Query 042650
Match_columns 81
No_of_seqs 100 out of 144
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 14:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042650.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042650hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vcsa1 a.47.2.1 (A:8-96) Vesi 80.0 0.62 4.5E-05 26.8 2.6 65 6-76 6-73 (89)
2 d2g7la1 a.4.1.9 (A:16-83) Puta 79.3 1.7 0.00012 22.9 4.2 29 24-52 6-34 (68)
3 d2gena1 a.4.1.9 (A:6-75) Proba 76.6 2.5 0.00018 22.0 4.4 29 24-52 2-30 (70)
4 d1sxjb1 a.80.1.1 (B:231-322) R 76.1 4.5 0.00033 22.4 6.3 53 18-74 10-64 (92)
5 d2g7sa1 a.4.1.9 (A:3-76) Putat 75.9 1.7 0.00012 23.1 3.6 29 24-52 6-34 (74)
6 d1jt6a1 a.4.1.9 (A:2-72) Multi 75.6 2.5 0.00018 22.2 4.2 29 24-52 3-31 (71)
7 d1ui5a1 a.4.1.9 (A:5-75) A-fac 74.9 2.9 0.00021 22.0 4.4 29 24-52 7-35 (71)
8 d1jeqa1 a.140.2.1 (A:559-609) 74.4 3.9 0.00028 21.1 4.7 44 32-77 7-50 (51)
9 d2do1a1 a.140.2.1 (A:5-46) Nuc 74.4 1.2 8.7E-05 22.4 2.4 24 57-80 18-41 (42)
10 d2fx0a1 a.4.1.9 (A:4-76) Hemol 74.1 3 0.00022 22.1 4.4 29 24-52 6-34 (73)
11 d2np5a1 a.4.1.9 (A:9-77) Trans 73.8 2.1 0.00015 22.2 3.6 29 24-52 3-31 (69)
12 d1sgma1 a.4.1.9 (A:5-77) Putat 73.7 3.2 0.00023 21.7 4.4 29 24-52 4-32 (73)
13 d1pb6a1 a.4.1.9 (A:14-85) Hypo 73.1 3.1 0.00022 21.9 4.2 29 24-52 6-34 (72)
14 d1zk8a1 a.4.1.9 (A:6-77) Trans 71.4 2.5 0.00018 22.2 3.6 29 24-52 5-33 (72)
15 d2oi8a1 a.4.1.9 (A:8-86) Putat 71.1 3.6 0.00026 21.8 4.2 30 23-52 10-39 (79)
16 d1q1va_ a.159.4.1 (A:) DEK C-t 70.5 6.2 0.00045 21.5 5.3 53 23-77 13-67 (70)
17 d3c07a1 a.4.1.9 (A:15-89) Puta 70.1 4.2 0.00031 21.2 4.4 29 24-52 7-35 (75)
18 d2fd5a1 a.4.1.9 (A:1-76) Proba 69.9 4 0.00029 21.4 4.2 28 25-52 10-37 (76)
19 d1rkta1 a.4.1.9 (A:2-82) Hypot 69.7 4.2 0.00031 21.6 4.4 29 24-52 13-41 (81)
20 d2fbqa1 a.4.1.9 (A:2-80) Trans 69.6 4.3 0.00031 21.5 4.4 29 24-52 6-34 (79)
21 d1v7ba1 a.4.1.9 (A:1-74) Trans 69.4 4.2 0.00031 21.3 4.3 29 24-52 6-34 (74)
22 d2fq4a1 a.4.1.9 (A:9-77) Trans 69.1 4.7 0.00034 21.0 4.4 29 24-52 6-34 (69)
23 d2hyja1 a.4.1.9 (A:8-82) Putat 67.7 3.3 0.00024 21.9 3.6 29 24-52 7-35 (75)
24 d2id3a1 a.4.1.9 (A:13-80) Puta 67.0 3.6 0.00026 21.3 3.6 28 25-52 9-36 (68)
25 d1tlqa_ a.195.1.1 (A:) Hypothe 66.4 6.1 0.00044 25.0 5.1 50 24-76 3-52 (161)
26 d1t56a1 a.4.1.9 (A:22-94) Ethr 66.0 3.7 0.00027 21.4 3.5 28 25-52 6-33 (73)
27 d1ly1a_ c.37.1.1 (A:) Polynucl 64.2 6.2 0.00045 22.2 4.5 35 43-77 114-148 (152)
28 d1vi0a1 a.4.1.9 (A:6-77) Hypot 63.6 4.6 0.00033 20.9 3.6 28 25-52 4-31 (72)
29 d2iu5a1 a.4.1.9 (A:1-71) Trans 63.6 4.3 0.00032 21.2 3.5 28 25-52 9-36 (71)
30 d2d6ya1 a.4.1.9 (A:7-74) Putat 63.2 6.8 0.00049 20.3 4.3 29 24-52 4-32 (68)
31 d2gfna1 a.4.1.9 (A:4-80) Proba 61.7 5.1 0.00037 21.1 3.6 29 24-52 8-36 (77)
32 d2id6a1 a.4.1.9 (A:1-75) Trans 60.7 2 0.00015 22.8 1.7 29 24-52 5-33 (75)
33 d2csga1 b.82.2.12 (A:3-419) Hy 60.5 16 0.0012 26.0 7.1 73 7-79 16-111 (417)
34 d2i10a1 a.4.1.9 (A:10-78) Puta 59.6 6 0.00044 20.5 3.6 28 25-52 3-30 (69)
35 d1zrja1 a.140.2.1 (A:1-37) Het 58.7 3.7 0.00027 19.9 2.3 33 42-76 5-37 (37)
36 d2o7ta1 a.4.1.9 (A:1-78) Trans 55.5 7.1 0.00052 20.6 3.5 29 24-52 9-37 (78)
37 d1z0xa1 a.4.1.9 (A:4-71) Trans 54.9 7.5 0.00054 20.1 3.5 29 24-52 4-33 (68)
38 d1iqpa1 a.80.1.1 (A:233-327) R 54.5 14 0.001 20.2 9.3 63 8-75 5-68 (95)
39 d1mzba_ a.4.5.42 (A:) Ferric u 53.1 9.2 0.00067 22.1 4.0 54 16-69 5-59 (134)
40 d2g3ba1 a.4.1.9 (A:2-73) Putat 52.9 3.2 0.00024 21.8 1.7 28 25-52 5-32 (72)
41 d2ff4a1 a.4.6.1 (A:10-104) Pro 51.3 11 0.00081 20.4 4.0 40 40-79 38-77 (95)
42 d2iw1a1 c.87.1.8 (A:2-371) Lip 50.2 16 0.0012 22.4 5.1 48 3-52 319-366 (370)
43 d2vkva1 a.4.1.9 (A:6-67) Tetra 49.5 2.7 0.00019 21.6 0.9 28 25-52 2-29 (62)
44 d1qjca_ c.26.1.3 (A:) Phosphop 49.2 13 0.00094 20.7 4.2 16 57-72 141-156 (157)
45 d2g7ga1 a.4.1.9 (A:9-73) Putat 47.5 15 0.0011 18.8 3.9 27 24-52 3-29 (65)
46 d1sxjd1 a.80.1.1 (D:263-353) R 42.5 22 0.0016 19.0 6.9 59 10-74 6-66 (91)
47 d1j6wa_ d.185.1.2 (A:) Autoind 41.1 3.8 0.00028 26.0 0.8 28 19-47 124-156 (161)
48 d2ebfx3 d.3.1.17 (X:1094-1285) 40.4 12 0.00084 23.5 3.1 24 53-76 33-56 (192)
49 d1y9ia_ a.195.1.1 (A:) Low tem 39.6 29 0.0021 21.6 5.0 46 26-74 4-49 (159)
50 d1sxje1 a.80.1.1 (E:256-354) R 38.9 31 0.0023 19.7 6.8 51 22-72 3-70 (99)
51 d1bw0a_ c.67.1.1 (A:) Tyrosine 38.5 11 0.00077 25.1 2.8 21 60-80 391-411 (412)
52 d1mmsa1 a.4.7.1 (A:71-140) Rib 37.9 23 0.0017 19.0 3.8 33 25-59 33-65 (70)
53 d1lkja_ a.39.1.5 (A:) Calmodul 37.8 30 0.0022 19.2 5.7 65 6-72 64-128 (146)
54 d1vlha_ c.26.1.3 (A:) Phosphop 37.5 13 0.00097 20.8 2.9 16 57-72 141-156 (157)
55 d2pq3a1 a.39.1.5 (A:3-75) Calm 37.0 23 0.0017 18.0 3.7 39 16-55 32-73 (73)
56 d1hc8a_ a.4.7.1 (A:) Ribosomal 35.8 21 0.0015 19.4 3.4 33 25-59 37-69 (74)
57 d1yt3a3 c.55.3.5 (A:1-193) Rib 33.4 31 0.0022 20.9 4.3 29 9-37 161-189 (193)
58 d2bisa1 c.87.1.8 (A:1-437) Gly 33.2 8 0.00058 25.0 1.4 57 2-58 375-434 (437)
59 d1rfza_ a.195.1.1 (A:) YutG ho 33.0 18 0.0013 22.7 3.1 49 25-76 10-58 (164)
60 d1xbpg1 a.4.7.1 (G:72-143) Rib 32.6 31 0.0023 18.4 3.8 33 25-59 31-63 (72)
61 d1ujka_ a.118.9.2 (A:) ADP-rib 32.1 32 0.0023 20.3 4.2 31 46-76 91-122 (145)
62 d1h1js_ a.140.2.1 (S:) S/mar D 31.0 19 0.0014 17.7 2.5 35 43-79 8-42 (44)
63 d1vqoi1 a.4.7.1 (I:71-140) Rib 30.4 31 0.0023 18.3 3.5 33 25-59 33-65 (70)
64 d1iuya_ a.4.5.34 (A:) Cullin-3 29.8 42 0.0031 18.4 4.3 36 27-64 27-62 (92)
65 d1dlya_ a.1.1.1 (A:) Protozoan 29.7 18 0.0013 20.0 2.5 36 39-74 74-110 (121)
66 d2dw4a1 a.4.1.18 (A:172-273) L 29.6 45 0.0033 18.7 5.1 52 22-79 33-88 (102)
