....++++++++++.-++.
T Consensus 22 V~sG~Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~Sg~~~~~d~d~v~a~~~~~~~ 81 (88)
T 3kxe_C 22 VADGRYGSASEVIRAGLRLLEENEAKLAALRAALIEGEESGFIEDFDFDAFIEERSRASA 81 (88)
T ss_dssp HTTTSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEESSCCHHHHHHHHHHC--
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHh
Confidence 567776 55555555444444566777777776665422344799999999865544
No 6
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=85.54 E-value=1.8 Score=26.83 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHH
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIR 73 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir 73 (81)
+.|++.++++|..-. .=+|+.+.+...|..+..+|.+.-+ +...+-
T Consensus 14 ~~v~~~A~~~I~~l~--~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~ 59 (114)
T 4hyz_A 14 ETVRKQAMEDIEIAQ--SKDYESWKSRFTKDLQSSLTEESYD-SYLKIL 59 (114)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHH
Confidence 468999999997654 3399999999999999999999988 777644
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=83.57 E-value=1.4 Score=26.88 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=30.3
Q ss_pred CHHHHHHhhchhhhccC-CHHHHHHHHHHHHHHh
Q 042650 44 TVDDLVHVITPKGRASV-PDPVKAELLQRIRSFL 76 (81)
Q Consensus 44 ~~~~L~~~i~P~Ar~~V-P~~vk~Ell~~Ir~fL 76 (81)
--++|+..+.=.+++++ |.+.|..+..+||+|=
T Consensus 45 EA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk 78 (97)
T 3onj_A 45 ELFDLLDQMDVEVNNSIGDASERATYKAKLREWK 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 67889999999999998 9999999999999984
No 8
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=77.40 E-value=2.8 Score=26.81 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHh---hCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 042650 10 LKELLRERLIECGWRDEMKSLCRAYTRK---KGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSF 75 (81)
Q Consensus 10 L~~~L~~rL~e~GW~D~vr~~~re~i~~---~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~f 75 (81)
|.+.|..+|. ..+-+.-+..|..+|.. .|-=..+++++.+.+. |+.+-...++.+|+.|
T Consensus 5 L~e~L~~Ql~-~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~------~~~~eve~vL~~iQ~~ 66 (130)
T 2k9m_A 5 ELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLR------CSVEELEKVRQKVLRL 66 (130)
T ss_dssp HHHHHHHHHH-HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTT------CCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcC------CCHHHHHHHHHHHhcC
Confidence 6788888888 88888889999988854 4544568999988772 8888888899988865
No 9
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=75.44 E-value=11 Score=22.91 Aligned_cols=48 Identities=15% Similarity=0.371 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
++=+..++++=+ +.+ --++|+..+.=.++++ |.+.|..+..+||+|=.
T Consensus 45 e~rk~~i~~ie~--~ld--EA~eLl~qMelE~r~~-p~s~R~~~~~klr~Yk~ 92 (102)
T 2qyw_A 45 EEKKKLVRDFDE--KQQ--EANETLAEMEEELRYA-PLTFRNPMMSKLRNYRK 92 (102)
T ss_dssp HHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence 444555554332 223 6788999998899887 99999999999999843
No 10
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=75.36 E-value=3.6 Score=22.98 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 40 RNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
....++.+|-+.+. +|.+=..-.|.+|+.||++|+..+
T Consensus 10 l~klkV~eLK~~L~--~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECL--ARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHH--HHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHH--HcCCCCCCcHHHHHHHHHHHHhcC
Confidence 45667777777664 344444567999999999999765
No 11
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=74.85 E-value=4.2 Score=23.48 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHh---hCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 042650 11 KELLRERLIECGWRDEMKSLCRAYTRK---KGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSF 75 (81)
Q Consensus 11 ~~~L~~rL~e~GW~D~vr~~~re~i~~---~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~f 75 (81)
.+.|..+|. ...-+..+..|.-+|.. .|-=..+++++...+- |+.+-...++.+|+.|
T Consensus 15 ~ehL~~Ql~-~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~------~~~~eve~vL~~lQ~~ 75 (76)
T 2k9l_A 15 LEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLR------CSVEELEKVRQKVLRL 75 (76)
T ss_dssp HHHHHHHHH-HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHT------SCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcC------CCHHHHHHHHHHHhcC
Confidence 677777777 77777778889888854 4544568999998772 8888888888888765
No 12
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=74.20 E-value=2.3 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.3
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 44 TVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 44 ~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
--++|+..+.=.++++ |.+.|..+..+||+|=
T Consensus 49 EA~ell~qMelE~r~~-p~~~R~~~~~klr~Yk 80 (102)
T 1vcs_A 49 EARELLEQMDLEVREI-PPQSRGMYSNRMRSYK 80 (102)
T ss_dssp HHHHHHHHHHHHHTTS-CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CHHhHHHHHHHHHHHH
Confidence 5678899988888877 9999999999999984
No 13
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=72.22 E-value=12 Score=24.24 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchh--hhccCCHHHHHHH
Q 042650 6 EKERLKELLRERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPK--GRASVPDPVKAEL 68 (81)
Q Consensus 6 e~erL~~~L~~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~--Ar~~VP~~vk~El 68 (81)
+.+.+.+.+.+.|.+.|.+ ..-|...-+.+.+.+ ..+|.++|++.+.++ .-.+=+..|++-|
T Consensus 12 ~~~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL 76 (162)
T 4ets_A 12 EYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTL 76 (162)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence 4677788888999999975 445666677777654 689999999999877 5555566776654
No 14
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=71.37 E-value=5.8 Score=25.15 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 13 LLRERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 13 ~L~~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
.+.+.|.+.|.+ ..-|...-+.+.+.+ .+|.++|++.+.++.-.+=+..|++-|
T Consensus 5 ~~~~~L~~~g~r~T~qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L 59 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTL 59 (145)
T ss_dssp THHHHHHTTTCCCCHHHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHH
Confidence 356678888887 677888888888775 789999999997766555556666654
No 15
>3eir_A Putative ATP/GTP binding protein; papain-like fold, unknown function; 2.10A {Burkholderia pseudomallei} PDB: 3eit_A 3gqm_A 4hcp_A 4hcn_A
Probab=70.73 E-value=10 Score=27.28 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=34.5
Q ss_pred HHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHH
Q 042650 32 RAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRS 74 (81)
Q Consensus 32 re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~ 74 (81)
...+..+|.+.+++++|-.-+ .+--.++|++++++|+..|-.
T Consensus 198 eDWmt~rg~~pIsLd~l~~ll-s~ef~~l~dd~q~~lia~il~ 239 (281)
T 3eir_A 198 EDWISRRGSDPVSLDELNQLL-SKDFSKMPDDVQTRLLASILQ 239 (281)
T ss_dssp HHHHHHHTTCCBCHHHHHHHT-SGGGGGSCHHHHHHHHHHHHC
T ss_pred HHHHhhcCCCcccHHHHHHHH-HHHhhhCCHHHHHHHHHHHHh
Confidence 356788899999999986655 566789999999999988754
No 16
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=69.67 E-value=6 Score=22.67 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
|.++|..+-...+++|.+.+|++.+++.
T Consensus 21 R~kvrr~tE~~Are~G~~~IT~ev~~~A 48 (62)
T 2l09_A 21 RSQAKARIEQLARQAEQDIVTPELVEQA 48 (62)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 5677888888889999999999988763
No 17
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=68.73 E-value=6.5 Score=22.61 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
|.++|..+-...+++|.+.+|++-+++.
T Consensus 22 R~kvrr~tE~~Are~G~~~IT~ev~~~A 49 (63)
T 2kru_A 22 RKKVRKNTDNYAREIGEPVVTADVFRKA 49 (63)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEcHHHHHHH
Confidence 5677777778888999999999988764
No 18
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=67.85 E-value=5.2 Score=29.31 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=35.9
Q ss_pred hcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhc--cCCHHHHHHHHHHHHHHh
Q 042650 20 ECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRA--SVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 20 e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~--~VP~~vk~Ell~~Ir~fL 76 (81)
+.+| ..++..+..++...+.+..+|++|+..|---... ..++.+...+-..+.+++
T Consensus 16 e~~W-~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l 73 (391)
T 2wzk_A 16 EDKW-DFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFI 73 (391)
T ss_dssp HHHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 6688 4788888888876566666899999887665443 234444444444444443
No 19
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=67.43 E-value=15 Score=21.09 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhh--hccCCHHHHHHHHHHHHHHhhh
Q 042650 23 WRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKG--RASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 23 W~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~A--r~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
.-++++...+++++..+.+++|.-++-..+..+- .++- +=|..|=..|.+||..
T Consensus 13 sd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs--~kK~~I~~~I~~~L~~ 68 (70)
T 1q1v_A 13 TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLT--ERKDFIKTTVKELISL 68 (70)
T ss_dssp CHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCS--HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCCh--HHHHHHHHHHHHHHhc
Confidence 4678999999999999999999988888775544 3332 5566666777777753
No 20
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=65.55 E-value=4.9 Score=21.97 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhhc
Q 042650 40 RNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLASTA 80 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~~ 80 (81)
....++.+|=+++ ++|.+=..-.|.+|+.|+.+|++...
T Consensus 10 ~~klkV~eLK~eL--k~RgL~~~G~Ka~Li~RL~~~~~~e~ 48 (50)
T 1zrj_A 10 VRRLKVNELREEL--QRRGLDTRGLKAELAERLQAALSGPS 48 (50)
T ss_dssp GGGSCHHHHHHHH--HHTTCCCCSCHHHHHHHHHHHHCCCC
T ss_pred HHHCcHHHHHHHH--HHcCCCCCCcHHHHHHHHHHHHhccc
Confidence 3456777777776 34454455679999999999997643
No 21
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=65.06 E-value=11 Score=22.77 Aligned_cols=29 Identities=3% Similarity=0.064 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+++|+++|.++.
T Consensus 11 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~a 39 (195)
T 3ppb_A 11 KQAILETALQLFVSQGFHGTSTATIAREA 39 (195)
T ss_dssp HHHHHHHHHHHHHHTCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 45566666777777777777777766554
No 22
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=63.18 E-value=13 Score=22.49 Aligned_cols=27 Identities=7% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~ 35 (191)
T 1sgm_A 9 EKILHTASRLSQLQGYHATGLNQIVKE 35 (191)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 344455555555555555555555544
No 23
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=63.00 E-value=15 Score=25.09 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
++.+.+.+.+.++| ||++++++-+.--=..-+|+....+....++..|..
T Consensus 9 ~~~~~~~~~L~~rG---Vtl~diae~v~~Lq~~y~p~l~~e~~~e~v~~vL~K 58 (178)
T 1y9i_A 9 ALESKARSWLIERG---VEIDDIAELVLFLQQKYHPGLELDICRQNVEHVLRK 58 (178)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTSTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHhCC
Confidence 46777888999986 588888887754434458887788888888777643
No 24
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=62.86 E-value=8.6 Score=22.83 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 40 RNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
....++.+|=+++. +|.+=..-.|.+|+.|+++|++..
T Consensus 26 l~klkVaeLK~eLk--~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 26 LDDMKVAELKQELK--LRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTSCHHHHHHHHH--HTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHCcHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHHHcc
Confidence 45667777777663 444444566999999999999764
No 25
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=62.70 E-value=30 Score=26.79 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH--HhcChHHHHHHHHHH--HHH---hhC---CCCCCHHHHHHhhchh-------------hhccCCHHH
Q 042650 8 ERLKELLRERL--IECGWRDEMKSLCRA--YTR---KKG---RNNVTVDDLVHVITPK-------------GRASVPDPV 64 (81)
Q Consensus 8 erL~~~L~~rL--~e~GW~D~vr~~~re--~i~---~~g---~~~v~~~~L~~~i~P~-------------Ar~~VP~~v 64 (81)
..||..|+..+ .+-.|..=+..+.++ .|+ ++| +..++|.+|.+--.+. -|+.||.+-
T Consensus 59 ~~~K~~L~~~~~~v~~sw~rl~~~L~~~v~~I~~~~~~G~~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgvvp~e~ 138 (461)
T 2dbn_A 59 RQMKHALRAQLGDVQQIFNQLSDDIATRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQ 138 (461)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETSSCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecHHHhcCCCCCHHHHHHHHhccEEEECCCCCHHH
Confidence 35666665553 445677655555443 344 566 4566999987653222 267899999
Q ss_pred HHHHHHHHHHHhhhh
Q 042650 65 KAELLQRIRSFLAST 79 (81)
Q Consensus 65 k~Ell~~Ir~fL~~~ 79 (81)
-....+.|.+||+.+
T Consensus 139 A~~~~~~~~~yl~~n 153 (461)
T 2dbn_A 139 ALGWDQSMLDYLDRN 153 (461)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999775
No 26
>2lo0_A Uncharacterized protein; dimerization, homodimerization, protein binding; NMR {Aspergillus fumigatus}
Probab=62.26 E-value=8.4 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 042650 7 KERLKELLRERLIECGWRDEMKSLCRAYTRK 37 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D~vr~~~re~i~~ 37 (81)
|+-|+.+|.+||.+-.+-.+++.+.|..++.
