Query 042652
Match_columns 328
No_of_seqs 260 out of 2194
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:17:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03729 acc_ester putative p 99.9 2.3E-25 4.9E-30 203.1 17.1 191 53-262 1-239 (239)
2 cd07404 MPP_MS158 Microscilla 99.9 2.2E-23 4.8E-28 179.4 13.5 160 54-262 1-166 (166)
3 PRK11148 cyclic 3',5'-adenosin 99.9 1.1E-21 2.3E-26 182.6 18.6 222 46-292 9-259 (275)
4 cd07392 MPP_PAE1087 Pyrobaculu 99.9 3.9E-21 8.3E-26 167.4 17.2 174 54-258 1-187 (188)
5 cd07402 MPP_GpdQ Enterobacter 99.9 4.5E-21 9.7E-26 174.0 16.4 210 53-285 1-239 (240)
6 cd07388 MPP_Tt1561 Thermus the 99.9 1E-20 2.2E-25 170.4 15.2 177 51-258 4-203 (224)
7 COG2129 Predicted phosphoester 99.9 1.9E-20 4.1E-25 165.3 15.4 179 50-258 2-201 (226)
8 cd07393 MPP_DR1119 Deinococcus 99.8 1.9E-19 4.1E-24 163.5 14.7 180 54-264 1-229 (232)
9 cd07396 MPP_Nbla03831 Homo sap 99.8 1.1E-17 2.3E-22 155.1 16.1 201 52-285 1-263 (267)
10 cd07395 MPP_CSTP1 Homo sapiens 99.8 7.2E-17 1.6E-21 148.8 19.6 210 50-285 3-254 (262)
11 cd07397 MPP_DevT Myxococcus xa 99.7 9.2E-17 2E-21 145.4 17.1 192 52-259 1-232 (238)
12 cd07379 MPP_239FB Homo sapiens 99.7 6.3E-17 1.4E-21 134.7 13.6 127 53-259 1-135 (135)
13 PRK11340 phosphodiesterase Yae 99.7 6.5E-17 1.4E-21 150.2 14.6 89 28-123 31-127 (271)
14 PF14582 Metallophos_3: Metall 99.7 1.3E-15 2.8E-20 134.5 13.2 181 52-262 6-237 (255)
15 cd07400 MPP_YydB Bacillus subt 99.6 2.7E-15 5.8E-20 125.7 13.0 123 54-258 1-142 (144)
16 TIGR00040 yfcE phosphoesterase 99.6 7.8E-15 1.7E-19 125.3 14.9 150 52-282 1-151 (158)
17 PRK09453 phosphodiesterase; Pr 99.6 4.9E-15 1.1E-19 129.6 13.8 68 52-121 1-76 (182)
18 COG1768 Predicted phosphohydro 99.6 6.6E-15 1.4E-19 125.2 12.8 181 52-264 1-223 (230)
19 cd07401 MPP_TMEM62_N Homo sapi 99.6 1.1E-14 2.3E-19 134.3 14.8 184 54-263 2-233 (256)
20 PF12850 Metallophos_2: Calcin 99.6 5E-15 1.1E-19 124.9 10.7 152 52-281 1-153 (156)
21 cd00841 MPP_YfcE Escherichia c 99.6 3.4E-14 7.5E-19 120.5 14.0 146 53-282 1-147 (155)
22 cd07394 MPP_Vps29 Homo sapiens 99.6 1.2E-13 2.6E-18 120.6 16.3 135 53-265 1-139 (178)
23 cd07385 MPP_YkuE_C Bacillus su 99.5 8E-14 1.7E-18 125.0 13.4 72 51-124 1-79 (223)
24 COG1409 Icc Predicted phosphoh 99.5 3.7E-13 7.9E-18 124.8 16.9 70 52-123 1-80 (301)
25 COG0622 Predicted phosphoester 99.5 3.2E-13 6.9E-18 116.9 15.1 139 51-264 1-141 (172)
26 cd07403 MPP_TTHA0053 Thermus t 99.5 8.6E-14 1.9E-18 115.2 11.1 119 55-263 1-125 (129)
27 PRK05340 UDP-2,3-diacylglucosa 99.5 5.2E-14 1.1E-18 128.5 9.5 71 52-122 1-84 (241)
28 cd07399 MPP_YvnB Bacillus subt 99.5 4.2E-13 9E-18 120.5 14.4 68 52-121 1-82 (214)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.5 3.4E-14 7.5E-19 126.9 6.5 70 53-124 1-92 (223)
30 cd00839 MPP_PAPs purple acid p 99.5 3.3E-13 7.2E-18 126.2 12.9 118 50-167 3-127 (294)
31 cd07383 MPP_Dcr2 Saccharomyces 99.4 1.1E-12 2.3E-17 116.2 12.7 71 51-122 2-90 (199)
32 PF00149 Metallophos: Calcineu 99.4 2.3E-13 4.9E-18 113.3 7.4 70 52-122 1-79 (200)
33 cd07378 MPP_ACP5 Homo sapiens 99.4 1.6E-12 3.4E-17 120.6 12.9 210 52-284 1-266 (277)
34 cd00844 MPP_Dbr1_N Dbr1 RNA la 99.4 9.3E-12 2E-16 114.9 15.0 180 54-249 1-232 (262)
35 TIGR01854 lipid_A_lpxH UDP-2,3 99.4 4E-12 8.7E-17 115.4 12.3 68 55-122 2-82 (231)
36 COG1408 Predicted phosphohydro 99.3 7.4E-12 1.6E-16 116.8 10.5 95 26-125 22-122 (284)
37 TIGR00583 mre11 DNA repair pro 99.3 1.2E-11 2.7E-16 120.5 10.7 72 50-123 2-125 (405)
38 cd07390 MPP_AQ1575 Aquifex aeo 99.3 4.5E-11 9.7E-16 103.3 11.4 67 55-122 2-83 (168)
39 PLN02533 probable purple acid 99.3 1E-10 2.3E-15 115.3 14.7 193 50-259 138-356 (427)
40 cd00842 MPP_ASMase acid sphing 99.3 6.8E-11 1.5E-15 111.0 12.8 165 71-250 59-266 (296)
41 cd00838 MPP_superfamily metall 99.2 7E-11 1.5E-15 95.1 10.8 63 55-119 1-69 (131)
42 cd08163 MPP_Cdc1 Saccharomyces 99.2 4.7E-10 1E-14 103.5 16.8 159 77-251 42-234 (257)
43 COG4186 Predicted phosphoester 99.2 5.1E-10 1.1E-14 93.5 14.9 84 51-134 3-99 (186)
44 cd08165 MPP_MPPE1 human MPPE1 99.2 2.3E-10 4.9E-15 97.8 12.4 47 77-123 35-91 (156)
45 PRK04036 DNA polymerase II sma 99.2 5.1E-10 1.1E-14 112.5 15.9 199 35-259 224-466 (504)
46 cd07398 MPP_YbbF-LpxH Escheric 99.1 9.9E-11 2.1E-15 104.5 7.3 68 55-122 1-83 (217)
47 cd07386 MPP_DNA_pol_II_small_a 99.1 5.7E-10 1.2E-14 102.0 12.2 68 55-122 2-95 (243)
48 COG2908 Uncharacterized protei 99.1 3.5E-10 7.5E-15 101.3 9.5 68 55-122 1-81 (237)
49 PRK09968 serine/threonine-spec 99.1 1.2E-09 2.5E-14 98.5 12.6 67 52-121 15-81 (218)
50 KOG3947 Phosphoesterases [Gene 99.1 2.1E-10 4.6E-15 103.9 7.7 193 48-263 58-283 (305)
51 TIGR00619 sbcd exonuclease Sbc 99.0 6.4E-10 1.4E-14 102.4 7.6 71 52-122 1-89 (253)
52 PRK10966 exonuclease subunit S 99.0 7.5E-10 1.6E-14 108.5 7.8 71 52-122 1-88 (407)
53 COG0420 SbcD DNA repair exonuc 99.0 8.2E-10 1.8E-14 107.8 6.6 71 52-124 1-91 (390)
54 PHA02546 47 endonuclease subun 98.9 1.7E-09 3.7E-14 103.7 7.9 71 52-122 1-90 (340)
55 PRK00166 apaH diadenosine tetr 98.9 1.7E-09 3.7E-14 100.6 6.6 68 52-120 1-68 (275)
56 PHA02239 putative protein phos 98.9 4.4E-09 9.6E-14 95.8 6.6 70 52-121 1-73 (235)
57 TIGR03767 P_acnes_RR metalloph 98.8 2.2E-07 4.7E-12 91.6 18.4 118 152-287 295-437 (496)
58 cd07384 MPP_Cdc1_like Saccharo 98.8 2.8E-08 6.2E-13 86.2 11.0 48 77-124 42-103 (171)
59 cd00845 MPP_UshA_N_like Escher 98.8 1.2E-07 2.6E-12 86.7 14.7 69 52-123 1-84 (252)
60 cd08166 MPP_Cdc1_like_1 unchar 98.8 6.9E-08 1.5E-12 85.1 12.1 47 77-123 39-95 (195)
61 cd07410 MPP_CpdB_N Escherichia 98.8 7.2E-08 1.6E-12 89.8 12.9 69 52-123 1-97 (277)
62 TIGR00668 apaH bis(5'-nucleosy 98.7 1.3E-08 2.7E-13 94.4 6.1 68 52-120 1-68 (279)
63 PRK11439 pphA serine/threonine 98.7 1.3E-08 2.9E-13 91.6 5.6 67 52-121 17-83 (218)
64 cd07424 MPP_PrpA_PrpB PrpA and 98.7 1.7E-08 3.6E-13 90.1 6.1 68 52-122 1-68 (207)
65 cd07423 MPP_PrpE Bacillus subt 98.7 1.4E-08 3.1E-13 92.3 5.7 70 52-121 1-80 (234)
66 cd07422 MPP_ApaH Escherichia c 98.7 1.8E-08 3.9E-13 92.9 6.2 67 54-121 1-67 (257)
67 PRK13625 bis(5'-nucleosyl)-tet 98.6 4.1E-08 8.9E-13 90.0 5.8 70 52-121 1-79 (245)
68 cd07425 MPP_Shelphs Shewanella 98.6 5.6E-08 1.2E-12 86.9 5.2 68 55-122 1-81 (208)
69 cd07380 MPP_CWF19_N Schizosacc 98.6 2.9E-07 6.3E-12 78.1 9.2 118 55-244 1-121 (150)
70 TIGR00024 SbcD_rel_arch putati 98.6 1.1E-07 2.5E-12 86.0 7.0 71 52-122 15-103 (225)
71 PRK09419 bifunctional 2',3'-cy 98.6 2.2E-06 4.9E-11 94.4 18.4 92 29-124 637-739 (1163)
72 cd07391 MPP_PF1019 Pyrococcus 98.6 8.4E-08 1.8E-12 83.1 5.4 68 55-122 1-89 (172)
73 PTZ00422 glideosome-associated 98.5 9.2E-07 2E-11 85.7 12.2 75 50-124 25-112 (394)
74 cd00144 MPP_PPP_family phospho 98.5 1.2E-07 2.5E-12 85.1 5.4 66 55-122 1-69 (225)
75 cd07413 MPP_PA3087 Pseudomonas 98.5 2.2E-07 4.8E-12 83.9 5.9 67 55-121 2-76 (222)
76 cd07406 MPP_CG11883_N Drosophi 98.5 3.1E-06 6.8E-11 78.0 13.7 69 52-123 1-85 (257)
77 cd07412 MPP_YhcR_N Bacillus su 98.4 4.8E-06 1E-10 78.1 14.5 70 52-123 1-90 (288)
78 cd07408 MPP_SA0022_N Staphyloc 98.4 2E-06 4.3E-11 79.3 11.5 69 52-123 1-84 (257)
79 TIGR03768 RPA4764 metallophosp 98.4 3.7E-06 8E-11 82.4 13.6 46 77-122 96-171 (492)
80 KOG2310 DNA repair exonuclease 98.4 2E-06 4.4E-11 84.6 10.9 77 49-125 11-137 (646)
81 COG1311 HYS2 Archaeal DNA poly 98.4 6.1E-06 1.3E-10 80.8 13.5 83 44-126 218-326 (481)
82 cd07421 MPP_Rhilphs Rhilph pho 98.3 9.7E-07 2.1E-11 82.3 6.4 69 53-121 3-80 (304)
83 KOG1378 Purple acid phosphatas 98.3 4.1E-06 9E-11 81.7 10.8 185 48-246 144-345 (452)
84 cd07411 MPP_SoxB_N Thermus the 98.3 1.4E-05 3.1E-10 73.9 13.2 68 52-123 1-97 (264)
85 KOG2679 Purple (tartrate-resis 98.2 1.1E-05 2.5E-10 73.5 11.1 205 42-265 34-277 (336)
86 KOG2863 RNA lariat debranching 98.2 1.7E-06 3.8E-11 81.3 5.1 180 52-247 1-232 (456)
87 KOG1432 Predicted DNA repair e 98.2 4.7E-06 1E-10 78.2 7.8 83 41-124 43-150 (379)
88 cd07409 MPP_CD73_N CD73 ecto-5 98.1 3.2E-05 7E-10 72.3 11.3 70 52-124 1-97 (281)
89 KOG3770 Acid sphingomyelinase 98.1 5.1E-05 1.1E-09 76.1 13.0 53 70-122 200-264 (577)
90 COG1407 Predicted ICC-like pho 98.0 1.1E-05 2.4E-10 72.8 6.4 71 51-123 19-112 (235)
91 cd07405 MPP_UshA_N Escherichia 97.9 0.00016 3.5E-09 67.8 12.9 72 52-124 1-90 (285)
92 smart00156 PP2Ac Protein phosp 97.9 2.3E-05 5.1E-10 72.9 6.4 69 52-122 28-100 (271)
93 KOG3662 Cell division control 97.8 0.00012 2.6E-09 71.0 10.5 78 47-124 44-147 (410)
94 PRK09558 ushA bifunctional UDP 97.8 0.00032 6.8E-09 71.7 13.0 74 50-124 33-124 (551)
95 cd07407 MPP_YHR202W_N Saccharo 97.8 0.0013 2.7E-08 61.7 15.7 73 50-123 4-99 (282)
96 PRK09418 bifunctional 2',3'-cy 97.7 0.00042 9.1E-09 73.2 13.4 26 233-258 277-302 (780)
97 cd07416 MPP_PP2B PP2B, metallo 97.7 5.9E-05 1.3E-09 71.4 6.3 67 53-121 44-114 (305)
98 PRK09419 bifunctional 2',3'-cy 97.7 0.00025 5.4E-09 78.5 12.0 71 50-123 40-141 (1163)
99 cd07415 MPP_PP2A_PP4_PP6 PP2A, 97.7 6.8E-05 1.5E-09 70.2 5.9 68 53-122 43-114 (285)
100 cd07420 MPP_RdgC Drosophila me 97.6 7.3E-05 1.6E-09 71.0 5.5 71 52-124 51-126 (321)
101 cd07414 MPP_PP1_PPKL PP1, PPKL 97.6 7.7E-05 1.7E-09 70.2 5.5 68 53-122 51-122 (293)
102 TIGR01390 CycNucDiestase 2',3' 97.6 0.0014 3E-08 68.0 14.6 71 51-123 2-101 (626)
103 PTZ00480 serine/threonine-prot 97.5 0.00012 2.6E-09 69.5 5.6 69 53-123 60-132 (320)
104 PTZ00239 serine/threonine prot 97.5 0.00014 3E-09 68.7 6.0 68 53-122 44-115 (303)
105 PHA03008 hypothetical protein; 97.5 0.0083 1.8E-07 52.3 16.0 55 186-259 164-221 (234)
106 PRK11907 bifunctional 2',3'-cy 97.5 0.0039 8.4E-08 66.2 17.0 72 51-124 115-216 (814)
107 KOG3325 Membrane coat complex 97.5 0.0053 1.1E-07 51.4 14.2 129 52-258 1-132 (183)
108 cd07418 MPP_PP7 PP7, metalloph 97.5 0.00014 3E-09 70.4 5.7 70 52-123 66-140 (377)
109 cd07417 MPP_PP5_C PP5, C-termi 97.5 0.00014 3E-09 69.1 5.6 70 51-121 59-132 (316)
110 cd07419 MPP_Bsu1_C Arabidopsis 97.5 0.00016 3.5E-09 68.6 6.1 69 53-121 49-127 (311)
111 PTZ00244 serine/threonine-prot 97.5 0.00014 3.1E-09 68.4 5.2 67 54-122 54-124 (294)
112 PRK09420 cpdB bifunctional 2', 97.4 0.0052 1.1E-07 64.0 15.3 72 50-123 24-124 (649)
113 TIGR00282 metallophosphoestera 97.3 0.01 2.2E-07 55.1 15.4 70 52-123 1-73 (266)
114 cd08162 MPP_PhoA_N Synechococc 97.3 0.0037 8.1E-08 59.4 12.8 72 52-124 1-94 (313)
115 cd07382 MPP_DR1281 Deinococcus 97.3 0.0081 1.8E-07 55.4 14.2 69 53-123 1-72 (255)
116 cd07387 MPP_PolD2_C PolD2 (DNA 97.3 0.0015 3.3E-08 60.2 9.3 108 54-165 2-151 (257)
117 TIGR01530 nadN NAD pyrophospha 97.2 0.01 2.2E-07 60.7 15.4 71 52-124 1-97 (550)
118 cd08164 MPP_Ted1 Saccharomyces 97.1 0.00095 2.1E-08 58.9 5.2 47 77-123 41-113 (193)
119 PTZ00235 DNA polymerase epsilo 96.6 0.0093 2E-07 55.6 8.4 88 30-123 12-124 (291)
120 PF04042 DNA_pol_E_B: DNA poly 96.6 0.005 1.1E-07 54.7 6.0 68 54-123 1-93 (209)
121 COG0737 UshA 5'-nucleotidase/2 95.1 0.044 9.5E-07 55.7 6.4 74 49-124 24-118 (517)
122 KOG0374 Serine/threonine speci 94.9 0.029 6.2E-07 53.7 4.2 71 53-125 60-135 (331)
123 cd07381 MPP_CapA CapA and rela 94.6 2 4.3E-05 38.8 15.4 27 98-124 67-93 (239)
124 KOG0371 Serine/threonine prote 94.3 0.072 1.6E-06 48.7 4.9 65 54-121 62-131 (319)
125 KOG0373 Serine/threonine speci 94.1 0.11 2.4E-06 46.5 5.4 66 54-122 48-118 (306)
126 KOG0372 Serine/threonine speci 93.5 0.14 2.9E-06 46.7 5.1 69 54-124 45-117 (303)
127 smart00854 PGA_cap Bacterial c 92.1 3.1 6.8E-05 37.6 12.3 27 98-124 63-89 (239)
128 KOG3818 DNA polymerase epsilon 89.5 1.3 2.7E-05 43.7 7.3 76 50-125 281-373 (525)
129 COG1692 Calcineurin-like phosp 86.3 1.9 4.1E-05 39.4 6.0 69 52-122 1-72 (266)
130 KOG0375 Serine-threonine phosp 85.4 0.76 1.7E-05 44.0 3.1 70 54-125 90-163 (517)
131 KOG2476 Uncharacterized conser 84.7 1.5 3.2E-05 43.5 4.8 68 52-119 6-76 (528)
132 PF06874 FBPase_2: Firmicute f 82.9 0.81 1.8E-05 46.9 2.3 47 77-124 181-228 (640)
133 cd07424 MPP_PrpA_PrpB PrpA and 79.8 2.6 5.5E-05 37.3 4.2 26 233-258 168-193 (207)
134 COG3855 Fbp Uncharacterized pr 74.1 2.5 5.4E-05 42.0 2.6 47 77-124 187-234 (648)
135 PF09423 PhoD: PhoD-like phosp 70.4 12 0.00027 37.2 6.7 42 49-92 103-144 (453)
136 TIGR01768 GGGP-family geranylg 69.5 12 0.00025 33.9 5.7 52 69-122 18-69 (223)
137 PF09587 PGA_cap: Bacterial ca 69.5 36 0.00078 30.9 9.1 27 98-124 65-91 (250)
138 TIGR01769 GGGP geranylgeranylg 63.0 20 0.00043 32.0 5.8 46 77-122 21-67 (205)
139 PRK11439 pphA serine/threonine 62.3 8.9 0.00019 34.2 3.5 30 233-262 179-208 (218)
140 cd02067 B12-binding B12 bindin 60.6 24 0.00052 27.9 5.5 52 67-120 39-92 (119)
141 PRK04169 geranylgeranylglycery 60.0 23 0.0005 32.2 5.8 51 71-123 25-75 (232)
142 KOG0074 GTP-binding ADP-ribosy 57.6 6.3 0.00014 33.2 1.6 36 268-303 43-86 (185)
143 PRK13600 putative ribosomal pr 57.3 36 0.00078 25.9 5.5 43 69-115 20-62 (84)
144 cd07423 MPP_PrpE Bacillus subt 56.0 16 0.00035 32.9 4.1 30 233-262 181-210 (234)
145 COG1646 Predicted phosphate-bi 55.0 30 0.00064 31.5 5.5 54 68-123 31-85 (240)
146 cd07425 MPP_Shelphs Shewanella 46.8 29 0.00062 30.8 4.2 30 218-253 158-189 (208)
147 PF13277 YmdB: YmdB-like prote 45.3 90 0.002 28.8 7.1 66 55-122 1-69 (253)
148 KOG0376 Serine-threonine phosp 43.5 16 0.00034 36.6 2.1 70 50-120 212-285 (476)
149 cd02071 MM_CoA_mut_B12_BD meth 42.8 57 0.0012 26.1 5.0 48 68-117 40-89 (122)
150 KOG4419 5' nucleotidase [Nucle 38.7 50 0.0011 34.0 4.8 74 50-124 41-137 (602)
151 PF01884 PcrB: PcrB family; I 38.1 72 0.0016 29.0 5.4 51 69-123 23-74 (230)
152 cd02068 radical_SAM_B12_BD B12 37.8 91 0.002 24.9 5.5 48 68-118 28-77 (127)
153 PRK01395 V-type ATP synthase s 37.2 56 0.0012 25.8 4.0 67 50-121 2-84 (104)
154 TIGR00640 acid_CoA_mut_C methy 36.3 81 0.0018 25.9 5.0 49 68-118 43-93 (132)
155 cd01141 TroA_d Periplasmic bin 36.0 1.2E+02 0.0026 25.6 6.3 35 77-116 66-100 (186)
156 COG2248 Predicted hydrolase (m 35.9 1.9E+02 0.0041 27.0 7.6 52 51-106 176-233 (304)
157 TIGR01319 glmL_fam conserved h 34.3 85 0.0018 31.6 5.6 49 69-120 111-162 (463)
158 PRK01018 50S ribosomal protein 33.1 1.1E+02 0.0023 23.9 4.9 46 69-118 23-68 (99)
159 PRK13602 putative ribosomal pr 32.8 73 0.0016 23.9 3.9 47 69-119 18-64 (82)
160 cd06292 PBP1_LacI_like_10 Liga 32.1 1.2E+02 0.0026 26.9 6.0 62 51-115 29-90 (273)
161 KOG2232 Ceramidases [Signal tr 31.8 56 0.0012 33.2 3.8 46 220-265 98-147 (734)
162 cd02812 PcrB_like PcrB_like pr 29.9 91 0.002 28.1 4.6 43 79-122 24-68 (219)
163 PRK02228 V-type ATP synthase s 29.7 1.2E+02 0.0026 23.6 4.8 38 77-116 41-79 (100)
164 TIGR00111 pelota probable tran 29.4 1.2E+02 0.0026 29.3 5.6 44 78-121 291-334 (351)
165 TIGR00272 DPH2 diphthamide bio 28.8 91 0.002 31.7 4.9 57 51-122 81-137 (496)
166 PF02421 FeoB_N: Ferrous iron 28.6 1.1E+02 0.0025 25.8 4.8 43 77-120 75-117 (156)
167 COG1358 RPL8A Ribosomal protei 27.3 1.9E+02 0.004 23.4 5.5 45 70-118 35-80 (116)
168 PRK06683 hypothetical protein; 27.2 1.4E+02 0.0031 22.3 4.6 43 69-115 18-60 (82)
169 TIGR01305 GMP_reduct_1 guanosi 26.4 1.3E+02 0.0029 28.9 5.3 49 70-120 111-160 (343)
170 cd08164 MPP_Ted1 Saccharomyces 25.6 48 0.001 29.3 2.0 18 233-250 144-161 (193)
171 PRK05096 guanosine 5'-monophos 24.8 1.3E+02 0.0029 29.0 4.9 48 71-120 113-161 (346)
172 cd06302 PBP1_LsrB_Quorum_Sensi 24.4 2.2E+02 0.0049 25.9 6.4 59 51-114 29-87 (298)
173 cd07389 MPP_PhoD Bacillus subt 24.1 4E+02 0.0086 23.3 7.8 17 108-124 89-105 (228)
174 COG3426 Butyrate kinase [Energ 23.8 71 0.0015 30.2 2.8 41 77-121 293-336 (358)
175 TIGR03413 GSH_gloB hydroxyacyl 23.7 1.2E+02 0.0026 27.5 4.4 41 82-123 119-169 (248)
176 KOG0377 Protein serine/threoni 23.4 37 0.00081 33.8 0.9 70 52-123 165-239 (631)
177 TIGR00024 SbcD_rel_arch putati 23.4 49 0.0011 29.8 1.7 19 234-252 135-153 (225)
178 PRK13601 putative L7Ae-like ri 23.3 1.7E+02 0.0037 22.0 4.4 42 69-114 15-56 (82)
179 PF13941 MutL: MutL protein 23.2 1.4E+02 0.0031 30.0 5.0 48 70-120 116-166 (457)
180 KOG3873 Sphingomyelinase famil 23.1 1E+02 0.0022 30.1 3.8 17 77-93 166-182 (422)
181 cd01575 PBP1_GntR Ligand-bindi 22.9 2.8E+02 0.0061 24.2 6.6 59 51-118 29-87 (268)
182 TIGR01501 MthylAspMutase methy 22.4 2.5E+02 0.0054 23.2 5.6 49 68-118 42-92 (134)
183 PF03465 eRF1_3: eRF1 domain 3 22.4 1E+02 0.0022 24.5 3.2 50 69-120 28-94 (113)
184 PRK14048 ferrichrome/ferrioxam 21.9 2.3E+02 0.005 27.2 6.2 39 77-116 118-156 (374)
185 PTZ00106 60S ribosomal protein 21.7 2.1E+02 0.0045 22.7 4.8 46 69-118 32-77 (108)
186 TIGR02707 butyr_kinase butyrat 21.6 1.3E+02 0.0028 29.1 4.3 39 80-119 293-331 (351)
187 PRK05583 ribosomal protein L7A 20.8 2.4E+02 0.0053 22.1 5.0 42 69-114 24-65 (104)
188 cd01938 ADPGK_ADPPFK ADP-depen 20.7 1.1E+02 0.0024 30.7 3.7 38 50-89 177-214 (445)
189 PRK07714 hypothetical protein; 20.6 2.3E+02 0.0049 21.9 4.8 41 70-114 26-66 (100)
190 TIGR02634 xylF D-xylose ABC tr 20.5 2.5E+02 0.0053 25.8 5.9 58 51-114 28-85 (302)
191 cd02065 B12-binding_like B12 b 20.5 2.2E+02 0.0049 22.0 4.9 49 68-118 40-89 (125)
192 PF00072 Response_reg: Respons 20.2 2.3E+02 0.0049 21.0 4.7 47 69-119 34-82 (112)
No 1
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.93 E-value=2.3e-25 Score=203.08 Aligned_cols=191 Identities=23% Similarity=0.358 Sum_probs=125.0
Q ss_pred EEEEEeCCCCCCccc------HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHh-cCCcEEEECCCCCCCCCCC
Q 042652 53 RVFVLSDLHTDYSEN------MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKD-RFQRVLFVPGNHDLWCRGE 125 (328)
Q Consensus 53 ri~~iSDlH~~~~~~------~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~-~~~~v~~V~GNHD~~~~~~ 125 (328)
||+++||+|++.... .++++.+ ++.++|+||++||+++.......+++.+.+ ...|+++|+||||++....
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~--~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~~~~pv~~v~GNHD~~~~~~ 78 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYL--KKQKIDHLHIAGDISNDFQRSLPFIEKLQELKGIKVTFNAGNHDMLKDLT 78 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHH--HhcCCCEEEECCccccchhhHHHHHHHHHHhcCCcEEEECCCCCCCCCCC
Confidence 689999999874321 2344545 456799999999999875444555666665 3579999999999873321
Q ss_pred CCchhhHHHHHHHHHhcccccccccceEEE--cCEEEeccCCCCCCCCCCcccc-----------------cCC------
Q 042652 126 ENDFPDSLEKLNKLLDACRGLGVEINPVVI--DGLGIIPLFSWYHESFDREKDI-----------------SGI------ 180 (328)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i--~g~~iiG~~~w~~~~f~~e~~i-----------------~~~------ 180 (328)
. .. +.. ......+++..+.+ ++++|+|+++|++++|..+... ...