67 d1t5oa_ c.124.1.5 (A:) Putativ 28.6 70 0.0051 21.4 5.9 56 22-78 71-127 (340)
68 d2acva1 c.87.1.10 (A:3-463) Tr 28.3 11 0.00084 24.2 1.6 47 7-53 410-460 (461)
69 d1h3ob_ a.22.1.3 (B:) TAF(II)- 27.9 33 0.0024 18.6 3.3 33 44-78 8-40 (74)
70 d2oc6a1 d.198.4.1 (A:1-123) Un 27.9 21 0.0015 20.4 2.6 22 58-79 9-30 (123)
71 d1t33a1 a.4.1.9 (A:1-88) Putat 27.9 32 0.0024 18.1 3.3 31 45-76 55-85 (88)
72 d1icha_ a.77.1.2 (A:) Tumor ne 27.8 38 0.0027 17.9 3.6 41 26-66 44-84 (87)
73 d1ykga1 c.23.5.2 (A:63-208) Su 27.5 20 0.0014 21.2 2.5 22 3-24 8-29 (146)
74 d1tfua_ c.26.1.3 (A:) Phosphop 27.4 32 0.0023 19.0 3.4 16 57-72 141-156 (157)
75 d1dlwa_ a.1.1.1 (A:) Protozoan 27.3 40 0.0029 18.4 3.8 31 5-35 76-106 (116)
76 d2bfda1 c.36.1.11 (A:6-400) Br 26.9 39 0.0028 23.3 4.3 62 12-78 312-383 (395)
77 d2hkua1 a.4.1.9 (A:18-87) Puta 26.8 39 0.0028 17.1 4.3 27 25-52 4-30 (70)
78 d1w85a_ c.36.1.11 (A:) Pyruvat 26.6 69 0.005 21.7 5.6 52 13-68 295-356 (365)
79 d2bj7a1 a.43.1.3 (A:1-50) Nick 26.4 25 0.0018 17.8 2.5 19 6-24 30-48 (50)
80 d2hyec2 a.118.17.1 (C:55-401) 26.2 38 0.0028 22.0 4.0 55 20-76 6-60 (347)
81 d1bvyf_ c.23.5.1 (F:) FMN-bind 25.8 20 0.0015 21.1 2.3 26 3-28 11-36 (152)
82 d1ldja1 a.4.5.34 (A:687-776) A 25.6 51 0.0037 18.1 4.4 35 27-63 25-59 (90)
83 d1o6ba_ c.26.1.3 (A:) Phosphop 25.2 24 0.0017 19.8 2.5 17 57-73 142-158 (163)
84 d2dt5a1 a.4.5.38 (A:4-77) Tran 24.5 46 0.0034 17.9 3.5 33 31-68 14-46 (74)
85 d2hzaa1 a.43.1.3 (A:1-48) Nick 24.4 12 0.0009 18.9 0.9 20 6-25 28-47 (48)
86 d2np3a1 a.4.1.9 (A:35-99) Puta 23.9 9.7 0.00071 19.5 0.4 23 30-52 4-26 (65)
87 d1kl9a1 a.60.14.1 (A:89-182) E 23.8 25 0.0018 20.1 2.3 15 59-73 78-92 (94)
88 d1itwa_ c.77.1.2 (A:) Monomeri 23.6 84 0.0061 23.9 5.9 51 23-78 273-324 (740)
89 d1juqa_ a.118.9.2 (A:) ADP-rib 23.6 40 0.0029 20.0 3.5 30 47-76 86-116 (151)
90 d2pmra1 a.8.11.1 (A:3-77) Unch 23.4 55 0.004 17.8 3.7 20 59-78 22-41 (75)
91 d1q1aa_ c.31.1.5 (A:) Hst2 {Ba 21.1 35 0.0025 22.2 3.0 20 12-31 268-287 (289)
92 d1d1da1 a.28.3.1 (A:151-230) R 20.7 28 0.002 19.1 2.1 30 27-56 47-76 (80)
93 d1hw1a2 a.78.1.1 (A:79-230) Fa 20.6 14 0.001 21.2 0.7 20 3-22 123-142 (152)
94 d1vola2 a.74.1.2 (A:208-316) T 20.5 22 0.0016 19.8 1.6 28 36-63 69-96 (109)
No 1
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.97 E-value=0.62 Score=26.80 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHH---HhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 6 EKERLKELLRERL---IECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 6 e~erL~~~L~~rL---~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
+|..+..-+..+| ...+ -++=+..++++=+. .+ .-++|++.+.=.++++ |.++|..+..+||.|=
T Consensus 6 ~y~~l~a~i~~kl~~i~~~~-geerk~~l~~ie~~--le--EA~ell~qMelEvr~~-p~s~R~~~~~klr~Yk 73 (89)
T d1vcsa1 6 DFAVLTAEITSKIARVPRLP-PDEKKQMVANVEKQ--LE--EARELLEQMDLEVREI-PPQSRGMYSNRMRSYK 73 (89)
T ss_dssp HHHHHHHHHHHHHHHGGGSC-TTTHHHHHHHHHHH--HH--HHHHHHHHHHHHHTTS-CTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHh--HH--HHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHH
Confidence 4445555555554 2211 13344555543332 23 6788999998899876 8899999999999983
No 2
>d2g7la1 a.4.1.9 (A:16-83) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=79.29 E-value=1.7 Score=22.92 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.+.|.+.+|+.+|.++.
T Consensus 6 r~~Il~aa~~l~~~~g~~~~si~~ia~~~ 34 (68)
T d2g7la1 6 RRWIVDTAVALMRAEGLEKVTMRRLAQEL 34 (68)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 46788889999999999999999998876
No 3
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=76.57 E-value=2.5 Score=21.99 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 2 R~~il~aa~~l~~~~G~~~~si~~Ia~~a 30 (70)
T d2gena1 2 KDEILQAALACFSEHGVDATTIEMIRDRS 30 (70)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 46777889999999999999999998876
No 4
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=76.11 E-value=4.5 Score=22.40 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=36.3
Q ss_pred HHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhc--cCCHHHHHHHHHHHHH
Q 042650 18 LIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRA--SVPDPVKAELLQRIRS 74 (81)
Q Consensus 18 L~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~--~VP~~vk~Ell~~Ir~ 74 (81)
|..|.|.+- ++...+.+.+.| .+..|++..+-....+ .+|+.+|-+++..|-.
T Consensus 10 l~~~~f~~a-~~~l~~~l~~~G---ys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~ 64 (92)
T d1sxjb1 10 LLASNLEDS-IQILRTDLWKKG---YSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGL 64 (92)
T ss_dssp HSCSSHHHH-HHHHHHTTTTTT---CCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHhCCHHHH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 556777763 333333343344 5888888888877765 5899999999988754
No 5
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=75.95 E-value=1.7 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+++|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 34 (74)
T d2g7sa1 6 ADDILQCARTLIIRGGYNSFSYADISQVV 34 (74)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 46677788889999999999999998876
No 6
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=75.63 E-value=2.5 Score=22.16 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 3 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 31 (71)
T d1jt6a1 3 KDKILGVAKELFIKNGYNATTTGEIVKLS 31 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 46677788888999999999999998875
No 7
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=74.90 E-value=2.9 Score=21.98 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+++|+.+|.+..