T Consensus 43 W~DL~gFL~qRlkDe~~A~~l~siFk~AW~s 73 (75)
T 2lo0_A 43 WDDLQGFLEQRLKDYDEANKLRVLFKEAWRS 73 (75)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999888764
No 27
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=62.10 E-value=13 Score=22.39 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.+-+.+.+.+.++|.+++|+.+|.++.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 38 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEA 38 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 4556667777777777777777776543
No 28
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=62.00 E-value=13 Score=22.83 Aligned_cols=28 Identities=4% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+++|+.+|.++.
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 44 (220)
T 3lhq_A 17 QHILDVALRLFSQQGVSATSLAEIANAA 44 (220)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 4455666667777777777777766543
No 29
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=61.94 E-value=13 Score=22.72 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 44 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKA 44 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHh
Confidence 45566667777777777777777776543
No 30
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=61.57 E-value=14 Score=22.75 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 32 (190)
T 3vpr_A 6 DRILEEAAKLFTEKGYEATSVQDLAQA 32 (190)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 444555555555566555565555443
No 31
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=61.45 E-value=13 Score=22.92 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+++|.++.
T Consensus 20 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 48 (212)
T 1pb6_A 20 KKAILSAALDTFSQFGFHGTRLEQIAELA 48 (212)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 34566667777777787777777776654
No 32
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=61.25 E-value=14 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+++|+++|.+..
T Consensus 13 r~~il~aa~~lf~~~G~~~~tv~~Ia~~a 41 (196)
T 3he0_A 13 RDQILAAAEQLIAESGFQGLSMQKLANEA 41 (196)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 45666777777777787778887776654
No 33
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=60.89 E-value=14 Score=22.39 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+++|.++.
T Consensus 9 r~~Il~aa~~l~~~~G~~~~t~~~IA~~a 37 (199)
T 3qbm_A 9 RERVVAQAAALFNVSGYAGTAISDIMAAT 37 (199)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcCCHHHHHHHh
Confidence 34556667777777777777777776654
No 34
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=60.41 E-value=15 Score=22.44 Aligned_cols=29 Identities=7% Similarity=0.209 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+++|+++|.+..
T Consensus 19 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 47 (206)
T 3kz9_A 19 KQQLMEIALEVFARRGIGRGGHADIAEIA 47 (206)
T ss_dssp HHHHHHHHHHHHHHSCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHh
Confidence 45566677777788888888887776653
No 35
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=60.34 E-value=14 Score=22.82 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~ 60 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADR 60 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHH
Confidence 3455555666666666666666666554
No 36
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=60.15 E-value=15 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+.+|+++|.++.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~Ia~~a 41 (203)
T 3b81_A 13 RTELANKIWDIFIANGYENTTLAFIINKL 41 (203)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHh
Confidence 45666777777888888888888887654
No 37
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=59.84 E-value=14 Score=22.55 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 20 ~Il~aa~~l~~~~G~~~~t~~~Ia~ 44 (211)
T 3him_A 20 RIRAAAIEVFAAKGYGATTTREIAA 44 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHH
Confidence 3444444445555555555554444
No 38
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=59.77 E-value=11 Score=23.01 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+++|+++|.++.
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 38 (206)
T 3dew_A 10 RSRLMEVATELFAQKGFYGVSIRELAQAA 38 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHh
Confidence 34555666666666666666666665543
No 39
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=59.19 E-value=16 Score=22.24 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.|.+.+.++|.+.+|++++.+..
T Consensus 4 r~~Il~aA~~lf~~~Gy~~~s~~~Ia~~a 32 (179)
T 2eh3_A 4 KERILEVSKELFFEKGYQGTSVEEIVKRA 32 (179)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHh
Confidence 45677778888888888888888888765
No 40
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=59.18 E-value=16 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+++|.++.
T Consensus 14 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 42 (202)
T 3lwj_A 14 RQKILTCSLDLFIEKGYYNTSIRDIIALS 42 (202)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 45566778888888888888988888765
No 41
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=58.78 E-value=11 Score=22.74 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 12 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 39 (196)
T 3col_A 12 QVKIQDAVAAIILAEGPAGVSTTKVAKR 39 (196)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 3445555566666666666666665544
No 42
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=58.40 E-value=12 Score=22.65 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.+-+.+.+.+.++|.+++|+++|.+.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 37 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQV 37 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 344455555555566666666655544
No 43
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=58.34 E-value=16 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.340 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 19 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 46 (207)
T 2rae_A 19 QDRISTVGIELFTEQGFDATSVDEVAEA 46 (207)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 3455566666666677767777666554
No 44
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=58.08 E-value=11 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 32 (194)
T 3bqz_B 5 DKILGVAKELFIKNGYNATTTGEIVKLS 32 (194)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHh
Confidence 4556667777777777777777776543
No 45
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=57.65 E-value=16 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 12 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 40 (216)
T 3s5r_A 12 RELLLDAATTLFAEQGIAATTMAEIAASV 40 (216)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 45566667777777777777777766543
No 46
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=57.30 E-value=18 Score=22.35 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 14 r~~Il~aA~~lf~e~G~~~~t~~~IA~~ 41 (192)
T 2fq4_A 14 QKAILSASYELLLESGFKAVTVDKIAER 41 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHH
Confidence 4455556666666666666666665543
No 47
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=57.07 E-value=18 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 22 ~~Il~aA~~lf~~~G~~~~t~~~IA~~a 49 (216)
T 3qqa_A 22 EKIKAVALELFLTKGYQETSLSDIIKLS 49 (216)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhCCHHHHHHHh
Confidence 4455556666666666666666665543
No 48
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=57.00 E-value=17 Score=22.55 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+++|+++|.+..
T Consensus 14 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 42 (189)
T 3vp5_A 14 RNRVYDACLNEFQTHSFHEAKIMHIVKAL 42 (189)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccHHHHHHHh
Confidence 34556667777777777777777776654
No 49
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=56.57 E-value=18 Score=22.46 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+++|+++|.+..
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~Ia~~a 44 (203)
T 3ccy_A 16 RDTIIERAAAMFARQGYSETSIGDIARAC 44 (203)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 44555666666666666666666665543
No 50
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=56.46 E-value=24 Score=24.33 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
.++.+.+.+.+.++| ||++++.+-+.--=..-+|+-...+....+...|.
T Consensus 9 ~~~~~~~i~~L~eRG---Vtl~dIaeiv~~Lq~~Y~p~lt~e~c~e~v~~VL~ 58 (189)
T 1tlq_A 9 NEMVDITKDMLNKRG---VMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVLN 58 (189)
T ss_dssp HHHHHHHHHHHHHTT---CCHHHHHHHHHHHTTTTCTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCccHHHHHHHHHHHHc
Confidence 457777888999886 57888888775555556888888888888877774
No 51
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=56.36 E-value=17 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~ 33 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEA 33 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHH
Confidence 445555555555556555565555543
No 52
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=56.19 E-value=19 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~IA~~a 44 (212)
T 3knw_A 16 RQHILDSGFHLVLRKGFVGVGLQEILKTS 44 (212)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHh
Confidence 45566677777777888888888777654
No 53
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=56.14 E-value=24 Score=25.33 Aligned_cols=57 Identities=11% Similarity=0.212 Sum_probs=41.8
Q ss_pred hcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 20 ECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 20 e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
+..|. .++.....+.... ....+|++|+..|.--.....++.+.+.+...+.+++.+
T Consensus 11 ~~~W~-~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~ 67 (354)
T 4a64_A 11 DETWQ-KLKEAVEAIQNST-SIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKA 67 (354)
T ss_dssp THHHH-HHHHHHHHHHTTC-CCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 34565 5666677666544 456799999999988888888888888777777777643
No 54
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=56.05 E-value=19 Score=22.12 Aligned_cols=29 Identities=14% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 18 r~~Il~aa~~lf~~~G~~~~t~~~Ia~~a 46 (213)
T 2qtq_A 18 RDLLLQTASNIMREGDVVDISLSELSLRS 46 (213)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHh
Confidence 45566667777777777777777776543
No 55
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=55.99 E-value=13 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHH
Q 042650 8 ERLKELLRERLIECGWRD-EMKSLC 31 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D-~vr~~~ 31 (81)
++|-+--..-+.+.|+.. .+++.|
T Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA 39 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDGLSLRQLA 39 (199)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHH
Confidence 344444444444445443 444444
No 56
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=55.74 E-value=19 Score=21.77 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|++++.+..
T Consensus 9 r~~Il~aA~~l~~~~G~~~~s~~~IA~~a 37 (180)
T 2fd5_A 9 RARILGAATQALLERGAVEPSVGEVMGAA 37 (180)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 34556667777777777777777776654
No 57
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=55.73 E-value=20 Score=21.68 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|++++.++.
T Consensus 12 r~~Il~aa~~lf~~~G~~~~t~~~IA~~a 40 (197)
T 3rd3_A 12 RQHLLDTGYRIMAVKGFSGVGLNEILQSA 40 (197)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccCCHHHHHHHh
Confidence 34555666666677777777777766553
No 58
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=55.57 E-value=13 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
.+-+.+.+.+.++|.+++|+.+|.+.
T Consensus 16 ~Il~aA~~l~~e~G~~~~s~~~IA~~ 41 (198)
T 3cjd_A 16 KLIDLAEAQIEAEGLASLRARELARQ 41 (198)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCChhhcCHHHHHHH
Confidence 44455666666666666666665544
No 59
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=55.41 E-value=19 Score=23.03 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 45 r~~Il~aA~~l~~~~G~~~~tv~~IA~~A 73 (229)
T 3bni_A 45 LTRILDACADLLDEVGYDALSTRAVALRA 73 (229)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhhccHHHHHHHH
Confidence 35566667777777777777777776654
No 60
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=55.34 E-value=14 Score=22.57 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+++|.++.
T Consensus 19 r~~Il~aa~~lf~~~G~~~~ti~~Ia~~a 47 (208)
T 3cwr_A 19 RESIVGAAQRLLSSGGAAAMTMEGVASEA 47 (208)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHhccHHHHHHHh
Confidence 34555666667777777777777766543
No 61
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=55.09 E-value=10 Score=23.33 Aligned_cols=28 Identities=11% Similarity=0.145 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHhhchhh
Q 042650 28 KSLCRAYTRKKGRNNVTVDDLVHVITPKG 56 (81)
Q Consensus 28 r~~~re~i~~~g~~~v~~~~L~~~i~P~A 56 (81)
=+.|.+++.++| ..++|.+|+.+|...-
T Consensus 16 iDvAy~iL~~~~-~~~~F~dL~~eV~~~~ 43 (99)
T 2krc_A 16 VEIAHELFEEHK-KPVPFQELLNEIASLL 43 (99)
T ss_dssp HHHHHHHHHHHC-SCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcccHHHHHHHHHHHh
Confidence 357889999987 7899999999998774
No 62
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=55.08 E-value=18 Score=26.03 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=42.8
Q ss_pred HhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 19 IECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 19 ~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
.+..|. .++....++.... ....+|++|+..|.--.....++.+...+...|.+++.
T Consensus 13 ~~~~W~-~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~ 69 (364)
T 4eoz_B 13 VNSIWD-LLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLI 69 (364)
T ss_dssp HHHHHH-HHHHHHHHHHTTC-GGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhhhCHHHHHHHHHHHHHHHHH
Confidence 466784 6777777777643 45789999999998888887888777777777776664
No 63
>1u9p_A PARC; unknown function; 1.90A {Escherichia coli} SCOP: a.43.1.1
Probab=55.04 E-value=28 Score=22.28 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=25.2
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 44 TVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 44 ~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
++-+.+..+.-.+..+||++|.+-|+.-|.-|-
T Consensus 73 ~l~~~ir~~a~~~~~s~~~ei~~r~~~~~~~~~ 105 (120)
T 1u9p_A 73 EVLDLVRKVAEENGRSVNSEIYQRVMESFKKEG 105 (120)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence 455666666677778999999988888887764
No 64
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=54.72 E-value=20 Score=22.39 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+++|.++.
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 38 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAEA 38 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 45666677777777777777777776654
No 65
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=54.65 E-value=15 Score=22.19 Aligned_cols=28 Identities=18% Similarity=0.417 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 12 r~~Il~aa~~l~~~~G~~~~t~~~IA~~ 39 (191)
T 3on4_A 12 KERILAVAEALIQKDGYNAFSFKDIATA 39 (191)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 3455556666666666666666666554
No 66
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=54.55 E-value=13 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 14 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~a 42 (177)
T 3kkc_A 14 KVAIYNAFISLLQENDYSKITVQDVIGLA 42 (177)
T ss_dssp HHHHHHHHHHHTTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChhHhhHHHHHHHh
Confidence 34566667777777787788888777654
No 67
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=54.53 E-value=20 Score=22.47 Aligned_cols=27 Identities=7% Similarity=0.064 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 31 ~~Il~aa~~lf~~~G~~~~tv~~IA~~ 57 (215)
T 2qko_A 31 AALVNAAIEVLAREGARGLTFRAVDVE 57 (215)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHH
Confidence 445555555666666666666555443
No 68
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=54.31 E-value=20 Score=22.19 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 41 (212)
T 2ras_A 13 RARLVDVAQAIVEERGGAGLTLSELAARA 41 (212)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHh
Confidence 34555666667777777777777766543
No 69
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=54.12 E-value=21 Score=22.19 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.|.+.+.++|.+++|++++.++
T Consensus 12 R~~Il~aA~~lf~~~G~~~~s~~~IA~~ 39 (210)
T 3vib_A 12 KEHLMLAALETFYRKGIARTSLNEIAQA 39 (210)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 3556666677777777777777766554
No 70
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=54.01 E-value=22 Score=22.12 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.+-+.+.+.+.++|.+++|++++.+.