T Consensus 79 ---~-~~---~~~---~~~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 148 (239)
T TIGR03729 79 ---Y-EE---IES---NDSPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRPMSDPERT 148 (239)
T ss_pred ---H-HH---HHh---ccchhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCCCChHHHH
Confidence 1 11 111 00112234444445 8899999999999876431110 000
Q ss_pred ----cc----------CCcceeeecccCcccccc-cccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccC
Q 042652 181 ----RI----------LPLEMVIHFLFSLQDLCP-EKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFS 245 (328)
Q Consensus 181 ----~~----------~~~~lv~H~p~P~~~~~~-~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~ 245 (328)
.| .+..++|||| |....++ ......|..+....|+..+.+.|++.. +++|||||+|.+
T Consensus 149 ~~~l~~l~~~l~~~~~~~~ivvtH~p-P~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~------v~~~i~GH~H~~ 221 (239)
T TIGR03729 149 AIVLKQLKKQLNQLDNKQVIFVTHFV-PHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYE------IKDVIFGHLHRR 221 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEccc-chHHHhcCCCCCcchhhhhhccChHHHHHHHHHhC------CCEEEECCccCC
Confidence 00 1233889999 9865441 000001233345778888888888763 679999999999
Q ss_pred C-ceEECCEEEEeccccC
Q 042652 246 W-DAVLDGIRYVQAPLAY 262 (328)
Q Consensus 246 ~-~~~~~g~~~v~~~~gy 262 (328)
. ..+++||+|++||+||
T Consensus 222 ~~~~~i~~~~~~~~~~gy 239 (239)
T TIGR03729 222 FGPLTIGGTTYHNRPLGY 239 (239)
T ss_pred CCCEEECCEEEEecCCCC
Confidence 8 5678999999999998
No 2
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.90 E-value=2.2e-23 Score=179.39 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=106.5
Q ss_pred EEEEeCCCCCCcccHHHH-HHHhhcCCCCCEEEEcccccCCchhHHHH-HHHHHhcCCcEEEECCCCCCCCCCCCCchhh
Q 042652 54 VFVLSDLHTDYSENMTWV-KCLSTTRHKKDVLLVAGDVAEKYDDFVLT-MSLLKDRFQRVLFVPGNHDLWCRGEENDFPD 131 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l-~~l~~~~~~~D~li~~GDi~~~~~~~~~~-~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~ 131 (328)
|+++||+|++......++ +.+ ...++|+|+++||+++........ +........|+++|+||||++
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~--~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~v~GNHD~~---------- 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFP--IAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIYVPGNHEFY---------- 68 (166)
T ss_pred CceEccccccCccccccccccC--CCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEEeCCCcceE----------
Confidence 578999999876544333 222 467899999999999875322222 122333467999999999985
Q ss_pred HHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcc----cccCCccCCcceeeecccCcccccccccccCC
Q 042652 132 SLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREK----DISGIRILPLEMVIHFLFSLQDLCPEKRMLFY 207 (328)
Q Consensus 132 ~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~----~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~ 207 (328)
++++|.++|++.++..+. .+++.+ .+..+++||| |....++.+.. +
T Consensus 69 --------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~-~~~vv~~Hhp-P~~~~~~~~~~--~ 118 (166)
T cd07404 69 --------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR-GKTVVVTHHA-PSPLSLAPQYG--D 118 (166)
T ss_pred --------------------------EEEEeeecccccCccchHHHHhCCCCCC-CCEEEEeCCC-CCccccCcccc--C
Confidence 567888899997654432 222222 3456899999 98765543220 1
Q ss_pred CCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEeccccC
Q 042652 208 PNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQAPLAY 262 (328)
Q Consensus 208 ~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~~~gy 262 (328)
. .....++..+.+.++. .++++|+|||+|+.....++|+++++||+||
T Consensus 119 ~-~~~~~~~~~l~~~~~~------~~v~~~i~GH~H~~~~~~~~g~~~~~np~gy 166 (166)
T cd07404 119 S-LVNAAFAVDLDDLILA------DPIDLWIHGHTHFNFDYRIGGTRVLSNQLGY 166 (166)
T ss_pred C-CcchhhhhccHhHHhh------cCCCEEEECCccccceEEECCEEEEecCCCC
Confidence 0 0001122223333333 2588999999999999999999999999998
No 3
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.88 E-value=1.1e-21 Score=182.55 Aligned_cols=222 Identities=15% Similarity=0.184 Sum_probs=136.9
Q ss_pred CCCCCCcEEEEEeCCCCCCcc------------cHHHHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHHhcCCcE
Q 042652 46 STSASGLRVFVLSDLHTDYSE------------NMTWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDRFQRV 111 (328)
Q Consensus 46 ~~~~~~~ri~~iSDlH~~~~~------------~~~~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~~~~v 111 (328)
+.+..+|||++|||+|+.... .++.++.+.....++|+||++||+++.. +.+..+.+.++++..|+
T Consensus 9 ~~~~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~~~~~~~l~~l~~Pv 88 (275)
T PRK11148 9 LAGEARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHSSEAYQHFAEGIAPLRKPC 88 (275)
T ss_pred cCCCCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCCHHHHHHHHHHHhhcCCcE
Confidence 355578999999999983211 1234555533345799999999999975 46778888888888999
Q ss_pred EEECCCCCCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCC-CCC---CCCc------ccccCCc
Q 042652 112 LFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWY-HES---FDRE------KDISGIR 181 (328)
Q Consensus 112 ~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~-~~~---f~~e------~~i~~~~ 181 (328)
++|+||||.... +.+. +.+. .+......+.-++++++++++-. ... +..+ +.+....
T Consensus 89 ~~v~GNHD~~~~-----~~~~------~~~~--~~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL~~~L~~~~ 155 (275)
T PRK11148 89 VWLPGNHDFQPA-----MYSA------LQDA--GISPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWLERKLADAP 155 (275)
T ss_pred EEeCCCCCChHH-----HHHH------Hhhc--CCCccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHHHHHHhhCC
Confidence 999999998421 1111 1111 11111111223457888877621 111 1111 1121111
Q ss_pred cCCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cc
Q 042652 182 ILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PL 260 (328)
Q Consensus 182 ~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~ 260 (328)
-.+..+++||+ |.....+... -....+++.+.+.|+++. ++++++|||+|.......+|+.++.+ +.
T Consensus 156 ~~~~vv~~hH~-P~~~~~~~~d------~~~l~n~~~l~~ll~~~~-----~v~~vl~GH~H~~~~~~~~gi~~~~~ps~ 223 (275)
T PRK11148 156 ERHTLVLLHHH-PLPAGCAWLD------QHSLRNAHELAEVLAKFP-----NVKAILCGHIHQELDLDWNGRRLLATPST 223 (275)
T ss_pred CCCeEEEEcCC-CCCCCcchhh------ccCCCCHHHHHHHHhcCC-----CceEEEecccChHHhceECCEEEEEcCCC
Confidence 12334778998 7643322110 012345667777777652 58899999999999999999988754 56
Q ss_pred cChhhh-h---cccCCCCCCcceEEecCCccccccc
Q 042652 261 AYPRER-K---RRMNGGENQLPYCVYSDGKFADKLS 292 (328)
Q Consensus 261 gy~~~~-~---~~~~~~~g~~~~~l~~dg~~~~~~~ 292 (328)
|++... . ...+..+||+.+.|.++|++.+...
T Consensus 224 ~~q~~~~~~~~~~~~~~~g~~~~~l~~~g~~~~~~~ 259 (275)
T PRK11148 224 CVQFKPHCTNFTLDTVAPGWRELELHADGSLETEVH 259 (275)
T ss_pred cCCcCCCCCccccccCCCcEEEEEEcCCCcEEEEEE
Confidence 775431 1 1123357999999999998877654
No 4
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.87 E-value=3.9e-21 Score=167.41 Aligned_cols=174 Identities=22% Similarity=0.222 Sum_probs=114.8
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchh-HHHHHHHHHhcCCcEEEECCCCCCCCCCCCCchhhH
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDD-FVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDFPDS 132 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~-~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~~ 132 (328)
|+++||+|.+.....+ ..+ +..++|+||++||+++.... ....++.+++...|+++|+||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~--~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~~~~~p~~~v~GNHD~~~~--------- 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IIL--KAEEADAVIVAGDITNFGGKEAAVEINLLLAIGVPVLAVPGNCDTPEI--------- 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHh--hccCCCEEEECCCccCcCCHHHHHHHHHHHhcCCCEEEEcCCCCCHHH---------
Confidence 6899999998754332 233 46789999999999987632 222337787778899999999997421
Q ss_pred HHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCc-----ccccC------CccCCcceeeecccCccccccc
Q 042652 133 LEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDRE-----KDISG------IRILPLEMVIHFLFSLQDLCPE 201 (328)
Q Consensus 133 ~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e-----~~i~~------~~~~~~~lv~H~p~P~~~~~~~ 201 (328)
.+. +.. ....+++..+.+++++|+|++++....+... .++.. .......+++|+| |....++.
T Consensus 68 ~~~---~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~p-p~~~~~d~ 141 (188)
T cd07392 68 LGL---LTS--AGLNLHGKVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAP-PYGTAVDR 141 (188)
T ss_pred HHh---hhc--CcEecCCCEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCC-CcCCcccc
Confidence 111 111 1124556788899999999988754333221 11211 0112234789999 97532221
Q ss_pred ccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCce-EECCEEEEec
Q 042652 202 KRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDA-VLDGIRYVQA 258 (328)
Q Consensus 202 ~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~-~~~g~~~v~~ 258 (328)
.. .....|++.+.++++++. +++++|||+|++.+. .++++.++|+
T Consensus 142 ~~------~~~~~g~~~l~~li~~~~------~~~~l~GH~H~~~~~~~~~~~~~~n~ 187 (188)
T cd07392 142 VS------GGFHVGSKAIRKFIEERQ------PLLCICGHIHESRGVDKIGNTLVVNP 187 (188)
T ss_pred cC------CCCccCCHHHHHHHHHhC------CcEEEEeccccccceeeeCCeEEecC
Confidence 10 122468999999998874 569999999999855 6888877764
No 5
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.87 E-value=4.5e-21 Score=174.03 Aligned_cols=210 Identities=16% Similarity=0.113 Sum_probs=133.6
Q ss_pred EEEEEeCCCCCCcc------------cHHHHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHHhcCCcEEEECCCC
Q 042652 53 RVFVLSDLHTDYSE------------NMTWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDRFQRVLFVPGNH 118 (328)
Q Consensus 53 ri~~iSDlH~~~~~------------~~~~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~~~~v~~V~GNH 118 (328)
||+++||+|++... .+++++.+.....++|+||++||+++.. ..++.+.+.++++..|+++|+|||
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHHhhcCCCEEEeCCCC
Confidence 69999999998532 1234555532234899999999999875 456777888888889999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCC---CCCc-------ccccCCccCCccee
Q 042652 119 DLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHES---FDRE-------KDISGIRILPLEMV 188 (328)
Q Consensus 119 D~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~---f~~e-------~~i~~~~~~~~~lv 188 (328)
|.... +...+ .......+.....+.+++++|+++++..... .-.+ ..+......+..++
T Consensus 81 D~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~~~~~~~~il~ 149 (240)
T cd07402 81 DDRAA-----MRAVF------PELPPAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALAEAPDKPTLVF 149 (240)
T ss_pred CCHHH-----HHHhh------ccccccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHHhCCCCCEEEE
Confidence 97521 11111 1110011122346778899999987633211 0001 11111112234588
Q ss_pred eecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEe-ccccChhhhh
Q 042652 189 IHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQ-APLAYPRERK 267 (328)
Q Consensus 189 ~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~-~~~gy~~~~~ 267 (328)
+|+| |......... .....+++.+.+.+++.. ++++++|||+|......++|+.+++ .+.||+..+.
T Consensus 150 ~H~p-p~~~~~~~~~------~~~~~~~~~~~~~l~~~~-----~v~~v~~GH~H~~~~~~~~g~~~~~~gs~~~~~~~~ 217 (240)
T cd07402 150 LHHP-PFPVGIAWMD------AIGLRNAEALAAVLARHP-----NVRAILCGHVHRPIDGSWGGIPLLTAPSTCHQFAPD 217 (240)
T ss_pred ECCC-CccCCchhhh------hhhCCCHHHHHHHHhcCC-----CeeEEEECCcCchHHeEECCEEEEEcCcceeeecCC
Confidence 9999 8653221100 012334566666666651 4789999999999999999999865 4778887631
Q ss_pred c----ccCCCCCCcceEEecCC
Q 042652 268 R----RMNGGENQLPYCVYSDG 285 (328)
Q Consensus 268 ~----~~~~~~g~~~~~l~~dg 285 (328)
. +....+||+-+.||.+|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
T cd07402 218 LDDFALDALAPGYRALSLHEDG 239 (240)
T ss_pred CCcccccccCCCCcEEEEecCC
Confidence 1 35557799999999876
No 6
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.85 E-value=1e-20 Score=170.40 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=122.2
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc---hhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCC
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY---DDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEEN 127 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~---~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~ 127 (328)
.+||+++||+|.+....+++++.+ ++.++|+||++||+++.+ +.+..+++.++++..|+++|+||||...
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~--~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l~~pv~~V~GNhD~~v----- 76 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLA--PETGADAIVLIGNLLPKAAKSEDYAAFFRILGEAHLPTFYVPGPQDAPL----- 76 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHH--hhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCceEEEcCCCChHH-----
Confidence 589999999998776666666655 457899999999999965 3466677778777889999999999531
Q ss_pred chhhHHHHHHHHHhc---ccccccccceEEEcC-EEEeccCCCCCCCCCC-ccccc---------------CCccCCcce
Q 042652 128 DFPDSLEKLNKLLDA---CRGLGVEINPVVIDG-LGIIPLFSWYHESFDR-EKDIS---------------GIRILPLEM 187 (328)
Q Consensus 128 ~~~~~~~~~~~l~~~---~~~l~v~~~~~~i~g-~~iiG~~~w~~~~f~~-e~~i~---------------~~~~~~~~l 187 (328)
...+.. .+.+. ....++++..+.++| ++|+|+++...+++.. |.++. ........+
T Consensus 77 --~~~l~~--~~~~~~~~p~~~~lh~~~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~~~~~~VL 152 (224)
T cd07388 77 --WEYLRE--AYNAELVHPEIRNVHETFAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWELKDYRKVF 152 (224)
T ss_pred --HHHHHH--HhcccccCccceecCCCeEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhCCCCCeEE
Confidence 111111 00000 012456777788855 8999999876554221 22210 011123458
Q ss_pred eeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec
Q 042652 188 VIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA 258 (328)
Q Consensus 188 v~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~ 258 (328)
++|+| |.... ..+.||+.++++|++++|+ +++|||+|... .++++|.++|+
T Consensus 153 v~H~P-P~g~g------------~~h~GS~alr~~I~~~~P~------l~i~GHih~~~-~~~g~t~vvNp 203 (224)
T cd07388 153 LFHTP-PYHKG------------LNEQGSHEVAHLIKTHNPL------VVLVGGKGQKH-ELLGASWVVVP 203 (224)
T ss_pred EECCC-CCCCC------------CCccCHHHHHHHHHHhCCC------EEEEcCCceeE-EEeCCEEEECC
Confidence 99999 98531 1378999999999999764 99999999544 47888888776
No 7
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.85 E-value=1.9e-20 Score=165.26 Aligned_cols=179 Identities=20% Similarity=0.184 Sum_probs=127.5
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEccccc--CCch--hHHHH--HHHHHhcCCcEEEECCCCCCCCC
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVA--EKYD--DFVLT--MSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~--~~~~--~~~~~--~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
.+||++++||+|.+.....++++.. ...++|+++++|||+ +-.+ ..... ++.+++...||++||||.|-...
T Consensus 2 ~~mkil~vtDlHg~~~~~~k~~~~~--~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 2 KKMKILAVTDLHGSEDSLKKLLNAA--ADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred CcceEEEEeccccchHHHHHHHHHH--hhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHHH
Confidence 4699999999999887656666655 456899999999999 5432 22222 56777788999999999886421
Q ss_pred CCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCc----------cC---Ccceeee
Q 042652 124 GEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIR----------IL---PLEMVIH 190 (328)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~----------~~---~~~lv~H 190 (328)
...+.+ ...+++++.+.++++.|+|.++-...+|.+..++.+.. .. ...+++|
T Consensus 80 ------------~~~l~~--~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~H 145 (226)
T COG2129 80 ------------IDVLKN--AGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTH 145 (226)
T ss_pred ------------HHHHHh--cccccccceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCcceEEEec
Confidence 222222 34567788999999999997665556665543332210 01 1168899
Q ss_pred cccCcccccccccccCCCCCC-CCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEEC-CEEEEec
Q 042652 191 FLFSLQDLCPEKRMLFYPNLP-KIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLD-GIRYVQA 258 (328)
Q Consensus 191 ~p~P~~~~~~~~~~~~~~~~~-~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~-g~~~v~~ 258 (328)
.| |.....+ .. .+ .+.||..+++.+++++|. +++|||+|++.+...- +|.++|+
T Consensus 146 aP-P~gt~~d-~~------~g~~hvGS~~vr~~ieefqP~------l~i~GHIHEs~G~d~iG~TivVNP 201 (226)
T COG2129 146 AP-PYGTLLD-TP------SGYVHVGSKAVRKLIEEFQPL------LGLHGHIHESRGIDKIGNTIVVNP 201 (226)
T ss_pred CC-CCCcccc-CC------CCccccchHHHHHHHHHhCCc------eEEEeeecccccccccCCeEEECC
Confidence 99 9987665 11 12 589999999999999764 9999999999988655 5555544
No 8
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.82 E-value=1.9e-19 Score=163.53 Aligned_cols=180 Identities=19% Similarity=0.282 Sum_probs=110.9
Q ss_pred EEEEeCCCCCC---------cc-cHHHHHHHhh----cCCCCCEEEEcccccCCc--hhHHHHHHHHHhcCCcEEEECCC
Q 042652 54 VFVLSDLHTDY---------SE-NMTWVKCLST----TRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDRFQRVLFVPGN 117 (328)
Q Consensus 54 i~~iSDlH~~~---------~~-~~~~l~~l~~----~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~~~~v~~V~GN 117 (328)
|+++||||++. .+ +.+.++++.. ...++|+||++||+++.. ......+++|+++..|+++|+||
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~~l~~~v~~V~GN 80 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWIDALPGTKVLLKGN 80 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHHhCCCCeEEEeCC
Confidence 57999999983 11 2344444432 234899999999999754 24456667787776789999999
Q ss_pred CCCCCCCCCCchhhHHHHHHH-HHhcccccccccceEEEcCEEEeccCCCCCCCCCC-----------ccc---------
Q 042652 118 HDLWCRGEENDFPDSLEKLNK-LLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDR-----------EKD--------- 176 (328)
Q Consensus 118 HD~~~~~~~~~~~~~~~~~~~-l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~-----------e~~--------- 176 (328)
||++... . + .+.. +.+....+. .+..+.++++.|+|+++|....... .+.
T Consensus 81 HD~~~~~----~-~---~~~~~l~~~~~~~~-~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 151 (232)
T cd07393 81 HDYWWGS----A-S---KLRKALEESRLALL-FNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERL 151 (232)
T ss_pred ccccCCC----H-H---HHHHHHHhcCeEEe-ccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHH
Confidence 9986422 1 1 1221 211111111 2677788999999998775311000 000
Q ss_pred ---ccCCcc----CCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCC---
Q 042652 177 ---ISGIRI----LPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSW--- 246 (328)
Q Consensus 177 ---i~~~~~----~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~--- 246 (328)
+....- .+..+++|+| |... ..++..+.+.+++. ++++++|||+|...
T Consensus 152 ~~~L~~~~~~~~~~~~i~~~H~p-~~~~---------------~~~~~~~~~~~~~~------~v~~vl~GH~H~~~~~~ 209 (232)
T cd07393 152 ELSLKAAKKREKEKIKIVMLHYP-PANE---------------NGDDSPISKLIEEY------GVDICVYGHLHGVGRDR 209 (232)
T ss_pred HHHHHHHHhCCCCCCEEEEECCC-CcCC---------------CCCHHHHHHHHHHc------CCCEEEECCCCCCcccc
Confidence 110000 1245788999 7631 12444555555553 47899999999875
Q ss_pred --ceEECCEEEEeccccChh
Q 042652 247 --DAVLDGIRYVQAPLAYPR 264 (328)
Q Consensus 247 --~~~~~g~~~v~~~~gy~~ 264 (328)
....+|+.|+++|.+|-+
T Consensus 210 ~~~~~~~gi~~~~~~~~~~~ 229 (232)
T cd07393 210 AINGERGGIRYQLVSADYLN 229 (232)
T ss_pred cccceECCEEEEEEcchhcC
Confidence 356999999998887654
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.77 E-value=1.1e-17 Score=155.10 Aligned_cols=201 Identities=18% Similarity=0.181 Sum_probs=125.4
Q ss_pred cEEEEEeCCCCCCcc-------------cHHHHHHHhhcCCCCCEEEEcccccCCc-----hhHHHHHHHHHhcCCcEEE
Q 042652 52 LRVFVLSDLHTDYSE-------------NMTWVKCLSTTRHKKDVLLVAGDVAEKY-----DDFVLTMSLLKDRFQRVLF 113 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~-------------~~~~l~~l~~~~~~~D~li~~GDi~~~~-----~~~~~~~~~l~~~~~~v~~ 113 (328)
.||+++||+|..... .++.++.+ +..++|+||++||+++.. +.+..+.+.++++..|+++
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i--~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~ 78 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEW--NRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHH 78 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHH--HcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEE
Confidence 489999999965421 02234445 456799999999999764 3466777888888899999
Q ss_pred ECCCCCCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCC---------------------
Q 042652 114 VPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFD--------------------- 172 (328)
Q Consensus 114 V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~--------------------- 172 (328)
|+||||...... .... .......+.....+..+|++++.+++.. .++.
T Consensus 79 v~GNHD~~~~~~-----~~~~-----~~~~~~~~~~yysf~~~~~~~i~lds~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (267)
T cd07396 79 VLGNHDLYNPSR-----EYLL-----LYTLLGLGAPYYSFSPGGIRFIVLDGYD-ISALGRPEDTPKAENADDNSNLGLY 147 (267)
T ss_pred ecCccccccccH-----hhhh-----cccccCCCCceEEEecCCcEEEEEeCCc-cccccCCCCChhhhhHHHhchhhhh
Confidence 999999875321 1110 0001111222245667889998887632 1100
Q ss_pred --------CcccccC--Ccc------------CCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhccc
Q 042652 173 --------REKDISG--IRI------------LPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAM 230 (328)
Q Consensus 173 --------~e~~i~~--~~~------------~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~ 230 (328)
..+.+.. +.| .+..+++||| |....... .......+.+.++++++.
T Consensus 148 ~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp-~~~~~~~~--------~~~~~~~~~~~~ll~~~~--- 215 (267)
T cd07396 148 LSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFP-LHPESTSP--------HGLLWNHEEVLSILRAYG--- 215 (267)
T ss_pred ccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEecc-CCCCCCCc--------cccccCHHHHHHHHHhCC---
Confidence 0111111 111 1234788999 75432210 011234556666666532
Q ss_pred CCCccEEEEcccccCCceEECCEEEEe-ccccChhhhhcccCCCCCCcceEEecCC
Q 042652 231 GSTSACHVFGHTHFSWDAVLDGIRYVQ-APLAYPRERKRRMNGGENQLPYCVYSDG 285 (328)
Q Consensus 231 ~~~v~~~i~GH~H~~~~~~~~g~~~v~-~~~gy~~~~~~~~~~~~g~~~~~l~~dg 285 (328)
+++++++||+|.......+|+.+++ ++++++ . ...+.|..+.||.|.
T Consensus 216 --~V~~v~~GH~H~~~~~~~~gi~~~~~~a~~~~-~-----~~~~~~~~~~~~~~~ 263 (267)
T cd07396 216 --CVKACISGHDHEGGYAQRHGIHFLTLEGMVET-P-----PESNAFGVVIVYEDR 263 (267)
T ss_pred --CEEEEEcCCcCCCCccccCCeeEEEechhhcC-C-----CCCCceEEEEEeCCc
Confidence 5889999999999999999998876 466776 2 236789999999875
No 10
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.76 E-value=7.2e-17 Score=148.84 Aligned_cols=210 Identities=15% Similarity=0.084 Sum_probs=122.1
Q ss_pred CCcEEEEEeCCCCCCcc-c---------------HHHHHHHhhcCCCCCEEEEcccccCCch-------hHHHHHHHHHh
Q 042652 50 SGLRVFVLSDLHTDYSE-N---------------MTWVKCLSTTRHKKDVLLVAGDVAEKYD-------DFVLTMSLLKD 106 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~-~---------------~~~l~~l~~~~~~~D~li~~GDi~~~~~-------~~~~~~~~l~~ 106 (328)
...+|+++||+|.+... . ++.++.+.+...++|+||++||+++... .+..+.+.+++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 45899999999998521 1 1233444223448999999999998642 23455566666
Q ss_pred c--CCcEEEECCCCCCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCC--CC-CC--CCc-----
Q 042652 107 R--FQRVLFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWY--HE-SF--DRE----- 174 (328)
Q Consensus 107 ~--~~~v~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~--~~-~f--~~e----- 174 (328)
. ..|+++++||||...... ...+..+. + .++.....+..++++|+.+++-. +. .. ..+
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~----~~~~~~f~---~---~~g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ql~W 152 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPT----EESIKDYR---D---VFGDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQDVW 152 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCC----hhHHHHHH---H---HhCCcceEEEECCEEEEEeccccccCccccccchHHHHHH
Confidence 5 579999999999864321 11222221 1 12222234567899999887621 11 10 000
Q ss_pred --ccccCCc---cCCcceeeecccCcccccccccccCCCCCCC-CCCcHHHHHHHHHhhcccCCCccEEEEcccccCCce
Q 042652 175 --KDISGIR---ILPLEMVIHFLFSLQDLCPEKRMLFYPNLPK-IIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDA 248 (328)
Q Consensus 175 --~~i~~~~---~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~-~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~ 248 (328)
+.+...+ .....+++|+| |......... ..+.. ......+.+++++. ++++++|||+|.....
T Consensus 153 L~~~L~~~~~~~~~~~iv~~H~P-~~~~~~~~~~----~~~~~~~~~~~~l~~ll~~~------~V~~v~~GH~H~~~~~ 221 (262)
T cd07395 153 LEEQLEIAKESDCKHVIVFQHIP-WFLEDPDEED----SYFNIPKSVRKPLLDKFKKA------GVKAVFSGHYHRNAGG 221 (262)
T ss_pred HHHHHHHHHhccCCcEEEEECcC-CccCCCCCCc----ccCCcCHHHHHHHHHHHHhc------CceEEEECccccCCce
Confidence 1111111 12334788999 7532111000 00010 01122333444432 5899999999999999
Q ss_pred EECCEEEEe-ccccChhhhhcccCCCCCCcceEEecCC
Q 042652 249 VLDGIRYVQ-APLAYPRERKRRMNGGENQLPYCVYSDG 285 (328)
Q Consensus 249 ~~~g~~~v~-~~~gy~~~~~~~~~~~~g~~~~~l~~dg 285 (328)
.++|+.++. ++.|++.. ...+||+.+.+++|+
T Consensus 222 ~~~g~~~~~~~~~~~~~~-----~~~~g~~~~~v~~~~ 254 (262)
T cd07395 222 RYGGLEMVVTSAIGAQLG-----NDKSGLRIVKVTEDK 254 (262)
T ss_pred EECCEEEEEcCceecccC-----CCCCCcEEEEECCCc
Confidence 999997664 56676542 237899999998776
No 11
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.74 E-value=9.2e-17 Score=145.37 Aligned_cols=192 Identities=19% Similarity=0.227 Sum_probs=115.3
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCchhh
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDFPD 131 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~ 131 (328)
+||+++||+|.+... ...+.+ +..++|+|+++||+++.. ..+++.+.++..|+++|+||||.+..... ..
T Consensus 1 ~rIa~isDiHg~~~~--~~~~~l--~~~~pD~Vl~~GDi~~~~---~~~~~~l~~l~~p~~~V~GNHD~~~~~~~---~~ 70 (238)
T cd07397 1 LRIAIVGDVHGQWDL--EDIKAL--HLLQPDLVLFVGDFGNES---VQLVRAISSLPLPKAVILGNHDAWYDATF---RK 70 (238)
T ss_pred CEEEEEecCCCCchH--HHHHHH--hccCCCEEEECCCCCcCh---HHHHHHHHhCCCCeEEEcCCCcccccccc---cc
Confidence 589999999987643 123344 466899999999998754 45667777777899999999998775421 00
Q ss_pred HHHHHHHHHhcccccc---cccceEEEc--CEEEeccCCCCCC-C--CCC-c--cc--c-----------cCC-ccC---
Q 042652 132 SLEKLNKLLDACRGLG---VEINPVVID--GLGIIPLFSWYHE-S--FDR-E--KD--I-----------SGI-RIL--- 183 (328)
Q Consensus 132 ~~~~~~~l~~~~~~l~---v~~~~~~i~--g~~iiG~~~w~~~-~--f~~-e--~~--i-----------~~~-~~~--- 183 (328)
+++.+.+....++ +....+.+. ++.++|.-+|.-. . +.+ + .. + +.. ...
T Consensus 71 ---k~~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~ 147 (238)
T cd07397 71 ---KGDRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDL 147 (238)
T ss_pred ---hHHHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCC
Confidence 1222221112222 122333343 5778888777531 1 111 0 00 1 111 111
Q ss_pred CcceeeecccCccccccccc--ccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCC--ce--------EEC
Q 042652 184 PLEMVIHFLFSLQDLCPEKR--MLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSW--DA--------VLD 251 (328)
Q Consensus 184 ~~~lv~H~p~P~~~~~~~~~--~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~--~~--------~~~ 251 (328)
+..+++|.+ |......... -.+|...+...|+..|++.|++++++ ..+++++|||+|.+. +. ..+
T Consensus 148 ~~VliaH~~-~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~--~~~~l~~fGH~H~~l~~~~~~r~~~~~~~~ 224 (238)
T cd07397 148 PLILLAHNG-PSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQG--RQVPLVVFGHMHHRLRRGKGLRNMIAVDRE 224 (238)
T ss_pred CeEEEeCcC-CcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhcc--CCCCEEEeCCccCcccccccccceeeecCC
Confidence 123788999 8765321100 01233335678999999999988742 247899999999983 32 237
Q ss_pred CEEEEecc
Q 042652 252 GIRYVQAP 259 (328)
Q Consensus 252 g~~~v~~~ 259 (328)
||.|+|++
T Consensus 225 gt~y~N~a 232 (238)
T cd07397 225 GTVYLNAA 232 (238)
T ss_pred CeEEEecc
Confidence 88887764
No 12
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.73 E-value=6.3e-17 Score=134.67 Aligned_cols=127 Identities=26% Similarity=0.342 Sum_probs=91.7
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHHhcCCc-EEEECCCCCCCCCCCCCch
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDRFQR-VLFVPGNHDLWCRGEENDF 129 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~~~~-v~~V~GNHD~~~~~~~~~~ 129 (328)
||+++||+|.... .+ +..++|+||++||+++.. ++++.++++++++..+ +++|+||||.+..
T Consensus 1 ~i~~isD~H~~~~-------~~--~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~~~~~~~v~GNHD~~~~------ 65 (135)
T cd07379 1 RFVCISDTHSRHR-------TI--SIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLPHPHKIVIAGNHDLTLD------ 65 (135)
T ss_pred CEEEEeCCCCCCC-------cC--cCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCCCCeEEEEECCCCCcCC------
Confidence 5899999998765 12 456899999999999865 4566788888887555 6889999997521
Q ss_pred hhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCC
Q 042652 130 PDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPN 209 (328)
Q Consensus 130 ~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~ 209 (328)
.++. ..+++|.| |.... .+..