T Consensus 7 r~~il~aa~~l~~~~G~~~~si~~Ia~~a 35 (71)
T d1ui5a1 7 RATIIGAAADLFDRRGYESTTLSEIVAHA 35 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 45677788889999999999999998875
No 8
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.41 E-value=3.9 Score=21.10 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=31.9
Q ss_pred HHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 32 RAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 32 re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
++.+...+....++.+|=+...-..... .-.|.+|+.||.++++
T Consensus 7 ~~~~~~~~L~kltV~~LK~~lk~~gL~~--sGkKa~Li~Ri~~~l~ 50 (51)
T d1jeqa1 7 KTHISKGTLGKFTVPMLKEACRAYGLKS--GLKKQELLEALTKHFQ 50 (51)
T ss_dssp HHHHHHTCGGGCCHHHHHHHHHHTTCCC--CSSHHHHHHHHHHHHT
T ss_pred HHHhccCcHhhCcHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhh
Confidence 4445555677888888888775544333 3589999999999986
No 9
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.39 E-value=1.2 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=18.1
Q ss_pred hccCCHHHHHHHHHHHHHHhhhhc
Q 042650 57 RASVPDPVKAELLQRIRSFLASTA 80 (81)
Q Consensus 57 r~~VP~~vk~Ell~~Ir~fL~~~~ 80 (81)
|.+=-.--|.+++.++++||+.|+
T Consensus 18 rgl~~kgnk~dli~rlqayleeh~ 41 (42)
T d2do1a1 18 RGLETKGIKQDLIHRLQAYLEEHA 41 (42)
T ss_dssp HTCCCCSCHHHHHHHHHHHHHHTC
T ss_pred ccccccCcHHHHHHHHHHHHHHhc
Confidence 333334458899999999999986
No 10
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR {Bacillus cereus [TaxId: 1396]}
Probab=74.10 E-value=3 Score=22.14 Aligned_cols=29 Identities=3% Similarity=0.205 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.|.+.+.++|.+.+|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~si~~Ia~~a 34 (73)
T d2fx0a1 6 MENILKAAKKKFGERGYEGTSIQEIAKEA 34 (73)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHH
Confidence 45677788888999999999999998875
No 11
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=73.80 E-value=2.1 Score=22.23 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+|++-..+.+.+.++|.+++|+.+|.+..
T Consensus 3 ~e~i~~aa~~l~~~~G~~~~ti~~Ia~~a 31 (69)
T d2np5a1 3 PERLAAALFDVAAESGLEGASVREVAKRA 31 (69)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 46777788888899999999999988765
No 12
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=73.66 E-value=3.2 Score=21.74 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.|.+.+.++|..++|+.+|.++.
T Consensus 4 r~~Il~aa~~l~~~~G~~~~si~~Ia~~a 32 (73)
T d1sgma1 4 REKILHTASRLSQLQGYHATGLNQIVKES 32 (73)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 46777788889999999999999998876
No 13
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=73.13 E-value=3.1 Score=21.91 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 34 (72)
T d1pb6a1 6 KKAILSAALDTFSQFGFHGTRLEQIAELA 34 (72)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45677778889999999999999998865
No 14
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=71.42 E-value=2.5 Score=22.17 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 5 ~e~Il~aa~~l~~~~G~~~~t~~~Ia~~a 33 (72)
T d1zk8a1 5 LQKIVETAAEIADANGVQEVTLASLAQTL 33 (72)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHh
Confidence 46777888889999999999999998876
No 15
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=71.08 E-value=3.6 Score=21.85 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 23 WRDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 23 W~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
.++++-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 10 ~r~~il~aa~~l~~~~G~~~~t~~~Ia~~a 39 (79)
T d2oi8a1 10 VRAEIKDHAWEQIATAGASALSLNAIAKRM 39 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 356677778888888999999999988775
No 16
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.48 E-value=6.2 Score=21.48 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhh--hccCCHHHHHHHHHHHHHHhh
Q 042650 23 WRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKG--RASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 23 W~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~A--r~~VP~~vk~Ell~~Ir~fL~ 77 (81)
+.++++...+++++..+.+++|.-++-..+.-+= .++ .+=|..|=..|.+||.
T Consensus 13 td~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL--~~rK~~I~~~I~~~Ls 67 (70)
T d1q1va_ 13 TDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDL--TERKDFIKTTVKELIS 67 (70)
T ss_dssp CHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCC--SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999885432 222 2556666677888875
No 17
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Probab=70.13 E-value=4.2 Score=21.16 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 7 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 35 (75)
T d3c07a1 7 RALILETAMRLFQERGYDRTTMRAIAQEA 35 (75)
T ss_dssp HHHHHHHHHHHHHHTCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 45566778888899999999999998765
No 18
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=69.88 E-value=4 Score=21.44 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++|-+.+.+.+.++|.+++|+.+|.++.
T Consensus 10 ~~Il~aa~~l~~~~G~~~~si~~Ia~~a 37 (76)
T d2fd5a1 10 ARILGAATQALLERGAVEPSVGEVMGAA 37 (76)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHh
Confidence 5566677888888899999999998775
No 19
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=69.66 E-value=4.2 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-..+.+.+.+.|.+.+|+.+|.+..
T Consensus 13 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 41 (81)
T d1rkta1 13 QAEILEAAKTVFKRKGFELTTMKDVVEES 41 (81)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 46677788889999999999999998876
No 20
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=69.62 E-value=4.3 Score=21.45 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+...+.++|.+.+|+.+|....
T Consensus 6 re~Il~aa~~~~~~~G~~~~ti~~Ia~~a 34 (79)
T d2fbqa1 6 VERILDAAEQLFAEKGFAETSLRLITSKA 34 (79)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHH
Confidence 35566677778888888888888887764
No 21
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=69.45 E-value=4.2 Score=21.26 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|...+|+.+|.+..
T Consensus 6 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 34 (74)
T d1v7ba1 6 KEMILRTAIDYIGEYSLETLSYDSLAEAT 34 (74)
T ss_dssp HHHHHHHHHHHHHHSCSTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 46677788899999999999999998875
No 22
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus cereus [TaxId: 1396]}
Probab=69.15 E-value=4.7 Score=21.02 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+.+|+.++.++.
T Consensus 6 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 34 (69)
T d2fq4a1 6 QKAILSASYELLLESGFKAVTVDKIAERA 34 (69)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 34566677778888888888888888765
No 23
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=67.70 E-value=3.3 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++|-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 7 r~~il~aa~~l~~~~G~~~~t~~~Ia~~a 35 (75)
T d2hyja1 7 RGRILGRAAEIASEEGLDGITIGRLAEEL 35 (75)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCcHHHHHHHH
Confidence 45677778888889999999999998765
No 24
>d2id3a1 a.4.1.9 (A:13-80) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=67.00 E-value=3.6 Score=21.35 Aligned_cols=28 Identities=4% Similarity=0.080 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.+.|.+++|+.+|.+..
T Consensus 9 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 36 (68)
T d2id3a1 9 EAVLLAAGDALAADGFDALDLGEIARRA 36 (68)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHH
Confidence 5566667777888888888888887765
No 25
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=66.39 E-value=6.1 Score=25.01 Aligned_cols=50 Identities=16% Similarity=0.349 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
.+++.+.+++.+.++| ||++++.+-+.--=..-+|.-...+.+..+...|
T Consensus 3 ~~~~~~~~~~~L~erG---Vt~~dIa~lv~~lq~~y~p~lt~eec~~~v~~vL 52 (161)
T d1tlqa_ 3 MNEMVDITKDMLNKRG---VMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVL 52 (161)
T ss_dssp HHHHHHHHHHHHHHTT---CCHHHHHHHHHHHTTTTCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC---CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 4678888999999886 4788887766544344466655566666665555
No 26
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=66.05 E-value=3.7 Score=21.37 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
..|-+.+.+.+.+.|.+++|+.+|..+.
T Consensus 6 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 33 (73)
T d1t56a1 6 LAILATAENLLEDRPLADISVDDLAKGA 33 (73)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 3455667778888888888888887765
No 27
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=64.17 E-value=6.2 Score=22.20 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=31.5
Q ss_pred CCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhh
Q 042650 43 VTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLA 77 (81)
Q Consensus 43 v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~ 77 (81)
++.+.+++.+.-..+..+|+++-+.+..+.++|+.
T Consensus 114 ~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~ 148 (152)
T d1ly1a_ 114 VPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLG 148 (152)
T ss_dssp CCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHccCCCCCCHHHHHHHHHHHHhhcC
Confidence 48899999999888899999999999999999874
No 28
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=63.59 E-value=4.6 Score=20.95 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+++-+.+.+.+.++|...+|+.+|.+..
T Consensus 4 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 31 (72)
T d1vi0a1 4 MQIIDAAVEVIAENGYHQSQVSKIAKQA 31 (72)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHH
Confidence 4566677788888888888888888765
No 29
>d2iu5a1 a.4.1.9 (A:1-71) Transcriptional activator DhaS {Lactococcus lactis [TaxId: 1358]}
Probab=63.56 E-value=4.3 Score=21.19 Aligned_cols=28 Identities=7% Similarity=0.249 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.+-+.+.+.+.++|...+|+.++.+..