T Consensus 12 r~~Il~aA~~lf~~~G~~~~s~~~Ia~~ 39 (197)
T 2f07_A 12 YEKILQAAIEVISEKGLDKASISDIVKK 39 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 3455555666666666666666666544
No 71
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=53.92 E-value=27 Score=25.72 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=42.9
Q ss_pred HhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 19 IECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 19 ~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
.+..| ..++.....+.... ....+|++|+..|.--.....++.+...+...|.+++.
T Consensus 30 ~~~~W-~~L~~ai~~I~~~~-~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~ 86 (410)
T 4ap2_B 30 VNSIW-DLLKNAIQEIQRKN-NSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLI 86 (410)
T ss_dssp HHHHH-HHHHHHHHHHHTTC-CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 35678 56777777777644 45789999999998888888888777777777777664
No 72
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=53.88 E-value=20 Score=22.31 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+++|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 32 r~~Il~aA~~l~~~~G~~~~t~~~IA~~ 59 (222)
T 3bru_A 32 HQSLIRAGLEHLTEKGYSSVGVDEILKA 59 (222)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHH
Confidence 4455566666666666666666666554
No 73
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=53.75 E-value=20 Score=22.24 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 44 (204)
T 2ibd_A 16 RTELLDIAATLFAERGLRATTVRDIADAA 44 (204)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHh
Confidence 45566667777777777777777776543
No 74
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=53.48 E-value=16 Score=22.17 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLV 49 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~ 49 (81)
.+-+.+.+.+.++|.+++|+.+|.
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia 35 (183)
T 1zk8_A 12 KIVETAAEIADANGVQEVTLASLA 35 (183)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHH
Confidence 333444444444444444444443
No 75
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=53.47 E-value=21 Score=22.09 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+++|+++|.++.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~ti~~Ia~~a 41 (216)
T 3f0c_A 13 LELIINAAQKRFAHYGLCKTTMNEIASDV 41 (216)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCCHHHHHHHh
Confidence 45566667777777777777777776653
No 76
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=53.31 E-value=15 Score=22.73 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 11 r~~Il~aa~~l~~~~G~~~~ti~~IA~~ 38 (193)
T 2dg8_A 11 RERILAATLDLIAEEGIARVSHRRIAQR 38 (193)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHH
Confidence 4455555666666666666666665544
No 77
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=52.57 E-value=23 Score=21.55 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+.+|++++.+..
T Consensus 11 ~~Il~aA~~l~~~~G~~~~t~~~IA~~A 38 (194)
T 3dpj_A 11 DQIVAAADELFYRQGFAQTSFVDISAAV 38 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 4455566666777777777777766543
No 78
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=52.51 E-value=24 Score=21.86 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 14 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 42 (197)
T 2hyt_A 14 RATLLATARKVFSERGYADTSMDDLTAQA 42 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 34555666667777777777777766543
No 79
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=52.51 E-value=15 Score=22.62 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
+.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~ 35 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAE 35 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHH
Confidence 33444455555555555555555443
No 80
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=52.41 E-value=22 Score=21.98 Aligned_cols=28 Identities=11% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+++|+++|.+..
T Consensus 12 ~~Il~aA~~lf~~~G~~~~t~~~Ia~~A 39 (204)
T 3anp_C 12 ERIFRAAMELFRNRGFQETTATEIAKAA 39 (204)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHc
Confidence 4555666666677777777777766543
No 81
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=52.30 E-value=17 Score=22.46 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.++
T Consensus 29 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~ 55 (217)
T 3mvp_A 29 NKILQVAKDLFSDKTYFNVTTNEIAKK 55 (217)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 445555666666666666666666554
No 82
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=52.14 E-value=13 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+++|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 34 (170)
T 3egq_A 6 SVRIIEAALRLYMKKPPHEVSIEEIAREA 34 (170)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCcHHHHHHHh
Confidence 34555556666666666666666666543
No 83
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=52.06 E-value=21 Score=22.32 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 5 GEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 5 Ge~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
.+|--|-.+|+.+|.+ |+|.+.+...+....++.+.+...+..|
T Consensus 26 ~Dy~PLlALL~r~Ltd----eev~~Va~~L~~~~~i~~~dI~~~I~~v 69 (103)
T 2kvc_A 26 TDSFAVLALLCRRLSH----DEVKAVANELMRLGDFDQIDIGVVITHF 69 (103)
T ss_dssp HHHHHHHHHHTTTSCH----HHHHHHHHHHHHHTSSCSSCHHHHHHSC
T ss_pred cchHHHHHHHhccCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3667788899999997 8999999998877545555555555555
No 84
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=51.98 E-value=24 Score=21.59 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++|-+.|.+.+.++|.+.+|++++.++
T Consensus 10 ~~Il~aA~~lf~~~G~~~~t~~~IA~~ 36 (192)
T 2zcm_A 10 DKIIDNAITLFSEKGYDGTTLDDISKS 36 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 345555666666666666666665544
No 85
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=51.94 E-value=24 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.|.+.+.++|.+.+|+++|.+..
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 41 (219)
T 2w53_A 13 REGILDAAEACFHEHGVARTTLEMIGARA 41 (219)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 45566666666777777777777666543
No 86
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=51.68 E-value=22 Score=22.01 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+++|.+..
T Consensus 19 r~~Il~aA~~l~~~~G~~~~t~~~IA~~a 47 (218)
T 3gzi_A 19 RDKLILAARNLFIERPYAQVSIREIASLA 47 (218)
T ss_dssp HHHHHHHHHHHHHTSCCSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcCCHHHHHHHh
Confidence 35566677777788888888888877654
No 87
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=51.58 E-value=17 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.++.
T Consensus 25 r~~Il~aA~~lf~~~G~~~~t~~~IA~~a 53 (214)
T 2zb9_A 25 RAEVLHAVGELLLTEGTAQLTFERVARVS 53 (214)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 34555566666666666666666665543
No 88
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=51.45 E-value=25 Score=21.80 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 9 r~~Il~aA~~lf~~~G~~~ts~~~IA~~a 37 (197)
T 2gen_A 9 KDEILQAALACFSEHGVDATTIEMIRDRS 37 (197)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 45566667777777777777777766543
No 89
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=51.16 E-value=18 Score=22.94 Aligned_cols=44 Identities=20% Similarity=0.406 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 5 GEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 5 Ge~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
.+|--|-.+|+.+|.+ |+|.+.+.+.+....++.+.+...+..|
T Consensus 28 ~Dy~PLLALL~r~Ltd----eev~~Va~~L~~~~~i~~~dI~~~I~~v 71 (112)
T 2lky_A 28 PDRVPLLALLTRRLTN----DEIKAIAEDLEKRAHFDHIDIGVLITQM 71 (112)
T ss_dssp HHHHHHHHHHTTTCCH----HHHHHHHHHHHHHCCCSCCCSHHHHHHH
T ss_pred cchHHHHHHHcccCCH----HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3667788999999997 8999999998877545555555555555
No 90
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=50.83 E-value=19 Score=24.31 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
+.+.+.+.+.++| ||++++++-+.--=..-+|+-...+....+...|.+
T Consensus 12 ~~~~~~~~L~~rG---Vtl~dia~~~~~Lq~~y~p~l~~e~~~e~v~~vL~K 60 (168)
T 1rfz_A 12 LEQTARRWLEERG---VTVEKIAELVYYLQSKYHPDLTMEECIENVNRVISK 60 (168)
T ss_dssp CHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHhcCccCCCcCHHHHHHHHHHHHCC
Confidence 4566888899886 588888887755444458887788888877777653
No 91
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.80 E-value=36 Score=21.20 Aligned_cols=54 Identities=22% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 14 LRERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 14 L~~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
+.+.|.+.|.+ ..-|...-+.+.+.+ ..+|.++|++.+....-.+=+..|++-|
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L 63 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSM-AHPTADDIYKALEGKFPNMSVATVYNNL 63 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCS-SCCCHHHHHHHHGGGCTTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCChhhHHHHH
Confidence 34556777764 667777778887654 5789999999997665444455665544
No 92
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=50.56 E-value=17 Score=22.40 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
+-+.+.+.+.++|.+.+|+++|.+
T Consensus 18 Il~aa~~lf~~~G~~~~tv~~Ia~ 41 (195)
T 2iu5_A 18 IAKAFKDLMQSNAYHQISVSDIMQ 41 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCeeCHHHHHH
Confidence 333444444444444444444443
No 93
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=50.34 E-value=18 Score=22.39 Aligned_cols=25 Identities=4% Similarity=0.145 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
.+-+.+.+.+.++|.+++|+.++.+
T Consensus 17 ~Il~aA~~lf~~~G~~~~t~~~IA~ 41 (217)
T 3nrg_A 17 RLIDVLLDEFAQNDYDSVSINRITE 41 (217)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHH
Confidence 3334444444444444444444443
No 94
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=50.21 E-value=21 Score=22.70 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHHHHH---hcChHHHHHHHH-HHHH--HhhCCCCCCHHHHHHhhc
Q 042650 4 SGEKERLKELLRERLI---ECGWRDEMKSLC-RAYT--RKKGRNNVTVDDLVHVIT 53 (81)
Q Consensus 4 sGe~erL~~~L~~rL~---e~GW~D~vr~~~-re~i--~~~g~~~v~~~~L~~~i~ 53 (81)
||.+..|.+-|.+.|. ..||.|.++-.+ +..| ...|....+|++|+..|.
T Consensus 57 sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alr 112 (114)
T 2rnn_A 57 SGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALR 112 (114)
T ss_dssp TSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 4555444444433322 446888887665 2222 224667779999988763
No 95
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=50.10 E-value=27 Score=21.69 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.|.+.+.++|.+++|++++.+..
T Consensus 14 r~~Il~aA~~lf~~~Gy~~ts~~~IA~~a 42 (205)
T 1rkt_A 14 QAEILEAAKTVFKRKGFELTTMKDVVEES 42 (205)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHH
Confidence 45666778888888888888888887654
No 96
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=49.95 E-value=27 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 40 (210)
T 2xdn_A 14 AQIIEAAERAFYKRGVARTTLADIAEL 40 (210)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHH
Confidence 445555666666666666666665544
No 97
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=49.95 E-value=27 Score=21.76 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.|.+.+.++|...+|+++|.++.
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 44 (199)
T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEY 44 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 35566667777777787777877776654
No 98
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=49.25 E-value=28 Score=21.71 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.|.+.+.++|.+.+|++++.+..
T Consensus 14 r~~Il~aA~~lf~~~G~~~ts~~~IA~~a 42 (211)
T 3bhq_A 14 DREIIQAATAAFISKGYDGTSMEEIATKA 42 (211)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 35566667777777777777777766543
No 99
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.15 E-value=27 Score=21.78 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++| +.+|+++|.+..
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~a 49 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAA 49 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHh
Confidence 5667777778888888 888888877654
No 100
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=49.14 E-value=28 Score=22.04 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+++|-+.+.+.+.++|.+++|+++|.+.
