BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042652
(328 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34642|YOTB_BACSU SPBc2 prophage-derived uncharacterized protein YotB OS=Bacillus
subtilis (strain 168) GN=yotB PE=4 SV=1
Length = 275
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 13/108 (12%)
Query: 52 LRVFVLSDLHTDY--SENMTWVKCLSTTRH---------KKDVLLVAGDVAEKYDDFVLT 100
+++ +SDLH ++ N+ +K TR +VL++AGD E +
Sbjct: 1 MKIDYVSDLHINHWIPWNVNQIKWEKRTREIVNRLISNGNGEVLVIAGDFTEWNQQTLWV 60
Query: 101 MSLLKDRFQRVLFVPGNHDLW--CRGEENDFPDSLEKLNKLLDACRGL 146
+ ++++V F GNHDL+ + ++ + DSL +LN L+ +
Sbjct: 61 LDEAAKQYEKVYFTYGNHDLYLLSKSQKRKYSDSLGRLNDLIQKAADM 108
>sp|Q8K9Z9|APAH_BUCAP Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=apaH PE=3 SV=1
Length = 273
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRV 111
+ ++ +SD+H Y E +K S KKD L +AGD+ + D + + L +R+
Sbjct: 1 MSIYFISDIHGCYKEFKLLLK-KSFFNDKKDFLWIAGDLVSRGPDSLKVIRYLYSLRKRI 59
Query: 112 LFVPGNHDL 120
+ GNHDL
Sbjct: 60 KIILGNHDL 68
>sp|P57242|APAH_BUCAI Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=apaH PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRV 111
+ + +SD+H Y E ++ S+ KKD L +AGD+ + D + + L RV
Sbjct: 1 MSTYFISDIHGCYEEFRILLE-KSSFNDKKDYLWIAGDLVSRGPDSLKVVKYLYSLKDRV 59
Query: 112 LFVPGNHDL 120
V GNHD+
Sbjct: 60 QIVLGNHDI 68
>sp|B8D8U3|APAH_BUCA5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain 5A)
GN=apaH PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRV 111
+ + +SD+H Y E ++ S+ KKD L +AGD+ + D + + L RV
Sbjct: 1 MSTYFISDIHGCYEEFRILLE-KSSFNDKKDYLWIAGDLVSRGPDSLKVVKYLYSLKDRV 59
Query: 112 LFVPGNHDL 120
V GNHD+
Sbjct: 60 QIVLGNHDI 68
>sp|B8D747|APAH_BUCAT Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
GN=apaH PE=3 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRV 111
+ + +SD+H Y E ++ S+ KKD L +AGD+ + D + + L RV
Sbjct: 1 MSTYFISDIHGCYEEFRILLE-KSSFNDKKDYLWIAGDLVSRGPDSLEVVKYLYSLKDRV 59
Query: 112 LFVPGNHDL 120
V GNHD+
Sbjct: 60 QIVLGNHDI 68
>sp|Q9XVS7|NXF1_CAEEL Nuclear RNA export factor 1 OS=Caenorhabditis elegans GN=nxf-1 PE=1
SV=1
Length = 628
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGD-VAEKYDDFVLTMSLLKDRFQRV 111
RV LS+ H D K + K +V+L D + +KY + ++ +SL +R + +
Sbjct: 204 RVLDLSNFHEDEEFK---AKDMMMNLTKGNVMLTVLDHIDDKYGN-IVALSLSNNRIRHL 259
Query: 112 LFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEI-----NPVVIDGLGIIPLFSW 166
+ + E D + K L+ GL VE NPVV S+
Sbjct: 260 DYASALVSIAKFVMELDLSHNHISTEKELEKFAGLPVERFFFEGNPVVESFTQRAAYISY 319
Query: 167 YHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKI 213
H+SF R + G+ + PL V+ + D P R +YPN P+I
Sbjct: 320 IHQSFPRCNMLDGVEVQPL--VVGPDLDIHDAMP-FRAGYYPN-PQI 362
>sp|Q8NGB4|OR4S1_HUMAN Olfactory receptor 4S1 OS=Homo sapiens GN=OR4S1 PE=2 SV=1
Length = 309
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 194 SLQDLCPEKRMLFYPN--LPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLD 251
S D+C YP+ +PK+I F+E +I S +G M + H FG T +
Sbjct: 65 SFADIC-------YPSTTIPKMIADTFVEHKIISFNGCMTQLFSAHFFGGTEIFLLTAMA 117
Query: 252 GIRYVQA--PLAY 262
RYV PL Y
Sbjct: 118 YDRYVAICRPLHY 130
>sp|Q839Z9|CPDA_COXBU 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA
OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase
I) GN=cpdA PE=3 SV=1
Length = 248
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 52 LRVFVLSDLHTD----------YSENMTWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVL 99
+++ +SDLH YS M +S + + D++ + GD+++ Y + +
Sbjct: 6 IKIAQVSDLHLTSENCETSRGRYSNAMNVFSAISLSG-QHDMIFITGDISDDYTENSYKQ 64
Query: 100 TMSLLKDRFQRVLFVPGNHD 119
+ +LK RV +PGNHD
Sbjct: 65 LLEMLKKLTCRVFVIPGNHD 84
>sp|A4SR08|APAH_AERS4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Aeromonas
salmonicida (strain A449) GN=apaH PE=3 SV=1
Length = 273
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 81 KDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL 120
KDVL + GD+ + D + T+ +K QR + V GNHDL