T Consensus 9 ~~I~~aa~~l~~~~G~~~~sv~~Ia~~a 36 (71)
T d2iu5a1 9 KIIAKAFKDLMQSNAYHQISVSDIMQTA 36 (71)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHh
Confidence 4556677777888888888888887765
No 30
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=63.21 E-value=6.8 Score=20.27 Aligned_cols=29 Identities=10% Similarity=0.126 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+.+|.+..
T Consensus 4 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 32 (68)
T d2d6ya1 4 KARIFEAAVAEFARHGIAGARIDRIAAEA 32 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 45677778888889999999999988764
No 31
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=61.67 E-value=5.1 Score=21.08 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.++-+.+.+.+.++|...+|+.+|.++.
T Consensus 8 r~~Il~aa~~l~~~~G~~~~s~~~Ia~~a 36 (77)
T d2gfna1 8 RRALADAVLALIAREGISAVTTRAVAEES 36 (77)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHH
Confidence 34455666677777777777777777655
No 32
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=60.66 E-value=2 Score=22.80 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.|-+.+.+.+.++|.+++|+.+|.++.
T Consensus 5 R~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 33 (75)
T d2id6a1 5 RDAILKAAVEVFGKKGYDRATTDEIAEKA 33 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45566667777777777777777777665
No 33
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]}
Probab=60.53 E-value=16 Score=25.96 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHh--cChHHH---HHHHHHHH--HHhhC---CCCCCHHHHHHh-hchhh------------hccCCHH
Q 042650 7 KERLKELLRERLIE--CGWRDE---MKSLCRAY--TRKKG---RNNVTVDDLVHV-ITPKG------------RASVPDP 63 (81)
Q Consensus 7 ~erL~~~L~~rL~e--~GW~D~---vr~~~re~--i~~~g---~~~v~~~~L~~~-i~P~A------------r~~VP~~ 63 (81)
...||..|+.+..+ -.|..= |+..+.+| ++++| +..++|.+|... +.+.. |+.||.+
T Consensus 16 i~~~K~~Lr~~~~~~~~~f~~l~~~i~~ev~eI~~l~~~G~~iIPeI~F~dI~~~~~~~~~~~~IkrrG~vVIRnV~p~e 95 (417)
T d2csga1 16 IRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEVKRRGCAVIKGHFPRE 95 (417)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCBCCHHHHHTTCCCHHHHHHHHHHSEEEETTSSCHH
T ss_pred HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeHHHhhcCCCCHHHHHHHHhcCEEEECCCCCHH
Confidence 45677778776632 455544 44444443 23446 577899998753 33222 5789999
Q ss_pred HHHHHHHHHHHHhhhh
Q 042650 64 VKAELLQRIRSFLAST 79 (81)
Q Consensus 64 vk~Ell~~Ir~fL~~~ 79 (81)
--.+....|.+||+.+
T Consensus 96 ~a~~w~~~l~~Yle~n 111 (417)
T d2csga1 96 QALAWDQSMLDYLDKN 111 (417)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999875
No 34
>d2i10a1 a.4.1.9 (A:10-78) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=59.63 E-value=6 Score=20.46 Aligned_cols=28 Identities=11% Similarity=0.207 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.+=+.|.+.+.++|..++|+.++.+..
T Consensus 3 e~iL~aA~~lf~~~G~~~~ti~~Ia~~a 30 (69)
T d2i10a1 3 QVALQTAMELFWRQGYEGTSITDLTKAL 30 (69)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcccCCHHHHHHHh
Confidence 4455677888889999999999998876
No 35
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.70 E-value=3.7 Score=19.94 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=19.4
Q ss_pred CCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 42 NVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 42 ~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
+.++.+|=++. ++|.+=..-.|.+|+.|+.++|
T Consensus 5 ~m~V~eLK~~L--k~rgL~~sG~Ka~Li~RL~~al 37 (37)
T d1zrja1 5 RLKVNELREEL--QRRGLDTRGLKAELAERLQAAL 37 (37)
T ss_dssp GSCHHHHHHHH--HHTTCCCCSCHHHHHHHHHHHH
T ss_pred HCcHHHHHHHH--HHCCCCCCCCHHHHHHHHHHhC
Confidence 34455555544 3344444566788888887765
No 36
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=55.48 E-value=7.1 Score=20.65 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.++|.+.+|+.+|.++.
T Consensus 9 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~a 37 (78)
T d2o7ta1 9 REHIITTTCNLYRTHHHDSLTMENIAEQA 37 (78)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccccCHHHHHHHh
Confidence 45666778888888998899999988765
No 37
>d1z0xa1 a.4.1.9 (A:4-71) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=54.93 E-value=7.5 Score=20.08 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHh-hCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRK-KGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~-~g~~~v~~~~L~~~i 52 (81)
++.+-+.+.+.+.+ +|.+++|+.+|.++.
T Consensus 4 r~~Ii~aa~~l~~e~~G~~~~t~~~Ia~~a 33 (68)
T d1z0xa1 4 KDTIIAAAFSLLEKSPTLEQLSMRKVAKQL 33 (68)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccCHHHHHHHH
Confidence 45666777787765 688888999888775
No 38
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=54.53 E-value=14 Score=20.19 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhh-ccCCHHHHHHHHHHHHHH
Q 042650 8 ERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGR-ASVPDPVKAELLQRIRSF 75 (81)
Q Consensus 8 erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar-~~VP~~vk~Ell~~Ir~f 75 (81)
+.|.+.|..-+. ..| ++.+....+.+.+.| .+..|++..+..... .-+|+.+|-+++..|-.+
T Consensus 5 ~~I~~il~~~l~-~~f-~~a~~~l~~l~~~~G---~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~ 68 (95)
T d1iqpa1 5 EDIREMMLLALK-GNF-LKAREKLREILLKQG---LSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEY 68 (95)
T ss_dssp HHHHHHHHHHHH-TCH-HHHHHHHHHHHHHHC---CCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCH-HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 456666666665 344 666777777776666 467777777655443 358999999999888654
No 39
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.07 E-value=9.2 Score=22.14 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=37.0
Q ss_pred HHHHhcChH-HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHH
Q 042650 16 ERLIECGWR-DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELL 69 (81)
Q Consensus 16 ~rL~e~GW~-D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell 69 (81)
..|.+.|.+ ..=|...-+++.+.+...+|.++|++.+..+.-.+=+..|++-|-
T Consensus 5 ~~Lr~~GlR~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~ 59 (134)
T d1mzba_ 5 SELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLT 59 (134)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 458889998 677777777776543347999999999976554443445665543
No 40
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=52.89 E-value=3.2 Score=21.76 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++|-+.+.+.+.++|.+++|+.+|.++.
T Consensus 5 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~a 32 (72)
T d2g3ba1 5 DAILKASATAIAQRGIRGLRVNDVAEVA 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 4555566666677777777777766654
No 41
>d2ff4a1 a.4.6.1 (A:10-104) Probable regulatory protein EmbR {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=51.35 E-value=11 Score=20.36 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 40 RNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 40 ~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
...+|-++|++.+-|..-...+...-.-.+.++|..|++.
T Consensus 38 g~~vs~~~l~~~lW~~~~~~~~~~~L~~~v~~LRk~L~~~ 77 (95)
T d2ff4a1 38 NRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGA 77 (95)
T ss_dssp TSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGG
T ss_pred CeeEeHHHHHHHhcCCCccCCCcEEEEEEHHHHHHHHhhc
Confidence 3678999999999998766666666678899999999764
No 42
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=50.24 E-value=16 Score=22.43 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 3 ESGEKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 3 esGe~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
..++.+.|.+.|..-|.+..-+.++.+.||+.+++.+ .-+..+-+.+|
T Consensus 319 ~~~d~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~~--~~~~~~~~~~i 366 (370)
T d2iw1a1 319 EPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQD--LYSLPEKAADI 366 (370)
T ss_dssp SSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSC--CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhC--hhHHHHHHHHH
Confidence 4578899999999988888889999999999887664 34666665554
No 43
>d2vkva1 a.4.1.9 (A:6-67) Tetracyclin repressor (Tet-repressor, TetR) {Escherichia coli [TaxId: 562]}
Probab=49.49 E-value=2.7 Score=21.63 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++|-+.+.+.+.+.|.+.+|+.+|.++.