T Consensus 66 -------------------------~~~~--------------------------~ilv~H~~-p~~~~-------~~~~ 86 (135)
T cd07379 66 -------------------------PEDT--------------------------DILVTHGP-PYGHL-------DLVS 86 (135)
T ss_pred -------------------------CCCC--------------------------EEEEECCC-CCcCc-------cccc
Confidence 0111 12678888 86421 1111
Q ss_pred CCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCce-----EECCEEEEecc
Q 042652 210 LPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDA-----VLDGIRYVQAP 259 (328)
Q Consensus 210 ~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~-----~~~g~~~v~~~ 259 (328)
.....|++.+.+.+++.. +++++|||+|.+... ++++|.++|++
T Consensus 87 ~~~~~g~~~~~~~~~~~~------~~~~i~GH~H~~~~~~~~~~~~~~t~~in~~ 135 (135)
T cd07379 87 SGQRVGCEELLNRVQRVR------PKLHVFGHIHEGYGAERVLDTDGETLFVNAS 135 (135)
T ss_pred cCcccCCHHHHHHHHHHC------CcEEEEcCcCCcCceeEecccCCCEEEEeCC
Confidence 234678998888888765 569999999999855 46888888864
No 13
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.73 E-value=6.5e-17 Score=150.23 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=62.1
Q ss_pred ccceeeeceeecCCcccCCCCCCCcEEEEEeCCCCCCccc----HHHHHHHhhcCCCCCEEEEcccccCC--chhHHHHH
Q 042652 28 KYTTTRRPEILTSSAAASSTSASGLRVFVLSDLHTDYSEN----MTWVKCLSTTRHKKDVLLVAGDVAEK--YDDFVLTM 101 (328)
Q Consensus 28 ~~~~v~~~~i~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~----~~~l~~l~~~~~~~D~li~~GDi~~~--~~~~~~~~ 101 (328)
...+|++++|.. +| +..++|||+++||+|.+.... +++++.+ +..++|+|+++||+.+. ..+...+.
T Consensus 31 ~~~~v~~~~i~~--~~---~~~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i--~~~~pDlVli~GD~~d~~~~~~~~~~~ 103 (271)
T PRK11340 31 GWFELIRHRLAF--FK---DNAAPFKILFLADLHYSRFVPLSLISDAIALG--IEQKPDLILLGGDYVLFDMPLNFSAFS 103 (271)
T ss_pred ceEEEEEEEccC--CC---CCCCCcEEEEEcccCCCCcCCHHHHHHHHHHH--HhcCCCEEEEccCcCCCCccccHHHHH
Confidence 345678888862 33 333679999999999974322 3344545 57799999999999983 23344455
Q ss_pred HHHHhc--CCcEEEECCCCCCCCC
Q 042652 102 SLLKDR--FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 102 ~~l~~~--~~~v~~V~GNHD~~~~ 123 (328)
+.|+++ ..|+|+|+||||++.+
T Consensus 104 ~~L~~L~~~~pv~~V~GNHD~~~~ 127 (271)
T PRK11340 104 DVLSPLAECAPTFACFGNHDRPVG 127 (271)
T ss_pred HHHHHHhhcCCEEEecCCCCcccC
Confidence 555544 3689999999998754
No 14
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.66 E-value=1.3e-15 Score=134.46 Aligned_cols=181 Identities=17% Similarity=0.158 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc---hhHH--------------------------HHHH
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY---DDFV--------------------------LTMS 102 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~---~~~~--------------------------~~~~ 102 (328)
-+|+.+||+|.++....++++.+. ...+|+|+++||+.... ++++ .+++
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~--e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~ 83 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIP--EKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFR 83 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHH--HHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhcc--ccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHH
Confidence 579999999999987777887774 45899999999997653 3455 7788
Q ss_pred HHHhcCCcEEEECCCCCCCCCCCCCchhhHHHHHHHHHh-cccc---cccccceEEEcC-EEEeccCCC-CCCCCCCccc
Q 042652 103 LLKDRFQRVLFVPGNHDLWCRGEENDFPDSLEKLNKLLD-ACRG---LGVEINPVVIDG-LGIIPLFSW-YHESFDREKD 176 (328)
Q Consensus 103 ~l~~~~~~v~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~-~~~~---l~v~~~~~~i~g-~~iiG~~~w-~~~~f~~e~~ 176 (328)
.|..+..|+++||||||-+.. ..++...+ .... .+++...+..+| +-++|.++- .+.+...+..
T Consensus 84 ~L~~~~~p~~~vPG~~Dap~~----------~~lr~a~~~e~v~p~~~~vH~sf~~~~g~y~v~G~GGeI~~~~~~~~~~ 153 (255)
T PF14582_consen 84 ILGELGVPVFVVPGNMDAPER----------FFLREAYNAEIVTPHIHNVHESFFFWKGEYLVAGMGGEITDDQREEEFK 153 (255)
T ss_dssp HHHCC-SEEEEE--TTS-SHH----------HHHHHHHHCCCC-TTEEE-CTCEEEETTTEEEEEE-SEEESSS-BCSSS
T ss_pred HHHhcCCcEEEecCCCCchHH----------HHHHHHhccceeccceeeeeeeecccCCcEEEEecCccccCCCcccccc
Confidence 888889999999999998632 12222222 1111 234556667776 888998873 3333222111
Q ss_pred --------------ccCCccCCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEccc
Q 042652 177 --------------ISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHT 242 (328)
Q Consensus 177 --------------i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~ 242 (328)
+...+-.+..+++|.| |. . . .-..+.||+.++++|++++|. +++|||+
T Consensus 154 LrYP~weaey~lk~l~elk~~r~IlLfhtp-Pd---~-~-------kg~~h~GS~~V~dlIk~~~P~------ivl~Ghi 215 (255)
T PF14582_consen 154 LRYPAWEAEYSLKFLRELKDYRKILLFHTP-PD---L-H-------KGLIHVGSAAVRDLIKTYNPD------IVLCGHI 215 (255)
T ss_dssp -EEEHHHHHHHHGGGGGCTSSEEEEEESS--BT---B-C-------TCTBTTSBHHHHHHHHHH--S------EEEE-SS
T ss_pred ccchHHHHHHHHHHHHhcccccEEEEEecC-Cc---c-C-------CCcccccHHHHHHHHHhcCCc------EEEeccc
Confidence 1111111334778999 81 1 1 114689999999999999764 9999999
Q ss_pred ccCCce-EECCEEEEec-cccC
Q 042652 243 HFSWDA-VLDGIRYVQA-PLAY 262 (328)
Q Consensus 243 H~~~~~-~~~g~~~v~~-~~gy 262 (328)
|...+. .++.|.+|++ ++.|
T Consensus 216 he~~~~e~lG~TlVVNPGsL~~ 237 (255)
T PF14582_consen 216 HESHGKESLGKTLVVNPGSLAE 237 (255)
T ss_dssp S-EE--EEETTEEEEE--BGGG
T ss_pred ccchhhHHhCCEEEecCccccc
Confidence 999965 5677777665 3443
No 15
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.64 E-value=2.7e-15 Score=125.73 Aligned_cols=123 Identities=20% Similarity=0.311 Sum_probs=85.4
Q ss_pred EEEEeCCCCCCcccH----H------HHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHHhcCC---cEEEECCCC
Q 042652 54 VFVLSDLHTDYSENM----T------WVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDRFQ---RVLFVPGNH 118 (328)
Q Consensus 54 i~~iSDlH~~~~~~~----~------~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~~~---~v~~V~GNH 118 (328)
|+++||+|++..... . .++.+ +..++|+|+++||+++.. +++..+.++++++.. |+++|+|||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~GNH 78 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEI--KALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPLEPVLVVPGNH 78 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHH--hccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccCCcEEEeCCCC
Confidence 689999999764321 1 22333 567899999999999975 355666677776644 999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccc
Q 042652 119 DLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDL 198 (328)
Q Consensus 119 D~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~ 198 (328)
|. .+++||| |....
T Consensus 79 D~-----------------------------------------------------------------iv~~Hhp-~~~~~ 92 (144)
T cd07400 79 DV-----------------------------------------------------------------IVVLHHP-LVPPP 92 (144)
T ss_pred eE-----------------------------------------------------------------EEEecCC-CCCCC
Confidence 95 2788999 86532
Q ss_pred cccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceE----ECCEEEEec
Q 042652 199 CPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAV----LDGIRYVQA 258 (328)
Q Consensus 199 ~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~----~~g~~~v~~ 258 (328)
.... ....+.+.+.+.+++. ++++++|||+|...... .+++.++++
T Consensus 93 ~~~~--------~~~~~~~~~~~~l~~~------~~~~~l~GH~H~~~~~~~~~~~~~~~~~~a 142 (144)
T cd07400 93 GSGR--------ERLLDAGDALKLLAEA------GVDLVLHGHKHVPYVGNISNAGGGLVVIGA 142 (144)
T ss_pred cccc--------ccCCCHHHHHHHHHHc------CCCEEEECCCCCcCeeeccCCCCCEEEEec
Confidence 2111 1122566666666664 47899999999999877 555555543
No 16
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.63 E-value=7.8e-15 Score=125.29 Aligned_cols=150 Identities=21% Similarity=0.243 Sum_probs=94.3
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCchhh
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDFPD 131 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~ 131 (328)
|||+++||+|......+..++.++ ...++|.|+++||++. ..+++.+++...|+++|+||||.....
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~-~~~~~d~ii~~GD~~~-----~~~~~~l~~~~~~~~~V~GN~D~~~~~------- 67 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFN-LESNVDLVIHAGDLTS-----PFVLKEFEDLAAKVIAVRGNNDGERDE------- 67 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHh-hccCCCEEEEcCCCCC-----HHHHHHHHHhCCceEEEccCCCchhhh-------
Confidence 799999999987654444455452 2238999999999983 346677777777899999999974210
Q ss_pred HHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCCCC
Q 042652 132 SLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLP 211 (328)
Q Consensus 132 ~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~ 211 (328)
. .....++++|.++ +++|.. +.. +
T Consensus 68 ----------~-----~~~~~~~~~g~~i--------------------------~l~Hg~-~~~-----------~--- 91 (158)
T TIGR00040 68 ----------L-----PEEEIFEAEGIDF--------------------------GLVHGD-LVY-----------P--- 91 (158)
T ss_pred ----------C-----CcceEEEECCEEE--------------------------EEEeCc-ccc-----------c---
Confidence 0 1123566777766 355554 310 0
Q ss_pred CCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cccChhhhhcccCCCCCCcceEEe
Q 042652 212 KIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PLAYPRERKRRMNGGENQLPYCVY 282 (328)
Q Consensus 212 ~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~gy~~~~~~~~~~~~g~~~~~l~ 282 (328)
....+. ++.+... .++++++|||+|.+.....+++.++|+ +++-++. ...++|..+.+.
T Consensus 92 -~~~~~~----l~~~~~~--~~~d~vi~GHtH~~~~~~~~~~~~iNpGs~~~~~~-----~~~~~~~il~~~ 151 (158)
T TIGR00040 92 -RGDLLV----LEYLAKE--LGVDVLIFGHTHIPVAEELRGILLINPGSLTGPRN-----GNTPSYAILDVD 151 (158)
T ss_pred -CCCHHH----HHHHHhc--cCCCEEEECCCCCCccEEECCEEEEECCccccccC-----CCCCeEEEEEec
Confidence 001111 2222111 147899999999999999999988876 3443331 113466666654
No 17
>PRK09453 phosphodiesterase; Provisional
Probab=99.63 E-value=4.9e-15 Score=129.56 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCch--------hHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYD--------DFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~--------~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
|||+++||+|.+....+++++.+ ...++|.|+++||+++.+. ...++++.+++...++++|+||||.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~--~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELF--AQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHH--HhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcCCceEEEccCCcch
Confidence 79999999998765545566655 4578999999999997532 24567788877777899999999975
No 18
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.62 E-value=6.6e-15 Score=125.20 Aligned_cols=181 Identities=21% Similarity=0.314 Sum_probs=119.1
Q ss_pred cEEEEEeCCCCCCcc--------------cHHHHHHHhhcCCCCCEEEEcccccCC--chhHHHHHHHHHhcCCcEEEEC
Q 042652 52 LRVFVLSDLHTDYSE--------------NMTWVKCLSTTRHKKDVLLVAGDVAEK--YDDFVLTMSLLKDRFQRVLFVP 115 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~--------------~~~~l~~l~~~~~~~D~li~~GDi~~~--~~~~~~~~~~l~~~~~~v~~V~ 115 (328)
|||+.|||+|+.... .+++-+.....-..-|+|++.|||+-. .++.+.-++++..+....+++.
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~LPG~K~m~r 80 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAEEDLRFIGDLPGTKYMIR 80 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhcCChhhEEEecccchhheechhhhhhhhhhhcCCCcEEEEe
Confidence 799999999996531 122222222233456999999999875 3566777899999988899999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcc-----------cccCCc---
Q 042652 116 GNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREK-----------DISGIR--- 181 (328)
Q Consensus 116 GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~-----------~i~~~~--- 181 (328)
||||+|.. +..++... ....+...++-+++..+.|+|+.+|.+.+++.|. ++.+.+
T Consensus 81 GNHDYWw~--------s~skl~n~--lp~~l~~~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa 150 (230)
T COG1768 81 GNHDYWWS--------SISKLNNA--LPPILFYLNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSA 150 (230)
T ss_pred cCCccccc--------hHHHHHhh--cCchHhhhccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHH
Confidence 99999963 33344321 1122344577788888999999999887664421 111111
Q ss_pred ---cC----CcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCC-----ceE
Q 042652 182 ---IL----PLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSW-----DAV 249 (328)
Q Consensus 182 ---~~----~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~-----~~~ 249 (328)
.+ ...+++|.| |.... ..+++ +.+.+++.. ++.+++||+|... ...
T Consensus 151 ~a~l~k~~~~fivM~HYP-P~s~~--------------~t~~~-~sevlee~r------v~~~lyGHlHgv~~p~~~~s~ 208 (230)
T COG1768 151 DAALPKGVSKFIVMTHYP-PFSDD--------------GTPGP-FSEVLEEGR------VSKCLYGHLHGVPRPNIGFSN 208 (230)
T ss_pred HHhcccCcCeEEEEEecC-CCCCC--------------CCCcc-hHHHHhhcc------eeeEEeeeccCCCCCCCCccc
Confidence 11 123778999 87421 11232 567788754 6799999999754 345
Q ss_pred ECCEEEEeccccChh
Q 042652 250 LDGIRYVQAPLAYPR 264 (328)
Q Consensus 250 ~~g~~~v~~~~gy~~ 264 (328)
++|+.|.-.+.-|..
T Consensus 209 v~Gi~y~LvaaDyv~ 223 (230)
T COG1768 209 VRGIEYMLVAADYVE 223 (230)
T ss_pred ccCceEEEEecccee
Confidence 678888777766654
No 19
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.61 E-value=1.1e-14 Score=134.35 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=100.8
Q ss_pred EEEEeCCCCCCcccH-------HHHHHHhhcCCCCCEEEEcccccCCch-----------hHHHHHHHHHhc----CCcE
Q 042652 54 VFVLSDLHTDYSENM-------TWVKCLSTTRHKKDVLLVAGDVAEKYD-----------DFVLTMSLLKDR----FQRV 111 (328)
Q Consensus 54 i~~iSDlH~~~~~~~-------~~l~~l~~~~~~~D~li~~GDi~~~~~-----------~~~~~~~~l~~~----~~~v 111 (328)
|+++||+|++....+ .+++.+ +..++|++|++||+++... ....+++.+... ..|+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i--~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFI--DVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKW 79 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHH--HhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceE
Confidence 789999999764221 134445 6778999999999998531 122444544432 3799
Q ss_pred EEECCCCCCCCCCCCCchhhHHHHHHHHHhcccccccccceE----EEcCEEEeccCCCCC----CCCCCcccccC----
Q 042652 112 LFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVEINPV----VIDGLGIIPLFSWYH----ESFDREKDISG---- 179 (328)
Q Consensus 112 ~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~----~i~g~~iiG~~~w~~----~~f~~e~~i~~---- 179 (328)
+.|+||||.+.....+...+...++. .........+ ..+++.|+|+++... ..+...+.+..
T Consensus 80 ~~v~GNHD~~~~~~~~~~~~~~~~y~------~~~~~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 80 FDIRGNHDLFNIPSLDSENNYYRKYS------ATGRDGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred EEeCCCCCcCCCCCccchhhHHHHhh------eecCCCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 99999999975432111111111111 1111011111 138899999988542 11110111111
Q ss_pred --------Cc-cCCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCc---
Q 042652 180 --------IR-ILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWD--- 247 (328)
Q Consensus 180 --------~~-~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~--- 247 (328)
.. .....+++||| +.. ..+. ....+.. +.++|++. ++++++|||+|....
T Consensus 154 wL~~~L~~~~~~~~~IV~~HhP-~~~-~~~~---------~~~~~~~-~~~ll~~~------~v~~vl~GH~H~~~~~~p 215 (256)
T cd07401 154 RLEKELEKSTNSNYTIWFGHYP-TST-IISP---------SAKSSSK-FKDLLKKY------NVTAYLCGHLHPLGGLEP 215 (256)
T ss_pred HHHHHHHhcccCCeEEEEEccc-chh-ccCC---------CcchhHH-HHHHHHhc------CCcEEEeCCccCCCccee
Confidence 00 11234788998 632 1110 1111222 55566554 488999999999887
Q ss_pred eEECCE--EEEeccccCh
Q 042652 248 AVLDGI--RYVQAPLAYP 263 (328)
Q Consensus 248 ~~~~g~--~~v~~~~gy~ 263 (328)
.-.+|+ -++++|.-|-
T Consensus 216 ~h~~~~~~~~~~~p~~~~ 233 (256)
T cd07401 216 VHYAGHPYALITNPKPSL 233 (256)
T ss_pred eeecCCceEEEeCCCChH
Confidence 556776 3456666554
No 20
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.60 E-value=5e-15 Score=124.94 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=90.8
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCchhh
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDFPD 131 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~ 131 (328)
|||+++||+|.+....+++++.+ .++|.|+++||+++. .++++.+++. |+++|+||||.+....
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~----~~~d~vi~~GDi~~~----~~~~~~~~~~--~~~~v~GNHD~~~~~~------ 64 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI----NEPDFVIILGDIFDP----EEVLELLRDI--PVYVVRGNHDNWAFPN------ 64 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH----TTESEEEEES-SCSH----HHHHHHHHHH--EEEEE--CCHSTHHHS------
T ss_pred CEEEEEeCCCCChhHHHHHHHHh----cCCCEEEECCCchhH----HHHHHHHhcC--CEEEEeCCcccccchh------
Confidence 89999999999877656677665 359999999999883 5667777666 9999999999642100
Q ss_pred HHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCCCC
Q 042652 132 SLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLP 211 (328)
Q Consensus 132 ~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~ 211 (328)
......-.......+++.. .+++|.. |..
T Consensus 65 ---------~~~~~~~~~~~~~~~~~~~--------------------------i~~~H~~-~~~--------------- 93 (156)
T PF12850_consen 65 ---------ENDEEYLLDALRLTIDGFK--------------------------ILLSHGH-PYD--------------- 93 (156)
T ss_dssp ---------EECTCSSHSEEEEEETTEE--------------------------EEEESST-SSS---------------
T ss_pred ---------hhhccccccceeeeecCCe--------------------------EEEECCC-Ccc---------------
Confidence 0000000001112222222 2577777 652
Q ss_pred CCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cccChhhhhcccCCCCCCcceEE
Q 042652 212 KIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PLAYPRERKRRMNGGENQLPYCV 281 (328)
Q Consensus 212 ~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~gy~~~~~~~~~~~~g~~~~~l 281 (328)
...+.+.+.+.+... ++++++|||+|.+.....+++.++++ +++.+.. ....+|..+.+
T Consensus 94 ~~~~~~~~~~~~~~~------~~~~~~~GH~H~~~~~~~~~~~~~~~Gs~~~~~~-----~~~~~~~i~~~ 153 (156)
T PF12850_consen 94 VQWDPAELREILSRE------NVDLVLHGHTHRPQVFKIGGIHVINPGSIGGPRH-----GDQSGYAILDI 153 (156)
T ss_dssp STTTHHHHHHHHHHT------TSSEEEESSSSSEEEEEETTEEEEEE-GSSS-SS-----SSSEEEEEEEE
T ss_pred cccChhhhhhhhccc------CCCEEEcCCcccceEEEECCEEEEECCcCCCCCC-----CCCCEEEEEEE
Confidence 112344444444432 57899999999999999999999876 4454331 11445655544
No 21
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.58 E-value=3.4e-14 Score=120.53 Aligned_cols=146 Identities=22% Similarity=0.152 Sum_probs=91.3
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCchhhH
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDFPDS 132 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~~~~ 132 (328)
||+++||+|......+++++.+ + ++|.|+++||+++...... + ....++++|+||||.....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~--~--~~d~ii~~GD~~~~~~~~~-----~-~~~~~~~~V~GNhD~~~~~-------- 62 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELF--G--DVDLIIHAGDVLYPGPLNE-----L-ELKAPVIAVRGNCDGEVDF-------- 62 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHh--c--CCCEEEECCccccccccch-----h-hcCCcEEEEeCCCCCcCCc--------
Confidence 5899999998875445555554 2 2999999999998763211 2 3356899999999986420
Q ss_pred HHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCCCCC
Q 042652 133 LEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPK 212 (328)
Q Consensus 133 ~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~ 212 (328)
..+ .....+.++|.++ +++|.+ +....
T Consensus 63 -----------~~~-p~~~~~~~~g~~i--------------------------~v~Hg~-~~~~~-------------- 89 (155)
T cd00841 63 -----------PIL-PEEAVLEIGGKRI--------------------------FLTHGH-LYGVK-------------- 89 (155)
T ss_pred -----------ccC-CceEEEEECCEEE--------------------------EEECCc-ccccc--------------
Confidence 000 0112345566655 456666 43210
Q ss_pred CCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cccChhhhhcccCCCCCCcceEEe
Q 042652 213 IIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PLAYPRERKRRMNGGENQLPYCVY 282 (328)
Q Consensus 213 ~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~gy~~~~~~~~~~~~g~~~~~l~ 282 (328)
..... .+.++.. ++++++|||+|.+.....+++.++|+ +.|.++. ...++|..+.+-
T Consensus 90 -~~~~~-~~~~~~~------~~d~vi~GHtH~~~~~~~~~~~~inpGs~~~~~~-----~~~~~~~i~~~~ 147 (155)
T cd00841 90 -NGLDR-LYLAKEG------GADVVLYGHTHIPVIEKIGGVLLLNPGSLSLPRG-----GGPPTYAILEID 147 (155)
T ss_pred -cchhh-hhhhhhc------CCCEEEECcccCCccEEECCEEEEeCCCccCcCC-----CCCCeEEEEEec
Confidence 00111 1222222 47899999999999999999999887 5666542 224466666654
No 22
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.57 E-value=1.2e-13 Score=120.63 Aligned_cols=135 Identities=21% Similarity=0.167 Sum_probs=87.0
Q ss_pred EEEEEeCCCCCCcc--c-HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCch
Q 042652 53 RVFVLSDLHTDYSE--N-MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEENDF 129 (328)
Q Consensus 53 ri~~iSDlH~~~~~--~-~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~~ 129 (328)
+|+++||+|++... . ..+++.+ +..++|.++++||+++ ..+++.+++...++++|.||||....-
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~--~~~~~d~iih~GDi~~-----~~~~~~l~~~~~~~~~V~GN~D~~~~l----- 68 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLL--VPGKIQHVLCTGNLCS-----KETYDYLKTIAPDVHIVRGDFDENLNY----- 68 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHh--ccCCCCEEEECCCCCC-----HHHHHHHHhhCCceEEEECCCCccccC-----
Confidence 58999999975532 1 2344444 3467999999999976 345566666545799999999975210
Q ss_pred hhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCC
Q 042652 130 PDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPN 209 (328)
Q Consensus 130 ~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~ 209 (328)
.....++++|.++. ++|.- +..
T Consensus 69 ------------------p~~~~~~~~g~~i~--------------------------l~HG~-~~~------------- 90 (178)
T cd07394 69 ------------------PETKVITVGQFKIG--------------------------LIHGH-QVV------------- 90 (178)
T ss_pred ------------------CCcEEEEECCEEEE--------------------------EEECC-cCC-------------
Confidence 01124677888874 44443 221
Q ss_pred CCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cccChhh
Q 042652 210 LPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PLAYPRE 265 (328)
Q Consensus 210 ~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~gy~~~ 265 (328)
.....+.+....++. ++++++|||||.+.....+|+.++|+ |.|.++.
T Consensus 91 --~~~~~~~~~~~~~~~------~~dvii~GHTH~p~~~~~~g~~viNPGSv~~~~~ 139 (178)
T cd07394 91 --PWGDPDSLAALQRQL------DVDILISGHTHKFEAFEHEGKFFINPGSATGAFS 139 (178)
T ss_pred --CCCCHHHHHHHHHhc------CCCEEEECCCCcceEEEECCEEEEECCCCCCCCC
Confidence 011122222222221 47899999999999999999999987 6676653
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.54 E-value=8e-14 Score=125.00 Aligned_cols=72 Identities=33% Similarity=0.418 Sum_probs=54.6
Q ss_pred CcEEEEEeCCCCCCccc----HHHHHHHhhcCCCCCEEEEcccccCCchhH-HHHHHHHHhc--CCcEEEECCCCCCCCC
Q 042652 51 GLRVFVLSDLHTDYSEN----MTWVKCLSTTRHKKDVLLVAGDVAEKYDDF-VLTMSLLKDR--FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~----~~~l~~l~~~~~~~D~li~~GDi~~~~~~~-~~~~~~l~~~--~~~v~~V~GNHD~~~~ 123 (328)
+|||+++||+|.+.... +++++.+ ++.++|+|+++||+++..... ..+.+.++++ ..|+++++||||++..
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~--~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v~GNHD~~~~ 78 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKI--NALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAVLGNHDYYSG 78 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHH--hccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEECCCcccccC
Confidence 48999999999986533 3455555 567899999999999976433 3556666654 4689999999999765
Q ss_pred C
Q 042652 124 G 124 (328)
Q Consensus 124 ~ 124 (328)
.
T Consensus 79 ~ 79 (223)
T cd07385 79 D 79 (223)
T ss_pred c
Confidence 3
No 24
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.53 E-value=3.7e-13 Score=124.77 Aligned_cols=70 Identities=29% Similarity=0.459 Sum_probs=56.5
Q ss_pred cEEEEEeCCCCC--CcccH----HHHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHH--hcCCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTD--YSENM----TWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLK--DRFQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~--~~~~~----~~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~--~~~~~v~~V~GNHD~~ 121 (328)
|||++|||+|++ ..... +.++.+ +..++|+||++||+++.+ ..++.+.++|. ....|+++||||||.+
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i--~~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~ 78 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAI--EQLKPDLLVVTGDLTNDGEPEEYRRLKELLARLELPAPVIVVPGNHDAR 78 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHH--hcCCCCEEEEccCcCCCCCHHHHHHHHHHHhhccCCCceEeeCCCCcCC
Confidence 689999999998 33222 334445 567899999999999984 57888889999 6788999999999987
Q ss_pred CC
Q 042652 122 CR 123 (328)
Q Consensus 122 ~~ 123 (328)
..
T Consensus 79 ~~ 80 (301)
T COG1409 79 VV 80 (301)
T ss_pred ch
Confidence 64
No 25
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=99.52 E-value=3.2e-13 Score=116.86 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=92.8
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHh-cCCcEEEECCCCCCCCCCCCCch
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKD-RFQRVLFVPGNHDLWCRGEENDF 129 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~-~~~~v~~V~GNHD~~~~~~~~~~ 129 (328)
+|+|+++||+|.......++++.. ...++|+||++||+.... .+..+.. ...++++|.||.|......
T Consensus 1 ~m~ilviSDtH~~~~~~~~~~~~~--~~~~~d~vih~GD~~~~~-----~~~~l~~~~~~~i~~V~GN~D~~~~~~---- 69 (172)
T COG0622 1 MMKILVISDTHGPLRAIEKALKIF--NLEKVDAVIHAGDSTSPF-----TLDALEGGLAAKLIAVRGNCDGEVDQE---- 69 (172)
T ss_pred CcEEEEEeccCCChhhhhHHHHHh--hhcCCCEEEECCCcCCcc-----chHHhhcccccceEEEEccCCCccccc----
Confidence 599999999999875334444444 577999999999998764 2344444 4678999999999874210
Q ss_pred hhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCC
Q 042652 130 PDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPN 209 (328)
Q Consensus 130 ~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~ 209 (328)
..-....++++|++|.-+.++.-+ +
T Consensus 70 ----------------~~p~~~~~~~~g~ki~l~HGh~~~----------------------~----------------- 94 (172)
T COG0622 70 ----------------ELPEELVLEVGGVKIFLTHGHLYF----------------------V----------------- 94 (172)
T ss_pred ----------------cCChhHeEEECCEEEEEECCCccc----------------------c-----------------
Confidence 001123578899998544332100 0
Q ss_pred CCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec-cccChh
Q 042652 210 LPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA-PLAYPR 264 (328)
Q Consensus 210 ~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~-~~gy~~ 264 (328)
.+.....+.+.+.. ++++++|||||.+...+.+|+.++|+ |.+-|+
T Consensus 95 ----~~~~~~l~~la~~~-----~~Dvli~GHTH~p~~~~~~~i~~vNPGS~s~pr 141 (172)
T COG0622 95 ----KTDLSLLEYLAKEL-----GADVLIFGHTHKPVAEKVGGILLVNPGSVSGPR 141 (172)
T ss_pred ----ccCHHHHHHHHHhc-----CCCEEEECCCCcccEEEECCEEEEcCCCcCCCC
Confidence 01221222233322 58899999999999999999999987 555554
No 26
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.52 E-value=8.6e-14 Score=115.18 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=79.1
Q ss_pred EEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc-CCcEEEECCCCCCCCCCCCCchhhHH
Q 042652 55 FVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR-FQRVLFVPGNHDLWCRGEENDFPDSL 133 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~-~~~v~~V~GNHD~~~~~~~~~~~~~~ 133 (328)
+++||+|.... .++.+.....++|.++++||+.+. .++.+.++ ..++++|.||||.