T Consensus 11 r~~Il~aA~~lf~~~Gy~~ts~~~IA~~ 38 (215)
T 1ui5_A 11 RATIIGAAADLFDRRGYESTTLSEIVAH 38 (215)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 3455555666666666666666666554
No 101
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=49.07 E-value=18 Score=22.47 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+++|+++|.++
T Consensus 6 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 32 (212)
T 3rh2_A 6 DKIIQASLELFNEHGERTITTNHIAAH 32 (212)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 344445555555555555555555443
No 102
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.93 E-value=26 Score=22.44 Aligned_cols=29 Identities=14% Similarity=0.296 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 18 r~~il~aA~~l~~~~G~~~~s~~~IA~~a 46 (216)
T 2oi8_A 18 RAEIKDHAWEQIATAGASALSLNAIAKRM 46 (216)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 34566667778888888888888887764
No 103
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=48.89 E-value=28 Score=21.99 Aligned_cols=29 Identities=14% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 37 r~~Il~aA~~lf~~~G~~~~t~~~IA~~A 65 (221)
T 3g7r_A 37 RARLLGTATRIFYAEGIHSVGIDRITAEA 65 (221)
T ss_dssp HHHHHHHHHHHHHHHCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 45566667777777787777777776654
No 104
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=48.75 E-value=28 Score=21.77 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.|.+.+.++|.+++|+++|.+.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 40 (210)
T 2wui_A 13 RDGILDAAERVFLEKGVGTTAMADLADA 40 (210)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 3455566666777777777777766554
No 105
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=48.14 E-value=20 Score=22.85 Aligned_cols=27 Identities=4% Similarity=0.092 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 43 ~~Il~aA~~lf~~~G~~~~t~~~IA~~ 69 (225)
T 2id3_A 43 EAVLLAAGDALAADGFDALDLGEIARR 69 (225)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 445555666666666666666665544
No 106
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.14 E-value=16 Score=25.94 Aligned_cols=51 Identities=14% Similarity=0.220 Sum_probs=38.1
Q ss_pred ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCC-----CCCCHHHHHHhh
Q 042650 2 IESGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGR-----NNVTVDDLVHVI 52 (81)
Q Consensus 2 vesGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~-----~~v~~~~L~~~i 52 (81)
+++|+++.-.+.|..-..+++=...+|..--.+|++++. .|.||+.+.+.|
T Consensus 125 iek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFSy~~~~~ki 180 (235)
T 3bu8_A 125 IKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFSYETFQQKM 180 (235)
T ss_dssp HHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCCHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhccHHHHHHHH
Confidence 478888888888888888888888888888888888873 234555555444
No 107
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=47.70 E-value=49 Score=20.69 Aligned_cols=56 Identities=23% Similarity=0.218 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCC-CCCHHHHHHhhchhhhccCCHH
Q 042650 4 SGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRN-NVTVDDLVHVITPKGRASVPDP 63 (81)
Q Consensus 4 sGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~-~v~~~~L~~~i~P~Ar~~VP~~ 63 (81)
..+|--|-.+|+.+|.+ |+|.+.+...+.....+ .++-.++-..|+-...++=.++
T Consensus 30 ~~Dy~PLlALL~R~Ltd----dev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~e 86 (107)
T 3ol3_A 30 PKDYFALLALLKRSLTE----DEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAE 86 (107)
T ss_dssp GGGHHHHHHHHTCCCCH----HHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHH
T ss_pred CCccHHHHHHhcccCCH----HHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHH
Confidence 35788899999999997 89999998888765422 3788888888876666555443
No 108
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=47.61 E-value=29 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 50 r~~Il~AA~~lf~e~G~~~~Ti~~IA~~A 78 (260)
T 2of7_A 50 REAIRAATYGLIRQQGYEATTVEQIAERA 78 (260)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHh
Confidence 45566667777788888888888877653
No 109
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=47.59 E-value=21 Score=22.19 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 19 ~Il~aA~~lf~~~G~~~~s~~~IA~ 43 (221)
T 3c2b_A 19 AVLDQALRLLVEGGEKALTTSGLAR 43 (221)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHH
Confidence 3444444444444544444444433
No 110
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=47.54 E-value=21 Score=22.05 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHH
Q 042650 7 KERLKELLRERLIECGWRD-EMKSLCR 32 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D-~vr~~~r 32 (81)
+++|-+--.+-+.+.|+.. .+++.|+
T Consensus 10 r~~Il~aA~~lf~~~G~~~~t~~~IA~ 36 (199)
T 2o7t_A 10 REHIITTTCNLYRTHHHDSLTMENIAE 36 (199)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCHHHHHH
Confidence 3445555555556666655 5555554
No 111
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=47.27 E-value=32 Score=21.23 Aligned_cols=29 Identities=10% Similarity=0.207 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.|.+.+.++|.+.+|+++|.+..
T Consensus 12 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 40 (194)
T 2nx4_A 12 RRSITAAAWRLIAARGIEAANMRDIATEA 40 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 45666777788888888888888887654
No 112
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=47.02 E-value=30 Score=20.99 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+++|-+.+.+.+.++|.+ +|++++.+.
T Consensus 11 r~~Il~aA~~lf~~~G~~-~t~~~IA~~ 37 (190)
T 3jsj_A 11 RERLLEAAAALTYRDGVG-IGVEALCKA 37 (190)
T ss_dssp HHHHHHHHHHHHHHHCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-ccHHHHHHH
Confidence 345555566666666666 666666544
No 113
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=46.44 E-value=20 Score=23.19 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 49 ~~Il~aA~~lf~~~G~~~~t~~~IA~~ 75 (245)
T 3aqt_A 49 ARLITSARTLMAERGVDNVGIAEITEG 75 (245)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCcHHHHHHH
Confidence 344455555555556555666555544
No 114
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.13 E-value=23 Score=22.22 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
.|-+.|.+.+.++|.+++|+++|.+
T Consensus 12 ~Il~aA~~lf~~~Gy~~~s~~~IA~ 36 (206)
T 1vi0_A 12 QIIDAAVEVIAENGYHQSQVSKIAK 36 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHH
Confidence 3334444444444444444444443
No 115
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=45.89 E-value=33 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.|.+.+.++|.+.+|+++|.+.
T Consensus 11 r~~Il~aA~~lf~~~G~~~~s~~~IA~~ 38 (203)
T 3cdl_A 11 RESIVQAAIAEFGDRGFEITSMDRIAAR 38 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHH
Confidence 3455556666666677666776666544
No 116
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=45.45 E-value=22 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+++|+.+|.++
T Consensus 47 ~~Il~aA~~lf~e~G~~~~t~~~IA~~ 73 (236)
T 3q0w_A 47 LAILATAENLLEDRPLADISVDDLAKG 73 (236)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 345555666666666666666666554
No 117
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=45.41 E-value=23 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+++|+++|.+.
T Consensus 10 e~Il~aA~~lf~~~G~~~~s~~~IA~~ 36 (178)
T 4hku_A 10 EIILNMAEKIIYEKGMEKTTLYDIASN 36 (178)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHH
Confidence 444455555555555555555555544
No 118
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=44.90 E-value=23 Score=22.35 Aligned_cols=18 Identities=17% Similarity=0.134 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhcChH
Q 042650 7 KERLKELLRERLIECGWR 24 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~ 24 (81)
+++|.+--..-+.+.|+.
T Consensus 7 r~~Il~aA~~lf~~~G~~ 24 (228)
T 3nnr_A 7 RDKILLSSLELFNDKGER 24 (228)
T ss_dssp HHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhChh
Confidence 344444444444445543
No 119
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=44.86 E-value=24 Score=22.38 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
++.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 30 r~~Il~AA~~lf~~~G~~~~t~~~IA~~ 57 (217)
T 3hta_A 30 RQRIIDAAIRVVGQKGIAGLSHRTVAAE 57 (217)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 3445555555666666666666655544
No 120
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=44.81 E-value=23 Score=22.64 Aligned_cols=25 Identities=8% Similarity=0.352 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 17 ~Il~AA~~l~~~~G~~~~tv~~IA~ 41 (231)
T 2qib_A 17 QLIGVALDLFSRRSPDEVSIDEIAS 41 (231)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHH
Confidence 3334444444444444444444433
No 121
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=44.76 E-value=18 Score=17.37 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhc
Q 042650 66 AELLQRIRSFLASTA 80 (81)
Q Consensus 66 ~Ell~~Ir~fL~~~~ 80 (81)
+.+-++|++|+...+
T Consensus 6 kkIgQkIkdFf~~l~ 20 (26)
T 2fcg_F 6 KRIVQRIKDFLRNLV 20 (26)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 456789999987643
No 122
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=44.05 E-value=35 Score=20.87 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
++|-+.+.+.+.++|.+ +|+++|.+
T Consensus 18 ~~Il~aA~~lf~~~G~~-~s~~~IA~ 42 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLD-AHLERIAR 42 (194)
T ss_dssp HHHHHHHHHHHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcC-CCHHHHHH
Confidence 33444444444444444 44444433
No 123
>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*
Probab=43.81 E-value=23 Score=23.18 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=21.2
Q ss_pred HHHHHHhhchhhhccCCHHHHHHHHHHHHHH
Q 042650 45 VDDLVHVITPKGRASVPDPVKAELLQRIRSF 75 (81)
Q Consensus 45 ~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~f 75 (81)
++.+..+..-.-....|+++|+.++.+|..+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
T 1ljr_A 213 ILSILEQAAKKTLPTPSPEAYQAMLLRIARI 243 (244)
T ss_dssp HHHHHHHHHTTCSCCCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHhhc
Confidence 4444444444445777999999999988754
No 124
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=42.71 E-value=21 Score=23.54 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 35 TRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 35 i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
+........|+.+|=+.+.-. .+=...-|.+|+.+|.+|++.+
T Consensus 56 ~~~g~L~kltV~eLK~~l~~~--gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 56 ISKGTLGKFTVPMLKEACRAY--GLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp HHHTCTTSSCHHHHHHHHHHH--TCCCCSSSHHHHHHHHHTTCC-
T ss_pred HHcCcHHhccHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhhh
Confidence 344557888999998877554 4445677999999999998653
No 125
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.50 E-value=29 Score=21.69 Aligned_cols=29 Identities=10% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.|.+...++|.+.+|+++|.+..
T Consensus 13 r~~Il~aA~~lF~~~Gy~~ts~~~IA~~a 41 (202)
T 2i10_A 13 DQVALQTAMELFWRQGYEGTSITDLTKAL 41 (202)
T ss_dssp CHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 45677778888888888888888876654
No 126
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=42.31 E-value=26 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHHH
Q 042650 8 ERLKELLRERLIECGWRD-EMKSLCR 32 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D-~vr~~~r 32 (81)
++|-+--.+-+.+.|+.. .|++.|+
T Consensus 25 ~~Il~AA~~lf~e~G~~~~s~~~IA~ 50 (207)
T 3bjb_A 25 VRMLEAAIELATEKELARVQMHEVAK 50 (207)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 444444555555555543 4444443
No 127
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=42.24 E-value=38 Score=22.27 Aligned_cols=29 Identities=14% Similarity=0.231 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 18 r~~Il~aA~~l~~~~G~~~~s~~~IA~~a 46 (237)
T 2hxo_A 18 RERIVGAAVELLDTVGERGLTFRALAERL 46 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHH
Confidence 45555666666666666666666666554
No 128
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.71 E-value=30 Score=21.56 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+++|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 11 r~~Il~AA~~lf~~~G~~~~s~~~IA~~ 38 (203)
T 2np5_A 11 PERLAAALFDVAAESGLEGASVREVAKR 38 (203)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHH
Confidence 3455555666666666666666666554
No 129
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=41.59 E-value=43 Score=21.24 Aligned_cols=29 Identities=7% Similarity=0.139 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 16 R~~Il~AA~~lf~~~G~~~~s~~~IA~~A 44 (208)
T 3v6g_A 16 RQAIVEAAERVIARQGLGGLSHRRVAAEA 44 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 46677778888888888888888887764
No 130
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=41.55 E-value=41 Score=21.70 Aligned_cols=29 Identities=14% Similarity=0.384 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 25 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 53 (231)
T 2zcx_A 25 EEAILDAARELGTERGIREITLTDIAATV 53 (231)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHh
Confidence 44566667777777787777877776654
No 131
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=41.40 E-value=12 Score=22.54 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhcChHH-HHHHHH
Q 042650 8 ERLKELLRERLIECGWRD-EMKSLC 31 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D-~vr~~~ 31 (81)
++|-+--..-+.+.|+.. .+++.|
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia 35 (195)
T 3pas_A 11 IAFLEATVREVADHGFSATSVGKIA 35 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHcChHhcCHHHHH
Confidence 444444445555555542 344444
No 132
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=40.84 E-value=41 Score=21.54 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 10 ~~Il~AA~~lF~e~G~~~ts~~~IA~~ 36 (235)
T 2fbq_A 10 ERILDAAEQLFAEKGFAETSLRLITSK 36 (235)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHH
Confidence 344455555566666666666655543
No 133
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=40.75 E-value=87 Score=22.79 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCh-----HHHHHHHHHHHHHh-----hCCCCCCHHHHHHhhchhhhccCCHHHHHH
Q 042650 12 ELLRERLIECGW-----RDEMKSLCRAYTRK-----KGRNNVTVDDLVHVITPKGRASVPDPVKAE 67 (81)
Q Consensus 12 ~~L~~rL~e~GW-----~D~vr~~~re~i~~-----~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~E 67 (81)
..++.+|.+.|| .+++++.+++.+.+ .....++.+++++.|-.. .|+.++++
T Consensus 297 ~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~----~~~~l~~q 358 (368)
T 1w85_A 297 VRFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEE----LPFNLKEQ 358 (368)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSCSS----CCHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccCC----CChHHHHH
Confidence 367889999996 34555556655543 345678999999999753 56666544
No 134
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=40.69 E-value=12 Score=22.90 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhcChH
Q 042650 8 ERLKELLRERLIECGWR 24 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~ 24 (81)
++|-+--..-+.+.|+.
T Consensus 23 ~~Il~aA~~l~~~~G~~ 39 (203)
T 3mnl_A 23 KRILDATMAIASKGGYE 39 (203)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34444444445555544
No 135
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=40.54 E-value=42 Score=20.70 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcCh
Q 042650 8 ERLKELLRERLIECGW 23 (81)
Q Consensus 8 erL~~~L~~rL~e~GW 23 (81)
++|-+--.+-+.+.|+
T Consensus 16 ~~Il~aA~~lf~~~G~ 31 (196)
T 2qwt_A 16 ARVLEVAYDTFAAEGL 31 (196)
T ss_dssp HHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4444445555556665
No 136
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=39.86 E-value=43 Score=22.37 Aligned_cols=27 Identities=7% Similarity=0.133 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+++|.+.