T Consensus 2 ~~Il~aA~~l~~~~G~~~~s~~~Ia~~a 29 (62)
T d2vkva1 2 SKVINSALELGNEVGIEGLTTRKLAQKL 29 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHh
Confidence 4455566666666666667777766654
No 44
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=49.18 E-value=13 Score=20.69 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=12.9
Q ss_pred hccCCHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRI 72 (81)
Q Consensus 57 r~~VP~~vk~Ell~~I 72 (81)
..+||++|.+-|.+++
T Consensus 141 ~~lvP~~V~~yI~~k~ 156 (157)
T d1qjca_ 141 THFLPENVHQALMAKL 156 (157)
T ss_dssp GGGSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhh
Confidence 4679999999887764
No 45
>d2g7ga1 a.4.1.9 (A:9-73) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=47.49 E-value=15 Score=18.76 Aligned_cols=27 Identities=15% Similarity=0.370 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 24 RDEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 24 ~D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
++++-+.+.+.+.++| .+|+.+|.+..
T Consensus 3 R~~Il~aa~~l~~~~G--~~ti~~Ia~~a 29 (65)
T d2g7ga1 3 RERIAEAALELVDRDG--DFRMPDLARHL 29 (65)
T ss_dssp HHHHHHHHHHHHHHHS--SCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcC--CCCHHHHHHHh
Confidence 4667778888888887 67888887764
No 46
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.50 E-value=22 Score=19.02 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhh--hccCCHHHHHHHHHHHHH
Q 042650 10 LKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKG--RASVPDPVKAELLQRIRS 74 (81)
Q Consensus 10 L~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~A--r~~VP~~vk~Ell~~Ir~ 74 (81)
+++++..-+ .|=.++.++.+++.+.+ |. +..+++..+.... ...+|+.+|-+++..|-.
T Consensus 6 i~~il~~~~--~~~f~~a~~~i~~l~~~-Gy---s~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~ 66 (91)
T d1sxjd1 6 LIEIVEKVK--SGDFDEIKKYVNTFMKS-GW---SAASVVNQLHEYYITNDNFDTNFKNQISWLLFT 66 (91)
T ss_dssp HHHHHHHHH--SCCHHHHHHHHHHHHHT-SC---CCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCHHHHHHHHHHHHHc-CC---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 444554443 25577788888887764 53 5556776666542 456899999999988754
No 47
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=41.10 E-value=3.8 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.371 Sum_probs=19.6
Q ss_pred HhcChH-----HHHHHHHHHHHHhhCCCCCCHHH
Q 042650 19 IECGWR-----DEMKSLCRAYTRKKGRNNVTVDD 47 (81)
Q Consensus 19 ~e~GW~-----D~vr~~~re~i~~~g~~~v~~~~ 47 (81)
.+|||+ +..+..|+.++.+ |+.+.+.++
T Consensus 124 ~~CGny~~hsL~~Ak~~A~~~L~~-~l~~~~~~~ 156 (161)
T d1j6wa_ 124 YQCGSYTEHSLEDAHEIAKNVIAR-GIGVNKNED 156 (161)
T ss_dssp TTCTTTTSCCHHHHHHHHHHHHHH-CCEEECGGG
T ss_pred hhCCChhhCCHHHHHHHHHHHHHh-hcccCcchh
Confidence 479997 5688889988874 555444443
No 48
>d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}
Probab=40.41 E-value=12 Score=23.45 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.7
Q ss_pred chhhhccCCHHHHHHHHHHHHHHh
Q 042650 53 TPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 53 ~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
.|--.++|+++.+.|++++|-+.-
T Consensus 33 lpllensvsedlreelmqkidaik 56 (192)
T d2ebfx3 33 LPLLENSVSEDLREELMQKIDAIK 56 (192)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHHHHh
Confidence 477789999999999999998763
No 49
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=39.63 E-value=29 Score=21.59 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRS 74 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~ 74 (81)
.+.+.+++.+.++| ||++++.+-+.--=..-+|.-...+.+..+..
T Consensus 4 ~l~~~a~~~L~erG---Vt~~dIa~lv~~lq~~y~p~lt~ee~~~~v~~ 49 (159)
T d1y9ia_ 4 ALESKARSWLIERG---VEIDDIAELVLFLQQKYHPGLELDICRQNVEH 49 (159)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 35566666666665 35666666444333333444333444444333
No 50
>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.91 E-value=31 Score=19.66 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHhhC---------------CCCCCHHHHHHhhchhhh--ccCCHHHHHHHHHHH
Q 042650 22 GWRDEMKSLCRAYTRKKG---------------RNNVTVDDLVHVITPKGR--ASVPDPVKAELLQRI 72 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g---------------~~~v~~~~L~~~i~P~Ar--~~VP~~vk~Ell~~I 72 (81)
.|..-+.++|+.++.++. +..+..+-++..+.-.=. ..++++.|.++..--
T Consensus 3 dWe~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~a 70 (99)
T d1sxje1 3 DWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYS 70 (99)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 389999999999887653 344455555555543332 346677777776543
No 51
>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}
Probab=38.45 E-value=11 Score=25.09 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHhhhhc
Q 042650 60 VPDPVKAELLQRIRSFLASTA 80 (81)
Q Consensus 60 VP~~vk~Ell~~Ir~fL~~~~ 80 (81)
.|++.-+|-+.||++||+.++
T Consensus 391 ~~~e~l~eal~Rl~~~l~~~~ 411 (412)
T d1bw0a_ 391 RPVEVYREAVERIKAFCQRHA 411 (412)
T ss_dssp SCHHHHHHHHHHHHHHHHHHB
T ss_pred CCHHHHHHHHHHHHHHHHhcC
Confidence 588888999999999999987
No 52
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=37.93 E-value=23 Score=19.04 Aligned_cols=33 Identities=6% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
++|++.|+... .+.+..+++.....|.-.||.|
T Consensus 33 ~qv~eIAk~K~--~dl~~~~l~~a~k~v~GtArSM 65 (70)
T d1mmsa1 33 KQIEEIAKTKM--PDLNANSLEAAMKIIEGTAKSM 65 (70)
T ss_dssp HHHHHHHHHHG--GGCCCSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh--cccCCCCHHHHHHHHHHhHhhC
Confidence 56677776543 4567789999999999888876
No 53
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=37.81 E-value=30 Score=19.21 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHH
Q 042650 6 EKERLKELLRERLIECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRI 72 (81)
Q Consensus 6 e~erL~~~L~~rL~e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~I 72 (81)
+++.....+.......++.++++...+ .+...+...++.+++...+...+. .+|++.-++++..+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~aF~-~~D~d~~G~I~~~el~~~l~~~g~-~~~~~~~~~~~~~~ 128 (146)
T d1lkja_ 64 EFSEFLALMSRQLKSNDSEQELLEAFK-VFDKNGDGLISAAELKHVLTSIGE-KLTDAEVDDMLREV 128 (146)
T ss_dssp EHHHHHHHHHHHTCCCCHHHHHHHHHH-HHCSSSSCEEEHHHHHHHHHHHTC-SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHH-HhCCCCCCcCcHHHHHHHHHHcCC-cccHHHHHHHHHhc
Confidence 344555556666666677788887776 454456677899999888877665 45555556665543
No 54
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Probab=37.48 E-value=13 Score=20.76 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=12.9
Q ss_pred hccCCHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRI 72 (81)
Q Consensus 57 r~~VP~~vk~Ell~~I 72 (81)
+.+||++|.+-|.+++
T Consensus 141 ~~lvP~~V~~yI~ek~ 156 (157)
T d1vlha_ 141 TEWVPPEVARALNEKL 156 (157)
T ss_dssp TTTSCHHHHHHHHHHT
T ss_pred hHhcCHHHHHHHHHHh
Confidence 5789999988777664
No 55
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]}
Probab=36.98 E-value=23 Score=17.98 Aligned_cols=39 Identities=10% Similarity=0.289 Sum_probs=20.9
Q ss_pred HHHHhcCh---HHHHHHHHHHHHHhhCCCCCCHHHHHHhhchh
Q 042650 16 ERLIECGW---RDEMKSLCRAYTRKKGRNNVTVDDLVHVITPK 55 (81)
Q Consensus 16 ~rL~e~GW---~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~ 55 (81)
.-|...|. .++++.+.+.. ...|...++|++.+.-++|+
T Consensus 32 ~~l~~~g~~~s~~~~~~~~~~~-D~d~~g~I~f~eF~~~m~~k 73 (73)
T d2pq3a1 32 TVMRSLGQNPTEAELQDMINEV-DADGNGTIDFPEFLTMMARK 73 (73)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHH-CTTCSSEEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHh-CCCCCCeEeHHHHHHHHhcC
Confidence 33444444 34444444332 33445677888887766653
No 56
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=35.80 E-value=21 Score=19.44 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
+++++.|+... .+.+..+++.....|.-.||.|
T Consensus 37 ~qi~eIAk~K~--~Dl~~~~l~~a~k~v~GtArSM 69 (74)
T d1hc8a_ 37 DKVREIAELKM--PDLNAASIEAAMRMIEGTARSM 69 (74)
T ss_dssp HHHHHHHHHSG--GGCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hhcCCCCHHHHHHHHHhhHhhc
Confidence 56666665533 4567889999999999888865
No 57
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=33.38 E-value=31 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHh
Q 042650 9 RLKELLRERLIECGWRDEMKSLCRAYTRK 37 (81)
Q Consensus 9 rL~~~L~~rL~e~GW~D~vr~~~re~i~~ 37 (81)
.|-+.|..+|.+.||.+.+..-|+.....