T Consensus 1 ~viSDtH~~~~----~~~~~~~~~~~~d~ii~~GD~~~~------~~~~~~~~~~~~~~~V~GN~D~------------- 57 (129)
T cd07403 1 LVISDTESPAL----YSPEIKVRLEGVDLILSAGDLPKE------YLEYLVTMLNVPVYYVHGNHDV------------- 57 (129)
T ss_pred CeeccccCccc----cchHHHhhCCCCCEEEECCCCChH------HHHHHHHHcCCCEEEEeCCCcc-------------
Confidence 47999995532 222222246789999999998532 23334433 4579999999990
Q ss_pred HHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCCCCCC
Q 042652 134 EKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKI 213 (328)
Q Consensus 134 ~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~ 213 (328)
..+++|+| |....... . ...
T Consensus 58 ---------------------------------------------------~Ilv~H~p-p~~~~~~~-~-------~~~ 77 (129)
T cd07403 58 ---------------------------------------------------DILLTHAP-PAGIGDGE-D-------FAH 77 (129)
T ss_pred ---------------------------------------------------CEEEECCC-CCcCcCcc-c-------ccc
Confidence 11577888 75321110 0 124
Q ss_pred CCcHHHHHHHHHhhcccCCCccEEEEcccccCCceE-----ECCEEEEeccccCh
Q 042652 214 IGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAV-----LDGIRYVQAPLAYP 263 (328)
Q Consensus 214 ~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~-----~~g~~~v~~~~gy~ 263 (328)
.|++.+.+.+.+.. +++++|||+|.+.... +++|+++ |+.||.
T Consensus 78 ~g~~~l~~~l~~~~------~~~vl~GH~H~~~~~~~~~~~~~~t~~~-n~~~~~ 125 (129)
T cd07403 78 RGFEAFLDFIDRFR------PKLFIHGHTHLNYGYQLRIRRVGDTTVI-NAYGYR 125 (129)
T ss_pred cCHHHHHHHHHHHC------CcEEEEcCcCCCcCccccccccCCEEEE-eCCcEE
Confidence 57777777777753 6799999999998665 8999988 556764
No 27
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.51 E-value=5.2e-14 Score=128.53 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=50.3
Q ss_pred cEEEEEeCCCCCCccc---HHHHHHHhhcCCCCCEEEEcccccCC-------ch---hHHHHHHHHHhcCCcEEEECCCC
Q 042652 52 LRVFVLSDLHTDYSEN---MTWVKCLSTTRHKKDVLLVAGDVAEK-------YD---DFVLTMSLLKDRFQRVLFVPGNH 118 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~---~~~l~~l~~~~~~~D~li~~GDi~~~-------~~---~~~~~~~~l~~~~~~v~~V~GNH 118 (328)
||+++|||+|++.... +.+++.+.....++|.|+++||+++. .. .+...++.+++.+.|+++|+|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 7999999999976432 34555553344689999999999974 11 23334444444568999999999
Q ss_pred CCCC
Q 042652 119 DLWC 122 (328)
Q Consensus 119 D~~~ 122 (328)
|++.
T Consensus 81 D~~~ 84 (241)
T PRK05340 81 DFLL 84 (241)
T ss_pred chhh
Confidence 9864
No 28
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.50 E-value=4.2e-13 Score=120.50 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCCCcccH--------HHHHHHhhcCCCCCEEEEcccccCCch---hHHHHHHHHHh---cCCcEEEECCC
Q 042652 52 LRVFVLSDLHTDYSENM--------TWVKCLSTTRHKKDVLLVAGDVAEKYD---DFVLTMSLLKD---RFQRVLFVPGN 117 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~--------~~l~~l~~~~~~~D~li~~GDi~~~~~---~~~~~~~~l~~---~~~~v~~V~GN 117 (328)
+||+++||+|....... .+++.+ ++.++|+|+++||+++... ++..+.+.++. ...|+++++||
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~--~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GN 78 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNA--EALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGN 78 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHH--HHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCC
Confidence 48999999998654322 122333 4578999999999998653 44445455554 35899999999
Q ss_pred CCCC
Q 042652 118 HDLW 121 (328)
Q Consensus 118 HD~~ 121 (328)
||..
T Consensus 79 HD~~ 82 (214)
T cd07399 79 HDLV 82 (214)
T ss_pred Ccch
Confidence 9953
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.49 E-value=3.4e-14 Score=126.95 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=51.0
Q ss_pred EEEEEeCCCCCCccc---------------HHHHHHHhhcCCCCCEEEEcccccCCch----hHHHHHHHHHhc---CCc
Q 042652 53 RVFVLSDLHTDYSEN---------------MTWVKCLSTTRHKKDVLLVAGDVAEKYD----DFVLTMSLLKDR---FQR 110 (328)
Q Consensus 53 ri~~iSDlH~~~~~~---------------~~~l~~l~~~~~~~D~li~~GDi~~~~~----~~~~~~~~l~~~---~~~ 110 (328)
||+++||+|++.... .++++.+ +..++|+|+++||+++... .+..+.+.++++ ..|
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELA--IEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIP 78 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHH--HhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCC
Confidence 699999999986421 1223333 4678999999999999642 345566666665 689
Q ss_pred EEEECCCCCCCCCC
Q 042652 111 VLFVPGNHDLWCRG 124 (328)
Q Consensus 111 v~~V~GNHD~~~~~ 124 (328)
+++++||||.+...
T Consensus 79 v~~~~GNHD~~~~~ 92 (223)
T cd00840 79 VFIIAGNHDSPSRL 92 (223)
T ss_pred EEEecCCCCCcccc
Confidence 99999999987654
No 30
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=99.48 E-value=3.3e-13 Score=126.16 Aligned_cols=118 Identities=12% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc-----hhHHHHHHHHHhc--CCcEEEECCCCCCCC
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY-----DDFVLTMSLLKDR--FQRVLFVPGNHDLWC 122 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~-----~~~~~~~~~l~~~--~~~v~~V~GNHD~~~ 122 (328)
...||++++|+|.+.....+.++.+.....++|+||++||+++.. .....+++.++.+ ..|+++++||||...
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 82 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEADY 82 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCccccccc
Confidence 468999999999864445566777643347899999999999542 2345556666544 689999999999876
Q ss_pred CCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCC
Q 042652 123 RGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWY 167 (328)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~ 167 (328)
.........................-.-..+.+++++|+++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~ 127 (294)
T cd00839 83 NFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEV 127 (294)
T ss_pred CCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEeccc
Confidence 543110000000000000000000001135678999999998743
No 31
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.45 E-value=1.1e-12 Score=116.25 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=48.9
Q ss_pred CcEEEEEeCCCCCCccc-----------HHHHHHHhhcCCCCCEEEEcccccCCch-------hHHHHHHHHHhcCCcEE
Q 042652 51 GLRVFVLSDLHTDYSEN-----------MTWVKCLSTTRHKKDVLLVAGDVAEKYD-------DFVLTMSLLKDRFQRVL 112 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~-----------~~~l~~l~~~~~~~D~li~~GDi~~~~~-------~~~~~~~~l~~~~~~v~ 112 (328)
.+||+++||+|++.... .+.++.+. ...++|+||++||+++... .+..+++.+.+...|++
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVL-DAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHH-hhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 48999999999965421 12233221 4678999999999998642 12344444555578999
Q ss_pred EECCCCCCCC
Q 042652 113 FVPGNHDLWC 122 (328)
Q Consensus 113 ~V~GNHD~~~ 122 (328)
+++||||...
T Consensus 81 ~~~GNHD~~g 90 (199)
T cd07383 81 ATFGNHDGYD 90 (199)
T ss_pred EECccCCCCC
Confidence 9999999543
No 32
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.44 E-value=2.3e-13 Score=113.33 Aligned_cols=70 Identities=26% Similarity=0.456 Sum_probs=48.4
Q ss_pred cEEEEEeCCCCCCccc---HHHHHHHhhcCCCCCEEEEcccccCCchhHHHH------HHHHHhcCCcEEEECCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSEN---MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLT------MSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~---~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~------~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
|||+++||+|.+.... ...+.... ...++|+||++||+++........ .........|+++++||||+..
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~-~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIA-AENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHH-HHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHh-ccCCCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 7999999999987643 12222221 567899999999999986432222 2233445789999999999874
No 33
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=99.43 E-value=1.6e-12 Score=120.64 Aligned_cols=210 Identities=15% Similarity=0.034 Sum_probs=109.7
Q ss_pred cEEEEEeCCCCC-CcccHHHHHHHhh--cCCCCCEEEEcccccC-Cc------hhHH-HHHHHHHh--cCCcEEEECCCC
Q 042652 52 LRVFVLSDLHTD-YSENMTWVKCLST--TRHKKDVLLVAGDVAE-KY------DDFV-LTMSLLKD--RFQRVLFVPGNH 118 (328)
Q Consensus 52 ~ri~~iSDlH~~-~~~~~~~l~~l~~--~~~~~D~li~~GDi~~-~~------~~~~-~~~~~l~~--~~~~v~~V~GNH 118 (328)
++|++++|.=.. .....++.+.+.. ...++|++|++||++. .+ ..+. .+.+.+.. ...|+++|+|||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 80 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGNH 80 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCCc
Confidence 579999999875 3333333333322 3478999999999863 22 1111 22223222 468999999999
Q ss_pred CCCCCCCCCchhhHHHHHHHHHhcccccccc--cceEEEc------CEEEeccCCCCC-CCCC-------C-cc------
Q 042652 119 DLWCRGEENDFPDSLEKLNKLLDACRGLGVE--INPVVID------GLGIIPLFSWYH-ESFD-------R-EK------ 175 (328)
Q Consensus 119 D~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~--~~~~~i~------g~~iiG~~~w~~-~~f~-------~-e~------ 175 (328)
|....... .. .+..+. ........ ...+..+ +++|+++++... ..+. . .+
T Consensus 81 D~~~~~~~-----~~-~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~~~~Q 153 (277)
T cd07378 81 DYSGNVSA-----QI-DYTKRP-NSPRWTMPAYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKLAEEQ 153 (277)
T ss_pred ccCCCchh-----ee-ehhccC-CCCCccCcchheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhhHHHH
Confidence 98753211 00 000000 00111111 1234455 689999887321 1110 0 00
Q ss_pred ------cccCCccCCcceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceE
Q 042652 176 ------DISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAV 249 (328)
Q Consensus 176 ------~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~ 249 (328)
.+.........+++||| +..... .......++.+.++..++ +++++++||+|......
T Consensus 154 ~~wL~~~L~~~~~~~~iv~~H~P-~~~~~~-------------~~~~~~~~~~l~~l~~~~--~v~~vl~GH~H~~~~~~ 217 (277)
T cd07378 154 LAWLEKTLAASTADWKIVVGHHP-IYSSGE-------------HGPTSCLVDRLLPLLKKY--KVDAYLSGHDHNLQHIK 217 (277)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcc-ceeCCC-------------CCCcHHHHHHHHHHHHHc--CCCEEEeCCcccceeee
Confidence 11111111234788999 753211 001123344444444432 58899999999988887
Q ss_pred EC--CEEEEecc-ccChhhhh-----------cccCCCCCCcceEEecC
Q 042652 250 LD--GIRYVQAP-LAYPRERK-----------RRMNGGENQLPYCVYSD 284 (328)
Q Consensus 250 ~~--g~~~v~~~-~gy~~~~~-----------~~~~~~~g~~~~~l~~d 284 (328)
.+ |+.+++.. .|++.... .......||..+.+.++
T Consensus 218 ~~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~~ 266 (277)
T cd07378 218 DDGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTKE 266 (277)
T ss_pred cCCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEecC
Confidence 77 88888754 34332111 12223567777777755
No 34
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=99.39 E-value=9.3e-12 Score=114.93 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=104.4
Q ss_pred EEEEeCCCCCCcccHHHHHHHhh-cCCCCCEEEEcccccCCc--hh------------HHHHHHHHHh---cCCcEEEEC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLST-TRHKKDVLLVAGDVAEKY--DD------------FVLTMSLLKD---RFQRVLFVP 115 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~-~~~~~D~li~~GDi~~~~--~~------------~~~~~~~l~~---~~~~v~~V~ 115 (328)
|++..|+|+++....+.++.+.. +..++|+||++||+.... .+ +..+.+++.. ...|+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 57899999987654443444432 345799999999997532 11 2233344443 456789999
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHhccccccc--ccceEEEcCEEEeccCCCCC-CCCCC---------cccccC----
Q 042652 116 GNHDLWCRGEENDFPDSLEKLNKLLDACRGLGV--EINPVVIDGLGIIPLFSWYH-ESFDR---------EKDISG---- 179 (328)
Q Consensus 116 GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v--~~~~~~i~g~~iiG~~~w~~-~~f~~---------e~~i~~---- 179 (328)
||||... ....+..-+. .+.++.. .+..++++|++|+|+.+.+. ..+.. +.++..
T Consensus 81 GNHE~~~------~l~~l~~gg~---v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y~~ 151 (262)
T cd00844 81 GNHEASN------YLWELPYGGW---VAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAYHV 151 (262)
T ss_pred CCCCCHH------HHHhhcCCCe---ecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhhhh
Confidence 9999532 1111100000 1222211 34678899999999998553 22211 111110
Q ss_pred ----------CccCCcceeeecccCccccccccc--cc-CCCCC-----CCCCCcHHHHHHHHHhhcccCCCccEEEEcc
Q 042652 180 ----------IRILPLEMVIHFLFSLQDLCPEKR--ML-FYPNL-----PKIIGSDFLELRIRSIHGAMGSTSACHVFGH 241 (328)
Q Consensus 180 ----------~~~~~~~lv~H~p~P~~~~~~~~~--~~-~~~~~-----~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH 241 (328)
..-....+++|-+ |.......+. .+ ..|.+ ....||..+.++++.++|+ +|+|||
T Consensus 152 r~~~~~kl~~~~~~vDIlLSHdW-P~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPr------yhf~gH 224 (262)
T cd00844 152 RNIEVFKLKQLKQPIDIFLSHDW-PRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPR------YWFSAH 224 (262)
T ss_pred hHHHHHHHHhcCCCCcEEEeCCC-CcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCC------EEEEec
Confidence 0011234889999 9763221110 00 00111 2267999999999999875 999999
Q ss_pred cccCCceE
Q 042652 242 THFSWDAV 249 (328)
Q Consensus 242 ~H~~~~~~ 249 (328)
.|..+...
T Consensus 225 ~H~~f~~~ 232 (262)
T cd00844 225 LHVKFAAL 232 (262)
T ss_pred CCccccee
Confidence 99977644
No 35
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.38 E-value=4e-12 Score=115.38 Aligned_cols=68 Identities=24% Similarity=0.401 Sum_probs=47.6
Q ss_pred EEEeCCCCCCcc---cHHHHHHHhhcCCCCCEEEEcccccCCc-------h---hHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 55 FVLSDLHTDYSE---NMTWVKCLSTTRHKKDVLLVAGDVAEKY-------D---DFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 55 ~~iSDlH~~~~~---~~~~l~~l~~~~~~~D~li~~GDi~~~~-------~---~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
+++||+|++... .+.+++.+.....++|+|+++||+++.. . .+...++.|++.+.+|++|+||||++
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 789999997642 2456666643223799999999999831 1 22344555555568999999999986
Q ss_pred C
Q 042652 122 C 122 (328)
Q Consensus 122 ~ 122 (328)
.
T Consensus 82 ~ 82 (231)
T TIGR01854 82 I 82 (231)
T ss_pred h
Confidence 4
No 36
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.32 E-value=7.4e-12 Score=116.83 Aligned_cols=95 Identities=22% Similarity=0.278 Sum_probs=73.8
Q ss_pred ccccceeeeceeecCCcccCCCCCCCcEEEEEeCCCCCCcc--cHHHHHHHhhcCCCCCEEEEcccccCC--chhHHHHH
Q 042652 26 QMKYTTTRRPEILTSSAAASSTSASGLRVFVLSDLHTDYSE--NMTWVKCLSTTRHKKDVLLVAGDVAEK--YDDFVLTM 101 (328)
Q Consensus 26 ~~~~~~v~~~~i~~~~~~~~~~~~~~~ri~~iSDlH~~~~~--~~~~l~~l~~~~~~~D~li~~GDi~~~--~~~~~~~~ 101 (328)
......+.++.+..+..+ .+..+.||+++||+|..... ..+++.++ ....+|+|+++||+.+. .+......
T Consensus 22 ~~~~l~~~~~~i~~~~~~---~~~~~~~iv~lSDlH~~~~~~~~~~~~~~i--~~~~~DlivltGD~~~~~~~~~~~~~~ 96 (284)
T COG1408 22 EPGWLRVVKLTILTPKLP---ASLQGLKIVQLSDLHSLPFREEKLALLIAI--ANELPDLIVLTGDYVDGDRPPGVAALA 96 (284)
T ss_pred ccceEEEEEEEeecCCCC---cccCCeEEEEeehhhhchhhHHHHHHHHHH--HhcCCCEEEEEeeeecCCCCCCHHHHH
Confidence 345566778888888888 77889999999999996543 34556555 44566999999999994 56677777
Q ss_pred HHHHhcC--CcEEEECCCCCCCCCCC
Q 042652 102 SLLKDRF--QRVLFVPGNHDLWCRGE 125 (328)
Q Consensus 102 ~~l~~~~--~~v~~V~GNHD~~~~~~ 125 (328)
+.++++. .++|+|.||||++....
T Consensus 97 ~~L~~L~~~~gv~av~GNHd~~~~~~ 122 (284)
T COG1408 97 LFLAKLKAPLGVFAVLGNHDYGVDRS 122 (284)
T ss_pred HHHHhhhccCCEEEEecccccccccc
Confidence 8888764 46999999999987654
No 37
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=99.30 E-value=1.2e-11 Score=120.51 Aligned_cols=72 Identities=24% Similarity=0.342 Sum_probs=52.4
Q ss_pred CCcEEEEEeCCCCCCccc------------HHHHHHHhhcCCCCCEEEEcccccCCc----hhHHHHHHHHHh-------
Q 042652 50 SGLRVFVLSDLHTDYSEN------------MTWVKCLSTTRHKKDVLLVAGDVAEKY----DDFVLTMSLLKD------- 106 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~------------~~~l~~l~~~~~~~D~li~~GDi~~~~----~~~~~~~~~l~~------- 106 (328)
++|||+++||+|++.... +++++.+ ...++|+||++||++|.. +.+..+++.|++
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a--~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p 79 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIA--KEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKP 79 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHH--HHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCc
Confidence 579999999999986432 1223333 577899999999999975 234455555553
Q ss_pred -----------------------------cCCcEEEECCCCCCCCC
Q 042652 107 -----------------------------RFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 107 -----------------------------~~~~v~~V~GNHD~~~~ 123 (328)
...|||+|.||||...+
T Consensus 80 ~~~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~~ 125 (405)
T TIGR00583 80 CELEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPSG 125 (405)
T ss_pred cchhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCccc
Confidence 35799999999998764
No 38
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=99.27 E-value=4.5e-11 Score=103.26 Aligned_cols=67 Identities=21% Similarity=0.175 Sum_probs=48.3
Q ss_pred EEEeCCCCCCccc---------------HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCC
Q 042652 55 FVLSDLHTDYSEN---------------MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHD 119 (328)
Q Consensus 55 ~~iSDlH~~~~~~---------------~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD 119 (328)
+++||+|++.... +.+++.+.....++|.|+++||+++....... ++.+++...++++|+||||
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~~~~~~~v~GNHD 80 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRLNGRKHLIKGNHD 80 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhCCCCeEEEeCCCC
Confidence 6899999987521 23344443334478999999999987642222 6677777779999999999
Q ss_pred CCC
Q 042652 120 LWC 122 (328)
Q Consensus 120 ~~~ 122 (328)
...
T Consensus 81 ~~~ 83 (168)
T cd07390 81 SSL 83 (168)
T ss_pred chh
Confidence 764
No 39
>PLN02533 probable purple acid phosphatase
Probab=99.25 E-value=1e-10 Score=115.26 Aligned_cols=193 Identities=17% Similarity=0.100 Sum_probs=101.2
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc---hhHHHHHHHHHhc--CCcEEEECCCCCCCCCC
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY---DDFVLTMSLLKDR--FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~---~~~~~~~~~l~~~--~~~v~~V~GNHD~~~~~ 124 (328)
...||++++|+|.... ....++.+ ...++|+||++||++... .....+.+.++.+ ..|+++++||||.....
T Consensus 138 ~~~~f~v~GDlG~~~~-~~~tl~~i--~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~ 214 (427)
T PLN02533 138 FPIKFAVSGDLGTSEW-TKSTLEHV--SKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIP 214 (427)
T ss_pred CCeEEEEEEeCCCCcc-cHHHHHHH--HhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCceEEeCccccccccc
Confidence 5799999999986432 23456666 457899999999999653 1223344444433 57999999999986421
Q ss_pred CCCchhhHHHHHH-HHHhccccccc---ccceEEEcCEEEeccCCCCCCCCCC------cccccCCc--cCCcc-eeeec
Q 042652 125 EENDFPDSLEKLN-KLLDACRGLGV---EINPVVIDGLGIIPLFSWYHESFDR------EKDISGIR--ILPLE-MVIHF 191 (328)
Q Consensus 125 ~~~~~~~~~~~~~-~l~~~~~~l~v---~~~~~~i~g~~iiG~~~w~~~~f~~------e~~i~~~~--~~~~~-lv~H~ 191 (328)
... ...+..+. ++.-....-+. .-..+.++++.|+.+++..+..... ++++.... ..+.. +++|+
T Consensus 215 ~~~--~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~ 292 (427)
T PLN02533 215 ILH--PEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHA 292 (427)
T ss_pred ccc--CcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCC
Confidence 100 00001111 00000000010 1235788999999998765432111 12332221 11223 45677
Q ss_pred ccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCce--------EECCEEEEecc
Q 042652 192 LFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDA--------VLDGIRYVQAP 259 (328)
Q Consensus 192 p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~--------~~~g~~~v~~~ 259 (328)
| +........ . ..-+..+++.++.+..+ .+|+++++||+|..... ...|+.|+.+.
T Consensus 293 P-~y~s~~~~~--------~-~~~~~~~r~~le~Ll~~--~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G 356 (427)
T PLN02533 293 P-WYNSNEAHQ--------G-EKESVGMKESMETLLYK--ARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIG 356 (427)
T ss_pred C-eeecccccC--------C-cchhHHHHHHHHHHHHH--hCCcEEEecceecccccccccCCccCCCCCEEEEeC
Confidence 7 653211110 0 00012233344444433 25999999999974421 22466666553
No 40
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.25 E-value=6.8e-11 Score=110.99 Aligned_cols=165 Identities=21% Similarity=0.138 Sum_probs=85.1
Q ss_pred HHHHhhcCCCCCEEEEcccccCCch-----------hHHHHHHHHHhc--CCcEEEECCCCCCCCCCCCCc---hhhHHH
Q 042652 71 VKCLSTTRHKKDVLLVAGDVAEKYD-----------DFVLTMSLLKDR--FQRVLFVPGNHDLWCRGEEND---FPDSLE 134 (328)
Q Consensus 71 l~~l~~~~~~~D~li~~GDi~~~~~-----------~~~~~~~~l~~~--~~~v~~V~GNHD~~~~~~~~~---~~~~~~ 134 (328)
++.++....++|+||++||++.... ....+.+.+++. ..||+.++||||......... ......
T Consensus 59 l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~ 138 (296)
T cd00842 59 LEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYD 138 (296)
T ss_pred HHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCCCcccccCCcccccHHHH
Confidence 4444333458999999999997631 123344556554 579999999999865421100 000111
Q ss_pred HHHHHHh-cc-----ccccccc-ceEE-EcCEEEeccCC--CCCC-CC-------CCccc-------ccCCc--cCCcce
Q 042652 135 KLNKLLD-AC-----RGLGVEI-NPVV-IDGLGIIPLFS--WYHE-SF-------DREKD-------ISGIR--ILPLEM 187 (328)
Q Consensus 135 ~~~~l~~-~~-----~~l~v~~-~~~~-i~g~~iiG~~~--w~~~-~f-------~~e~~-------i~~~~--~~~~~l 187 (328)
.+..+.. .. ..+.-.+ ..+. .++++++++++ |... .+ +..+. +...+ .....+
T Consensus 139 ~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~~v~I 218 (296)
T cd00842 139 ALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDELQEAEQAGEKVWI 218 (296)
T ss_pred HHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 1111110 00 0000011 1223 57899999887 3221 11 00111 11110 112347
Q ss_pred eeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEE
Q 042652 188 VIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVL 250 (328)
Q Consensus 188 v~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~ 250 (328)
++|+| |....... .....+.+.++++++.. .+..+++||+|...-..+
T Consensus 219 ~~HiP-p~~~~~~~----------~~~~~~~~~~ii~~y~~----~i~~~~~GH~H~d~~~~~ 266 (296)
T cd00842 219 IGHIP-PGVNSYDT----------LENWSERYLQIINRYSD----TIAGQFFGHTHRDEFRVF 266 (296)
T ss_pred EeccC-CCCccccc----------chHHHHHHHHHHHHHHH----hhheeeecccccceEEEE
Confidence 88999 86432210 01234567777777752 367899999999774443
No 41
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.24 E-value=7e-11 Score=95.10 Aligned_cols=63 Identities=35% Similarity=0.406 Sum_probs=44.9
Q ss_pred EEEeCCCCCCcccHHHH--HHHhhcCCCCCEEEEcccccCCchh--HHHH--HHHHHhcCCcEEEECCCCC
Q 042652 55 FVLSDLHTDYSENMTWV--KCLSTTRHKKDVLLVAGDVAEKYDD--FVLT--MSLLKDRFQRVLFVPGNHD 119 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l--~~l~~~~~~~D~li~~GDi~~~~~~--~~~~--~~~l~~~~~~v~~V~GNHD 119 (328)
+++||+|.+........ ... ...++|.||++||+++.... .... ...+.....|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~--~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALA--AAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHh--cccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47899999876544332 222 57889999999999997532 1111 2445556789999999999
No 42
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.23 E-value=4.7e-10 Score=103.50 Aligned_cols=159 Identities=14% Similarity=0.165 Sum_probs=88.2
Q ss_pred cCCCCCEEEEcccccCCch---------hHHHHHHHHHhc--CCcEEEECCCCCCCCCCCCCchhhHHHHHHHHHhcccc
Q 042652 77 TRHKKDVLLVAGDVAEKYD---------DFVLTMSLLKDR--FQRVLFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRG 145 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~---------~~~~~~~~l~~~--~~~v~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (328)
...+||+||++||+++.+. .+..+.+.+... ..|+++||||||...... ........+...
T Consensus 42 ~~l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~--~~~~~~~rf~~~------ 113 (257)
T cd08163 42 KQLKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNG--VVLPVRQRFEKY------ 113 (257)
T ss_pred HhcCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCC--CCHHHHHHHHHH------
Confidence 3568999999999999753 244555555543 268999999999854432 112223333322
Q ss_pred cccccceEEEcCEEEeccCCCCC-----CCCCCc-c-----cccCC-ccCCcceeeecccCcc---cccccccccCCCCC
Q 042652 146 LGVEINPVVIDGLGIIPLFSWYH-----ESFDRE-K-----DISGI-RILPLEMVIHFLFSLQ---DLCPEKRMLFYPNL 210 (328)
Q Consensus 146 l~v~~~~~~i~g~~iiG~~~w~~-----~~f~~e-~-----~i~~~-~~~~~~lv~H~p~P~~---~~~~~~~~~~~~~~ 210 (328)
++-.+..+.+++++|+++++-.- .....+ . .+... .-.+..|++|+| ... ..|.+.+ ..++..
T Consensus 114 Fg~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~P-lyr~~~~~cg~~r-e~~~~~ 191 (257)
T cd08163 114 FGPTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVKSKPRILLTHVP-LYRPPNTSCGPLR-ESKTPL 191 (257)
T ss_pred hCCCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCCCCcEEEEeccc-cccCCCCCCCCcc-ccCCCC
Confidence 23334567889999999887321 111110 0 01110 112345899999 432 2332111 001100
Q ss_pred ----C----CCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEEC
Q 042652 211 ----P----KIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLD 251 (328)
Q Consensus 211 ----~----~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~ 251 (328)
+ ..+..+....+|+.++| .+++.||.|...+....
T Consensus 192 ~~~~g~~yq~~l~~~~s~~il~~~~P------~~vfsGhdH~~C~~~h~ 234 (257)
T cd08163 192 PYGYGYQYQNLLEPSLSEVILKAVQP------VIAFSGDDHDYCEVVHE 234 (257)
T ss_pred CCCCCccceeecCHHHHHHHHHhhCC------cEEEecCCCccceeEcc
Confidence 0 12233444556667764 59999999998876654
No 43
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=99.22 E-value=5.1e-10 Score=93.46 Aligned_cols=84 Identities=24% Similarity=0.234 Sum_probs=57.3
Q ss_pred CcEEEEEeCCCCCCcc--------c-----HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCC
Q 042652 51 GLRVFVLSDLHTDYSE--------N-----MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGN 117 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~--------~-----~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GN 117 (328)
+..++++||+|++... + ..++..+...-..-|.|.+.||++.....-..+.++++.++..+.+|+||
T Consensus 3 m~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnGrkhlv~GN 82 (186)
T COG4186 3 MTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNGRKHLVPGN 82 (186)
T ss_pred eeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCCcEEEeeCC
Confidence 4568999999998642 1 12344333233456999999999987665566777888888889999999
Q ss_pred CCCCCCCCCCchhhHHH
Q 042652 118 HDLWCRGEENDFPDSLE 134 (328)
Q Consensus 118 HD~~~~~~~~~~~~~~~ 134 (328)
||-....-.+.+.++.+
T Consensus 83 hDk~~~~~~~~~~~svq 99 (186)
T COG4186 83 HDKCHPMYRHAYFDSVQ 99 (186)
T ss_pred CCCCcccccchhhHHHH
Confidence 99765433233434433
No 44
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.20 E-value=2.3e-10 Score=97.81 Aligned_cols=47 Identities=23% Similarity=0.250 Sum_probs=32.5
Q ss_pred cCCCCCEEEEcccccCCch-----hHHHHHHHHHhc-----CCcEEEECCCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYD-----DFVLTMSLLKDR-----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~-----~~~~~~~~l~~~-----~~~v~~V~GNHD~~~~ 123 (328)
+..+||.||++||+++... .+...++.+.+. ..|+++|+||||....