T Consensus 44 ~~Il~AA~~lf~e~G~~~~S~~~IA~~ 70 (273)
T 3c07_A 44 ALILETAMRLFQERGYDRTTMRAIAQE 70 (273)
T ss_dssp HHHHHHHHHHHHHTCSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 445555556666666666666655543
No 137
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.85 E-value=33 Score=21.34 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|=+.|.+.+.++|.+.+|+++|.+.
T Consensus 15 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 41 (200)
T 2hyj_A 15 GRILGRAAEIASEEGLDGITIGRLAEE 41 (200)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 445555666666667666676666554
No 138
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=39.34 E-value=33 Score=22.10 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+.+|.++
T Consensus 5 ~~Il~aA~~l~~~~G~~~~s~~~IA~~ 31 (209)
T 3bqy_A 5 ARTVQTALDLLNESGLDTLTMRRLAQA 31 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 344455555555555555555555444
No 139
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=39.24 E-value=35 Score=21.45 Aligned_cols=27 Identities=7% Similarity=0.316 Sum_probs=17.0
Q ss_pred HHHHHHHHHH-HHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAY-TRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~-i~~~g~~~v~~~~L~~~ 51 (81)
+.+.+.+.+. +.++|.+.+|+.++.+.
T Consensus 22 ~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~ 49 (185)
T 3o60_A 22 TKLYTVLERFYVEDRTFESISIKDLCEQ 49 (185)
T ss_dssp HHHHHHHHHHHHTTCCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 3455556666 56677777777766654
No 140
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.18 E-value=43 Score=20.55 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 15 RERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 15 ~~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
.+.|.+.|.+ ..-|...-+.+.+.+...+|.++|++.+..+.-.+=+..|++-|
T Consensus 6 ~~~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L 60 (136)
T 1mzb_A 6 NSELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVL 60 (136)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 3456666764 56677777777754325789999999997665454455665544
No 141
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=39.04 E-value=33 Score=21.02 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhcCh
Q 042650 7 KERLKELLRERLIECGW 23 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW 23 (81)
+++|-+--..-+.+.|+
T Consensus 18 r~~Il~aA~~lf~~~G~ 34 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGA 34 (199)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 45555555666666676
No 142
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=39.02 E-value=33 Score=22.10 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhcChH-HHHHHHH
Q 042650 8 ERLKELLRERLIECGWR-DEMKSLC 31 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~-D~vr~~~ 31 (81)
++|-+--..-+.+.|+. -.++++|
T Consensus 28 ~~Il~aA~~l~~~~G~~~~s~~~IA 52 (211)
T 3fiw_A 28 ETVITEALDLLDEVGLDGVSTRRLA 52 (211)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHH
Confidence 34444444444445544 2444444
No 143
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.88 E-value=43 Score=22.23 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 21 r~~Il~AA~~l~~e~G~~~~S~~~IA~~a 49 (243)
T 2g7l_A 21 RRWIVDTAVALMRAEGLEKVTMRRLAQEL 49 (243)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCchhcCHHHHHHHH
Confidence 45666677777777777777777776654
No 144
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=38.35 E-value=34 Score=21.79 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 42 ~~Il~AA~~lf~e~G~~~~tv~~IA~~A 69 (214)
T 2guh_A 42 SLIVDAAGRAFATRPYREITLKDIAEDA 69 (214)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhcCHHHHHHHh
Confidence 4455556666666676667777666543
No 145
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=38.24 E-value=14 Score=22.53 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhcChH
Q 042650 9 RLKELLRERLIECGWR 24 (81)
Q Consensus 9 rL~~~L~~rL~e~GW~ 24 (81)
+|-+--..-+.+.|+.
T Consensus 7 ~Il~aa~~l~~~~G~~ 22 (189)
T 3geu_A 7 KIIDNAITLFSEKGYD 22 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc
Confidence 3344444444444543
No 146
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.18 E-value=73 Score=19.94 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 12 ELLRERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 12 ~~L~~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
+.+.+.|.+.|.+ ..-|...-+.+.+.+ ..+|.++|++.+..+.-.+=+..|++-|
T Consensus 12 ~~~~~~l~~~g~r~T~qR~~IL~~l~~~~-~~~sa~ei~~~l~~~~~~is~aTVYR~L 68 (150)
T 2xig_A 12 ERLRMSIKKNGLKNSKQREEVVSVLYRSG-THLSPEEITHSIRQKDKNTSISSVYRIL 68 (150)
T ss_dssp HHHHHHHHHCC--CHHHHHHHHHHHHHCS-SCBCHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 3456678888876 667777778887654 5799999999997665444455665544
No 147
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=37.76 E-value=41 Score=22.79 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHhhchhhhc------cCCHHHHHHHHHHHHHHhh
Q 042650 40 RNNVTVDDLVHVITPKGRA------SVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~------~VP~~vk~Ell~~Ir~fL~ 77 (81)
.+++++++|+..+.+.-.+ .-+++++++|+..|+....
T Consensus 81 ~~~~~l~eLi~~~~~~i~~~~~~~~~~~~e~k~~I~~~i~~~~~ 124 (192)
T 1zx4_A 81 NKNLEFDQLIQNISPEINDILSINEMAEDEVKNKILRLITKEAS 124 (192)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHH
Confidence 4577899999998877443 5788899999999998874
No 148
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=37.46 E-value=49 Score=22.40 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 29 r~~Il~AA~~L~~e~G~~~~Smr~IA~~a 57 (267)
T 2y2z_A 29 RDQIVRAAVKVADTEGVEAASMRRVAAEL 57 (267)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 34555666666666666666666665543
No 149
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=37.41 E-value=15 Score=22.40 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 042650 7 KERLKELLRERLIECGWR-DEMKSLCR 32 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~-D~vr~~~r 32 (81)
+++|-+--..-+.+.|+. -.+++.|+
T Consensus 16 r~~Il~aA~~l~~~~G~~~~t~~~IA~ 42 (191)
T 4aci_A 16 RQEILEGARRCFAEHGYEGATVRRLEE 42 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHH
Confidence 445555555566666654 24444443
No 150
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=36.88 E-value=16 Score=22.18 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhCCCCC-------CHHHHHHhhchhh
Q 042650 7 KERLKELLRERLIECGWR-DEMKSLCRAYTRKKGRNNV-------TVDDLVHVITPKG 56 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~-D~vr~~~re~i~~~g~~~v-------~~~~L~~~i~P~A 56 (81)
+++|-+--..-+.+.|+. -.+++.|++ -|+... |-++|+..+.-..
T Consensus 9 r~~Il~aa~~l~~~~G~~~~t~~~IA~~----agvs~~tlY~~F~sK~~L~~~~~~~~ 62 (186)
T 2jj7_A 9 MENILKAAKKKFGERGYEGTSIQEIAKE----AKVNVAMASYYFNGKENLYYEVFKKY 62 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH----HTSCHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHH----hCCChhhhhhhcCCHHHHHHHHHHHH
Confidence 345555556666666765 344444433 343222 4456666655544
No 151
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=36.82 E-value=20 Score=22.91 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
|-+.+.+.+.++|.+++|+++|.+.
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~ 59 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKA 59 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHH
Confidence 4445555555566666666555544
No 152
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=36.75 E-value=16 Score=22.25 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 042650 7 KERLKELLRERLIECGWRD-EMKSLCRA 33 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D-~vr~~~re 33 (81)
+++|-+--..-+.+.|+.. .+++.|++
T Consensus 13 r~~Il~aA~~lf~~~G~~~~ti~~IA~~ 40 (204)
T 3eup_A 13 RQFIIESTAPVFNVKGLAGTSLTDLTEA 40 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHH
Confidence 3445555555566666654 55555543
No 153
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=36.34 E-value=37 Score=21.84 Aligned_cols=25 Identities=4% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhh-CCCCCCHHHHHH
Q 042650 26 EMKSLCRAYTRKK-GRNNVTVDDLVH 50 (81)
Q Consensus 26 ~vr~~~re~i~~~-g~~~v~~~~L~~ 50 (81)
.|-+.+.+.+.++ |.+.+|+.+|.+
T Consensus 9 ~Il~aA~~l~~~~~G~~~~s~~~IA~ 34 (220)
T 1z0x_A 9 TIIAAAFSLLEKSPTLEQLSMRKVAK 34 (220)
T ss_dssp HHHHHHHHHHHHSCCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHH
Confidence 3344444444444 444444444443
No 154
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=35.79 E-value=17 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhcCh
Q 042650 8 ERLKELLRERLIECGW 23 (81)
Q Consensus 8 erL~~~L~~rL~e~GW 23 (81)
++|-+--..-+.+-|+
T Consensus 17 ~~Il~aa~~l~~~~G~ 32 (215)
T 3e7q_A 17 ALLIEATLACLKRHGF 32 (215)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc
Confidence 3344444444444454
No 155
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=35.12 E-value=55 Score=20.90 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcChH
Q 042650 8 ERLKELLRERLIECGWR 24 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~ 24 (81)
++|.+--..-+.+.||.
T Consensus 10 ~~Il~aA~~l~~~~G~~ 26 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWE 26 (213)
T ss_dssp HHHHHHHHHHHHHSCST
T ss_pred HHHHHHHHHHHHHcCcc
Confidence 34444444455555553
No 156
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=34.93 E-value=41 Score=22.29 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+.+|+.+|.++
T Consensus 9 ~~Il~AA~~l~~~~G~~~~S~r~IA~~ 35 (234)
T 2opt_A 9 DRIVVTALGILDAEGLDALSMRRLAQE 35 (234)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHH
Confidence 445555555555566555555555544
No 157
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.79 E-value=44 Score=20.96 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|=+.|.+.+.++|.+.+|+++|.++.
T Consensus 11 r~~Il~aA~~lf~~~G~~~~s~~~IA~~a 39 (209)
T 2gfn_A 11 RRALADAVLALIAREGISAVTTRAVAEES 39 (209)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 34555666677777777777777766554
No 158
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=34.58 E-value=36 Score=20.84 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHH-HhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYT-RKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i-~~~g~~~v~~~~L~~~ 51 (81)
++.+-+.+.+.+ .++|.+++|+++|.++
T Consensus 26 r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~ 54 (212)
T 3nxc_A 26 REEILQSLALMLESSDGSQRITTAKLAAS 54 (212)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChhhcCHHHHHHH
Confidence 344555555544 4556666666666554
No 159
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=34.48 E-value=44 Score=21.16 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHH
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVH 50 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~ 50 (81)
+.|-+.+.+.+.++|.+.+|+++|.+
T Consensus 38 ~~Il~AA~~lf~~~G~~~~s~~~IA~ 63 (237)
T 3kkd_A 38 QAILDAAMRLIVRDGVRAVRHRAVAA 63 (237)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhcCHHHHHH
Confidence 34444444444445544444444443
No 160
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=34.36 E-value=38 Score=22.38 Aligned_cols=29 Identities=7% Similarity=0.117 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 31 r~~Il~aA~~l~~~~G~~~~s~~~IA~~a 59 (241)
T 2hxi_A 31 TEQILDAAAELLLAGDAETFSVRKLAASL 59 (241)
T ss_dssp HHHHHHHHHHHHSSSSCCCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHh
Confidence 46677777888888888888888877664
No 161
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=34.36 E-value=51 Score=19.26 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=27.1
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 44 TVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 44 ~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
++++|+.+|-|. ..+.++|..=|+.---+|+++
T Consensus 10 ~L~~Lv~~idp~--~~ld~~vee~ll~lADdFV~~ 42 (76)
T 1h3o_B 10 KLQDLVREVDPN--EQLDEDVEEMLLQIADDFIES 42 (76)
T ss_dssp HHHHHHHHHCSS--CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 688999999885 678888888888877888875
No 162
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=34.22 E-value=61 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=15.8
Q ss_pred hhccCCHHHHHHHHHHHHH
Q 042650 56 GRASVPDPVKAELLQRIRS 74 (81)
Q Consensus 56 Ar~~VP~~vk~Ell~~Ir~ 74 (81)
-+.+||+.|.+.|..++..
T Consensus 162 i~~lVP~~V~~~i~~k~~~ 180 (187)
T 3k9w_A 162 VSKFVFPSVEKWLTEKVAA 180 (187)
T ss_dssp CTTTSCHHHHHHHHHHHHH
T ss_pred hhHHCCHHHHHHHHHHhcc
Confidence 3679999999999888754
No 163
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=34.14 E-value=36 Score=18.42 Aligned_cols=35 Identities=29% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 42 NVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 42 ~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
..++.+|=+++. +|.+=..-.|.+|+.|+.++...
T Consensus 7 kltV~eLK~~Lk--~RGL~~~G~KadLieRL~~~~~~ 41 (51)
T 1h1j_S 7 SLTVVQLKDLLT--KRNLSVGGLKNELVQRLIKDDEE 41 (51)
T ss_dssp GCCHHHHHHHHH--HTTCCCCSSHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHH--HcCCCCCCcHHHHHHHHHHHHHh
Confidence 345555555543 23333345588888888888764
No 164
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=34.05 E-value=18 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.424 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHH
Q 042650 7 KERLKELLRERLIECGWRD-EMKSLCR 32 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D-~vr~~~r 32 (81)
+++|-+--..-+.+.|+.. .+++.|+
T Consensus 16 r~~Il~aa~~lf~~~G~~~~ti~~Ia~ 42 (156)
T 3ljl_A 16 IQKIMDAVVDQLLRLGYDKMSYTTLSQ 42 (156)
T ss_dssp HHHHHHHHHHHHHHTHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHH
Confidence 4455555556666666653 4555554
No 165
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=33.71 E-value=35 Score=22.07 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHH
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLV 49 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~ 49 (81)
|-+.+.+.+.++|...+|+.+|.