T Consensus 161 ~L~~~L~~~l~~~~~l~~~~~e~~~l~~~ 189 (193)
T d1yt3a3 161 PITAKLMVETEASGWLPAALDECRLMQMR 189 (193)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHh
Confidence 46678888999999999998888765544
No 58
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=33.24 E-value=8 Score=25.01 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=34.6
Q ss_pred ccchhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHhhCCCCC--CHHHHHHhhchhhhc
Q 042650 2 IESGEKERLKELLRERLI-ECGWRDEMKSLCRAYTRKKGRNNV--TVDDLVHVITPKGRA 58 (81)
Q Consensus 2 vesGe~erL~~~L~~rL~-e~GW~D~vr~~~re~i~~~g~~~v--~~~~L~~~i~P~Ar~ 58 (81)
+..++.+.|.+.|.+-|. ....+.++.+.|++..++-..+++ .+.++|+.+.-+|-+
T Consensus 375 ~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~a~~~~~iY~~~i~r~~~ 434 (437)
T d2bisa1 375 VKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYVKAYTGSIDRAFD 434 (437)
T ss_dssp ECTTCHHHHHHHHHHHHTTTTSCTHHHHHHHHHHHHHSCHHHHHHHHHHHHHTCSCCBCT
T ss_pred ECCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHhh
Confidence 456788888888887775 456788888888876542111111 344555555544443
No 59
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=32.97 E-value=18 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
+++.+.+++.+.++| ||++++.+-+.--=..-+|.-...+-...+..-|
T Consensus 10 ~~l~~~~~~~L~erG---Vt~~dIa~~v~~lq~~y~p~lt~e~c~~~v~~vL 58 (164)
T d1rfza_ 10 NNLEQTARRWLEERG---VTVEKIAELVYYLQSKYHPDLTMEECIENVNRVI 58 (164)
T ss_dssp TSCHHHHHHHHHHTT---CCHHHHHHHHHHHHTTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHh
Confidence 345677777888775 4777777766555555566544444444444433
No 60
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=32.56 E-value=31 Score=18.43 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
++|.+.|+.... +.+..+++.....|.-.|+.|
T Consensus 31 ~~i~eIAk~K~~--dl~~~~l~~~~k~V~GTa~Sm 63 (72)
T d1xbpg1 31 DQVLEIAKTKMP--DLNAGSVEAAANTVAGTARSM 63 (72)
T ss_pred HHHHHHHHHHHH--hcCCCCHHHHHHHHHhhheec
Confidence 566666655433 456668888888887777765
No 61
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.13 E-value=32 Score=20.32 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=22.2
Q ss_pred HHHHHhhchhh-hccCCHHHHHHHHHHHHHHh
Q 042650 46 DDLVHVITPKG-RASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 46 ~~L~~~i~P~A-r~~VP~~vk~Ell~~Ir~fL 76 (81)
++|+.-+.|+. ...+|..|++.++.-|+.+=
T Consensus 91 ~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~ 122 (145)
T d1ujka_ 91 NELIKVVSPKYLGSRTSEKVKNKILELLYSWT 122 (145)
T ss_dssp HHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 34555565553 24589999999999998863
No 62
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.03 E-value=19 Score=17.68 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=19.5
Q ss_pred CCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 43 VTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 43 v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
.++.+|=+.. +.|.+=..-.|.+|+.||.++-++.
T Consensus 8 ltv~eLK~~l--k~rgL~~sG~Ka~Li~RL~~~d~~~ 42 (44)
T d1h1js_ 8 LTVVQLKDLL--TKRNLSVGGLKNELVQRLIKDDEES 42 (44)
T ss_dssp CCHHHHHHHH--HHTTCCCCSSHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHH--HHCCCCCCCCHHHHHHHHHHHhhhh
Confidence 3444444443 2223333446888888888886544
No 63
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=30.40 E-value=31 Score=18.34 Aligned_cols=33 Identities=6% Similarity=0.078 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhcc
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRAS 59 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~ 59 (81)
++|.+.|+.. ..+.+..+++..+..|.-.|+.|
T Consensus 33 ~~i~eIAk~K--~~dl~~~~l~~~~k~V~GTa~Sm 65 (70)
T d1vqoi1 33 DQVKQIAEQK--HPDLLSYDLTNAAKEVVGTCTSL 65 (70)
T ss_dssp HHHHHHHHHC--TTTCCCSSHHHHHHHHTTTSTTT
T ss_pred HHHHHHHHHH--HHhcCCCCHHHHHHHHHhhhhcc
Confidence 5566666543 23556678888888888887765
No 64
>d1iuya_ a.4.5.34 (A:) Cullin-3 homologue {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.83 E-value=42 Score=18.44 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHH
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPV 64 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~v 64 (81)
+...+=.+++.++ .+++++|+.++...-....|+++
T Consensus 27 i~AaIVRIMK~~k--~l~~~~L~~~v~~~l~~~F~p~~ 62 (92)
T d1iuya_ 27 IEAAIVRIMKSRK--KMQHNVLVAEVTQQLKARFLPSP 62 (92)
T ss_dssp HHHHHHHHHHHHC--EEEHHHHHHHHHHHTCSSCCCCH
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHhCcCCCCH
Confidence 4455556777774 78999999999998776565533
No 65
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=29.71 E-value=18 Score=19.97 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHhhchhhhcc-CCHHHHHHHHHHHHH
Q 042650 39 GRNNVTVDDLVHVITPKGRAS-VPDPVKAELLQRIRS 74 (81)
Q Consensus 39 g~~~v~~~~L~~~i~P~Ar~~-VP~~vk~Ell~~Ir~ 74 (81)
+++..-|+..+..+.-...+. ||++.+.+++..+..
T Consensus 74 ~i~~~~f~~~~~~l~~al~~~~v~~~~~~e~~~~~~~ 110 (121)
T d1dlya_ 74 HLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVAS 110 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455555667776666665555 899999988887654
No 66
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.56 E-value=45 Score=18.74 Aligned_cols=52 Identities=12% Similarity=0.168 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHH----HHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhhh
Q 042650 22 GWRDEMKSLCRA----YTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 22 GW~D~vr~~~re----~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
|+..++-..+|+ .++..-..-+|+++....+.|.-..-| .+..+|-.||+.+
T Consensus 33 ~~~~~~Yl~iRN~Il~~w~~np~~~Lt~~~~~~~l~~~~~~d~------~li~ri~~FL~~~ 88 (102)
T d2dw4a1 33 QQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDT------VLVHRVHSYLERH 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTBCCCHHHHHHHSCTTGGGCH------HHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeeeeHHHHHhhccccccccH------HHHHHHHHHHHHc
Confidence 444444444444 445544567899999888876543322 5678999999875
No 67
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.55 E-value=70 Score=21.36 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCC-HHHHHHHHHHHHHHhhh
Q 042650 22 GWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVP-DPVKAELLQRIRSFLAS 78 (81)
Q Consensus 22 GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP-~~vk~Ell~~Ir~fL~~ 78 (81)
.|.+.++..+......| ...+|+-.-++.+...+....+ +++|+.++..+..|.+.
T Consensus 71 e~~~~L~~a~~~L~~aR-PTAVnL~nAl~r~~~~~~~~~s~~~~k~~ll~~a~~i~~e 127 (340)
T d1t5oa_ 71 ELKEHLKKAADFLASTR-PTAVNLFVGIERALNAALKGESVEEVKELALREAEKLAEE 127 (340)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-ccchhHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 47788887777666554 5777887777766665544443 68889999998888764
No 68
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=28.28 E-value=11 Score=24.18 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHHH---HHHHHhhCCCCCCHHHHHHhhc
Q 042650 7 KERLKELLRERLIE-CGWRDEMKSLC---RAYTRKKGRNNVTVDDLVHVIT 53 (81)
Q Consensus 7 ~erL~~~L~~rL~e-~GW~D~vr~~~---re~i~~~g~~~v~~~~L~~~i~ 53 (81)
.+.|.+.+++-|.+ +.-+.+++++- |+.+.+.|+..-++.+++++|+
T Consensus 410 ~~~l~~a~~~vl~~d~~~r~~a~~l~~~~r~a~~~gg~s~~~~~~~~~~~~ 460 (461)
T d2acva1 410 AEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDIT 460 (461)
T ss_dssp HHHHHHHHHHHTCTTCTHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 45677777777743 55666655543 3333333433346777777764
No 69
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.90 E-value=33 Score=18.64 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=27.0
Q ss_pred CHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 44 TVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 44 ~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
++++|+.+|-|.+ .+.++|..=+++---+|+++
T Consensus 8 ~L~eLv~~idp~~--~ld~~vee~ll~iADdFV~~ 40 (74)
T d1h3ob_ 8 KLQDLVREVDPNE--QLDEDVEEMLLQIADDFIES 40 (74)
T ss_dssp HHHHHHHHHCSSC--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHH
Confidence 6788999998754 68899988888888888875
No 70
>d2oc6a1 d.198.4.1 (A:1-123) Uncharacterized protein YdhG {Bacillus subtilis [TaxId: 1423]}
Probab=27.86 E-value=21 Score=20.42 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=17.7
Q ss_pred ccCCHHHHHHHHHHHHHHhhhh
Q 042650 58 ASVPDPVKAELLQRIRSFLAST 79 (81)
Q Consensus 58 ~~VP~~vk~Ell~~Ir~fL~~~ 79 (81)
+.+|+..+++.+.+|++.+.+.