T Consensus 35 ~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~~ 91 (156)
T cd08165 35 WLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGFH 91 (156)
T ss_pred HhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCCC
Confidence 4678999999999998642 122222223221 4689999999998653
No 45
>PRK04036 DNA polymerase II small subunit; Validated
Probab=99.18 E-value=5.1e-10 Score=112.51 Aligned_cols=199 Identities=19% Similarity=0.307 Sum_probs=104.5
Q ss_pred ceeecCCccc---CCCCCCCcEEEEEeCCCCCCcc-----cHHHHHHHhhc-------CCCCCEEEEcccccCCc-----
Q 042652 35 PEILTSSAAA---SSTSASGLRVFVLSDLHTDYSE-----NMTWVKCLSTT-------RHKKDVLLVAGDVAEKY----- 94 (328)
Q Consensus 35 ~~i~~~~~~~---~~~~~~~~ri~~iSDlH~~~~~-----~~~~l~~l~~~-------~~~~D~li~~GDi~~~~----- 94 (328)
-+|..|.+|. ..+..+.++++++||+|++... ...+++.+... ..++|.||++||+++..
T Consensus 224 ~~i~~p~~p~~~~~~~~~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~ 303 (504)
T PRK04036 224 DEIIRPDVPRTKEPPTKDEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPG 303 (504)
T ss_pred EEEECCCCCccCCCCcCCCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCcc
Confidence 3556666652 1233457899999999987642 13345555311 56789999999999841
Q ss_pred -----------hhHHHHHHHHHhc--CCcEEEECCCCCCCCCCCCCc-hhhHHHHHHHHHhccccccc-ccc-eEEEcCE
Q 042652 95 -----------DDFVLTMSLLKDR--FQRVLFVPGNHDLWCRGEEND-FPDSLEKLNKLLDACRGLGV-EIN-PVVIDGL 158 (328)
Q Consensus 95 -----------~~~~~~~~~l~~~--~~~v~~V~GNHD~~~~~~~~~-~~~~~~~~~~l~~~~~~l~v-~~~-~~~i~g~ 158 (328)
..+..+.++|+++ ..+++++|||||.......+. +-.. +..+... ..+.+ .+. .+.++|.
T Consensus 304 ~~~~~~~~~~~~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~---l~~~l~~-~~v~~lsNP~~i~l~G~ 379 (504)
T PRK04036 304 QEEELEIVDIYEQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEE---IRSLFPE-HNVTFVSNPALVNLHGV 379 (504)
T ss_pred chhhccchhhHHHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHH---HHHhcCc-CCeEEecCCeEEEECCE
Confidence 1234566677665 468999999999865322111 1111 2111111 11221 222 3567898
Q ss_pred EEeccCCCC-CCCCCCcccccCCccC-Ccc------eeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhccc
Q 042652 159 GIIPLFSWY-HESFDREKDISGIRIL-PLE------MVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAM 230 (328)
Q Consensus 159 ~iiG~~~w~-~~~f~~e~~i~~~~~~-~~~------lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~ 230 (328)
++++..|-. +.-. +.+...... +.. -.-|-. |..... ...+|. ..+.| .|+.
T Consensus 380 ~iLl~HG~~idDl~---~~i~~~s~~~p~~~m~~~l~~rHla-Pt~p~~----~~~~p~-----~~D~l--vi~~----- 439 (504)
T PRK04036 380 DVLIYHGRSIDDVI---SLIPGASYEKPGKAMEELLKRRHLA-PIYGGR----TPIAPE-----KEDYL--VIDE----- 439 (504)
T ss_pred EEEEECCCCHHHHH---hhcccccccCHHHHHHHHHHhcccC-CCCCCC----EEeCcC-----CCCCE--EEec-----
Confidence 887765421 1000 000000000 001 112555 532110 001110 01100 0112
Q ss_pred CCCccEEEEcccccCCceEECCEEEEecc
Q 042652 231 GSTSACHVFGHTHFSWDAVLDGIRYVQAP 259 (328)
Q Consensus 231 ~~~v~~~i~GH~H~~~~~~~~g~~~v~~~ 259 (328)
-++++++||+|......++|++++|++
T Consensus 440 --~Pdv~~~GH~H~~~~~~~~g~~~IN~g 466 (504)
T PRK04036 440 --VPDIFHTGHVHINGYGKYRGVLLINSG 466 (504)
T ss_pred --CCCEEEeCCCCccceEEECCEEEEECC
Confidence 246999999999988899999999875
No 46
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=99.13 E-value=9.9e-11 Score=104.47 Aligned_cols=68 Identities=29% Similarity=0.390 Sum_probs=42.4
Q ss_pred EEEeCCCCCCccc--HHHHHHHhhc--CCCCCEEEEcccccCCc--------hhHHHH---HHHHHhcCCcEEEECCCCC
Q 042652 55 FVLSDLHTDYSEN--MTWVKCLSTT--RHKKDVLLVAGDVAEKY--------DDFVLT---MSLLKDRFQRVLFVPGNHD 119 (328)
Q Consensus 55 ~~iSDlH~~~~~~--~~~l~~l~~~--~~~~D~li~~GDi~~~~--------~~~~~~---~~~l~~~~~~v~~V~GNHD 119 (328)
++|||+|++.... ......+... ..++|.|+++||+++.. ...... +..+.....++++|+||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 4899999986543 2222222111 25899999999999842 111221 2222234679999999999
Q ss_pred CCC
Q 042652 120 LWC 122 (328)
Q Consensus 120 ~~~ 122 (328)
+..
T Consensus 81 ~~~ 83 (217)
T cd07398 81 FLL 83 (217)
T ss_pred HHH
Confidence 864
No 47
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=99.13 E-value=5.7e-10 Score=101.96 Aligned_cols=68 Identities=24% Similarity=0.461 Sum_probs=46.9
Q ss_pred EEEeCCCCCCccc-----HHHHHHHhhcC---CCCCEEEEcccccCCc----------------hhHHHHHHHHHhc--C
Q 042652 55 FVLSDLHTDYSEN-----MTWVKCLSTTR---HKKDVLLVAGDVAEKY----------------DDFVLTMSLLKDR--F 108 (328)
Q Consensus 55 ~~iSDlH~~~~~~-----~~~l~~l~~~~---~~~D~li~~GDi~~~~----------------~~~~~~~~~l~~~--~ 108 (328)
++|||+|++.... +.+++.+.... .++|.||++||+++.. +.+..+.++++++ .
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 6899999876421 23445443222 3679999999999862 1234456666665 4
Q ss_pred CcEEEECCCCCCCC
Q 042652 109 QRVLFVPGNHDLWC 122 (328)
Q Consensus 109 ~~v~~V~GNHD~~~ 122 (328)
.+|++|+||||...
T Consensus 82 ~~v~~ipGNHD~~~ 95 (243)
T cd07386 82 IKIIIIPGNHDAVR 95 (243)
T ss_pred CeEEEeCCCCCccc
Confidence 78999999999865
No 48
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.11 E-value=3.5e-10 Score=101.34 Aligned_cols=68 Identities=24% Similarity=0.422 Sum_probs=47.8
Q ss_pred EEEeCCCCCCccc---HHHHHHHhhcCCCCCEEEEcccccCCc----------hhHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 55 FVLSDLHTDYSEN---MTWVKCLSTTRHKKDVLLVAGDVAEKY----------DDFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 55 ~~iSDlH~~~~~~---~~~l~~l~~~~~~~D~li~~GDi~~~~----------~~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
++|||+|++.... .-+++.++....++|.|.+.|||++.. ++....+..+++.+.+||+++||||+.
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~Dfl 80 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLARKGTRVYYIHGNHDFL 80 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHhcCCeEEEecCchHHH
Confidence 4799999985432 234555544455789999999999841 133444455555689999999999975
Q ss_pred C
Q 042652 122 C 122 (328)
Q Consensus 122 ~ 122 (328)
.
T Consensus 81 l 81 (237)
T COG2908 81 L 81 (237)
T ss_pred H
Confidence 4
No 49
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.10 E-value=1.2e-09 Score=98.49 Aligned_cols=67 Identities=24% Similarity=0.396 Sum_probs=53.7
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
-||+++||+|......++.++.+. -..+.|.++++||+++.+....++++.+.+ ..+++|.||||..
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~-~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~ 81 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLS-FCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAM 81 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcC-CCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHH
Confidence 389999999998876666666552 145789999999999998877888888875 3578999999964
No 50
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=99.10 E-value=2.1e-10 Score=103.87 Aligned_cols=193 Identities=21% Similarity=0.279 Sum_probs=116.0
Q ss_pred CCCCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc--hhHHHHHHHHHhc-CCcEEEECCCCCCCCCC
Q 042652 48 SASGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY--DDFVLTMSLLKDR-FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 48 ~~~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~~-~~~v~~V~GNHD~~~~~ 124 (328)
+....|++.|||+|-.... +. ..+.-|+++++||++.-+ +++..+-+++.++ ..-.++|.||||+.-..
T Consensus 58 ~~~~~r~VcisdtH~~~~~-------i~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~gslph~yKIVIaGNHELtFd~ 129 (305)
T KOG3947|consen 58 GPGYARFVCISDTHELTFD-------IN-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWLGSLPHEYKIVIAGNHELTFDH 129 (305)
T ss_pred CCCceEEEEecCcccccCc-------cc-cCCCCceEEeccCCccccCHHHHHhhhHHhccCcceeeEEEeeccceeecc
Confidence 3367899999999976543 11 246789999999999853 5677777888777 45689999999987654
Q ss_pred CCCc----------hhhHHHHHH--------HHHhcccccccccceEEEcCEEEeccCCCCC----CCCCCc---ccccC
Q 042652 125 EEND----------FPDSLEKLN--------KLLDACRGLGVEINPVVIDGLGIIPLFSWYH----ESFDRE---KDISG 179 (328)
Q Consensus 125 ~~~~----------~~~~~~~~~--------~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~----~~f~~e---~~i~~ 179 (328)
+.-. ...+..+++ .+.-.| +.+....+++.|++|.|. .|.. .+|... ..+.+
T Consensus 130 ef~~~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~--iYLqD~~vtv~G~~Iygs-pw~p~~~g~~f~l~rg~~~ld~ 206 (305)
T KOG3947|consen 130 EFMADLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNC--IYLQDSEVTVRGVRIYGS-PWTPLLPGWAFNLPRGQSLLDK 206 (305)
T ss_pred cccchhhccccceecCccccccCccccccccchhcee--EEEecCcEEEEEEEEecC-CCCcccCchhhhhhhhHhhhHH
Confidence 3100 001111111 010011 223445577788888775 3442 122110 11122
Q ss_pred CccCC---cceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHH-hhcccCCCccEEEEcccccCCceEECCE-E
Q 042652 180 IRILP---LEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRS-IHGAMGSTSACHVFGHTHFSWDAVLDGI-R 254 (328)
Q Consensus 180 ~~~~~---~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~-~~~~~~~~v~~~i~GH~H~~~~~~~~g~-~ 254 (328)
|...+ ..+++|.| |..... ... .. -+...|+..+...+++ ++ .++++|||+|+.++.+-+|. +
T Consensus 207 W~~ip~~iDvL~tHtP-PlG~gd-~~~--~~--~gqr~GC~ell~tVe~rvq------pk~hVfGhvhe~~Gvta~G~t~ 274 (305)
T KOG3947|consen 207 WNQIPGGIDVLITHTP-PLGHGD-LVP--VF--SGQRNGCVELLNTVERRVQ------PKYHVFGHVHEGHGVTADGYTT 274 (305)
T ss_pred HhcCccccceeccCCC-CCCcch-hcc--cc--cCcccCHHHHHHhHhhccc------cceEEeeeeecCceeeecCccc
Confidence 22222 23789999 976221 000 01 2567899877666665 43 56999999999999888775 7
Q ss_pred EEeccccCh
Q 042652 255 YVQAPLAYP 263 (328)
Q Consensus 255 ~v~~~~gy~ 263 (328)
+++.++|-.
T Consensus 275 fina~~C~~ 283 (305)
T KOG3947|consen 275 FINAELCNI 283 (305)
T ss_pred cccHHHhhh
Confidence 777777643
No 51
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=6.4e-10 Score=102.42 Aligned_cols=71 Identities=28% Similarity=0.350 Sum_probs=49.2
Q ss_pred cEEEEEeCCCCCCccc--------HHHHHHHhh--cCCCCCEEEEcccccCCch-------hHHHHHHHHHhcC-CcEEE
Q 042652 52 LRVFVLSDLHTDYSEN--------MTWVKCLST--TRHKKDVLLVAGDVAEKYD-------DFVLTMSLLKDRF-QRVLF 113 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~--------~~~l~~l~~--~~~~~D~li~~GDi~~~~~-------~~~~~~~~l~~~~-~~v~~ 113 (328)
|||+++||+|++.... ...++.+.. ...++|+|+++||++|... .+..+++.|++.. .||++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 8999999999975321 122332221 4678999999999999742 1234444555555 79999
Q ss_pred ECCCCCCCC
Q 042652 114 VPGNHDLWC 122 (328)
Q Consensus 114 V~GNHD~~~ 122 (328)
|+||||...
T Consensus 81 i~GNHD~~~ 89 (253)
T TIGR00619 81 ISGNHDSAQ 89 (253)
T ss_pred EccCCCChh
Confidence 999999864
No 52
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=99.00 E-value=7.5e-10 Score=108.51 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=50.3
Q ss_pred cEEEEEeCCCCCCcc--------cHHHHHHHhh--cCCCCCEEEEcccccCCch-------hHHHHHHHHHhcCCcEEEE
Q 042652 52 LRVFVLSDLHTDYSE--------NMTWVKCLST--TRHKKDVLLVAGDVAEKYD-------DFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~--------~~~~l~~l~~--~~~~~D~li~~GDi~~~~~-------~~~~~~~~l~~~~~~v~~V 114 (328)
|||+++||+|++... ...+++.+.. +..++|+||++||++|... .+..++..|++.+.||++|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I 80 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVL 80 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 799999999997421 1122332221 5679999999999999742 1234455566667899999
Q ss_pred CCCCCCCC
Q 042652 115 PGNHDLWC 122 (328)
Q Consensus 115 ~GNHD~~~ 122 (328)
+||||...
T Consensus 81 ~GNHD~~~ 88 (407)
T PRK10966 81 AGNHDSVA 88 (407)
T ss_pred cCCCCChh
Confidence 99999864
No 53
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.97 E-value=8.2e-10 Score=107.76 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=50.6
Q ss_pred cEEEEEeCCCCCC-cc-----cH-------HHHHHHhhcCCCCCEEEEcccccCCc----hhHHHHHHHHHhc---CCcE
Q 042652 52 LRVFVLSDLHTDY-SE-----NM-------TWVKCLSTTRHKKDVLLVAGDVAEKY----DDFVLTMSLLKDR---FQRV 111 (328)
Q Consensus 52 ~ri~~iSDlH~~~-~~-----~~-------~~l~~l~~~~~~~D~li~~GDi~~~~----~~~~~~~~~l~~~---~~~v 111 (328)
|||+|+||+|++. .. .. ..++.+ ...++|+||+|||++|.. .....+.+.++++ +.||
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a--~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv 78 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIA--KEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPV 78 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHH--HHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcE
Confidence 8999999999993 21 11 123333 567889999999999974 2334444555544 5899
Q ss_pred EEECCCCCCCCCC
Q 042652 112 LFVPGNHDLWCRG 124 (328)
Q Consensus 112 ~~V~GNHD~~~~~ 124 (328)
|+|+||||.....
T Consensus 79 ~~I~GNHD~~~~~ 91 (390)
T COG0420 79 VVIAGNHDSPSRL 91 (390)
T ss_pred EEecCCCCchhcc
Confidence 9999999987654
No 54
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.95 E-value=1.7e-09 Score=103.75 Aligned_cols=71 Identities=18% Similarity=0.346 Sum_probs=48.7
Q ss_pred cEEEEEeCCCCCCccc--------HHHHHHHhh--cCCCCCEEEEcccccCCch----hH----HH-HHHHHHhcCCcEE
Q 042652 52 LRVFVLSDLHTDYSEN--------MTWVKCLST--TRHKKDVLLVAGDVAEKYD----DF----VL-TMSLLKDRFQRVL 112 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~--------~~~l~~l~~--~~~~~D~li~~GDi~~~~~----~~----~~-~~~~l~~~~~~v~ 112 (328)
|||+++||+|++.... .+.++.+.. ...++|+||++||++|... .. .. +++.+.+.+.||+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 8999999999985321 122222211 5678999999999998741 11 11 2344555578999
Q ss_pred EECCCCCCCC
Q 042652 113 FVPGNHDLWC 122 (328)
Q Consensus 113 ~V~GNHD~~~ 122 (328)
+|+||||...
T Consensus 81 ~I~GNHD~~~ 90 (340)
T PHA02546 81 VLVGNHDMYY 90 (340)
T ss_pred EEccCCCccc
Confidence 9999999864
No 55
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.92 E-value=1.7e-09 Score=100.59 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=58.2
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
|++++|||+|++.....++++.+.. ..+.|.++++||+++.+.+..++++++.++..++++|.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~-~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDF-DPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCC-CCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhH
Confidence 7899999999998877777776621 3478999999999999988888999999887789999999996
No 56
>PHA02239 putative protein phosphatase
Probab=98.85 E-value=4.4e-09 Score=95.75 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=51.9
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc---CCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR---FQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~---~~~v~~V~GNHD~~ 121 (328)
||+++|||+|.......++++.+.......|.|+++||++|.+.....+++.+.++ ..++++|+||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 78999999998766556666666322223699999999999876556666665443 45799999999964
No 57
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=98.84 E-value=2.2e-07 Score=91.64 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=62.3
Q ss_pred eEE-EcCEEEeccCCCCCC-C----CCCc------ccccCCccCCcceeeecccCcccccccccccCCCCCCCCCCcHHH
Q 042652 152 PVV-IDGLGIIPLFSWYHE-S----FDRE------KDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFL 219 (328)
Q Consensus 152 ~~~-i~g~~iiG~~~w~~~-~----f~~e------~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l 219 (328)
.+. .++++||++++-... . ++.+ +++.........+++||| |.......++. ..+. ......+.+
T Consensus 295 SFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHP-p~s~g~~~~Dp-~~pg-~~~~n~~eL 371 (496)
T TIGR03767 295 TFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHT-SWSMVNELTDP-VDPG-EKRHLGTEL 371 (496)
T ss_pred EEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCC-Ccccccccccc-cccc-ccccCHHHH
Confidence 345 678899998774321 1 1110 112111112345789999 87532211110 0010 112344566
Q ss_pred HHHHHHhhcccCCCccEEEEcccccCCceEEC---CE----EEEe---ccc-cChhhhhcccCCCCCCcceEEe--cCCc
Q 042652 220 ELRIRSIHGAMGSTSACHVFGHTHFSWDAVLD---GI----RYVQ---APL-AYPRERKRRMNGGENQLPYCVY--SDGK 286 (328)
Q Consensus 220 ~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~---g~----~~v~---~~~-gy~~~~~~~~~~~~g~~~~~l~--~dg~ 286 (328)
.++|+++. +|.+|||||+|........ |+ -|.. .|+ .||+. ||.+.++ .||+
T Consensus 372 ldLL~~yp-----nV~aVfsGHvH~n~i~~~~~~~~~~p~~gfweI~TaSlvdfPq~----------~Ri~Ei~~n~dgt 436 (496)
T TIGR03767 372 VSLLLEHP-----NVLAWVNGHTHSNKITAHRRVEGVGKDKGFWEINTASHIDFPQQ----------GRIIELADNQDGT 436 (496)
T ss_pred HHHHhcCC-----CceEEEECCcCCCccccccCCCCCCCcCCeEEEeccccccCCCC----------ceEEEEEeCCCCc
Confidence 66666652 5889999999998854433 32 2322 232 35543 8988887 7776
Q ss_pred c
Q 042652 287 F 287 (328)
Q Consensus 287 ~ 287 (328)
+
T Consensus 437 ~ 437 (496)
T TIGR03767 437 V 437 (496)
T ss_pred E
Confidence 5
No 58
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.84 E-value=2.8e-08 Score=86.15 Aligned_cols=48 Identities=31% Similarity=0.408 Sum_probs=34.3
Q ss_pred cCCCCCEEEEcccccCCch-----hHHHHHHHHHhc---------CCcEEEECCCCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYD-----DFVLTMSLLKDR---------FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~-----~~~~~~~~l~~~---------~~~v~~V~GNHD~~~~~ 124 (328)
...+||.||++||+++... .+....+.+.+. ..++++|+||||.....
T Consensus 42 ~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~~~ 103 (171)
T cd07384 42 QRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGYGE 103 (171)
T ss_pred HhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCCCC
Confidence 5779999999999999752 233333333221 46899999999997643
No 59
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.81 E-value=1.2e-07 Score=86.73 Aligned_cols=69 Identities=22% Similarity=0.213 Sum_probs=47.1
Q ss_pred cEEEEEeCCCCCCc---------ccHHHHHHHhhcCCCCC-EEEEcccccCCchh-----HHHHHHHHHhcCCcEEEECC
Q 042652 52 LRVFVLSDLHTDYS---------ENMTWVKCLSTTRHKKD-VLLVAGDVAEKYDD-----FVLTMSLLKDRFQRVLFVPG 116 (328)
Q Consensus 52 ~ri~~iSDlH~~~~---------~~~~~l~~l~~~~~~~D-~li~~GDi~~~~~~-----~~~~~~~l~~~~~~v~~V~G 116 (328)
++|+++||+|.... +...+++.+ +..++| +++.+||+.+.... ....++.++..+ ..++++|
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~--~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g-~d~~~~G 77 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEE--RAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG-YDAVTIG 77 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHH--HhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC-CCEEeec
Confidence 58999999996541 123556666 445677 77899999986432 245667777664 3556789
Q ss_pred CCCCCCC
Q 042652 117 NHDLWCR 123 (328)
Q Consensus 117 NHD~~~~ 123 (328)
|||+..+
T Consensus 78 NHe~d~g 84 (252)
T cd00845 78 NHEFDYG 84 (252)
T ss_pred ccccccc
Confidence 9998654
No 60
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.80 E-value=6.9e-08 Score=85.11 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=33.1
Q ss_pred cCCCCCEEEEcccccCCch--hHHHHHH---HHHhc-----CCcEEEECCCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYD--DFVLTMS---LLKDR-----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~--~~~~~~~---~l~~~-----~~~v~~V~GNHD~~~~ 123 (328)
+..+||+||++||++|.+. ..++..+ -+.+. ..|+++|+||||....
T Consensus 39 ~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~ 95 (195)
T cd08166 39 NFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGE 95 (195)
T ss_pred hccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCC
Confidence 5678999999999999863 1222333 23222 4689999999998754
No 61
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.80 E-value=7.2e-08 Score=89.77 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=46.0
Q ss_pred cEEEEEeCCCCCCcc----------------cHHHHHHHhhcCCCCCEEEE-cccccCCch--hH---------HHHHHH
Q 042652 52 LRVFVLSDLHTDYSE----------------NMTWVKCLSTTRHKKDVLLV-AGDVAEKYD--DF---------VLTMSL 103 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~----------------~~~~l~~l~~~~~~~D~li~-~GDi~~~~~--~~---------~~~~~~ 103 (328)
++|+++||+|..... ...+++.+ +..++|+|++ +||+++... .+ ...++.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~--r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ 78 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKA--RAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAA 78 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHH--HhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHH
Confidence 479999999975321 12345555 4457888887 999997642 11 345677
Q ss_pred HHhcCCcEEEECCCCCCCCC
Q 042652 104 LKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 104 l~~~~~~v~~V~GNHD~~~~ 123 (328)
++.++. -++++||||+..+
T Consensus 79 ln~~g~-d~~~lGNHe~d~g 97 (277)
T cd07410 79 MNALGY-DAGTLGNHEFNYG 97 (277)
T ss_pred HHhcCC-CEEeecccCcccC
Confidence 777654 4667799998654
No 62
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=98.75 E-value=1.3e-08 Score=94.41 Aligned_cols=68 Identities=25% Similarity=0.386 Sum_probs=58.6
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
|++++|||+|+......++++.+.. ..+.|.++++||+++.+.+..++++++.++...+++|.||||.
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f-~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEF-DPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDL 68 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCc-CCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHH
Confidence 6799999999999887888887731 3467999999999999988888999999887678899999995
No 63
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=98.73 E-value=1.3e-08 Score=91.60 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=56.4
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
.|+++|||+|......+++++.+. ...+.|.|+++||++|.+.+..++++++.+. .+++|.||||..
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~-~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~--~~~~v~GNHE~~ 83 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCR-FDPWRDLLISVGDLIDRGPQSLRCLQLLEEH--WVRAVRGNHEQM 83 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcC-CCcccCEEEEcCcccCCCcCHHHHHHHHHcC--CceEeeCchHHH
Confidence 589999999999988778888773 1336899999999999998888999999864 478999999964
No 64
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.73 E-value=1.7e-08 Score=90.10 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=52.8
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
.||+++||+|......+++++.+. ...++|.++++||+++.+....++++.+.+ .++++|.||||...
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~-~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~ 68 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVG-FDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMA 68 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcC-CCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHH
Confidence 479999999987765555555542 134689999999999988766778888876 46899999999653
No 65
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=98.73 E-value=1.4e-08 Score=92.28 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhc-C-------CCCCEEEEcccccCCchhHHHHHHHHHhc--CCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTT-R-------HKKDVLLVAGDVAEKYDDFVLTMSLLKDR--FQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~-~-------~~~D~li~~GDi~~~~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 121 (328)
|||+++||+|.+....+++++.+... . .+.|.++++||+++.+....++++++.++ ...+++|.||||..
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHH
Confidence 68999999999998777777776321 1 14699999999999988778888888765 34689999999963
No 66
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=98.72 E-value=1.8e-08 Score=92.87 Aligned_cols=67 Identities=25% Similarity=0.354 Sum_probs=57.0
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
+++|||+|.+....+++++.+. ...+.|.++++||+++.+.+..++++++.++...+++|.||||..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~-~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKIN-FDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLH 67 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcC-CCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHH
Confidence 4789999999887777777763 134689999999999999888889999998877899999999964
No 67
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=98.63 E-value=4.1e-08 Score=89.98 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=54.4
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhc-------CCCCCEEEEcccccCCchhHHHHHHHHHhc--CCcEEEECCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTT-------RHKKDVLLVAGDVAEKYDDFVLTMSLLKDR--FQRVLFVPGNHDLW 121 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~-------~~~~D~li~~GDi~~~~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 121 (328)
||+++|||+|+......++++.+... ..+.|.+|+.||++|.+.+..++++++.++ ...+++|.||||..
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~ 79 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNK 79 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHH
Confidence 68999999999888766777665211 024589999999999987777788877654 34799999999953
No 68
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.59 E-value=5.6e-08 Score=86.93 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=52.4
Q ss_pred EEEeCCCCCCcccHHHHHHHhh------cCCCCCEEEEcccccCCchhHHHHHHHHHhc-------CCcEEEECCCCCCC
Q 042652 55 FVLSDLHTDYSENMTWVKCLST------TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR-------FQRVLFVPGNHDLW 121 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l~~l~~------~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~-------~~~v~~V~GNHD~~ 121 (328)
++|||+|.+.....++++.+.. ...+.|.|+++||+++.++...++++++.++ +.++++++||||..
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4799999998876677765421 0346899999999999987767777777654 35799999999965
Q ss_pred C
Q 042652 122 C 122 (328)
Q Consensus 122 ~ 122 (328)
.
T Consensus 81 ~ 81 (208)
T cd07425 81 N 81 (208)
T ss_pred H
Confidence 4
No 69
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=98.59 E-value=2.9e-07 Score=78.06 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=77.8
Q ss_pred EEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHH---hcCCcEEEECCCCCCCCCCCCCchhh
Q 042652 55 FVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLK---DRFQRVLFVPGNHDLWCRGEENDFPD 131 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~---~~~~~v~~V~GNHD~~~~~~~~~~~~ 131 (328)
+++.|.|.+.....+-++.+..+..++|++|++||+.....+...+.+++. +...|+|++-|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~ggn~~------------ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGGNNP------------ 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHHhcCCccCCCCEEEECCCCC------------
Confidence 467899988876555555554456789999999999876533234444443 33678999999996
Q ss_pred HHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCCCCC
Q 042652 132 SLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYPNLP 211 (328)
Q Consensus 132 ~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~~~~ 211 (328)
++ ..++||.+ |.....-.+. . .....
T Consensus 69 -------------------------~~--------------------------DILlTh~w-P~gi~~~~~~-~-~~~~~ 94 (150)
T cd07380 69 -------------------------GV--------------------------DILLTSEW-PKGISKLSKV-P-FEETL 94 (150)
T ss_pred -------------------------CC--------------------------CEEECCCC-chhhhhhCCC-c-ccccc
Confidence 11 12566777 6542110000 0 00113
Q ss_pred CCCCcHHHHHHHHHhhcccCCCccEEEEccccc
Q 042652 212 KIIGSDFLELRIRSIHGAMGSTSACHVFGHTHF 244 (328)
Q Consensus 212 ~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~ 244 (328)
...||..++++++.++|+ +|+|||-|.
T Consensus 95 ~~~GS~~i~~l~~~lkPr------Yhf~gh~~~ 121 (150)
T cd07380 95 LICGSDLIAELAKKLKPR------YHFAGLEGV 121 (150)
T ss_pred cCCCCHHHHHHHHHcCCC------eEeecCCCc
Confidence 577999999999999865 999999885
No 70
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.58 E-value=1.1e-07 Score=85.95 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=51.3
Q ss_pred cEEEEEeCCCCCCccc-------------HHHHHHHhh--cCCCCCEEEEcccccCCc---hhHHHHHHHHHhcCCcEEE
Q 042652 52 LRVFVLSDLHTDYSEN-------------MTWVKCLST--TRHKKDVLLVAGDVAEKY---DDFVLTMSLLKDRFQRVLF 113 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~-------------~~~l~~l~~--~~~~~D~li~~GDi~~~~---~~~~~~~~~l~~~~~~v~~ 113 (328)
-+.+++||+|++.... .+.++.+.. ...++|.||++||+.+.. .....+.+++++...++++
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~ 94 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLIL 94 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEE
Confidence 4689999999986321 123443332 456899999999999753 2355666778777779999
Q ss_pred ECCCCCCCC
Q 042652 114 VPGNHDLWC 122 (328)
Q Consensus 114 V~GNHD~~~ 122 (328)
|+||||...