T Consensus 48 Il~AA~~lf~~~G~~~~t~~~IA 70 (255)
T 3g1o_A 48 ILATAENLLEDRPLADISVDDLA 70 (255)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHH
T ss_pred HHHHHHHHHHHcCCccCcHHHHH
Confidence 33444444444444444444443
No 166
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=33.07 E-value=44 Score=20.73 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHH
Q 042650 8 ERLKELLRERLIECGWRDEMKSLC 31 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D~vr~~~ 31 (81)
++|-+--.+-+.+.|+.-.+++.|
T Consensus 15 ~~Il~aA~~lf~~~G~~~s~~~IA 38 (224)
T 1t33_A 15 SQLIAAALAQFGEYGLHATTRDIA 38 (224)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHhCccccHHHHH
Confidence 445555555566666553344444
No 167
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.55 E-value=77 Score=19.02 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHhhCCCCCCHHHHHHh------hchhhhc-cCCHHHHHHHHHHHHHH
Q 042650 4 SGEKERLKELLRERLIECG-WRDEMKSLCRAYTRKKGRNNVTVDDLVHV------ITPKGRA-SVPDPVKAELLQRIRSF 75 (81)
Q Consensus 4 sGe~erL~~~L~~rL~e~G-W~D~vr~~~re~i~~~g~~~v~~~~L~~~------i~P~Ar~-~VP~~vk~Ell~~Ir~f 75 (81)
+.+...+.+.+...+...| |..++- ..-|++.-++.+++.. |.|.+.+ .++.+...++...|+++
T Consensus 2 ~~~~~~l~~~i~~~~~~~p~~~~~la-------~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~ 74 (121)
T 2pjp_A 2 SEEQQAIWQKAEPLFGDEPWWVRDLA-------KETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDL 74 (121)
T ss_dssp CHHHHHHHHHHGGGCSSSCEEHHHHH-------HHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHH-------HHhCCCHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHH
Confidence 3456666777766665566 655332 3334433344444433 3444455 56678889999999999
Q ss_pred hhhhc
Q 042650 76 LASTA 80 (81)
Q Consensus 76 L~~~~ 80 (81)
+..+.
T Consensus 75 ~~~~~ 79 (121)
T 2pjp_A 75 DQECG 79 (121)
T ss_dssp HHHHS
T ss_pred HHHCC
Confidence 87753
No 168
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=31.26 E-value=39 Score=21.19 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.|.+.+.++|.+.+|+++|.+..
T Consensus 27 ~~Il~aA~~lf~e~G~~~~s~~~IA~~a 54 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRFTTARVAERA 54 (214)
T ss_dssp HHHHHHHHHC------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHh
Confidence 4455556666666777777777766543
No 169
>2l81_A Enhancer of filamentation 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, cell adhesion; NMR {Homo sapiens}
Probab=30.99 E-value=54 Score=22.26 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=23.5
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHhhCCCC--CCHHHHHHhhchhhhccCCHHHHH
Q 042650 13 LLRERLIECGWRDEMKSLCRAYTRKKGRNN--VTVDDLVHVITPKGRASVPDPVKA 66 (81)
Q Consensus 13 ~L~~rL~e~GW~D~vr~~~re~i~~~g~~~--v~~~~L~~~i~P~Ar~~VP~~vk~ 66 (81)
...+-|..|||-=++ +++. +..+ -.+|.++.- -..||+++|+
T Consensus 114 ~~~~~Ld~~~Wsl~~--La~~-----~~~~~~DdLDrfVmv-----aR~vPdD~kq 157 (176)
T 2l81_A 114 QTSHDLNECSWSLNI--LAIN-----KPQNKCDDLDRFVMV-----AKTVPDDAKQ 157 (176)
T ss_dssp HHHHHHHHTTTCHHH--HTTC-----CSSCTTCHHHHHHHH-----HTTHHHHHHH
T ss_pred HHHHHHhcCCCcHHH--HccC-----CCCCCcchHHHHHHh-----hccCCHHHHH
Confidence 334678999995433 3322 2111 144554443 3689999975
No 170
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=30.22 E-value=30 Score=21.49 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=12.1
Q ss_pred HHHHHHHHHH-hhCCCCCCHHHHHHh
Q 042650 27 MKSLCRAYTR-KKGRNNVTVDDLVHV 51 (81)
Q Consensus 27 vr~~~re~i~-~~g~~~v~~~~L~~~ 51 (81)
|-+.+.+.+. ++|.+.+|+.+|.+.
T Consensus 16 Il~aa~~l~~~~~G~~~~ti~~Ia~~ 41 (220)
T 3lsj_A 16 LMSAARHLMESGRGFGSLSLREVTRA 41 (220)
T ss_dssp HHHHHHHHTTTSCCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCCHHHHHHH
Confidence 3344444445 555555555555443
No 171
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=29.63 E-value=23 Score=22.51 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLV 49 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~ 49 (81)
.|-+.+.+.+.++|.+.+|+++|.
T Consensus 34 ~Il~aA~~lf~~~G~~~~s~~~IA 57 (226)
T 2pz9_A 34 RIVAAAKEEFARHGIAGARVDRIA 57 (226)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCcHHHHH
Confidence 333444444444444444444443
No 172
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=28.87 E-value=1.2e+02 Score=22.45 Aligned_cols=57 Identities=5% Similarity=0.069 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc----CCHHHHHHHHHHHHHHhhhh
Q 042650 22 GWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS----VPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~----VP~~vk~Ell~~Ir~fL~~~ 79 (81)
.|.+.++..+......+ ...+|+...+..+....+.. =.+++|..++..+..|++..
T Consensus 92 ~l~~~l~~~~~~L~~aR-PtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~ 152 (383)
T 2a0u_A 92 EVQTFLLTSCDFVMTSR-PTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND 152 (383)
T ss_dssp HHHHHHHHHHHHHTTSC-CSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777776555444 67788888888887766642 34689999999999998653
No 173
>4fbj_A CIF, hypothetical protein; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Photorhabdus luminescens subsp} PDB: 3gqj_A
Probab=28.31 E-value=71 Score=22.82 Aligned_cols=41 Identities=15% Similarity=0.337 Sum_probs=31.6
Q ss_pred HHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHH
Q 042650 32 RAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIR 73 (81)
Q Consensus 32 re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir 73 (81)
...+..+|.+.+++++|-.-+ .+-=.++|++++.+++..|-
T Consensus 167 eDWm~~rg~~pIsLd~l~~~l-s~~F~~ms~d~~~~lIA~if 207 (261)
T 4fbj_A 167 ADWLNSRGKDAVSLNKLKKLL-SREFNLLSDDEKRALISETL 207 (261)
T ss_dssp HHHHHHGGGSEEEHHHHHHHH-SGGGGGSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCccHHHHHHHH-HHhhccCCchHHHHHHHHHH
Confidence 356778899999999987733 33347899999999988764
No 174
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=28.18 E-value=26 Score=21.46 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHH
Q 042650 7 KERLKELLRERLIECGWRD-EMKSLCR 32 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D-~vr~~~r 32 (81)
+++|-+--.+-+.+.|+.. .+++.|+
T Consensus 10 r~~Il~AA~~l~~~~G~~~~t~~~IA~ 36 (195)
T 3frq_A 10 DDEVLEAATVVLKRCGPIEFTLSGVAK 36 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccCCHHHHHH
Confidence 4555555555666666632 3444443
No 175
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.10 E-value=27 Score=21.98 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHH
Q 042650 7 KERLKELLRERLIECGWR-DEMKSLC 31 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~-D~vr~~~ 31 (81)
+++|-+--.+-+.+.|+. -.+++.|
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA 30 (208)
T 2g3b_A 5 RDAILKASATAIAQRGIRGLRVNDVA 30 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHH
Confidence 344444455555566653 2344444
No 176
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=27.59 E-value=74 Score=18.43 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
|+|++.|+.... +.+..+++..+.+|.-.||.|
T Consensus 38 ~qv~eIA~~K~~--dl~a~~l~~a~k~I~GTArSm 70 (76)
T 1hc8_A 38 DKVREIAELKMP--DLNAASIEAAMRMIEGTARSM 70 (76)
T ss_dssp HHHHHHHHHSGG--GCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcC
Confidence 566666654332 345567777777777776654
No 177
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=27.45 E-value=29 Score=21.22 Aligned_cols=27 Identities=7% Similarity=0.114 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
+.|-+.+.+.+.++|.+++|++++.++
T Consensus 21 ~~Il~aA~~lf~~~G~~~~s~~~IA~~ 47 (212)
T 3loc_A 21 KAILSAALDTFSQFGFHGTRLEQIAEL 47 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHH
Confidence 344445555555666555666655554
No 178
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=27.19 E-value=1.1e+02 Score=18.52 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCh-HHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhh
Q 042650 9 RLKELLRERLIECGW-RDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGR 57 (81)
Q Consensus 9 rL~~~L~~rL~e~GW-~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar 57 (81)
.+..-+-....+-|| +..|+......|...|..-.|+++|+..+.....
T Consensus 25 ~m~s~vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~~e 74 (104)
T 2kna_A 25 IFQNPMVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNAQK 74 (104)
T ss_dssp HHHCTHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 344445555666677 4667788888888888777899999999875543
No 179
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=27.07 E-value=1.1e+02 Score=19.45 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCH----HHHHHHHHHHH
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPD----PVKAELLQRIR 73 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~----~vk~Ell~~Ir 73 (81)
-|+.||.++..-.....+..+|-.+|..+..-|... +|-+-++.+|-
T Consensus 37 trdfcrailsdleqsgfttselekeiadkvkimfaqgyhievlqlilekil 87 (146)
T 3zta_A 37 TRDFCRAILSDLEQSGFTTSELEKEIADKVKIMFAQGYHIEVLQLILEKIL 87 (146)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 356788887665555667778888887776666554 45555555553
No 180
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=26.93 E-value=29 Score=21.50 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHhcChH-HHHHHHHH
Q 042650 6 EKERLKELLRERLIECGWR-DEMKSLCR 32 (81)
Q Consensus 6 e~erL~~~L~~rL~e~GW~-D~vr~~~r 32 (81)
.+++|-+--.+-+.+.|+. -.+++.|+
T Consensus 6 ~r~~Il~aA~~lf~~~Gy~~~s~~~IA~ 33 (202)
T 2id6_A 6 KRDAILKAAVEVFGKKGYDRATTDEIAE 33 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHH
Confidence 3556666666666777764 24444443
No 181
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=26.62 E-value=29 Score=22.30 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhcChH
Q 042650 7 KERLKELLRERLIECGWR 24 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~ 24 (81)
+++|-+--..-+.+.|..
T Consensus 5 r~~Il~aA~~l~~~~G~~ 22 (207)
T 2xpw_A 5 RESVIDAALELLNETGID 22 (207)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 344444444445555543
No 182
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=26.37 E-value=1.5e+02 Score=20.04 Aligned_cols=62 Identities=23% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHH
Q 042650 7 KERLKELLRERLIECG-------WRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQ 70 (81)
Q Consensus 7 ~erL~~~L~~rL~e~G-------W~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~ 70 (81)
+++++..+..|+.|+. -.|-...++..++.++ ....+....+..+ |.+-...|++--.+++.
T Consensus 24 ~~~~~~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqq-ts~~~~~~a~~~L-p~~l~~~~~eeL~~~Ir 92 (219)
T 3n0u_A 24 REEAKPLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTAN-WSAEGGIRAQKEI-GKGFVHLPLEELAEKLR 92 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTT-SCHHHHHHHHHHH-TTHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCC-CCHHHHHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 4677888888999982 3456788888888654 2333556666666 77777777766555543
No 183
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=26.30 E-value=30 Score=22.33 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCh
Q 042650 8 ERLKELLRERLIECGW 23 (81)
Q Consensus 8 erL~~~L~~rL~e~GW 23 (81)
++|-+--..-+.+.|+
T Consensus 21 ~~Il~AA~~lf~~~G~ 36 (251)
T 3npi_A 21 DTVLDIALSLFSELGF 36 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCc
Confidence 3444444445555554
No 184
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=26.20 E-value=1.1e+02 Score=18.08 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHH
Q 042650 17 RLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQ 70 (81)
Q Consensus 17 rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~ 70 (81)
++...+..++++...+. +...|...++.++|..-+...+...++++--.+++.
T Consensus 32 ~~~~~~~~~~l~~~F~~-~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 32 KMDVEEFVSELCKGFSL-LADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp --CHHHHHHHHHHHHHH-HSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HccccchHHHHHHHHHH-HCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33333344455544432 233345567777777766554432445544444443
No 185
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=26.16 E-value=1.5e+02 Score=21.40 Aligned_cols=56 Identities=11% Similarity=0.288 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhc-----cCCHHHHHHHHHHHHHHhhh
Q 042650 22 GWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRA-----SVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~-----~VP~~vk~Ell~~Ir~fL~~ 78 (81)
+|.+.++..+...... ....+|+...+..+....+. .=.+++|+.++..+..|++.