T Consensus 9 ~~~~~p~~r~~l~~l~~~I~~~ 30 (123)
T d2oc6a1 9 AGIADPFHRERTEEVLTWIKNK 30 (123)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHH
Confidence 5678888889999999887654
No 71
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=27.86 E-value=32 Score=18.06 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=13.1
Q ss_pred HHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 45 VDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 45 ~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
-++|+..+.....+.+-+.+ .+....+..||
T Consensus 55 K~~L~~a~~~~~~~~~~~~~-~~~~~~~~~~l 85 (88)
T d1t33a1 55 KEDLYLACAQWIADFLGEKF-RPHAEKAERLF 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34555555444444333332 23334444444
No 72
>d1icha_ a.77.1.2 (A:) Tumor necrosis factor receptor-1 death domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.82 E-value=38 Score=17.87 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHH
Q 042650 26 EMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKA 66 (81)
Q Consensus 26 ~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~ 66 (81)
++.++-....+..|....+++.|...+.-..+.-+-+.++.
T Consensus 44 q~~~mL~~W~~~~g~~~at~~~L~~aL~~~~~~~~Ae~i~~ 84 (87)
T d1icha_ 44 AQYSMLATWRRRTPRREATLELLGRVLRDMDLLGCLEDIEE 84 (87)
T ss_dssp HHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333333334455445688999888877766655555544
No 73
>d1ykga1 c.23.5.2 (A:63-208) Sulfite reductase alpha-component CysJ N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.45 E-value=20 Score=21.21 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=18.9
Q ss_pred cchhHHHHHHHHHHHHHhcChH
Q 042650 3 ESGEKERLKELLRERLIECGWR 24 (81)
Q Consensus 3 esGe~erL~~~L~~rL~e~GW~ 24 (81)
+||+.+++.+.|..+|.+.|..
T Consensus 8 ~tGnae~~A~~l~~~l~~~g~~ 29 (146)
T d1ykga1 8 QTGNARRVAEALRDDLLAAKLN 29 (146)
T ss_dssp SSSHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHHHHCCCC
Confidence 6899999999999998887754
No 74
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.39 E-value=32 Score=18.96 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=12.4
Q ss_pred hccCCHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRI 72 (81)
Q Consensus 57 r~~VP~~vk~Ell~~I 72 (81)
+.+||+.|.+-|.+++
T Consensus 141 ~~lvP~~V~~yIkek~ 156 (157)
T d1tfua_ 141 SELLPEPVNRRLRDRL 156 (157)
T ss_dssp GGGSCHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHhc
Confidence 6789999988776653
No 75
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=27.31 E-value=40 Score=18.43 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 042650 5 GEKERLKELLRERLIECGWRDEMKSLCRAYT 35 (81)
Q Consensus 5 Ge~erL~~~L~~rL~e~GW~D~vr~~~re~i 35 (81)
.++++..+.|.+-|.++|.-++....+...+
T Consensus 76 ~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~ 106 (116)
T d1dlwa_ 76 AQFTTVIGHLRSALTGAGVAAALVEQTVAVA 106 (116)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455555555555555555555554444433
No 76
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.88 E-value=39 Score=23.33 Aligned_cols=62 Identities=15% Similarity=0.319 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCh--HHH---HHHHHHHHHHh-----hCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 12 ELLRERLIECGW--RDE---MKSLCRAYTRK-----KGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 12 ~~L~~rL~e~GW--~D~---vr~~~re~i~~-----~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
..++.+|.+.|| .++ +...+++.+.+ .....++.++|++.|- +-+|.+++++ .+.++++|++
T Consensus 312 ~~~~~~Li~~g~~s~ee~~~i~~e~~~eV~~A~~~A~~~p~P~~~~l~~~VY----ae~p~~l~eq-~~~~~~~~~~ 383 (395)
T d2bfda1 312 SRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVY----QEMPAQLRKQ-QESLARHLQT 383 (395)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHSCBCCGGGGSTTSS----SSCCHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc----cCCCHHHHHH-HHHHHHHHHh
Confidence 367788888887 233 33333433321 2345668888888884 3468777766 3556666654
No 77
>d2hkua1 a.4.1.9 (A:18-87) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=26.83 E-value=39 Score=17.11 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHhh
Q 042650 25 DEMKSLCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 25 D~vr~~~re~i~~~g~~~v~~~~L~~~i 52 (81)
+.|-+.+.+.+.++|. .+|++++.+..
T Consensus 4 ~~Il~aA~~l~~~~G~-~~t~~~Ia~~a 30 (70)
T d2hkua1 4 DALFTAATELFLEHGE-GVPITQICAAA 30 (70)
T ss_dssp HHHHHHHHHHHHHHCT-TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-CchHHHHHHHH
Confidence 4455556666666664 46766666544
No 78
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.64 E-value=69 Score=21.70 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHhcChH--H---HHHHHHHHHH-----HhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 13 LLRERLIECGWR--D---EMKSLCRAYT-----RKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 13 ~L~~rL~e~GW~--D---~vr~~~re~i-----~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
.++.+|.+-||. + +++..+++.+ .+.....++.++|++.|- +-+|.+++++.
T Consensus 295 ~~~~~L~~~g~~~~~el~~i~~e~~~eV~~A~~~A~~sP~P~~~~l~~~Vy----~e~p~~l~eq~ 356 (365)
T d1w85a_ 295 RFRKFLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMF----EELPFNLKEQY 356 (365)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHTSC----SSCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhc----cCCCHHHHHHH
Confidence 467788888873 2 2444444444 223567789999999996 34798888774
No 79
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=26.44 E-value=25 Score=17.75 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHhcChH
Q 042650 6 EKERLKELLRERLIECGWR 24 (81)
Q Consensus 6 e~erL~~~L~~rL~e~GW~ 24 (81)
-.+.|+++++..|.+.-|.
T Consensus 30 RSEaIRdliR~~l~~~~w~ 48 (50)
T d2bj7a1 30 RSEAIRDLIRDFIIRHEWE 48 (50)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3578888888888888774
No 80
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.21 E-value=38 Score=22.03 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=36.1
Q ss_pred hcChHHHHHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHh
Q 042650 20 ECGWRDEMKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 20 e~GW~D~vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL 76 (81)
|.+|. .++...+.+.. +...+.+|++|+..|.--...-..+.+...+...|..++
T Consensus 6 e~~W~-~L~~ai~~I~~-~~~~~~s~e~lY~~vy~lc~~~~~~~LY~~l~~~l~~~~ 60 (347)
T d2hyec2 6 QDTWR-KLHEAVRAVQS-STSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHV 60 (347)
T ss_dssp TTHHH-HHHHHHHTTST-TCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 34564 45666665554 345678999999999877766666666665555555554
No 81
>d1bvyf_ c.23.5.1 (F:) FMN-binding domain of the cytochrome P450bm-3 {Bacillus megaterium [TaxId: 1404]}
Probab=25.77 E-value=20 Score=21.08 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHHHHhcChHHHHH
Q 042650 3 ESGEKERLKELLRERLIECGWRDEMK 28 (81)
Q Consensus 3 esGe~erL~~~L~~rL~e~GW~D~vr 28 (81)
++|+-+++.+.|...|.+.|....|.