T Consensus 95 V~GNHD~~~ 103 (225)
T TIGR00024 95 IRGNHDALI 103 (225)
T ss_pred ECCCCCCcc
Confidence 999999653
No 71
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.58 E-value=2.2e-06 Score=94.45 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=59.6
Q ss_pred cceeeeceeecC--CcccCCCCCCCcEEEEEeCCCCCCcc---cHHHHHHHhhcCCCCCEEEE-cccccCCch-----hH
Q 042652 29 YTTTRRPEILTS--SAAASSTSASGLRVFVLSDLHTDYSE---NMTWVKCLSTTRHKKDVLLV-AGDVAEKYD-----DF 97 (328)
Q Consensus 29 ~~~v~~~~i~~~--~~~~~~~~~~~~ri~~iSDlH~~~~~---~~~~l~~l~~~~~~~D~li~-~GDi~~~~~-----~~ 97 (328)
...+.++++..+ .+|+ ......++|+++||+|..... ...+++.+ +..++|+|++ +||++.... ..
T Consensus 637 ~~Gf~~~~i~l~~~~~~~-~~~~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~--r~~~~~~l~ld~GD~~~gs~~~~~~~g 713 (1163)
T PRK09419 637 TPGVGAYKLNFVDEAEPE-KKDNWELTILHTNDFHGHLDGAAKRVTKIKEV--KEENPNTILVDAGDVYQGSLYSNLLKG 713 (1163)
T ss_pred CCCeEEEEEecCCCcccc-cCCceEEEEEEEeecccCCCCHHHHHHHHHHH--HhhCCCeEEEecCCCCCCcchhhhcCC
Confidence 455667777665 6662 112235899999999965422 23456655 4557888877 999998642 12
Q ss_pred HHHHHHHHhcCCcEEEECCCCCCCCCC
Q 042652 98 VLTMSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 98 ~~~~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
...++.+..++. -++++|||||..+.
T Consensus 714 ~~~~~~ln~lg~-d~~~~GNHEfd~g~ 739 (1163)
T PRK09419 714 LPVLKMMKEMGY-DASTFGNHEFDWGP 739 (1163)
T ss_pred hHHHHHHhCcCC-CEEEecccccccCh
Confidence 456677766533 35589999997654
No 72
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.56 E-value=8.4e-08 Score=83.09 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=43.5
Q ss_pred EEEeCCCCCCccc-------------HHHHHHHhh--cCCCCCEEEEcccccCCch--hH--HHH--HHHHHhcCCcEEE
Q 042652 55 FVLSDLHTDYSEN-------------MTWVKCLST--TRHKKDVLLVAGDVAEKYD--DF--VLT--MSLLKDRFQRVLF 113 (328)
Q Consensus 55 ~~iSDlH~~~~~~-------------~~~l~~l~~--~~~~~D~li~~GDi~~~~~--~~--~~~--~~~l~~~~~~v~~ 113 (328)
+++||+|++.... ++.++.+.+ ...++|.||++||+++... .. ... ...+.....++++
T Consensus 1 l~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (172)
T cd07391 1 LVVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVIL 80 (172)
T ss_pred CEeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEE
Confidence 4799999987421 122333222 4678999999999997532 11 111 1222334679999
Q ss_pred ECCCCCCCC
Q 042652 114 VPGNHDLWC 122 (328)
Q Consensus 114 V~GNHD~~~ 122 (328)
|+||||...
T Consensus 81 i~GNHD~~~ 89 (172)
T cd07391 81 IRGNHDGGL 89 (172)
T ss_pred EcccCccch
Confidence 999999864
No 73
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=98.53 E-value=9.2e-07 Score=85.70 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=47.5
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhh--cCCCCCEEEEcccccCCc------hhHHHHHHHH----H-hcCCcEEEECC
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLST--TRHKKDVLLVAGDVAEKY------DDFVLTMSLL----K-DRFQRVLFVPG 116 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~--~~~~~D~li~~GDi~~~~------~~~~~~~~~l----~-~~~~~v~~V~G 116 (328)
..+|++++.|.=.+.......-+.+.. ...++|+|+.+||-+..+ +.++...+.+ + .+..|.+.|+|
T Consensus 25 ~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 25 AQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred CeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 468999999987654332222222321 467899999999987543 1233222222 1 14579999999
Q ss_pred CCCCCCCC
Q 042652 117 NHDLWCRG 124 (328)
Q Consensus 117 NHD~~~~~ 124 (328)
|||+.+..
T Consensus 105 NHDy~Gn~ 112 (394)
T PTZ00422 105 QADWDGNY 112 (394)
T ss_pred cccccCCc
Confidence 99986544
No 74
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=98.52 E-value=1.2e-07 Score=85.13 Aligned_cols=66 Identities=23% Similarity=0.350 Sum_probs=52.3
Q ss_pred EEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcC---CcEEEECCCCCCCC
Q 042652 55 FVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF---QRVLFVPGNHDLWC 122 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~---~~v~~V~GNHD~~~ 122 (328)
+++||+|.......++++.+ ...+.|.+|++||+++.+....++++.+..+. .++++|.||||...
T Consensus 1 ~~igDiHg~~~~l~~~l~~~--~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~ 69 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKI--GFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDML 69 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHh--CCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhh
Confidence 47999998876655666665 44678999999999998876677777777653 48999999999754
No 75
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=98.47 E-value=2.2e-07 Score=83.90 Aligned_cols=67 Identities=18% Similarity=0.294 Sum_probs=53.4
Q ss_pred EEEeCCCCCCcccHHHHHHHhhcC------CCCCEEEEcccccCCchhHHHHHHHHHhcC--CcEEEECCCCCCC
Q 042652 55 FVLSDLHTDYSENMTWVKCLSTTR------HKKDVLLVAGDVAEKYDDFVLTMSLLKDRF--QRVLFVPGNHDLW 121 (328)
Q Consensus 55 ~~iSDlH~~~~~~~~~l~~l~~~~------~~~D~li~~GDi~~~~~~~~~~~~~l~~~~--~~v~~V~GNHD~~ 121 (328)
++|||+|.......++++.+.... ...|.||+.||++|.+.+..++++.+.++. ..+++|.||||..
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ 76 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFN 76 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHH
Confidence 689999999887777777763211 246899999999999988888888888752 3699999999964
No 76
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.47 E-value=3.1e-06 Score=78.03 Aligned_cols=69 Identities=19% Similarity=0.145 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCC----------cccHHHHHHHhhcCCCCC-EEEEcccccCCch-----hHHHHHHHHHhcCCcEEEEC
Q 042652 52 LRVFVLSDLHTDY----------SENMTWVKCLSTTRHKKD-VLLVAGDVAEKYD-----DFVLTMSLLKDRFQRVLFVP 115 (328)
Q Consensus 52 ~ri~~iSDlH~~~----------~~~~~~l~~l~~~~~~~D-~li~~GDi~~~~~-----~~~~~~~~l~~~~~~v~~V~ 115 (328)
++|++++|+|.-. .+...+++.+ +..++| +++.+||+++... ..+..++.++.++. -++++
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~--r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~~-d~~~~ 77 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQL--RKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALGV-DLACF 77 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHH--HhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcCC-cEEee
Confidence 5899999999311 1123456655 344567 9999999997641 22455666766643 46789
Q ss_pred CCCCCCCC
Q 042652 116 GNHDLWCR 123 (328)
Q Consensus 116 GNHD~~~~ 123 (328)
||||+..+
T Consensus 78 GNHefd~g 85 (257)
T cd07406 78 GNHEFDFG 85 (257)
T ss_pred cccccccC
Confidence 99998654
No 77
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.45 E-value=4.8e-06 Score=78.10 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=43.8
Q ss_pred cEEEEEeCCCCCCcc--------------cHHHHHHHhhcCCCCCEEEEcccccCCchh---H---HHHHHHHHhcCCcE
Q 042652 52 LRVFVLSDLHTDYSE--------------NMTWVKCLSTTRHKKDVLLVAGDVAEKYDD---F---VLTMSLLKDRFQRV 111 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~--------------~~~~l~~l~~~~~~~D~li~~GDi~~~~~~---~---~~~~~~l~~~~~~v 111 (328)
++|+++||+|..... ...+++.++. +....+++.+||++..... + +..++.+...+.-+
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~-~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g~Da 79 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARA-QNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMGVDA 79 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHh-cCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhCCee
Confidence 579999999964321 1234555431 2233589999999865321 1 34567777665444
Q ss_pred EEECCCCCCCCC
Q 042652 112 LFVPGNHDLWCR 123 (328)
Q Consensus 112 ~~V~GNHD~~~~ 123 (328)
+++|||||..+
T Consensus 80 -~t~GNHefd~G 90 (288)
T cd07412 80 -SAVGNHEFDEG 90 (288)
T ss_pred -eeecccccccC
Confidence 66799998754
No 78
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.44 E-value=2e-06 Score=79.31 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=46.5
Q ss_pred cEEEEEeCCCCCCcc----------cHHHHHHHhhcCCCCCEEEEcccccCCch-----hHHHHHHHHHhcCCcEEEECC
Q 042652 52 LRVFVLSDLHTDYSE----------NMTWVKCLSTTRHKKDVLLVAGDVAEKYD-----DFVLTMSLLKDRFQRVLFVPG 116 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~----------~~~~l~~l~~~~~~~D~li~~GDi~~~~~-----~~~~~~~~l~~~~~~v~~V~G 116 (328)
++|+++||+|..... ...++++++. . +.++++.+||+++... ..+..++.+...+..+ +++|
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~-~-~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g~d~-~~~G 77 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNK-L-DNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVGYDA-VTPG 77 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHh-c-CCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcCCcE-Eccc
Confidence 589999999975421 1344555532 2 6789999999998642 1245567777665555 5679
Q ss_pred CCCCCCC
Q 042652 117 NHDLWCR 123 (328)
Q Consensus 117 NHD~~~~ 123 (328)
||||..+
T Consensus 78 NHefd~G 84 (257)
T cd07408 78 NHEFDYG 84 (257)
T ss_pred cccccCC
Confidence 9998654
No 79
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=98.43 E-value=3.7e-06 Score=82.39 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=36.0
Q ss_pred cCCCCCEEEEcccccCCc--hhHHHHHHHHHh--------------------------cC--CcEEEECCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKY--DDFVLTMSLLKD--------------------------RF--QRVLFVPGNHDLWC 122 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~--~~~~~~~~~l~~--------------------------~~--~~v~~V~GNHD~~~ 122 (328)
.....|++|-+||.+|.. +++.+++..|.. +. .|.|.|.||||...
T Consensus 96 ~~~p~df~is~GD~~nn~~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~v~GNHD~~~ 171 (492)
T TIGR03768 96 KRDRFDFGISLGDACNSTQYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQVLGNHDHFW 171 (492)
T ss_pred cCCCceEEEeccccccchhHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEEeecCCcccc
Confidence 466899999999999974 577888877751 12 58999999999543
No 80
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=98.40 E-value=2e-06 Score=84.62 Aligned_cols=77 Identities=22% Similarity=0.353 Sum_probs=52.9
Q ss_pred CCCcEEEEEeCCCCCCcccH------HH--HHHHhh--cCCCCCEEEEcccccCCch----hHHHHHHHHHh--------
Q 042652 49 ASGLRVFVLSDLHTDYSENM------TW--VKCLST--TRHKKDVLLVAGDVAEKYD----DFVLTMSLLKD-------- 106 (328)
Q Consensus 49 ~~~~ri~~iSDlH~~~~~~~------~~--l~~l~~--~~~~~D~li~~GDi~~~~~----~~~~~~~~l~~-------- 106 (328)
.+.|||++.||.|+++.+.. .| ++.|.. ...++|+|++.|||++... .+-.+++.|..
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~ 90 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV 90 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence 36799999999999986532 11 222211 5778999999999998742 23344444431
Q ss_pred ----------------------------cCCcEEEECCCCCCCCCCC
Q 042652 107 ----------------------------RFQRVLFVPGNHDLWCRGE 125 (328)
Q Consensus 107 ----------------------------~~~~v~~V~GNHD~~~~~~ 125 (328)
...|||-|.||||-..+..
T Consensus 91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG~~ 137 (646)
T KOG2310|consen 91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSGDG 137 (646)
T ss_pred eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcccc
Confidence 0248999999999887654
No 81
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=98.38 E-value=6.1e-06 Score=80.80 Aligned_cols=83 Identities=23% Similarity=0.381 Sum_probs=57.7
Q ss_pred cCCCCCCCcEEEEEeCCCCCCcc-----cHHHHHHHhh---cCCCCCEEEEcccccCCc----------------hhHHH
Q 042652 44 ASSTSASGLRVFVLSDLHTDYSE-----NMTWVKCLST---TRHKKDVLLVAGDVAEKY----------------DDFVL 99 (328)
Q Consensus 44 ~~~~~~~~~ri~~iSDlH~~~~~-----~~~~l~~l~~---~~~~~D~li~~GDi~~~~----------------~~~~~ 99 (328)
.++...++.+++++||+|.+..+ ..++++.|.. .....-++++|||+.|.. ++++.
T Consensus 218 ~~~~~~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~ 297 (481)
T COG1311 218 LNNTGDERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEE 297 (481)
T ss_pred CCCCCCcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHH
Confidence 33456678899999999997643 2344444421 234567999999999951 24667
Q ss_pred HHHHHHhc--CCcEEEECCCCCCCCCCCC
Q 042652 100 TMSLLKDR--FQRVLFVPGNHDLWCRGEE 126 (328)
Q Consensus 100 ~~~~l~~~--~~~v~~V~GNHD~~~~~~~ 126 (328)
+.++|... ...|+++|||||.-.....
T Consensus 298 ~A~~L~~vp~~I~v~i~PGnhDa~r~a~P 326 (481)
T COG1311 298 LAEFLDQVPEHIKVFIMPGNHDAVRQALP 326 (481)
T ss_pred HHHHHhhCCCCceEEEecCCCCccccccC
Confidence 77777765 3569999999997665543
No 82
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=98.32 E-value=9.7e-07 Score=82.28 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=52.4
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhc----CCCCCEEEEcccccCCchhHHHHHHHHHhcC-----CcEEEECCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTT----RHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF-----QRVLFVPGNHDLW 121 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~----~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~-----~~v~~V~GNHD~~ 121 (328)
++++|||+|......+++++.+... ....+.+|++||++|.+.+...++++|.... ..++++.||||..
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHH
Confidence 6999999999988766676666421 1246789999999999877777777776542 1478999999943
No 83
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=4.1e-06 Score=81.74 Aligned_cols=185 Identities=13% Similarity=0.102 Sum_probs=95.7
Q ss_pred CCCCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCc----hhHHHHHHHHHhc--CCcEEEECCCCCCC
Q 042652 48 SASGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKY----DDFVLTMSLLKDR--FQRVLFVPGNHDLW 121 (328)
Q Consensus 48 ~~~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~----~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 121 (328)
+....+++++.|+=....... .+.... ...++|+||+.|||+... .....+.+.+... ..|..++.||||..
T Consensus 144 ~~~~~~~~i~GDlG~~~~~~s-~~~~~~-~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vPymv~~GNHE~d 221 (452)
T KOG1378|consen 144 QDSPTRAAIFGDMGCTEPYTS-TLRNQE-ENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVPYMVCSGNHEID 221 (452)
T ss_pred ccCceeEEEEccccccccccc-hHhHHh-cccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCceEEeccccccc
Confidence 446799999999977554321 222222 234799999999998532 1333444444432 58999999999986
Q ss_pred CCCCCCchhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCC--------cccccCCcc--CCcceeeec
Q 042652 122 CRGEENDFPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDR--------EKDISGIRI--LPLEMVIHF 191 (328)
Q Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~--------e~~i~~~~~--~~~~lv~H~ 191 (328)
..... .|..-..+...=.+....-+-.-..+.+|++.|+++++-+++.+.+ ++++..... .|..++.=|
T Consensus 222 ~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~H 300 (452)
T KOG1378|consen 222 WPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGH 300 (452)
T ss_pred CCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHHHHHHHHHHHhcccCCCeEEEEec
Confidence 55321 1111111110000000000000136788999999998865543221 123333222 244455555
Q ss_pred ccCcccccccccccCCCCCCCCCCc-HHHHHHHHHhhcccCCCccEEEEcccccCC
Q 042652 192 LFSLQDLCPEKRMLFYPNLPKIIGS-DFLELRIRSIHGAMGSTSACHVFGHTHFSW 246 (328)
Q Consensus 192 p~P~~~~~~~~~~~~~~~~~~~~gs-~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~ 246 (328)
. |..-...... ..-|. +..+..||++.-+ .+|++++.||+|...
T Consensus 301 r-P~Y~S~~~~~--------~reG~~~~~~~~LE~l~~~--~~VDvvf~GHvH~YE 345 (452)
T KOG1378|consen 301 R-PMYCSSNDAH--------YREGEFESMREGLEPLFVK--YKVDVVFWGHVHRYE 345 (452)
T ss_pred c-cceecCCchh--------hccCcchhhHHHHHHHHHH--hceeEEEeccceehh
Confidence 5 5432111000 01111 1122345554443 259999999999855
No 84
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.28 E-value=1.4e-05 Score=73.93 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCCcc----------------------cHHHHHHHhhcCC-CCCEEE-EcccccCCch-----hHHHHHH
Q 042652 52 LRVFVLSDLHTDYSE----------------------NMTWVKCLSTTRH-KKDVLL-VAGDVAEKYD-----DFVLTMS 102 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~----------------------~~~~l~~l~~~~~-~~D~li-~~GDi~~~~~-----~~~~~~~ 102 (328)
++|++++|+|.-... ...+++.+ +.. .+|+|+ .+||+.+... .....++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~--~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~ 78 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRI--RAERNPNTLLLDGGDTWQGSGEALYTRGQAMVD 78 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHH--HHhcCCCeEEEeCCCccCCChHHhhcCChhHHH
Confidence 479999999985311 01234444 344 788775 5999997642 1245566
Q ss_pred HHHhcCCcEEEECCCCCCCCC
Q 042652 103 LLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 103 ~l~~~~~~v~~V~GNHD~~~~ 123 (328)
.+...+ +.++.||||+..+
T Consensus 79 ~l~~~g--~da~~GNHefd~g 97 (264)
T cd07411 79 ALNALG--VDAMVGHWEFTYG 97 (264)
T ss_pred HHHhhC--CeEEecccccccC
Confidence 666653 3333399998754
No 85
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.1e-05 Score=73.46 Aligned_cols=205 Identities=19% Similarity=0.142 Sum_probs=101.3
Q ss_pred cccCCCCCCCcEEEEEeCCCCCCcccHHHH----HHHhhcCCCCCEEEEcccccCC-c------hhHHHHHHHHH---hc
Q 042652 42 AAASSTSASGLRVFVLSDLHTDYSENMTWV----KCLSTTRHKKDVLLVAGDVAEK-Y------DDFVLTMSLLK---DR 107 (328)
Q Consensus 42 ~~~~~~~~~~~ri~~iSDlH~~~~~~~~~l----~~l~~~~~~~D~li~~GDi~~~-~------~~~~~~~~~l~---~~ 107 (328)
+..+++....++|++|.|.=....-+...+ ..|. ....+|+||-+||-+.. + +.++...+-+- ++
T Consensus 34 l~~p~~~dgslsflvvGDwGr~g~~nqs~va~qmg~ig-e~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSL 112 (336)
T KOG2679|consen 34 LYDPAKSDGSLSFLVVGDWGRRGSFNQSQVALQMGEIG-EKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSL 112 (336)
T ss_pred hcCCCCCCCceEEEEEcccccCCchhHHHHHHHHHhHH-HhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCccc
Confidence 333344456799999999875433222221 1121 45689999999996532 1 23443333332 23
Q ss_pred CCcEEEECCCCCCCCCCCCCchhhHHHHHHHHHhcccc-cccccceEEEcCEEEeccC--C---CCCCCCCCcccccC--
Q 042652 108 FQRVLFVPGNHDLWCRGEENDFPDSLEKLNKLLDACRG-LGVEINPVVIDGLGIIPLF--S---WYHESFDREKDISG-- 179 (328)
Q Consensus 108 ~~~v~~V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~-l~v~~~~~~i~g~~iiG~~--~---w~~~~f~~e~~i~~-- 179 (328)
.+|.+.|.||||+.+.-+. .....+.++..-. .|.+ +-+..+.+++.++.+.... . ..+..++.++...+
T Consensus 113 QkpWy~vlGNHDyrGnV~A-Qls~~l~~~d~RW-~c~rsf~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~ 190 (336)
T KOG2679|consen 113 QKPWYSVLGNHDYRGNVEA-QLSPVLRKIDKRW-ICPRSFYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVK 190 (336)
T ss_pred ccchhhhccCccccCchhh-hhhHHHHhhccce-ecccHHhhcceeeeeeccccccchhhheecccccccccccCChHHH
Confidence 5799999999999876432 1111122221000 1111 1112222333222211111 0 01111111110000
Q ss_pred -----CccC---------C-cceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEccccc
Q 042652 180 -----IRIL---------P-LEMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHF 244 (328)
Q Consensus 180 -----~~~~---------~-~~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~ 244 (328)
.+|. . ..++-||| -.. .+.+-....+.+.|.-+..++ +|++.++||-|.
T Consensus 191 ~~~~~l~~le~~L~~S~a~wkiVvGHh~-i~S-------------~~~HG~T~eL~~~LlPiL~~n--~VdlY~nGHDHc 254 (336)
T KOG2679|consen 191 YLRALLSWLEVALKASRAKWKIVVGHHP-IKS-------------AGHHGPTKELEKQLLPILEAN--GVDLYINGHDHC 254 (336)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEecccc-eeh-------------hhccCChHHHHHHHHHHHHhc--CCcEEEecchhh
Confidence 0011 0 12666888 221 123334466777777666553 699999999997
Q ss_pred CC--ceEECCEEEEeccccChhh
Q 042652 245 SW--DAVLDGIRYVQAPLAYPRE 265 (328)
Q Consensus 245 ~~--~~~~~g~~~v~~~~gy~~~ 265 (328)
-. ...-.++.|+....|.-.+
T Consensus 255 LQhis~~e~~iqf~tSGagSkaw 277 (336)
T KOG2679|consen 255 LQHISSPESGIQFVTSGAGSKAW 277 (336)
T ss_pred hhhccCCCCCeeEEeeCCccccc
Confidence 44 3346888998776664443
No 86
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=98.20 E-value=1.7e-06 Score=81.32 Aligned_cols=180 Identities=16% Similarity=0.144 Sum_probs=99.3
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhh-cCCCCCEEEEcccccCC-----------chhHHHHHHHHH---h---cCCcEEE
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLST-TRHKKDVLLVAGDVAEK-----------YDDFVLTMSLLK---D---RFQRVLF 113 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~-~~~~~D~li~~GDi~~~-----------~~~~~~~~~~l~---~---~~~~v~~ 113 (328)
|||++-.=.|+..+..-+-+..+.+ ...++|+||++||+-.- ...++..-.+.+ . ...+.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 7888888888877654333333332 34589999999998431 123333333333 2 2456899
Q ss_pred ECCCCCCCCCCCCCchhhHHHHHHHHHhcccccccc--cceEEEcCEEEeccCCCC-CCCCCC---------cccccC--
Q 042652 114 VPGNHDLWCRGEENDFPDSLEKLNKLLDACRGLGVE--INPVVIDGLGIIPLFSWY-HESFDR---------EKDISG-- 179 (328)
Q Consensus 114 V~GNHD~~~~~~~~~~~~~~~~~~~l~~~~~~l~v~--~~~~~i~g~~iiG~~~w~-~~~f~~---------e~~i~~-- 179 (328)
|-||||--. +.+.+..-+. .+.++..- ...+.++|++|.|+.|.+ ...|.+ ...++.
T Consensus 81 IGGNHEAsn------yL~eLpyGGw---VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRsiY 151 (456)
T KOG2863|consen 81 IGGNHEASN------YLQELPYGGW---VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRSIY 151 (456)
T ss_pred ecCchHHHH------HHHhcccCce---eccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhhhh
Confidence 999999421 1111111000 01111111 346789999999998843 222211 011110
Q ss_pred ------------CccCCcceeeecccCccc--------ccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEE
Q 042652 180 ------------IRILPLEMVIHFLFSLQD--------LCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVF 239 (328)
Q Consensus 180 ------------~~~~~~~lv~H~p~P~~~--------~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~ 239 (328)
...+-..+++|-= |... ++..|++.+-..-..-.||..+.++|++++|+ +|+.
T Consensus 152 HvR~~dV~~Lkqlk~piDIfLSHDW-P~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~------yWfs 224 (456)
T KOG2863|consen 152 HVRISDVAKLKQLKHPIDIFLSHDW-PRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQ------YWFS 224 (456)
T ss_pred hhhhhhhHHHHhhcCcceEEeecCC-CcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcc------hhhh
Confidence 0111122566776 6542 22222211111124568999999999999876 9999
Q ss_pred cccccCCc
Q 042652 240 GHTHFSWD 247 (328)
Q Consensus 240 GH~H~~~~ 247 (328)
.|.|.-..
T Consensus 225 AHLH~KFa 232 (456)
T KOG2863|consen 225 AHLHVKFA 232 (456)
T ss_pred hhHhhHHh
Confidence 99998653
No 87
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=98.19 E-value=4.7e-06 Score=78.20 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=55.5
Q ss_pred CcccCCCCCCCcEEEEEeCCCCCCcc---c----------------HHHHHHHhhcCCCCCEEEEcccccCCch--hHH-
Q 042652 41 SAAASSTSASGLRVFVLSDLHTDYSE---N----------------MTWVKCLSTTRHKKDVLLVAGDVAEKYD--DFV- 98 (328)
Q Consensus 41 ~~~~~~~~~~~~ri~~iSDlH~~~~~---~----------------~~~l~~l~~~~~~~D~li~~GDi~~~~~--~~~- 98 (328)
.++........+||+++||+|.+..+ . ..+++.+. ..++||+|+++||..+... +.+
T Consensus 43 ~~~lr~~~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL-~sE~PDlVVfTGD~i~g~~t~Da~~ 121 (379)
T KOG1432|consen 43 RLKLRFREDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVL-ASEKPDLVVFTGDNIFGHSTQDAAT 121 (379)
T ss_pred ceeeeecCCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHH-hccCCCEEEEeCCcccccccHhHHH
Confidence 33333455567999999999998751 1 13444432 5789999999999988732 222
Q ss_pred ---HHHHHHHhcCCcEEEECCCCCCCCCC
Q 042652 99 ---LTMSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 99 ---~~~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
+++.-.-+.+.|..++.||||-...-
T Consensus 122 sl~kAvaP~I~~~IPwA~~lGNHDdes~l 150 (379)
T KOG1432|consen 122 SLMKAVAPAIDRKIPWAAVLGNHDDESDL 150 (379)
T ss_pred HHHHHhhhHhhcCCCeEEEeccccccccc
Confidence 22222234578999999999976543
No 88
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.08 E-value=3.2e-05 Score=72.26 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=44.3
Q ss_pred cEEEEEeCCCCCCcc---------------------cHHHHHHHhhcCCCCCE-EEEcccccCCch-----hHHHHHHHH
Q 042652 52 LRVFVLSDLHTDYSE---------------------NMTWVKCLSTTRHKKDV-LLVAGDVAEKYD-----DFVLTMSLL 104 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~---------------------~~~~l~~l~~~~~~~D~-li~~GDi~~~~~-----~~~~~~~~l 104 (328)
++|++++|+|..... ...+++.+ +...++. ++.+||++.... .-...++.+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~--r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l 78 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKEL--RAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFM 78 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHH--HhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHH
Confidence 479999999974311 12345555 3345664 555999987632 224556777
Q ss_pred HhcCCcEEEECCCCCCCCCC
Q 042652 105 KDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 105 ~~~~~~v~~V~GNHD~~~~~ 124 (328)
+.++..+. ++|||||..+.
T Consensus 79 n~~g~D~~-~lGNHefd~G~ 97 (281)
T cd07409 79 NLLGYDAM-TLGNHEFDDGV 97 (281)
T ss_pred HhcCCCEE-EeccccccCCH
Confidence 77655544 56999997654
No 89
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.08 E-value=5.1e-05 Score=76.10 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=37.2
Q ss_pred HHHHHhhcCCCCCEEEEcccccCCc----------hhHHHHHHHHHhc--CCcEEEECCCCCCCC
Q 042652 70 WVKCLSTTRHKKDVLLVAGDVAEKY----------DDFVLTMSLLKDR--FQRVLFVPGNHDLWC 122 (328)
Q Consensus 70 ~l~~l~~~~~~~D~li~~GDi~~~~----------~~~~~~~~~l~~~--~~~v~~V~GNHD~~~ 122 (328)
.|+.++.+..++|.|+.+||+.... ..+..+.+.+.+. ..||+...||||..-
T Consensus 200 ~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 200 ALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHP 264 (577)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCc
Confidence 3555555666699999999998642 1234455666665 478999999999643
No 90
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=72.78 Aligned_cols=71 Identities=30% Similarity=0.459 Sum_probs=48.2
Q ss_pred CcEEEEEeCCCCCCccc-------------HHHHHHHhh--cCCCCCEEEEcccccCCch--------hHHHHHHHHHhc
Q 042652 51 GLRVFVLSDLHTDYSEN-------------MTWVKCLST--TRHKKDVLLVAGDVAEKYD--------DFVLTMSLLKDR 107 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~-------------~~~l~~l~~--~~~~~D~li~~GDi~~~~~--------~~~~~~~~l~~~ 107 (328)
.-+.+++||+|+++... .+.++.+.+ ...+|+.||+.||+-+... ....+++.+...
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ 98 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER 98 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence 45789999999987521 122222211 5789999999999988631 234444555544
Q ss_pred CCcEEEECCCCCCCCC
Q 042652 108 FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 108 ~~~v~~V~GNHD~~~~ 123 (328)
-+++|.||||-+..
T Consensus 99 --evi~i~GNHD~~i~ 112 (235)
T COG1407 99 --EVIIIRGNHDNGIE 112 (235)
T ss_pred --cEEEEeccCCCccc
Confidence 49999999998754
No 91
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.93 E-value=0.00016 Score=67.76 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=45.2
Q ss_pred cEEEEEeCCCCCCcc----------cHHHHHHHhhc---CCCCCEEEEcccccCCch-----hHHHHHHHHHhcCCcEEE
Q 042652 52 LRVFVLSDLHTDYSE----------NMTWVKCLSTT---RHKKDVLLVAGDVAEKYD-----DFVLTMSLLKDRFQRVLF 113 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~----------~~~~l~~l~~~---~~~~D~li~~GDi~~~~~-----~~~~~~~~l~~~~~~v~~ 113 (328)
++|++++|+|..... ...+++.+++. ....-+++-+||+..... .-...++.+..++.-+.