T Consensus 63 ~l~~~l~~~~~~L~~a-RPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e 123 (338)
T 3a11_A 63 EFWKEMKQAAKILFET-RPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN 123 (338)
T ss_dssp HHHHHHHHHHHHHHTT-CTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 4566777776655444 46778888888777665543 22347889999999999865
No 186
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=25.77 E-value=58 Score=26.02 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=23.4
Q ss_pred hcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhh
Q 042650 20 ECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGR 57 (81)
Q Consensus 20 e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar 57 (81)
+.+| +.++..+..+....+....++.+||..|---+.
T Consensus 2 ~~~W-~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~ 38 (760)
T 1ldj_A 2 DQIW-DDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCT 38 (760)
T ss_dssp HHHH-HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred hhhH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 3467 467777777776444555556788887755443
No 187
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=25.25 E-value=1e+02 Score=20.42 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.3
Q ss_pred hccCCHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRI 72 (81)
Q Consensus 57 r~~VP~~vk~Ell~~I 72 (81)
+.+||+.|.+.|.++.
T Consensus 161 ~~lVP~~V~~~l~~~~ 176 (177)
T 3nbk_A 161 SELLPEPVNRRLRDRL 176 (177)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred hHhCCHHHHHHHHHHh
Confidence 6899999988887664
No 188
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=25.21 E-value=74 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|.+.+|+++|.+..
T Consensus 123 ~~il~aa~~l~~~~G~~~~T~~~IA~~A 150 (311)
T 4ich_A 123 RRILETAWRLIARRGYHNVRIHDIASEL 150 (311)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHh
Confidence 4455566666666776667776666543
No 189
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.15 E-value=59 Score=20.37 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.3
Q ss_pred HHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 16 ERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 16 ~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
+.|.+.|.+ ..-|...-+.+.+.+...+|.++|++.+....-.+=+..|++-|
T Consensus 6 ~~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L 59 (150)
T 2w57_A 6 QALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVL 59 (150)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345666654 55666777777654314789999999997665444455565544
No 190
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=25.04 E-value=81 Score=17.81 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
|+|++.|+.... +.+..+++..+.+|.-.||.|
T Consensus 33 ~qv~eIA~~K~~--dl~a~~l~~a~k~I~GTArSm 65 (67)
T 1qa6_A 33 DKVREIAELKMP--DLNAASIEAAMRMIEGTARSM 65 (67)
T ss_dssp THHHHHHHHHGG--GCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhcccCHHHHHHHHHHHHHhc
Confidence 456666654332 345556777777776666643
No 191
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=24.68 E-value=96 Score=17.11 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 39 GRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 39 g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
.++.++..++.+-+......-+.....+..+..++.|+.
T Consensus 49 ~l~~It~~~i~~~~~~l~~~~~s~~t~~~~~~~l~~~~~ 87 (117)
T 2kkp_A 49 PLKKLQPADIQRLYASKLESGLSPTRVRYIHVVLHEAMS 87 (117)
T ss_dssp CTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EHHHCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 367788888877776655444556666678888888874
No 192
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=24.62 E-value=33 Score=20.00 Aligned_cols=30 Identities=7% Similarity=0.312 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhhCC-CCCCHHHHHHhhc
Q 042650 24 RDEMKSLCRAYTRKKGR-NNVTVDDLVHVIT 53 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~-~~v~~~~L~~~i~ 53 (81)
.+.|+.+.+++|.+.+. ..+|=+.|.+.+.
T Consensus 18 ~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~ 48 (76)
T 2ahq_A 18 QGELMKLIKEIVENEDKRKPYSDQEIANILK 48 (76)
T ss_dssp HHHHHHHHHHHGGGCCSSSCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 36799999999987653 3457777777764
No 193
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=24.36 E-value=94 Score=18.41 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred HHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 45 VDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 45 ~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
=.+|+.=++ ++.-.|+....+|+.+|++|...
T Consensus 54 D~DL~~w~~--g~~~~p~~~~~~l~~~I~~~~~~ 85 (91)
T 1x6i_A 54 DPDLFNWLM--NHGKPADAELEMMVRLIQTRNRE 85 (91)
T ss_dssp HHHHHHHHT--TSSBCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHhc
Confidence 357777776 45678998999999999998754
No 194
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=24.29 E-value=1.7e+02 Score=19.84 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHHHHHhcC----hHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchh------hhc-cCCHHHHHHHHHHH
Q 042650 4 SGEKERLKELLRERLIECG----WRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPK------GRA-SVPDPVKAELLQRI 72 (81)
Q Consensus 4 sGe~erL~~~L~~rL~e~G----W~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~------Ar~-~VP~~vk~Ell~~I 72 (81)
+.+.+.+.+.|...+...| |.+++- ..-|.+.-.+.+++..+.-. +.+ .+..+...++...|
T Consensus 136 ~~~~~~~~~~i~~~~~~~g~~pp~~~dl~-------~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~~~~~~~~~~l 208 (258)
T 1lva_A 136 SETQKKLLKDLEDKYRVSRWQPPSFKEVA-------GSFNLDPSELEELLHYLVREGVLVKINDEFYWHRQALGEAREVI 208 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCCBHHHHH-------HHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCHHHHH-------hHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcHHHHHHHHHHH
Confidence 3466677777777777777 544432 22232222333333333222 233 35678888888888
Q ss_pred HHHhhhh
Q 042650 73 RSFLAST 79 (81)
Q Consensus 73 r~fL~~~ 79 (81)
++++ .+
T Consensus 209 ~~~~-~~ 214 (258)
T 1lva_A 209 KNLA-ST 214 (258)
T ss_dssp HHHH-TT
T ss_pred HHHH-hc
Confidence 8887 54
No 195
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=24.05 E-value=22 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=18.1
Q ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhC
Q 042650 3 ESGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKG 39 (81)
Q Consensus 3 esGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g 39 (81)
++|+.+.=.+.|..-..+++=...+|..--.+|++++
T Consensus 129 ekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd 165 (211)
T 3bqo_A 129 ENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKD 165 (211)
T ss_dssp HTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTC
T ss_pred HccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccC
Confidence 4555555555555555555555555555555666654
No 196
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.03 E-value=1.3e+02 Score=19.06 Aligned_cols=17 Identities=35% Similarity=0.765 Sum_probs=11.1
Q ss_pred HHHHHHHHhcChHHHHH
Q 042650 12 ELLRERLIECGWRDEMK 28 (81)
Q Consensus 12 ~~L~~rL~e~GW~D~vr 28 (81)
+.+-.+|.+.||.|+-+
T Consensus 52 e~vl~~l~~~g~ldD~r 68 (162)
T 3dfg_A 52 QAAVERLAGEGWQDDVR 68 (162)
T ss_dssp HHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHcCCCCHHH
Confidence 34445677778877764
No 197
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=23.40 E-value=1.3e+02 Score=18.04 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=32.6
Q ss_pred HhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 36 RKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 36 ~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
...| ..+|.++|++.|-+.. ..+.+..-.-.+.++|..|..
T Consensus 57 ~~~g-~vvsre~L~~~vW~~~-~~~~~~tl~~~I~rLRkkL~~ 97 (121)
T 2hwv_A 57 KHIG-QVMTREHLLQTVWGYD-YFGDVRTVDVTVRRLREKIED 97 (121)
T ss_dssp HTTT-CCBCHHHHHHHHTCGG-GTTCHHHHHHHHHHHHHHHCS
T ss_pred HcCC-eEEcHHHHHHHHcCCC-CCCCccHHHHHHHHHHHHHhh
Confidence 4344 6889999999998764 346788888899999999864
No 198
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=23.21 E-value=49 Score=19.42 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=11.3
Q ss_pred ccCCHHHHHHHHHH
Q 042650 58 ASVPDPVKAELLQR 71 (81)
Q Consensus 58 ~~VP~~vk~Ell~~ 71 (81)
.-||+.|++|+-..
T Consensus 47 tgvpeqvrkelake 60 (85)
T 2kl8_A 47 TGVPEQVRKELAKE 60 (85)
T ss_dssp ESCCHHHHHHHHHH
T ss_pred ecChHHHHHHHHHH
Confidence 45999999998754
No 199
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=23.08 E-value=1.1e+02 Score=19.77 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.7
Q ss_pred hccCCHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRI 72 (81)
Q Consensus 57 r~~VP~~vk~Ell~~I 72 (81)
+.+||+.|.+.|.++.
T Consensus 144 ~~lvP~~V~~~i~~~~ 159 (168)
T 3f3m_A 144 SEFVPPYVEKALKKKF 159 (168)
T ss_dssp TTTSCHHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHhh
Confidence 6799999988776654
No 200
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=23.07 E-value=72 Score=25.45 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=39.5
Q ss_pred HhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 19 IECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 19 ~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
.+.+|. .++.....+...+ ..+.+|++||..|.--......+.+++.+-..+.+++.
T Consensus 59 ~e~~W~-~L~~ai~~I~~~~-~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~ 115 (759)
T 2hye_C 59 TQDTWR-KLHEAVRAVQSST-SIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQ 115 (759)
T ss_dssp TTTHHH-HHHHHHHTTSTTC-CCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 366784 6777777666643 45778999999987777766666666666666666553
No 201
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=22.96 E-value=48 Score=21.63 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcChHHHH
Q 042650 8 ERLKELLRERLIECGWRDEM 27 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D~v 27 (81)
+..-+.+-.+|.+.||.|+-
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~ 68 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDK 68 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHcCCCCHH
Confidence 34445566788888888774
No 202
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=22.95 E-value=62 Score=16.65 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhc
Q 042650 66 AELLQRIRSFLASTA 80 (81)
Q Consensus 66 ~Ell~~Ir~fL~~~~ 80 (81)
+.+-++|++|+...+
T Consensus 18 kkIgQkIKdFf~~l~ 32 (37)
T 2k6o_A 18 KRIVQRIKDFLRNLV 32 (37)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 357788999987643
No 203
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=22.95 E-value=1.3e+02 Score=17.87 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=32.1
Q ss_pred HhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 36 RKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 36 ~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
...| ..+|.++|++.|-+.. ..+.+..-.-.+.++|..|..
T Consensus 55 ~~~g-~vvsre~L~~~vW~~~-~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 55 SKKG-YVFSRESIAIESESIN-PESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp HHCC-CEECHHHHHHHTCCSS-CTTCHHHHHHHHHHHHHHHHH
T ss_pred HcCC-cEEcHHHHHHHHcCCC-CCCchhHHHHHHHHHHHHhhc
Confidence 4444 6789999999997754 245778888899999999965
No 204
>2e67_A Hypothetical protein TTHB029; NPPSFA, national project on protein ST and functional analyses, structural genomics; 2.90A {Thermus thermophilus}
Probab=22.87 E-value=46 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhh
Q 042650 58 ASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 58 ~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
...+++|+.|+-.||..|++.
T Consensus 98 ~~~~~ev~~El~AQi~~f~~~ 118 (264)
T 2e67_A 98 KARAEEVERELKAQIQAAAKL 118 (264)
T ss_dssp HCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999863
No 205
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=22.83 E-value=38 Score=21.84 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcChH-HHHHHHHH
Q 042650 7 KERLKELLRERLIECGWR-DEMKSLCR 32 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~-D~vr~~~r 32 (81)
+++|-+--..-+.+.|+. =.++..|+
T Consensus 6 r~~Il~aA~~l~~~~G~~~~s~~~IA~ 32 (207)
T 2vpr_A 6 KEQVIDNALILLNEVGIEGLTTRKLAQ 32 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHH
Confidence 455555555566666654 24444443
No 206
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=22.76 E-value=1.9e+02 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred ccCCHHHHHHHHHHHHHHhhhh
Q 042650 58 ASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 58 ~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
..+|++.|++++.+|.+|+..-
T Consensus 318 sf~~~~~K~~l~~~~~~~~~~~ 339 (343)
T 3rys_A 318 SFASDARKAVLLDEVTEWVKAS 339 (343)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhh
Confidence 5689999999999999998653
No 207
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=22.64 E-value=99 Score=18.20 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 042650 2 IESGEKERLKELLRERLIECGWRDEMKSLCRAYTRK 37 (81)
Q Consensus 2 vesGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~ 37 (81)
+..++.+.+.+.+..-+.....+.++.+.+++.++.
T Consensus 122 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~ 157 (166)
T 3qhp_A 122 FEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALN 157 (166)
T ss_dssp ECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 456778888888888888777888888888887643
No 208
>1ug8_A Poly(A)-specific ribonuclease; R3H domain, poly(A)-specific 3'-exoribonuclease, PARN, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.68.7.1
Probab=22.47 E-value=61 Score=19.51 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 042650 63 PVKAELLQRIRSFLASTA 80 (81)
Q Consensus 63 ~vk~Ell~~Ir~fL~~~~ 80 (81)
..-.++..+|.+||.+..
T Consensus 11 ~~id~i~~kIe~FL~s~~ 28 (87)
T 1ug8_A 11 KFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 345788999999998764
No 209
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=22.06 E-value=1.1e+02 Score=16.94 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 40 RNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
++.++..++.+-+......-+.....+..+..++.|+.