T Consensus 11 ~tGnae~~A~~l~~~l~~~g~~~~v~ 36 (152)
T d1bvyf_ 11 NMGTAEGTARDLADIAMSKGFAPQVA 36 (152)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEE
T ss_pred CchHHHHHHHHHHHHHHhCCCCceec
Confidence 68999999999999999888765443
No 82
>d1ldja1 a.4.5.34 (A:687-776) Anaphase promoting complex (APC) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.55 E-value=51 Score=18.06 Aligned_cols=35 Identities=3% Similarity=0.016 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhchhhhccCCHH
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHVITPKGRASVPDP 63 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~ 63 (81)
+....=.+++.++ .+++++|+.++..+-....|.+
T Consensus 25 i~AaIVRIMK~~k--~l~h~~L~~~v~~~l~~~F~p~ 59 (90)
T d1ldja1 25 IQAAIVRIMKMRK--VLKHQQLLGEVLTQLSSRFKPR 59 (90)
T ss_dssp HHHHHHHHHHHSS--EEEHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHhc--cCcHHHHHHHHHHHHhccCCCC
Confidence 4444445667764 7899999999999988766653
No 83
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=25.25 E-value=24 Score=19.83 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.1
Q ss_pred hccCCHHHHHHHHHHHH
Q 042650 57 RASVPDPVKAELLQRIR 73 (81)
Q Consensus 57 r~~VP~~vk~Ell~~Ir 73 (81)
..+||++|.+-|.++.|
T Consensus 142 ~~lVP~~V~~yI~e~~~ 158 (163)
T d1o6ba_ 142 SEFVPPEVELALQQKFR 158 (163)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 68899999998887754
No 84
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=24.51 E-value=46 Score=17.91 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHhhchhhhccCCHHHHHHH
Q 042650 31 CRAYTRKKGRNNVTVDDLVHVITPKGRASVPDPVKAEL 68 (81)
Q Consensus 31 ~re~i~~~g~~~v~~~~L~~~i~P~Ar~~VP~~vk~El 68 (81)
|-+.+.+.|++.+|-++|.+.+ ..=|..|++++
T Consensus 14 ~L~~l~~~g~~~vSS~~La~~~-----gi~~~qVRKDl 46 (74)
T d2dt5a1 14 ILEELEAQGVHRTSSEQLGGLA-----QVTAFQVRKDL 46 (74)
T ss_dssp HHHHHHHTTCCEECHHHHHHHH-----TSCHHHHHHHH
T ss_pred HHHHHHHCCCeeEcHHHHHHHH-----CcCHHHHHHHH
Confidence 5566777899999999998876 66677787765
No 85
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.41 E-value=12 Score=18.88 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHhcChHH
Q 042650 6 EKERLKELLRERLIECGWRD 25 (81)
Q Consensus 6 e~erL~~~L~~rL~e~GW~D 25 (81)
-.+.|+++++..|.+.-|.+
T Consensus 28 RSEaIRdliR~~l~~~~~~e 47 (48)
T d2hzaa1 28 RSEAIRDILRSALAQEATQQ 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhHhc
Confidence 35778888888888777754
No 86
>d2np3a1 a.4.1.9 (A:35-99) Putative transcriptional regulator SCO0857 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.94 E-value=9.7 Score=19.49 Aligned_cols=23 Identities=9% Similarity=0.222 Sum_probs=3.7
Q ss_pred HHHHHHHhhCCCCCCHHHHHHhh
Q 042650 30 LCRAYTRKKGRNNVTVDDLVHVI 52 (81)
Q Consensus 30 ~~re~i~~~g~~~v~~~~L~~~i 52 (81)
.+.+.+.++|.+.+|++++.+..
T Consensus 4 aA~~l~~~~G~~~~s~~~IA~~a 26 (65)
T d2np3a1 4 AARVCFAERGFDATSLRRIAETA 26 (65)
T ss_dssp HHHHHC-----------------
T ss_pred HHHHHHHHHCcccCCHHHHHHHH
Confidence 45666777777777777776654
No 87
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.84 E-value=25 Score=20.13 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=13.4
Q ss_pred cCCHHHHHHHHHHHH
Q 042650 59 SVPDPVKAELLQRIR 73 (81)
Q Consensus 59 ~VP~~vk~Ell~~Ir 73 (81)
-+|++||..|+..|+
T Consensus 78 ~l~~~vk~~L~~~I~ 92 (94)
T d1kl9a1 78 DLNEDEREVLINNIN 92 (94)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 389999999999997
No 88
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Probab=23.64 E-value=84 Score=23.86 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHhhCC-CCCCHHHHHHhhchhhhccCCHHHHHHHHHHHHHHhhh
Q 042650 23 WRDEMKSLCRAYTRKKGR-NNVTVDDLVHVITPKGRASVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 23 W~D~vr~~~re~i~~~g~-~~v~~~~L~~~i~P~Ar~~VP~~vk~Ell~~Ir~fL~~ 78 (81)
|..+|=+.--+.+.+-|+ .|--+.+|++.| ..+|++-+.+|...|.+.+..
T Consensus 273 ffkdvFeKh~~~l~~lGvn~nnGlgdl~~ki-----~~Lp~~~r~eI~adi~~~~~~ 324 (740)
T d1itwa_ 273 FYKDALTKHAEVLKQIGFDVNNGIGDLYARI-----KTLPEAKQKEIEADIQAVYAQ 324 (740)
T ss_dssp HTHHHHHHTHHHHHHTTCCGGGCHHHHHHHG-----GGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcccCHHHHHHHH-----HhcChhHHHHHHHHHHHHHHh
Confidence 333444444455666675 344799999999 789999999999999999865
No 89
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.57 E-value=40 Score=19.98 Aligned_cols=30 Identities=27% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHHhhchhhh-ccCCHHHHHHHHHHHHHHh
Q 042650 47 DLVHVITPKGR-ASVPDPVKAELLQRIRSFL 76 (81)
Q Consensus 47 ~L~~~i~P~Ar-~~VP~~vk~Ell~~Ir~fL 76 (81)
+|+.-+.|+.. ..+|..||+.++.-|+.+=
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa 116 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 116 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence 44444444432 4589999999999998763
No 90
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.43 E-value=55 Score=17.79 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=13.6
Q ss_pred cCCHHHHHHHHHHHHHHhhh
Q 042650 59 SVPDPVKAELLQRIRSFLAS 78 (81)
Q Consensus 59 ~VP~~vk~Ell~~Ir~fL~~ 78 (81)
..++.--++++..++.|++.
T Consensus 22 ~~~~~~~e~il~ma~~Y~~D 41 (75)
T d2pmra1 22 IKLSDDEEAVVERALNYRDD 41 (75)
T ss_dssp SCCCHHHHHHHHHHHHHHHH
T ss_pred cccCccHHHHHHHHHHHHHH
Confidence 44444557888888888754
No 91
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.15 E-value=35 Score=22.19 Aligned_cols=20 Identities=20% Similarity=0.624 Sum_probs=13.9
Q ss_pred HHHHHHHHhcChHHHHHHHH
Q 042650 12 ELLRERLIECGWRDEMKSLC 31 (81)
Q Consensus 12 ~~L~~rL~e~GW~D~vr~~~ 31 (81)
+.|..-+.+.||.+++..+.
T Consensus 268 ~vl~~L~~~LGw~~~~~~~~ 287 (289)
T d1q1aa_ 268 EFAEQLVEELGWQEDFEKIL 287 (289)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHh
Confidence 34444456669999998764
No 92
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=20.72 E-value=28 Score=19.08 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHhhchhh
Q 042650 27 MKSLCRAYTRKKGRNNVTVDDLVHVITPKG 56 (81)
Q Consensus 27 vr~~~re~i~~~g~~~v~~~~L~~~i~P~A 56 (81)
----|+.+|+.-|....+..+++.++.-+.
T Consensus 47 ANpdCk~iLral~~~~tl~~emi~~~~~~~ 76 (80)
T d1d1da1 47 SQPDIQQLIRAAPSTLTTPGEIIKYVLDRQ 76 (80)
T ss_dssp SCHHHHHHHHTSCTTCCSTTHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCcHHHHHHHHHHHh
Confidence 345688888887754445577887776554
No 93
>d1hw1a2 a.78.1.1 (A:79-230) Fatty acid responsive transcription factor FadR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.62 E-value=14 Score=21.17 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=11.3
Q ss_pred cchhHHHHHHHHHHHHHhcC
Q 042650 3 ESGEKERLKELLRERLIECG 22 (81)
Q Consensus 3 esGe~erL~~~L~~rL~e~G 22 (81)
+.||.+.-.+.+++-+.++|
T Consensus 123 ~~~D~e~A~~~mr~Hi~~s~ 142 (152)
T d1hw1a2 123 SEGAHDQVYETVRRYGHESG 142 (152)
T ss_dssp HHTCSHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHH
Confidence 45555555555555555555
No 94
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.51 E-value=22 Score=19.83 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.5
Q ss_pred HhhCCCCCCHHHHHHhhchhhhccCCHH
Q 042650 36 RKKGRNNVTVDDLVHVITPKGRASVPDP 63 (81)
Q Consensus 36 ~~~g~~~v~~~~L~~~i~P~Ar~~VP~~ 63 (81)
..-|++.+++...+.++.+.+..++|..
T Consensus 69 ~~~~vs~~tI~k~yk~l~~~~~~lip~~ 96 (109)
T d1vola2 69 DIAGVADVTIRQSYRLIYPRAPDLFPTD 96 (109)
T ss_dssp HHHTCCHHHHHHHHHHHGGGHHHHSCSS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhCChh
Confidence 3346667777777777777777777754
Done!