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g~Da~- 79 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAM- 79 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhCCcEE-
Confidence 479999999986422 12455555321 123458999999986531 12345566666655554
Q ss_pred ECCCCCCCCCC
Q 042652 114 VPGNHDLWCRG 124 (328)
Q Consensus 114 V~GNHD~~~~~ 124 (328)
++|||||..+.
T Consensus 80 ~~GNHEfD~G~ 90 (285)
T cd07405 80 AVGNHEFDNPL 90 (285)
T ss_pred eecccccccCH
Confidence 55999997653
No 92
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=97.89 E-value=2.3e-05 Score=72.90 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=52.9
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWC 122 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 122 (328)
++++++||+|+......++++.+ .....+.+++.||++|.+....+++..+..+ ...++.+.||||...
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~--~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~ 100 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLN--GPPPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRS 100 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHc--CCCCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHH
Confidence 56999999999887655566554 3456789999999999987666666665443 346999999999754
No 93
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=97.84 E-value=0.00012 Score=71.00 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEeCCCCCC----ccc----HHH-----HHH-Hh--hcCCCCCEEEEcccccCCc-----hhHHHHHHHHH
Q 042652 47 TSASGLRVFVLSDLHTDY----SEN----MTW-----VKC-LS--TTRHKKDVLLVAGDVAEKY-----DDFVLTMSLLK 105 (328)
Q Consensus 47 ~~~~~~ri~~iSDlH~~~----~~~----~~~-----l~~-l~--~~~~~~D~li~~GDi~~~~-----~~~~~~~~~l~ 105 (328)
.+.+..||+.++|.|+-- ... .++ ++. .. ....+||++++.||++|.+ +++.+-.+-++
T Consensus 44 ~~~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~Rfk 123 (410)
T KOG3662|consen 44 SNENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFK 123 (410)
T ss_pred CCCCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHH
Confidence 335679999999999833 111 111 111 10 0467999999999999954 34444444454
Q ss_pred hc-----CCcEEEECCCCCCCCCC
Q 042652 106 DR-----FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 106 ~~-----~~~v~~V~GNHD~~~~~ 124 (328)
+. ..+++.+|||||...+.
T Consensus 124 kIf~~k~~~~~~~i~GNhDIGf~~ 147 (410)
T KOG3662|consen 124 KIFGRKGNIKVIYIAGNHDIGFGN 147 (410)
T ss_pred HhhCCCCCCeeEEeCCcccccccc
Confidence 43 46899999999987665
No 94
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.78 E-value=0.00032 Score=71.74 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=46.1
Q ss_pred CCcEEEEEeCCCCCCccc----------HHHHHHHhhc---CCCCCEEEEcccccCCch-----hHHHHHHHHHhcCCcE
Q 042652 50 SGLRVFVLSDLHTDYSEN----------MTWVKCLSTT---RHKKDVLLVAGDVAEKYD-----DFVLTMSLLKDRFQRV 111 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~----------~~~l~~l~~~---~~~~D~li~~GDi~~~~~-----~~~~~~~~l~~~~~~v 111 (328)
..++|++++|+|.-.... ..+++.++.. ....-+++.+||++.... .-...++.+..++.-+
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g~Da 112 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIGYDA 112 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCCCCE
Confidence 468999999999865311 2345554321 123457899999987531 1134556676665444
Q ss_pred EEECCCCCCCCCC
Q 042652 112 LFVPGNHDLWCRG 124 (328)
Q Consensus 112 ~~V~GNHD~~~~~ 124 (328)
+++|||||..+.
T Consensus 113 -~tlGNHEFD~G~ 124 (551)
T PRK09558 113 -MAVGNHEFDNPL 124 (551)
T ss_pred -EcccccccCcCH
Confidence 445999997653
No 95
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=97.76 E-value=0.0013 Score=61.66 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=44.3
Q ss_pred CCcEEEEEeCCCCCCcc-------------cHHHHHHHhh--cCCCCC-EEEEcccccCCc-----h--hHHHHHHHHHh
Q 042652 50 SGLRVFVLSDLHTDYSE-------------NMTWVKCLST--TRHKKD-VLLVAGDVAEKY-----D--DFVLTMSLLKD 106 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~-------------~~~~l~~l~~--~~~~~D-~li~~GDi~~~~-----~--~~~~~~~~l~~ 106 (328)
..++|++++|+|..... ...+++.+++ ...+++ +++-+||+.+.. . .-....+.+..
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 35899999999974321 1233444432 233455 566799998853 1 22445666666
Q ss_pred cCCcEEEECCCCCCCCC
Q 042652 107 RFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 107 ~~~~v~~V~GNHD~~~~ 123 (328)
++. =.+++|||||...
T Consensus 84 mgy-Da~tlGNHEFd~g 99 (282)
T cd07407 84 MPY-DLLTIGNHELYNY 99 (282)
T ss_pred cCC-cEEeecccccCcc
Confidence 533 4677899999643
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.74 E-value=0.00042 Score=73.18 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=23.1
Q ss_pred CccEEEEcccccCCceEECCEEEEec
Q 042652 233 TSACHVFGHTHFSWDAVLDGIRYVQA 258 (328)
Q Consensus 233 ~v~~~i~GH~H~~~~~~~~g~~~v~~ 258 (328)
+++++|.||+|......++|+.++++
T Consensus 277 gID~IlgGHsH~~~~~~ingv~vvqa 302 (780)
T PRK09418 277 GVDAVLMGHSHTEVKDVFNGVPVVMP 302 (780)
T ss_pred CCCEEEECCCCCcccccCCCEEEEEc
Confidence 69999999999999888899888765
No 97
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=97.73 E-value=5.9e-05 Score=71.35 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=51.0
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLW 121 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~ 121 (328)
++++++|+|+......++++.. .....|.+++.||++|.+....+++..+..+ ...++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~--g~~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVG--GSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhc--CCCCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 5899999999887655555544 3455699999999999987666666666543 34699999999964
No 98
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.72 E-value=0.00025 Score=78.52 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=43.5
Q ss_pred CCcEEEEEeCCCCCCcc----------------cHHHHHHHhhcCCCCCEEEE-cccccCCch--h------------HH
Q 042652 50 SGLRVFVLSDLHTDYSE----------------NMTWVKCLSTTRHKKDVLLV-AGDVAEKYD--D------------FV 98 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~----------------~~~~l~~l~~~~~~~D~li~-~GDi~~~~~--~------------~~ 98 (328)
..++|+++||+|..... ...+++.++ ...++.|++ +||+..... + ..
T Consensus 40 ~~l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r--~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~ 117 (1163)
T PRK09419 40 VNIQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKAR--KENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTH 117 (1163)
T ss_pred eEEEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHH--HhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcC
Confidence 35899999999985421 123455553 345565555 999998642 1 12
Q ss_pred HHHHHHHhcCCcEEEECCCCCCCCC
Q 042652 99 LTMSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 99 ~~~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
..++.+..++. =.+++|||||..+
T Consensus 118 ~~i~~mN~lgy-Da~~lGNHEFd~G 141 (1163)
T PRK09419 118 PMIKAMNALGY-DAGTLGNHEFNYG 141 (1163)
T ss_pred HHHHHHhhcCc-cEEeecccccccC
Confidence 34455555433 3566899999654
No 99
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=97.68 E-value=6.8e-05 Score=70.24 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=50.7
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWC 122 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 122 (328)
.+.+++|+|+.+....++++.. .....+.+++.||++|.+....+++..+..+ ...++++.||||...
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~--~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 114 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVG--GDPPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQ 114 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHc--CCCCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHh
Confidence 4899999999887655555544 3445688999999999987666666655533 346999999999743
No 100
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=97.64 E-value=7.3e-05 Score=71.04 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=51.0
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCC-CCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRH-KKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~-~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~~~ 124 (328)
.++++++|+|+.+....++++.. ... ..+.+++.||++|.+..-.+++.+|..+ ...++++.||||.....
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~--g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~ 126 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKN--GLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMN 126 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHc--CCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhh
Confidence 47999999999887655555543 122 3478999999999986555566555433 34699999999976543
No 101
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=97.63 E-value=7.7e-05 Score=70.16 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=50.7
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWC 122 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 122 (328)
.+++++|+|+......++++.. .....+.+++.||++|.+....+++..+..+ ...++.+.||||...
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~~--~~~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~ 122 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEYG--GFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS 122 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHhc--CCCCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhh
Confidence 4899999999887655566554 3456678999999999886655665555433 346999999999854
No 102
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.59 E-value=0.0014 Score=68.04 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=44.3
Q ss_pred CcEEEEEeCCCCCCcc----------------cHHHHHHHhhcCCCCCEEEEcccccCCch--hH-----------HHHH
Q 042652 51 GLRVFVLSDLHTDYSE----------------NMTWVKCLSTTRHKKDVLLVAGDVAEKYD--DF-----------VLTM 101 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~----------------~~~~l~~l~~~~~~~D~li~~GDi~~~~~--~~-----------~~~~ 101 (328)
.+||++++|+|..... ...++++++. ....-+++-+||++.... .+ ...+
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~-e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~ 80 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARA-EVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVY 80 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHh-hCCCeEEEECCCcCCCccchhhhhhccccCCCcChHH
Confidence 4799999999986421 1134555432 223468999999988632 11 2345
Q ss_pred HHHHhcCCcEEEECCCCCCCCC
Q 042652 102 SLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 102 ~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
+.+..++. =..++|||||..+
T Consensus 81 ~~mN~lgy-Da~tlGNHEFd~G 101 (626)
T TIGR01390 81 KAMNLLKY-DVGNLGNHEFNYG 101 (626)
T ss_pred HHHhhcCc-cEEeccccccccc
Confidence 55655533 3577899998765
No 103
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=97.55 E-value=0.00012 Score=69.50 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~~ 123 (328)
++.+++|+|+.+....++++.. .....+.+|+.||++|.+....+++.++..+ ...++.+.||||....
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~--g~~~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~ 132 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYG--GYPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASI 132 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhc--CCCCcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhh
Confidence 4899999999877655555544 3445678999999999987666666666543 3469999999997543
No 104
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=97.55 E-value=0.00014 Score=68.69 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWC 122 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~ 122 (328)
.+.+++|+|+.+....++++.+ .....+.+++.||++|.+....+++..+..+ ...++.+.||||...
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~--~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 115 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEG--GDIPNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQ 115 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhc--CCCCCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHH
Confidence 3899999999887655555544 3345688999999999987666666666543 346999999999754
No 105
>PHA03008 hypothetical protein; Provisional
Probab=97.53 E-value=0.0083 Score=52.34 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=41.1
Q ss_pred ceeeecccCcccccccccccCCCCCCCCCCcHHHHHHHHHhhcccCCCccEEEEccccc---CCceEECCEEEEecc
Q 042652 186 EMVIHFLFSLQDLCPEKRMLFYPNLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHF---SWDAVLDGIRYVQAP 259 (328)
Q Consensus 186 ~lv~H~p~P~~~~~~~~~~~~~~~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~---~~~~~~~g~~~v~~~ 259 (328)
.++||.| |...+. ..+||+.|.+.+.+++|+ ++||||.-+ +.-+.+..+.+++.-
T Consensus 164 ILITHgP-P~GhLD------------~~vGC~~Ll~~I~rVKPK------yHVFGh~~~~~~p~~~~y~di~f~nsn 221 (234)
T PHA03008 164 ILITASP-PFAILD------------DDLACGDLFSKVIKIKPK------FHIFNGLTQFSHPNIFIYKDIIFINSN 221 (234)
T ss_pred EEEeCCC-Cccccc------------cccCcHHHHHHHHHhCCc------EEEeCCccccCCCcEEEecceEEEecc
Confidence 4899999 986432 257999999999988754 999999444 445677888887643
No 106
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.53 E-value=0.0039 Score=66.21 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=45.1
Q ss_pred CcEEEEEeCCCCCCcc----------------cHHHHHHHhhcCCCCCEEEEcccccCCch--hH------------HHH
Q 042652 51 GLRVFVLSDLHTDYSE----------------NMTWVKCLSTTRHKKDVLLVAGDVAEKYD--DF------------VLT 100 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~----------------~~~~l~~l~~~~~~~D~li~~GDi~~~~~--~~------------~~~ 100 (328)
.+||++++|+|..... ...+++.++. ....-+++.+||++.+.. .+ ...
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Ra-e~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKK-ENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHH-hCCCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 5899999999986321 0123555532 223358999999998631 11 135
Q ss_pred HHHHHhcCCcEEEECCCCCCCCCC
Q 042652 101 MSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 101 ~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
++.+..++. =...+|||||..+.
T Consensus 194 i~amN~LGy-DA~tLGNHEFDyG~ 216 (814)
T PRK11907 194 YAALEALGF-DAGTLGNHEFNYGL 216 (814)
T ss_pred HHHHhccCC-CEEEechhhcccCH
Confidence 566666543 35677999997653
No 107
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0053 Score=51.40 Aligned_cols=129 Identities=23% Similarity=0.159 Sum_probs=84.9
Q ss_pred cEEEEEeCCCCCCccc---HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCCCCCCc
Q 042652 52 LRVFVLSDLHTDYSEN---MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCRGEEND 128 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~---~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~~~~ 128 (328)
|-+++++|+|.-...+ .+|-+.+ .-.+...++.+|.++.. ++.++|+.+..-+-.|.|--|.....
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklL--vPgki~hilctGNlcs~-----e~~dylk~l~~dvhiVrGeFD~~~~y---- 69 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLL--VPGKIQHILCTGNLCSK-----ESYDYLKTLSSDVHIVRGEFDENLKY---- 69 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhcc--CCCceeEEEEeCCcchH-----HHHHHHHhhCCCcEEEecccCccccC----
Confidence 4589999999965432 3443333 45678899999998653 46777877766788999988754321
Q ss_pred hhhHHHHHHHHHhcccccccccceEEEcCEEEeccCCCCCCCCCCcccccCCccCCcceeeecccCcccccccccccCCC
Q 042652 129 FPDSLEKLNKLLDACRGLGVEINPVVIDGLGIIPLFSWYHESFDREKDISGIRILPLEMVIHFLFSLQDLCPEKRMLFYP 208 (328)
Q Consensus 129 ~~~~~~~~~~l~~~~~~l~v~~~~~~i~g~~iiG~~~w~~~~f~~e~~i~~~~~~~~~lv~H~p~P~~~~~~~~~~~~~~ 208 (328)
..+..+++|..+|--+ |.. -
T Consensus 70 -------------------P~~kvvtvGqfkIG~c--------------------------hGh-q-------------- 89 (183)
T KOG3325|consen 70 -------------------PENKVVTVGQFKIGLC--------------------------HGH-Q-------------- 89 (183)
T ss_pred -------------------CccceEEeccEEEEee--------------------------cCc-E--------------
Confidence 1234566777776221 111 0
Q ss_pred CCCCCCCcHHHHHHHHHhhcccCCCccEEEEcccccCCceEECCEEEEec
Q 042652 209 NLPKIIGSDFLELRIRSIHGAMGSTSACHVFGHTHFSWDAVLDGIRYVQA 258 (328)
Q Consensus 209 ~~~~~~gs~~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~~~~g~~~v~~ 258 (328)
-..+|......+|++-. +++..++||||....++.+|.-|+++
T Consensus 90 --ViP~gd~~sL~~LaRql-----dvDILl~G~Th~f~Aye~eg~ffvnP 132 (183)
T KOG3325|consen 90 --VIPWGDPESLALLARQL-----DVDILLTGHTHKFEAYEHEGKFFVNP 132 (183)
T ss_pred --eecCCCHHHHHHHHHhc-----CCcEEEeCCceeEEEEEeCCcEEeCC
Confidence 00124443344555432 58999999999999999999888776
No 108
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=97.52 E-value=0.00014 Score=70.41 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=50.5
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCC-CCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHK-KDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~-~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~~ 123 (328)
-++++++|+|+.......+++.. .... -+.+|+.||++|.+....+++..+..+ ...++++.||||....
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~--g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i 140 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDA--GFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFC 140 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHh--CCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccc
Confidence 35999999999887655555543 2222 356999999999987666676666543 3469999999997543
No 109
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=97.52 E-value=0.00014 Score=69.14 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=50.6
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCC
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLW 121 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~ 121 (328)
..++++++|+|+.+....++++.+. -...-|.+++.||++|.+....+++..+..+ ...++.+.||||..
T Consensus 59 ~~~~~VvGDIHG~~~dL~~ll~~~g-~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 59 GEKITVCGDTHGQFYDLLNIFELNG-LPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred CceeEEeecccCCHHHHHHHHHhcC-CCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH
Confidence 3579999999998876555554431 1223468999999999987666677666543 34689999999963
No 110
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=97.52 E-value=0.00016 Score=68.57 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=49.0
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhcC--CC----CCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTTR--HK----KDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLW 121 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~~--~~----~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~ 121 (328)
.+.+++|+|+.+....++++.+.... .. ..-+++.||++|.++...+++..+..+ ...++.+.||||..
T Consensus 49 ~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 49 PIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred CEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchH
Confidence 48899999998876666665542100 01 135889999999987777777776543 34699999999964
No 111
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=97.49 E-value=0.00014 Score=68.37 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=49.8
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHh----cCCcEEEECCCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKD----RFQRVLFVPGNHDLWC 122 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~----~~~~v~~V~GNHD~~~ 122 (328)
+.+++|+|+.+....++++.+ .....|-+++.||++|.+....+++..+.. ....++.+.||||...
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~--~~~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~ 124 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKC--GFPPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECAS 124 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHc--CCCCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHh
Confidence 789999999987666666655 344556788999999998766666655532 2446999999999654
No 112
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.36 E-value=0.0052 Score=64.03 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=45.1
Q ss_pred CCcEEEEEeCCCCCCcc----------------cHHHHHHHhhcCCCCCEEEEcccccCCch--hH-----------HHH
Q 042652 50 SGLRVFVLSDLHTDYSE----------------NMTWVKCLSTTRHKKDVLLVAGDVAEKYD--DF-----------VLT 100 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~----------------~~~~l~~l~~~~~~~D~li~~GDi~~~~~--~~-----------~~~ 100 (328)
..+||++++|+|..... ...++++++. ....-+++-+||+..... ++ ...
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~-e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~ 102 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARA-EAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPV 102 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHH-hCCCEEEEECCCcCCCchhhhhhhhccccCCCcchH
Confidence 46999999999975321 1134555532 223358999999998642 11 124
Q ss_pred HHHHHhcCCcEEEECCCCCCCCC
Q 042652 101 MSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 101 ~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
++.+..++. =..++|||||..+
T Consensus 103 i~amN~lgy-Da~tlGNHEFd~G 124 (649)
T PRK09420 103 YKAMNTLDY-DVGNLGNHEFNYG 124 (649)
T ss_pred HHHHHhcCC-cEEeccchhhhcC
Confidence 566665533 4667899998754
No 113
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=97.34 E-value=0.01 Score=55.10 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=52.5
Q ss_pred cEEEEEeCCCCCCcc--cHHHHHHHhhcCCCCCEEEEcccccCCc-hhHHHHHHHHHhcCCcEEEECCCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSE--NMTWVKCLSTTRHKKDVLLVAGDVAEKY-DDFVLTMSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~--~~~~l~~l~~~~~~~D~li~~GDi~~~~-~~~~~~~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
|||+++.|+=....+ ..+.|..++ ++.++|++|..||.+..+ .--.+..+.|.+.+.-++.+ |||.+...
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk-~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~GvDviT~-GNH~~Dkg 73 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLK-SKYQADLVIANGENTTHGKGLTLKIYEFLKQSGVNYITM-GNHTWFQK 73 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHH-HhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcCCCEEEc-cchhccCc
Confidence 899999999876543 245566654 466789999999998654 22367778888888888777 99998754
No 114
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.33 E-value=0.0037 Score=59.40 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCcc------cHHHHHHHhhc---CCCCCEEEEcccccCCchh-------------HHHHHHHHHhcCC
Q 042652 52 LRVFVLSDLHTDYSE------NMTWVKCLSTT---RHKKDVLLVAGDVAEKYDD-------------FVLTMSLLKDRFQ 109 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~------~~~~l~~l~~~---~~~~D~li~~GDi~~~~~~-------------~~~~~~~l~~~~~ 109 (328)
++|++++|+|..... ...+++.++.. ..+..+++.+||++....- -...++.+..++.
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~ 80 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV 80 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC
Confidence 479999999987532 12345555321 1334589999999875321 2344566665543
Q ss_pred cEEEECCCCCCCCCC
Q 042652 110 RVLFVPGNHDLWCRG 124 (328)
Q Consensus 110 ~v~~V~GNHD~~~~~ 124 (328)
- .+++|||||..+.
T Consensus 81 D-a~tlGNHEFD~G~ 94 (313)
T cd08162 81 Q-AIALGNHEFDLGT 94 (313)
T ss_pred c-EEeccccccccCH
Confidence 3 5667999987654
No 115
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=97.29 E-value=0.0081 Score=55.42 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCCccc--HHHHHHHhhcCCCCCEEEEcccccCCch-hHHHHHHHHHhcCCcEEEECCCCCCCCC
Q 042652 53 RVFVLSDLHTDYSEN--MTWVKCLSTTRHKKDVLLVAGDVAEKYD-DFVLTMSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 53 ri~~iSDlH~~~~~~--~~~l~~l~~~~~~~D~li~~GDi~~~~~-~~~~~~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
||+++.|+=...... .+.|..++ .+.++|++|..||.+..+. -.....+.|...+.-++.+ |||+|..+
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk-~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G~D~iTl-GNH~fD~g 72 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLK-KEYKIDFVIANGENAAGGKGITPKIAKELLSAGVDVITM-GNHTWDKK 72 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHH-HHCCCCEEEECCccccCCCCCCHHHHHHHHhcCCCEEEe-cccccCcc
Confidence 689999998866532 45566664 4667999999999987642 2356778888876666665 99998754
No 116
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.28 E-value=0.0015 Score=60.18 Aligned_cols=108 Identities=19% Similarity=0.155 Sum_probs=61.9
Q ss_pred EEEEeCCCCCCccc-----HHHHHHHhhc---------CCCCCEEEEcccccCCch----------------------hH
Q 042652 54 VFVLSDLHTDYSEN-----MTWVKCLSTT---------RHKKDVLLVAGDVAEKYD----------------------DF 97 (328)
Q Consensus 54 i~~iSDlH~~~~~~-----~~~l~~l~~~---------~~~~D~li~~GDi~~~~~----------------------~~ 97 (328)
|+++||+|++.... +.+++-|... ..+...||+|||..+... .+
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 78999999976531 2233334221 234457999999988421 13
Q ss_pred HHHHHHHHhc--CCcEEEECCCCCCCCCCCCCchh-hHH-HHHHHHHhcccccccccc--eEEEcCEEEeccCC
Q 042652 98 VLTMSLLKDR--FQRVLFVPGNHDLWCRGEENDFP-DSL-EKLNKLLDACRGLGVEIN--PVVIDGLGIIPLFS 165 (328)
Q Consensus 98 ~~~~~~l~~~--~~~v~~V~GNHD~~~~~~~~~~~-~~~-~~~~~l~~~~~~l~v~~~--~~~i~g~~iiG~~~ 165 (328)
..+-++|.++ ..||.++|||||.-.....+... ..+ .+... ...+...+. .+.++|++|+|..|
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~----~~~~~~vtNP~~~~i~g~~vLgtsG 151 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSN----YSTLNLVTNPYEFSIDGVRVLGTSG 151 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccc----cCCcEEeCCCeEEEECCEEEEEECC
Confidence 3334555554 46999999999976655433211 111 11100 011222233 46789999999876
No 117
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.21 E-value=0.01 Score=60.70 Aligned_cols=71 Identities=20% Similarity=0.187 Sum_probs=43.3
Q ss_pred cEEEEEeCCCCCCcc---------------------cHHHHHHHhhcCCCCCEEEEcccccCCch-----hHHHHHHHHH
Q 042652 52 LRVFVLSDLHTDYSE---------------------NMTWVKCLSTTRHKKDVLLVAGDVAEKYD-----DFVLTMSLLK 105 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~---------------------~~~~l~~l~~~~~~~D~li~~GDi~~~~~-----~~~~~~~~l~ 105 (328)
++|++++|+|..... ...+++.++. ....-+++.+||.+.... .-+..++.+.
T Consensus 1 ltILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~-~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N 79 (550)
T TIGR01530 1 LSIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRA-ESKNALVLHAGDAIIGTLYFTLFGGRADAALMN 79 (550)
T ss_pred CEEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHh-hCCCeEEEECCCCCCCccchhhcCCHHHHHHHh
Confidence 479999999975311 0123444432 223458889999987631 1133455555
Q ss_pred hcCCcEEEECCCCCCCCCC
Q 042652 106 DRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 106 ~~~~~v~~V~GNHD~~~~~ 124 (328)
.++ --++++|||||..+.
T Consensus 80 ~~g-~Da~~lGNHEFd~G~ 97 (550)
T TIGR01530 80 AAG-FDFFTLGNHEFDAGN 97 (550)
T ss_pred ccC-CCEEEeccccccCCH
Confidence 543 357778999997653
No 118
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.05 E-value=0.00095 Score=58.90 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=32.0
Q ss_pred cCCCCCEEEEcccccCCc----hh----HHHHHHHHHhc------------------CCcEEEECCCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKY----DD----FVLTMSLLKDR------------------FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~----~~----~~~~~~~l~~~------------------~~~v~~V~GNHD~~~~ 123 (328)
...+||.|++.||+++.+ ++ +..+.+.+-.. ..+++.|+||||....
T Consensus 41 ~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~~ 113 (193)
T cd08164 41 FWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGYG 113 (193)
T ss_pred HhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCCC
Confidence 467999999999999864 12 23333333111 2678999999998653
No 119
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=96.62 E-value=0.0093 Score=55.62 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=57.7
Q ss_pred ceeeeceeecCCcccCCCCCCCcEEEEEeCCCCCCcccH----HHHHHHhh---cCCCCCEEEEcccccCCc--------
Q 042652 30 TTTRRPEILTSSAAASSTSASGLRVFVLSDLHTDYSENM----TWVKCLST---TRHKKDVLLVAGDVAEKY-------- 94 (328)
Q Consensus 30 ~~v~~~~i~~~~~~~~~~~~~~~ri~~iSDlH~~~~~~~----~~l~~l~~---~~~~~D~li~~GDi~~~~-------- 94 (328)
..+++++|...+.+ ...+++++||+|++..... ++++.... ....|-++|++|+++...
T Consensus 12 ~~~~~~~~~~~~~~------~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~ 85 (291)
T PTZ00235 12 KEVEEYEIIVRKND------KRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFH 85 (291)
T ss_pred cccceEEEEEecCC------CceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCch
Confidence 45788898877666 5688999999999986533 33333321 123388999999998652
Q ss_pred hhHHHHHHH-----HHhc-----CCcEEEECCCCCCCCC
Q 042652 95 DDFVLTMSL-----LKDR-----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 95 ~~~~~~~~~-----l~~~-----~~~v~~V~GNHD~~~~ 123 (328)
..+.+..+. +++. ....++|||-.|-|..
T Consensus 86 ~~yk~~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw~s 124 (291)
T PTZ00235 86 KVYIKGFEKLSVMLISKFKLILEHCYLIFIPGINDPCAC 124 (291)
T ss_pred HHHHHHHHHHHHHHHHhChHHHhcCeEEEECCCCCCCcC
Confidence 112222222 3221 4579999999998764
No 120
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=96.56 E-value=0.005 Score=54.65 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=39.0
Q ss_pred EEEEeCCCCCCcc-cH----HHHHHHhhc-CCCCCEEEEcccccCCch-------------hHH----HHHHHHHhc--C
Q 042652 54 VFVLSDLHTDYSE-NM----TWVKCLSTT-RHKKDVLLVAGDVAEKYD-------------DFV----LTMSLLKDR--F 108 (328)
Q Consensus 54 i~~iSDlH~~~~~-~~----~~l~~l~~~-~~~~D~li~~GDi~~~~~-------------~~~----~~~~~l~~~--~ 108 (328)
|+++||+|++... .. ++++.+ . ..+++++|++|++++... ... .+.+.+.+. .
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~--~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 78 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGV--EDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPS 78 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCC--CHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhc--cccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccc
Confidence 6899999998432 22 333333 4 678999999999998521 111 222333333 4
Q ss_pred CcEEEECCCCCCCCC
Q 042652 109 QRVLFVPGNHDLWCR 123 (328)
Q Consensus 109 ~~v~~V~GNHD~~~~ 123 (328)
.+|++|||++|....
T Consensus 79 ~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 79 TQVVLVPGPNDPTSS 93 (209)
T ss_dssp SEEEEE--TTCTT-S
T ss_pred cEEEEeCCCcccccc
Confidence 689999999998766
No 121
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.044 Score=55.66 Aligned_cols=74 Identities=27% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCCcEEEEEeCCCCCCc---------------ccHHHHHHHhhcCCCCCEEEEcccccCCc------hhHHHHHHHHHhc
Q 042652 49 ASGLRVFVLSDLHTDYS---------------ENMTWVKCLSTTRHKKDVLLVAGDVAEKY------DDFVLTMSLLKDR 107 (328)
Q Consensus 49 ~~~~ri~~iSDlH~~~~---------------~~~~~l~~l~~~~~~~D~li~~GDi~~~~------~~~~~~~~~l~~~ 107 (328)
...++|++++|+|.... ....+++.++ .+.+..++|-+||+.+.. ..-...++.|..+
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~r-a~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m 102 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLR-AENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNAL 102 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHH-hhcCCeEEEeCCcccCCccccccccCCChHHHHHhhc
Confidence 34689999999998654 1123344443 233467899999999872 1235566777766
Q ss_pred CCcEEEECCCCCCCCCC
Q 042652 108 FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 108 ~~~v~~V~GNHD~~~~~ 124 (328)
+.- +...|||||..+.