T Consensus 48 l~~it~~~i~~~~~~l~~~g~s~~t~~~~~~~l~~~~~ 85 (118)
T 2kd1_A 48 LAKLTSLHMQNYVNSLRDEGLKRGTIEKIIKVIRNSLE 85 (118)
T ss_dssp GGGCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 55677777777666554433556666677888888774
No 210
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=22.01 E-value=78 Score=17.67 Aligned_cols=35 Identities=9% Similarity=0.134 Sum_probs=29.9
Q ss_pred CCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 39 GRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 39 g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
|.....|.....+..|.+..+ .++|..|..+|...
T Consensus 44 G~A~~af~~~~~~w~~~~~~~------~~~L~~i~~~l~~~ 78 (94)
T 3fav_B 44 GSGSEAYQGVQQKWDATATEL------NNALQNLARTISEA 78 (94)
T ss_dssp CTTCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 667779999999999999987 78888888888764
No 211
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=21.83 E-value=97 Score=18.24 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCCCHHHHHHhh
Q 042650 31 CRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 31 ~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.+.|+++| .+++.+|.+..
T Consensus 7 Il~~L~~~g--~vsv~eLA~~l 26 (87)
T 2k02_A 7 VRDMLALQG--RMEAKQLSARL 26 (87)
T ss_dssp HHHHHHHSC--SEEHHHHHHHT
T ss_pred HHHHHHHcC--CCcHHHHHHHH
Confidence 456677775 78999998887
No 212
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.81 E-value=1.2e+02 Score=19.27 Aligned_cols=15 Identities=33% Similarity=0.288 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhcC
Q 042650 8 ERLKELLRERLIECG 22 (81)
Q Consensus 8 erL~~~L~~rL~e~G 22 (81)
++|-+--..-+.+.|
T Consensus 14 ~~Il~aA~~l~~~~G 28 (213)
T 2g7g_A 14 ERIAEAALELVDRDG 28 (213)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444445555
No 213
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=21.76 E-value=41 Score=21.73 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhcChHH-HHHHHHHH
Q 042650 7 KERLKELLRERLIECGWRD-EMKSLCRA 33 (81)
Q Consensus 7 ~erL~~~L~~rL~e~GW~D-~vr~~~re 33 (81)
+++|-+--..-+.+.|+.. .+++.|++
T Consensus 5 r~~Il~aA~~l~~~~G~~~~s~~~IA~~ 32 (202)
T 4ac0_A 5 KSKVINSALELLNEVGIEGLTTRKLAQK 32 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 4556666666677777754 56666543
No 214
>2i5i_A UPF0249 protein EF_3048; putative cellobiose-phosphate cleavage protein, structural G joint center for structural genomics, JCSG; HET: MSE; 1.70A {Enterococcus faecalis} SCOP: c.6.2.8
Probab=21.71 E-value=51 Score=22.79 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=17.8
Q ss_pred ccCCHHHHHHHHHHHHHHhh
Q 042650 58 ASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 58 ~~VP~~vk~Ell~~Ir~fL~ 77 (81)
...+++|+.|+-.||..|++
T Consensus 100 ~~~~~ev~~El~AQi~~f~~ 119 (263)
T 2i5i_A 100 KVNLEEVYNEWDAQIISFMK 119 (263)
T ss_dssp TCCHHHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 45679999999999999987
No 215
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=21.66 E-value=92 Score=18.61 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 46 DDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 46 ~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
.||+.=++ ++.-.|+..-.+|+.+|++|...
T Consensus 53 ~DL~~W~~--g~~~~p~~~~~~lv~~I~~~~~~ 83 (94)
T 2jr5_A 53 PDLFAWVM--GHGRCENLGLAAMVDKIVAHNLS 83 (94)
T ss_dssp HHHHHHHH--TCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCCCCHHHHHHHHHHHHHhcc
Confidence 36666665 45678888999999999998653
No 216
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=21.61 E-value=1.5e+02 Score=18.07 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHV 51 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~ 51 (81)
...++.++...+++- +...++++++.+
T Consensus 60 ~~~l~~~~~~~lR~v-ig~~~ldeil~~ 86 (133)
T 4fvg_A 60 DSATRLLAQTTLRNA-LGTKNLSQILSD 86 (133)
T ss_dssp HHHHHHHHHHHHHHH-HHTSCHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-hccccHHHHHhh
Confidence 344555555555543 235689999874
No 217
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=21.56 E-value=1.3e+02 Score=22.94 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
.++..+|++.+... |+++...++.--+..--.++-|..+|+.+.+|+++
T Consensus 425 ~~w~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~y~~~ 473 (482)
T 2qxf_A 425 QRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKALWQYADE 473 (482)
T ss_dssp HHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 45566666655432 77888888876655555567788999999999865
No 218
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=21.39 E-value=79 Score=21.75 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=19.6
Q ss_pred cChHHHHHHHHHHHHHhhCCCCCCHHHH
Q 042650 21 CGWRDEMKSLCRAYTRKKGRNNVTVDDL 48 (81)
Q Consensus 21 ~GW~D~vr~~~re~i~~~g~~~v~~~~L 48 (81)
.|+++++-+.||.+++......++.+++
T Consensus 129 YggR~eI~~A~r~l~~~v~~g~l~~~~~ 156 (227)
T 2vg0_A 129 YGGRREIVDAVRALLSKELANGATAEEL 156 (227)
T ss_dssp ECHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCChhHh
Confidence 6999999999998876532234556653
No 219
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=21.27 E-value=1.2e+02 Score=17.04 Aligned_cols=32 Identities=13% Similarity=0.274 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhc
Q 042650 22 GWRDEMKSLCRAYTRKKGRNNVTVDDLVHVIT 53 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~ 53 (81)
-|.+++.+..-+.+..-|.+..+.-.+++.+-
T Consensus 9 ~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~ 40 (64)
T 1irz_A 9 LWTHELHNKFLAAVDHLGVERAVPKKILDLMN 40 (64)
T ss_dssp SSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC
Confidence 38999999999999988988888888877663
No 220
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.12 E-value=20 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHhcChH-HHHHHHHH
Q 042650 9 RLKELLRERLIECGWR-DEMKSLCR 32 (81)
Q Consensus 9 rL~~~L~~rL~e~GW~-D~vr~~~r 32 (81)
+|-+-..+-+.+.|+. -.|++.|+
T Consensus 34 ~Il~aa~~l~~~~G~~~~ti~~IA~ 58 (212)
T 2np3_A 34 AILTAARVCFAERGFDATSLRRIAE 58 (212)
T ss_dssp -CHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCcccccHHHHHH
Confidence 3444444455555554 24444443
No 221
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=20.91 E-value=88 Score=22.97 Aligned_cols=43 Identities=16% Similarity=0.351 Sum_probs=24.4
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhch
Q 042650 12 ELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITP 54 (81)
Q Consensus 12 ~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P 54 (81)
+.|..-+...||.|++.++..+.-.....+...+..+++++.+
T Consensus 276 evl~~L~~~Lg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (361)
T 1q14_A 276 EFAEQLVEELGWQEDFEKILTAQGGMGDNSKEQLLEIVHDLEN 318 (361)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHC-------CCHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChhHHHHHHHhhhccccccHHHHHHHHHhhhh
Confidence 3444445567999999998876543333334456666666655
No 222
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.77 E-value=72 Score=18.38 Aligned_cols=16 Identities=25% Similarity=0.677 Sum_probs=9.5
Q ss_pred CCCCCCHHHHHHhhch
Q 042650 39 GRNNVTVDDLVHVITP 54 (81)
Q Consensus 39 g~~~v~~~~L~~~i~P 54 (81)
|...++|++.++.+.|
T Consensus 85 ~dG~I~~~EF~~~m~P 100 (100)
T 2lv7_A 85 GDGQVDFEEFVTLLGP 100 (100)
T ss_dssp CSSSBCHHHHHHHTCC
T ss_pred CCCeEeHHHHHHHhCc
Confidence 3445677776665554
No 223
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=20.74 E-value=23 Score=25.22 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHh------------------cChHHHHHHHHHHHHHh
Q 042650 5 GEKERLKELLRERLIE------------------CGWRDEMKSLCRAYTRK 37 (81)
Q Consensus 5 Ge~erL~~~L~~rL~e------------------~GW~D~vr~~~re~i~~ 37 (81)
|+.+.|-..++..+.+ .|.++++-+.|+.++++
T Consensus 111 Gd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~ 161 (253)
T 3sgv_B 111 GDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK 161 (253)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5555555555555544 58999999999988765
No 224
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=20.71 E-value=82 Score=22.40 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.0
Q ss_pred HHhcChHHHHHHHHHHHH
Q 042650 18 LIECGWRDEMKSLCRAYT 35 (81)
Q Consensus 18 L~e~GW~D~vr~~~re~i 35 (81)
....||.|++.++.++.-
T Consensus 260 ~~~lgw~~el~~~~~~~~ 277 (285)
T 3glr_A 260 VELLGWTEEMRDLVQRET 277 (285)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhhH
Confidence 345599999999988754
No 225
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.61 E-value=91 Score=19.20 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
.-|...-+.+.+.+ ..+|.++|++.+.++...+=+..|++-|
T Consensus 14 ~qR~~Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L 55 (139)
T 3mwm_A 14 RQRAAVSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTL 55 (139)
T ss_dssp HHHHHHHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34556666776554 5789999999997665555555666554
No 226
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, lipid protein; 1.70A {Colwellia psychrerythraea}
Probab=20.43 E-value=3.2e+02 Score=21.50 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=35.0
Q ss_pred HHHhcChHH--HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCC--HHHHHHHHHHHHHHh
Q 042650 17 RLIECGWRD--EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVP--DPVKAELLQRIRSFL 76 (81)
Q Consensus 17 rL~e~GW~D--~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP--~~vk~Ell~~Ir~fL 76 (81)
.+++-||.+ .++.....++++.|.+.-++.+.+..+.-.-+-..| ++.+++++...+.++
T Consensus 304 Ei~~~gl~ev~ri~~em~~i~~~~g~~~g~~~~~~~~L~~dp~~~~~~~d~~~~~~l~~~~~~~ 367 (609)
T 3o0y_A 304 QIHQIGLDEVARISGVMNEILLAQGYTKGTVGERMVALNEEPRFLYEDSIAGREELLSDINGYI 367 (609)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHTSGGGCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhcCccccCCCCchHHHHHHHHHHHHH
Confidence 345556654 344444555666666566898888887554444444 355666665555444
No 227
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=20.37 E-value=31 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.409 Sum_probs=16.2
Q ss_pred HhcChH-----HHHHHHHHHHHHhh
Q 042650 19 IECGWR-----DEMKSLCRAYTRKK 38 (81)
Q Consensus 19 ~e~GW~-----D~vr~~~re~i~~~ 38 (81)
.+|||+ +.-+..|+.++.+.
T Consensus 126 ~qCGny~~HsL~~Ak~~A~~~L~~~ 150 (175)
T 1j6w_A 126 YQCGSYTEHSLEDAHEIAKNVIARG 150 (175)
T ss_dssp TTCTTTTSCCHHHHHHHHHHHHHHC
T ss_pred hcCCChHHCCHHHHHHHHHHHHHhc
Confidence 589998 56889999999763
No 228
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=20.37 E-value=60 Score=23.98 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHH---hcChHHHHHHHHHHHHH---hhCCCCCCHHHHHHhhc
Q 042650 6 EKERLKELLRERLI---ECGWRDEMKSLCRAYTR---KKGRNNVTVDDLVHVIT 53 (81)
Q Consensus 6 e~erL~~~L~~rL~---e~GW~D~vr~~~re~i~---~~g~~~v~~~~L~~~i~ 53 (81)
..+.|.+.++.-|. ....++..+++....-+ +.|....+++++++.+.
T Consensus 415 ~~~~l~~av~~vl~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~~~ 468 (480)
T 2vch_A 415 RREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWK 468 (480)
T ss_dssp CHHHHHHHHHHHHTSTHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 46778888887776 44566666665554433 44555567888888774
No 229
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=20.35 E-value=2e+02 Score=21.03 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccC-CHHHHHHHHHHHHHHhhh
Q 042650 22 GWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASV-PDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~V-P~~vk~Ell~~Ir~fL~~ 78 (81)
.|.+.++..+...... ....+|+...++.+....+..- .+++|..++..+..|++.
T Consensus 72 ~l~~~l~~~~~~L~~a-RPtav~l~~a~~~~~~~i~~~~~~~~~k~~l~~~~~~~~~e 128 (351)
T 1t5o_A 72 ELKEHLKKAADFLAST-RPTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEE 128 (351)
T ss_dssp HHHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3567777777655544 4577788888877766555422 347889999999999865
No 230
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.26 E-value=1.2e+02 Score=18.24 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
.-|...-+.+.+.+ ..+|.++|++.+..+.-.+=+..|++-|
T Consensus 11 ~qR~~Il~~l~~~~-~~~sa~ei~~~l~~~~~~is~~TVYR~L 52 (131)
T 2o03_A 11 RQRAAISTLLETLD-DFRSAQELHDELRRRGENIGLTTVYRTL 52 (131)
T ss_dssp HHHHHHHHHHHHCC-SCEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 44556666776543 5789999999997665444444555443
Done!