Sbjct: 29 KDVLWLCGDLVARGPDSLKTLRYVKSLGQRAVTVLGNHDL 68
>sp|Q7A028|NREB_STAAW Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain MW2) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|A8Z581|NREB_STAAT Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain USA300 / TCH1516) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q6G6S9|NREB_STAAS Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain MSSA476) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q99RN7|NREB_STAAN Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain N315) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|A6QJN2|NREB_STAAE Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain Newman) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q5HDG4|NREB_STAAC Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain COL) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q2YZ41|NREB_STAAB Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|A5IVH3|NREB_STAA9 Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain JH9) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q2FVM6|NREB_STAA8 Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain NCTC 8325) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q2FEA5|NREB_STAA3 Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain USA300) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|A6U4C1|NREB_STAA2 Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain JH1) GN=nreB PE=3 SV=1
Length = 344
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q931F6|NREB_STAAM Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=nreB PE=3 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|A7X624|NREB_STAA1 Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain Mu3 / ATCC 700698) GN=nreB PE=3 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ GI+I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGIKII 239
>sp|Q8CR97|NREB_STAES Oxygen sensor histidine kinase NreB OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=nreB PE=3 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 136 LNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDR--------EKDISGIR 181
L++L+D R + VE+ P +D LGI F Y + F+ + +I G+R
Sbjct: 195 LSQLIDDIRNMSVELRPSSLDDLGIEAAFKSYFKQFEENYGMHIKYDSNIKGMR 248
>sp|Q5HLK5|NREB_STAEQ Oxygen sensor histidine kinase NreB OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=nreB PE=3 SV=1
Length = 344
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 136 LNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDR--------EKDISGIR 181
L++L+D R + VE+ P +D LGI F Y + F+ + +I G+R
Sbjct: 195 LSQLIDDIRNMSVELRPSSLDDLGIEAAFKSYFKQFEENYGMHIKYDSNIKGMR 248
>sp|Q6GE41|NREB_STAAR Oxygen sensor histidine kinase NreB OS=Staphylococcus aureus
(strain MRSA252) GN=nreB PE=3 SV=1
Length = 344
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 138 KLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRIL 183
KL+D R + VE+ P +D LG+ F Y + F+ G++I+
Sbjct: 197 KLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEEN---YGVKII 239
>sp|Q7WZY5|NREB_STACT Oxygen sensor histidine kinase NreB OS=Staphylococcus carnosus
(strain TM300) GN=nreB PE=1 SV=1
Length = 347
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 136 LNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDR 173
+++L+D R L VE+ P +D LG+ F Y + F++
Sbjct: 196 MSRLIDDVRNLSVELRPSSLDDLGLDAAFRSYFKQFEK 233
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,250,636
Number of Sequences: 539616
Number of extensions: 5477042
Number of successful extensions: 11629
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11604
Number of HSP's gapped (non-prelim): 34
length of query: 328
length of database: 191,569,459
effective HSP length: 118
effective length of query: 210
effective length of database: 127,894,771
effective search space: 26857901910
effective search space used: 26857901910
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)