T Consensus 103 ~yD-a~tiGNHEFd~g~ 118 (517)
T COG0737 103 GYD-AMTLGNHEFDYGL 118 (517)
T ss_pred CCc-EEeecccccccCH
Confidence 433 5566999998654
No 122
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=94.94 E-value=0.029 Score=53.67 Aligned_cols=71 Identities=18% Similarity=0.277 Sum_probs=48.4
Q ss_pred EEEEEeCCCCCCcccHHHHHHHhhc-CCCCCEEEEcccccCCchhHHHHHHHHH----hcCCcEEEECCCCCCCCCCC
Q 042652 53 RVFVLSDLHTDYSENMTWVKCLSTT-RHKKDVLLVAGDVAEKYDDFVLTMSLLK----DRFQRVLFVPGNHDLWCRGE 125 (328)
Q Consensus 53 ri~~iSDlH~~~~~~~~~l~~l~~~-~~~~D~li~~GDi~~~~~~~~~~~~~l~----~~~~~v~~V~GNHD~~~~~~ 125 (328)
-|.++.|+|+.+....++++.. . .+.-...++.||..|.+..-.+.+-+|- ..+..++...||||......
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~--g~~pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~ 135 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLL--GSFPPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINR 135 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhc--CCCCCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccc
Confidence 4899999999887644455443 2 3345679999999998754333332322 23567999999999876553
No 123
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=94.63 E-value=2 Score=38.85 Aligned_cols=27 Identities=22% Similarity=0.044 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCcEEEECCCCCCCCCC
Q 042652 98 VLTMSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 98 ~~~~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
...++.|+..+.-++.+.+||++..+.
T Consensus 67 ~~~~~~L~~~G~d~~tlaNNH~fD~G~ 93 (239)
T cd07381 67 PEVADALKAAGFDVVSLANNHTLDYGE 93 (239)
T ss_pred HHHHHHHHHhCCCEEEcccccccccch
Confidence 567788888877777777799987664
No 124
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=94.30 E-value=0.072 Score=48.71 Aligned_cols=65 Identities=28% Similarity=0.298 Sum_probs=46.7
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCC-EEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKD-VLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLW 121 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D-~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~ 121 (328)
+.+..|+|..+....+++ +.-...+| -.++.||.++.+....++++++-.+ ...|-.++||||..
T Consensus 62 vtvcGDvHGqf~dl~ELf---kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELF---KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhHHHHHHHH---HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHH
Confidence 789999999887543333 22334444 5889999999986666677666544 35799999999964
No 125
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=94.06 E-value=0.11 Score=46.50 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=42.5
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCC-EEEEcccccCCch-hHH---HHHHHHHhcCCcEEEECCCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKD-VLLVAGDVAEKYD-DFV---LTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D-~li~~GDi~~~~~-~~~---~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
+-+..|+|+.+-...++ ++....-|| -.|++||++|.+- .++ .++-+..+.+..+-.+.||||-..
T Consensus 48 VTvCGDIHGQFyDL~eL---FrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRq 118 (306)
T KOG0373|consen 48 VTVCGDIHGQFYDLLEL---FRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQ 118 (306)
T ss_pred eeEeeccchhHHHHHHH---HHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhh
Confidence 78899999987643333 332222233 5789999999862 222 223333344677999999999654
No 126
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=93.49 E-value=0.14 Score=46.66 Aligned_cols=69 Identities=20% Similarity=0.222 Sum_probs=44.8
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCch-hHHHHHHHH--Hh-cCCcEEEECCCCCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYD-DFVLTMSLL--KD-RFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~-~~~~~~~~l--~~-~~~~v~~V~GNHD~~~~~ 124 (328)
+.+..|+|+.+.....+++.- -...-.-.++.||++|.+- ..+.++-++ +- .+..+-.+.||||-..-+
T Consensus 45 vtvcGDIHGQf~Dllelf~ig--G~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqit 117 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIG--GDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQIT 117 (303)
T ss_pred cEEeecccchHHHHHHHHHhC--CCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhh
Confidence 788999999876533333321 2233456789999999873 444444333 22 256799999999976543
No 127
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=92.15 E-value=3.1 Score=37.63 Aligned_cols=27 Identities=22% Similarity=0.064 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCcEEEECCCCCCCCCC
Q 042652 98 VLTMSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 98 ~~~~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
...++.|+..+.-++.+.+||++..+.
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~ 89 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGE 89 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccch
Confidence 567788888877788887799997664
No 128
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=89.52 E-value=1.3 Score=43.67 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=52.0
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHh-h-cCCCCCEEEEcccccCCc------hhHHHHHHHHHhc---------CCcEE
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLS-T-TRHKKDVLLVAGDVAEKY------DDFVLTMSLLKDR---------FQRVL 112 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~-~-~~~~~D~li~~GDi~~~~------~~~~~~~~~l~~~---------~~~v~ 112 (328)
....++++||+|++.....+-++.|- . +...|-.+|++|-++... ..+...+++|+.. ....+
T Consensus 281 ~d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fI 360 (525)
T KOG3818|consen 281 TDTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFI 360 (525)
T ss_pred cCceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEE
Confidence 34679999999999865433333321 1 566788999999998742 2344555555532 24589
Q ss_pred EECCCCCCCCCCC
Q 042652 113 FVPGNHDLWCRGE 125 (328)
Q Consensus 113 ~V~GNHD~~~~~~ 125 (328)
+|||-.|.|....
T Consensus 361 FVPGP~Dp~~~~i 373 (525)
T KOG3818|consen 361 FVPGPNDPWVDNI 373 (525)
T ss_pred EecCCCCCCcCcc
Confidence 9999999988763
No 129
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=86.26 E-value=1.9 Score=39.38 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=48.8
Q ss_pred cEEEEEeCCCCCCccc--HHHHHHHhhcCCCCCEEEEcccccCCchhH-HHHHHHHHhcCCcEEEECCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSEN--MTWVKCLSTTRHKKDVLLVAGDVAEKYDDF-VLTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~--~~~l~~l~~~~~~~D~li~~GDi~~~~~~~-~~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
||++++.|+=....+. +..|..++ .+.++|++|+.|--+..+..+ ++..+.|.+.+.-|+ ..|||=+..
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk-~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G~dvi-T~GNH~wd~ 72 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLK-SKYKIDFVIVNGENAAGGFGITEKIYKELLEAGADVI-TLGNHTWDQ 72 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHH-HhhcCcEEEEcCccccCCcCCCHHHHHHHHHhCCCEE-ecccccccc
Confidence 8999999999876542 34455554 467899999999988765322 455566666666554 569998754
No 130
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=85.36 E-value=0.76 Score=44.04 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=44.5
Q ss_pred EEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHH--hc--CCcEEEECCCCCCCCCCC
Q 042652 54 VFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLK--DR--FQRVLFVPGNHDLWCRGE 125 (328)
Q Consensus 54 i~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~--~~--~~~v~~V~GNHD~~~~~~ 125 (328)
|-+..|||+.+-...++++.= -.+.-.-.++.||.+|.+.-..+++-.|- ++ ....+...||||.....+
T Consensus 90 iTVCGDIHGQf~DLmKLFEVG--G~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~ 163 (517)
T KOG0375|consen 90 ITVCGDIHGQFFDLMKLFEVG--GSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTE 163 (517)
T ss_pred eeEecccchHHHHHHHHHHcc--CCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHh
Confidence 789999999776544444321 34444567889999998632122332222 22 456889999999766543
No 131
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.72 E-value=1.5 Score=43.47 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=48.2
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHH---HhcCCcEEEECCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLL---KDRFQRVLFVPGNHD 119 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l---~~~~~~v~~V~GNHD 119 (328)
.||+++.|.-+.+.+.-+-++.+.++....|++|+.|+++....+..++.+.. .+...|+|+.-+|--
T Consensus 6 ~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~~~vPiptY~~g~~~~ 76 (528)
T KOG2476|consen 6 AKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGTKKVPIPTYFLGDNAN 76 (528)
T ss_pred ceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCCccCceeEEEecCCCC
Confidence 68999999998887655556666556778999999999998533333333333 334678888877763
No 132
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=82.90 E-value=0.81 Score=46.95 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=37.5
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCC-CCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL-WCRG 124 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~-~~~~ 124 (328)
+...+|.|-+.|||.|.++.....++.|... ..|=+-.||||. |.+.
T Consensus 181 qrL~VDhLHIvGDIyDRGp~pd~ImD~Lm~~-hsvDIQWGNHDIlWMGA 228 (640)
T PF06874_consen 181 QRLAVDHLHIVGDIYDRGPRPDKIMDRLMNY-HSVDIQWGNHDILWMGA 228 (640)
T ss_pred HHHhhhheeecccccCCCCChhHHHHHHhcC-CCccccccchHHHHHHH
Confidence 5678999999999999998878888888864 346667799994 5443
No 133
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=79.83 E-value=2.6 Score=37.28 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=21.6
Q ss_pred CccEEEEcccccCCceEECCEEEEec
Q 042652 233 TSACHVFGHTHFSWDAVLDGIRYVQA 258 (328)
Q Consensus 233 ~v~~~i~GH~H~~~~~~~~g~~~v~~ 258 (328)
+.++++|||||.......+++.++++
T Consensus 168 ~~~~iV~GHTh~~~~~~~~~~i~ID~ 193 (207)
T cd07424 168 GVDAVVHGHTPVKRPLRLGNVLYIDT 193 (207)
T ss_pred CCCEEEECCCCCCcceEECCEEEEEC
Confidence 35799999999999888888777665
No 134
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=74.08 E-value=2.5 Score=41.96 Aligned_cols=47 Identities=28% Similarity=0.324 Sum_probs=35.6
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCC-CCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL-WCRG 124 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~-~~~~ 124 (328)
+..-+|.+-+.|||.|.++.....++.|.+. ..|=+-.||||. |.+.
T Consensus 187 qrLvVDhLHiVGDIyDRGP~pd~Imd~L~~y-hsvDiQWGNHDilWmgA 234 (648)
T COG3855 187 QRLVVDHLHIVGDIYDRGPYPDKIMDTLINY-HSVDIQWGNHDILWMGA 234 (648)
T ss_pred HHHhhhheeeecccccCCCCchHHHHHHhhc-ccccccccCcceEEeec
Confidence 4667999999999999987667777777764 235556699994 5543
No 135
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=70.42 E-value=12 Score=37.18 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=19.0
Q ss_pred CCCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccC
Q 042652 49 ASGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAE 92 (328)
Q Consensus 49 ~~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~ 92 (328)
...+||++.|+.+..... ....+.+. +..++|++|++||...
T Consensus 103 ~~~~r~a~~SC~~~~~~~-~~~~~~~a-~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 103 PDPFRFAFGSCQNYEDGY-FPAYRRIA-ERDDPDFVLHLGDQIY 144 (453)
T ss_dssp ---EEEEEE----CCC----HHHHHHT-T-S--SEEEE-S-SS-
T ss_pred CCceEEEEECCCCcccCh-HHHHHhhh-ccCCCcEEEEeCCeee
Confidence 456999999999975432 33444552 2258999999999874
No 136
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=69.50 E-value=12 Score=33.93 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=40.8
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
+.++.+ .....|++++.|=..-..+....+++.+++...|++.-|||++.-.
T Consensus 18 ~~~~~~--~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~ 69 (223)
T TIGR01768 18 EIAKAA--AESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVS 69 (223)
T ss_pred HHHHHH--HhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccC
Confidence 445555 4567899999998866666777888888887899999999999544
No 137
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=69.48 E-value=36 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCcEEEECCCCCCCCCC
Q 042652 98 VLTMSLLKDRFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 98 ~~~~~~l~~~~~~v~~V~GNHD~~~~~ 124 (328)
...++.|+..+.-++-+..||-+..+.
T Consensus 65 ~~~~~~L~~~G~d~vslANNH~~D~G~ 91 (250)
T PF09587_consen 65 PEILDALKDAGFDVVSLANNHIFDYGE 91 (250)
T ss_pred HHHHHHHHHcCCCEEEecCCCCccccH
Confidence 456788888888888898999776553
No 138
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=63.00 E-value=20 Score=31.99 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=35.7
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhc-CCcEEEECCCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR-FQRVLFVPGNHDLWC 122 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~-~~~v~~V~GNHD~~~ 122 (328)
.....|.+++.|=..-..+....+++.+++. ..||+.-|||++.-.
T Consensus 21 ~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~ 67 (205)
T TIGR01769 21 KDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS 67 (205)
T ss_pred HhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC
Confidence 3456899999998644556677778888874 689999999999544
No 139
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=62.32 E-value=8.9 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=21.6
Q ss_pred CccEEEEcccccCCceEECCEEEEeccccC
Q 042652 233 TSACHVFGHTHFSWDAVLDGIRYVQAPLAY 262 (328)
Q Consensus 233 ~v~~~i~GH~H~~~~~~~~g~~~v~~~~gy 262 (328)
+.+.++|||||.......++...+..-..|
T Consensus 179 ~~~~vv~GHT~~~~~~~~~~~i~IDtGav~ 208 (218)
T PRK11439 179 GADHFWFGHTPLRHRVDIGNLHYIDTGAVF 208 (218)
T ss_pred CCCEEEECCccCCCccccCCEEEEECCCCC
Confidence 356899999999987777776666553333
No 140
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=60.64 E-value=24 Score=27.92 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=39.4
Q ss_pred cHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcC--CcEEEECCCCCC
Q 042652 67 NMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF--QRVLFVPGNHDL 120 (328)
Q Consensus 67 ~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~--~~v~~V~GNHD~ 120 (328)
.+++++.+ .+.++|+|.++.=..........+++.+++.. ...+++-|+|--
T Consensus 39 ~~~l~~~~--~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~ 92 (119)
T cd02067 39 PEEIVEAA--KEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVT 92 (119)
T ss_pred HHHHHHHH--HHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCC
Confidence 34667776 57799999999887776666777888888774 467899999843
No 141
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=59.98 E-value=23 Score=32.24 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=39.4
Q ss_pred HHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCCC
Q 042652 71 VKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 71 l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
++.+ .....|++++.|=..-..+....+++.+++...|++.-|||++.-..
T Consensus 25 ~~~~--~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~ 75 (232)
T PRK04169 25 LEAI--CESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGISP 75 (232)
T ss_pred HHHH--HhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccCc
Confidence 3444 35678999999988656666777888888867899999999995543
No 142
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=57.58 E-value=6.3 Score=33.21 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=25.4
Q ss_pred cccCCCCCCcceEEecCCcccc--------ccceeeehhhhhcC
Q 042652 268 RRMNGGENQLPYCVYSDGKFAD--------KLSHCYWSDYYATN 303 (328)
Q Consensus 268 ~~~~~~~g~~~~~l~~dg~~~~--------~~~~~~~~~~~~~~ 303 (328)
+++.-..||....+-.||+|.- +.-|-|||.||+..
T Consensus 43 ~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 43 RHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred hhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhcc
Confidence 3333367898888877777632 45678999999753
No 143
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=57.34 E-value=36 Score=25.86 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEEC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVP 115 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~ 115 (328)
+.++++ +....-.|++++|.... -...+...+.+.+.|+.+|+
T Consensus 20 qt~Kai--~kg~~~~v~iA~Da~~~--vv~~l~~lceek~Ip~v~V~ 62 (84)
T PRK13600 20 ETLKAL--KKDQVTSLIIAEDVEVY--LMTRVLSQINQKNIPVSFFK 62 (84)
T ss_pred HHHHHH--hcCCceEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEEC
Confidence 345666 56788999999999743 34556666777789999983
No 144
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=55.98 E-value=16 Score=32.86 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=22.0
Q ss_pred CccEEEEcccccCCceEECCEEEEeccccC
Q 042652 233 TSACHVFGHTHFSWDAVLDGIRYVQAPLAY 262 (328)
Q Consensus 233 ~v~~~i~GH~H~~~~~~~~g~~~v~~~~gy 262 (328)
+..++||||+|.......++...+..-..|
T Consensus 181 ~~~~vv~GHt~~~~~~~~~~~i~IDtGav~ 210 (234)
T cd07423 181 GDALVVYGHTPVPEPRWLNNTINIDTGCVF 210 (234)
T ss_pred CCeEEEECCCCCccceEeCCEEEEECCCCC
Confidence 456899999999987777776666553344
No 145
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=55.04 E-value=30 Score=31.52 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHH-hcCCcEEEECCCCCCCCC
Q 042652 68 MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLK-DRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 68 ~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~-~~~~~v~~V~GNHD~~~~ 123 (328)
.+.++.+ .....|.+++.|=..-..+....+++.++ +...|++.-||||+.-..
T Consensus 31 ~ei~~~~--~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~ 85 (240)
T COG1646 31 DEIAEAA--AEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISP 85 (240)
T ss_pred HHHHHHH--HHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCc
Confidence 3455555 45678999999988767677788888888 557899999999997554
No 146
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=46.84 E-value=29 Score=30.78 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcccCCCccEEEEcccccCCce--EECCE
Q 042652 218 FLELRIRSIHGAMGSTSACHVFGHTHFSWDA--VLDGI 253 (328)
Q Consensus 218 ~l~~~l~~~~~~~~~~v~~~i~GH~H~~~~~--~~~g~ 253 (328)
.+.+.++.+ +.+++++||||.+... ..+|.
T Consensus 158 ~~~~~l~~~------~~~~iv~GHTh~~~~~~~~~~g~ 189 (208)
T cd07425 158 HLDKVLERL------GAKRMVVGHTPQEGGIVTFCGGK 189 (208)
T ss_pred HHHHHHHHc------CCCeEEEcCeeeecCceEEECCE
Confidence 344555554 3579999999998765 44443
No 147
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=45.29 E-value=90 Score=28.79 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=35.2
Q ss_pred EEEeCCCCCCcc--cHHHHHHHhhcCCCCCEEEEcccccCCchhH-HHHHHHHHhcCCcEEEECCCCCCCC
Q 042652 55 FVLSDLHTDYSE--NMTWVKCLSTTRHKKDVLLVAGDVAEKYDDF-VLTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 55 ~~iSDlH~~~~~--~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~-~~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
++|.|+=..... ..+.|..|+ .+.++|+||..|.=+..+..+ .+..+.|.+.+.-|+ ..|||=+..
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~-~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~GvDvi-T~GNH~wdk 69 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELK-EEYGIDFVIANGENAAGGFGITPKIAEELFKAGVDVI-TMGNHIWDK 69 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHG-G--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT-SEE-E--TTTTSS
T ss_pred CeEEecCCHHHHHHHHHHHHHHH-hhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCCCEE-ecCcccccC
Confidence 356666554332 234455554 577999999999988765432 345566666665554 569998764
No 148
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.50 E-value=16 Score=36.57 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=43.8
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHH--hc--CCcEEEECCCCCC
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLK--DR--FQRVLFVPGNHDL 120 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~--~~--~~~v~~V~GNHD~ 120 (328)
...++.+.+|+|..+......++..- .....--.+..||+.+.+..-.+....+. ++ ...+|...|||+-
T Consensus 212 ~d~~~sv~gd~hGqfydl~nif~l~g-~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es 285 (476)
T KOG0376|consen 212 GDVKISVCGDTHGQFYDLLNIFELNG-LPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHES 285 (476)
T ss_pred CCceEEecCCccccccchhhhHhhcC-CCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccc
Confidence 56889999999998765544444331 12233457889999998643222222221 22 3469999999974
No 149
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=42.76 E-value=57 Score=26.11 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc-C-CcEEEECCC
Q 042652 68 MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR-F-QRVLFVPGN 117 (328)
Q Consensus 68 ~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~-~-~~v~~V~GN 117 (328)
+++++.+ .+.++|+|++++-..........+++.|++. . ...+++-|+
T Consensus 40 e~~~~~a--~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 40 EEIVEAA--IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHH--HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 4566666 5679999999998876666777888888876 2 456788887
No 150
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=38.67 E-value=50 Score=34.04 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=42.9
Q ss_pred CCcEEEEEeCCCCCCc------cc-------HHHHHHHhh--cCCCCCE-EEEcccccCCc-------hhHHHHHHHHHh
Q 042652 50 SGLRVFVLSDLHTDYS------EN-------MTWVKCLST--TRHKKDV-LLVAGDVAEKY-------DDFVLTMSLLKD 106 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~------~~-------~~~l~~l~~--~~~~~D~-li~~GDi~~~~-------~~~~~~~~~l~~ 106 (328)
..+++.+.||+|.... +. .++...++. ....+|+ ++-+||.-+.. ...+..-.+++-
T Consensus 41 ~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~~~ 120 (602)
T KOG4419|consen 41 GQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADRKGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLFKM 120 (602)
T ss_pred ccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhccCCCEEEEecccccCCceeeeccCCchHHHHHHHhc
Confidence 4689999999998543 11 122222211 3456665 55689987752 123444444443
Q ss_pred cCCcEEEECCCCCCCCCC
Q 042652 107 RFQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 107 ~~~~v~~V~GNHD~~~~~ 124 (328)
... =..+.||||++...
T Consensus 121 ~~y-D~l~lGNHEl~~~~ 137 (602)
T KOG4419|consen 121 MPY-DILTLGNHELYQAN 137 (602)
T ss_pred Ccc-chhhhcchhhhhhh
Confidence 322 45677999998763
No 151
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=38.13 E-value=72 Score=28.99 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc-CCcEEEECCCCCCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR-FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~-~~~v~~V~GNHD~~~~ 123 (328)
+.++.+ .....|++++.|=. ....++.+++.+++. ..|++.-|||.+--..
T Consensus 23 ~~~~~~--~~~gtDai~VGGS~--~~~~~d~vv~~ik~~~~lPvilfPg~~~~vs~ 74 (230)
T PF01884_consen 23 EALEAA--CESGTDAIIVGGSD--TGVTLDNVVALIKRVTDLPVILFPGSPSQVSP 74 (230)
T ss_dssp HHHHHH--HCTT-SEEEEE-ST--HCHHHHHHHHHHHHHSSS-EEEETSTCCG--T
T ss_pred HHHHHH--HhcCCCEEEECCCC--CccchHHHHHHHHhcCCCCEEEeCCChhhcCc
Confidence 445555 46789999999988 333455666666664 7899999999996543
No 152
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=37.78 E-value=91 Score=24.86 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=30.2
Q ss_pred HHHHHHHhhcC-CCCCEEEEcccccCCchhHHHHHHHHHhcCC-cEEEECCCC
Q 042652 68 MTWVKCLSTTR-HKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQ-RVLFVPGNH 118 (328)
Q Consensus 68 ~~~l~~l~~~~-~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~-~v~~V~GNH 118 (328)
+..++.+ .. .++|+|.++. ++........+.+.+++... ..+++-|.|
T Consensus 28 ~~~~~~~--~~~~~pdiv~~S~-~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 28 DDIVEDI--KELLKPDVVGISL-MTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHH--HHhcCCCEEEEee-ccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 4455655 33 7899999997 43333455667777777643 455555655
No 153
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=37.18 E-value=56 Score=25.75 Aligned_cols=67 Identities=10% Similarity=0.287 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCC--CCc----------cc---HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCc-EEE
Q 042652 50 SGLRVFVLSDLHT--DYS----------EN---MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQR-VLF 113 (328)
Q Consensus 50 ~~~ri~~iSDlH~--~~~----------~~---~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~-v~~ 113 (328)
+++||++|+|-=. ++. .. .+.++.+ ...+..+|+++=++.+..+ ..++..++...| ++.
T Consensus 2 ~~~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~~l--~~~d~gII~Ite~~a~~i~---~~i~~~~~~~~P~Il~ 76 (104)
T PRK01395 2 TMYKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLRKL--AMEDYGIIYITEQIAADIP---ETIERYDNQVLPAIIL 76 (104)
T ss_pred cceeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHHHH--hcCCcEEEEEcHHHHHHhH---HHHHHhcCCCCCEEEE
Confidence 4578899988211 110 11 2334444 4567888999888876542 333444443445 789
Q ss_pred ECCCCCCC
Q 042652 114 VPGNHDLW 121 (328)
Q Consensus 114 V~GNHD~~ 121 (328)
+|++|--.
T Consensus 77 IP~~~g~~ 84 (104)
T PRK01395 77 IPSNQGSL 84 (104)
T ss_pred eCCCCCCc
Confidence 99988754
No 154
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=36.34 E-value=81 Score=25.87 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcC--CcEEEECCCC
Q 042652 68 MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF--QRVLFVPGNH 118 (328)
Q Consensus 68 ~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~--~~v~~V~GNH 118 (328)
+++++.. .+.++|++.+++=..........+++.|++.. ...+++-||-
T Consensus 43 e~~v~aa--~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 43 EEIARQA--VEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHH--HHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4566666 56799999999988877777788888887763 3457776765
No 155
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=36.00 E-value=1.2e+02 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=25.1
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPG 116 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~G 116 (328)
...+||++|..+.... ....+.|++.+.|++++..
T Consensus 66 l~l~PDlii~~~~~~~-----~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 66 VALKPDLVILYGGFQA-----QTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred hccCCCEEEEecCCCc-----hhHHHHHHHcCCCEEEeCC
Confidence 4679999988654321 1466778888889999964
No 156
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=35.88 E-value=1.9e+02 Score=26.96 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=33.1
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccC------CchhHHHHHHHHHh
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAE------KYDDFVLTMSLLKD 106 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~------~~~~~~~~~~~l~~ 106 (328)
+.+|++.||+.+-.. ...++.+ ...+||++|+.|=.+. ..+.++..++-|..
T Consensus 176 ~~~i~faSDvqGp~~--~~~l~~i--~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ 233 (304)
T COG2248 176 KSSIVFASDVQGPIN--DEALEFI--LEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLER 233 (304)
T ss_pred CeEEEEcccccCCCc--cHHHHHH--HhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHH
Confidence 357899999996432 1233434 4568999999999883 22445555554444
No 157
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.30 E-value=85 Score=31.57 Aligned_cols=49 Identities=16% Similarity=0.331 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchh-HHHHHHHHHhc--CCcEEEECCCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDD-FVLTMSLLKDR--FQRVLFVPGNHDL 120 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~-~~~~~~~l~~~--~~~v~~V~GNHD~ 120 (328)
.-++.| ...+||+|+++|-.-.+.++ ...-.+.|.+. ..||+| .||-|.
T Consensus 111 ~~l~~I--~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIy-AGN~~a 162 (463)
T TIGR01319 111 KDIEAI--EESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIV-AGNKDI 162 (463)
T ss_pred HHHHHH--hhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEE-eCCHHH
Confidence 346666 46799999999987544433 24445666665 467544 599873
No 158
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=33.10 E-value=1.1e+02 Score=23.85 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNH 118 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNH 118 (328)
..++.+ +..++-+||+|.|.... ....+.........|++...|+-
T Consensus 23 ~v~kai--~~gkaklViiA~D~~~~--~~~~i~~~c~~~~Ip~~~~~~tk 68 (99)
T PRK01018 23 RTIKAI--KLGKAKLVIVASNCPKD--IKEDIEYYAKLSGIPVYEYEGSS 68 (99)
T ss_pred HHHHHH--HcCCceEEEEeCCCCHH--HHHHHHHHHHHcCCCEEEECCCH
Confidence 345666 56778999999997442 22444455566688987765543
No 159
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.82 E-value=73 Score=23.86 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=31.8
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHD 119 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD 119 (328)
..++++ +..+.-+||+|.|.... ....+.......+.|++.+.-+.|
T Consensus 18 ~v~kai--~~gkaklViiA~D~~~~--~~~~i~~~c~~~~Vp~~~~~s~~e 64 (82)
T PRK13602 18 QTVKAL--KRGSVKEVVVAEDADPR--LTEKVEALANEKGVPVSKVDSMKK 64 (82)
T ss_pred HHHHHH--HcCCeeEEEEECCCCHH--HHHHHHHHHHHcCCCEEEECCHHH
Confidence 445666 56788999999999764 223444555666889988753333
No 160
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.08 E-value=1.2e+02 Score=26.90 Aligned_cols=62 Identities=13% Similarity=0.082 Sum_probs=36.3
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEEC
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVP 115 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~ 115 (328)
++.+++ .+...+.....+.++.+ ...++|.+|+.+=..+........++.+.+.+.|++++-
T Consensus 29 g~~~~~-~~~~~~~~~~~~~i~~l--~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~ 90 (273)
T cd06292 29 GYTVLL-CNTYRGGVSEADYVEDL--LARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVN 90 (273)
T ss_pred CCEEEE-EeCCCChHHHHHHHHHH--HHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEc
Confidence 455543 33333333334556666 466899999987332332233455666777788998884
No 161
>KOG2232 consensus Ceramidases [Signal transduction mechanisms]
Probab=31.80 E-value=56 Score=33.16 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=36.8
Q ss_pred HHHHHHhhcccCC---CccEEEEc-ccccCCceEECCEEEEeccccChhh
Q 042652 220 ELRIRSIHGAMGS---TSACHVFG-HTHFSWDAVLDGIRYVQAPLAYPRE 265 (328)
Q Consensus 220 ~~~l~~~~~~~~~---~v~~~i~G-H~H~~~~~~~~g~~~v~~~~gy~~~ 265 (328)
.+.|++++.++|. .-.+.|+| |||..-+..+.-+.|+..++|+.++
T Consensus 98 leVi~RLqarYG~lY~~~NVaiSGtHTHagPgGylqy~~y~vtslGFv~Q 147 (734)
T KOG2232|consen 98 LEVIERLQARYGNLYTEDNVAISGTHTHAGPGGYLQYVLYIVTSLGFVRQ 147 (734)
T ss_pred HHHHHHHHHhhcccccccceeEecccccCCCcceeeeeeeeehhcccchH
Confidence 4677888777653 34577887 9999999888889999999998774
No 162
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=29.88 E-value=91 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCCCEEEEcccccCCchhHHHHHHHHHhcC--CcEEEECCCCCCCC
Q 042652 79 HKKDVLLVAGDVAEKYDDFVLTMSLLKDRF--QRVLFVPGNHDLWC 122 (328)
Q Consensus 79 ~~~D~li~~GDi~~~~~~~~~~~~~l~~~~--~~v~~V~GNHD~~~ 122 (328)
...|++++.|=..-. ...+.+++.+++.. .|++.-|||++.-.
T Consensus 24 ~gtdai~vGGS~~v~-~~~~~~~~~ik~~~~~~Pvilfp~~~~~i~ 68 (219)
T cd02812 24 SGTDAIMVGGSDGVS-STLDNVVRLIKRIRRPVPVILFPSNPEAVS 68 (219)
T ss_pred cCCCEEEECCccchh-hhHHHHHHHHHHhcCCCCEEEeCCCccccC
Confidence 568999999987543 55566777776653 89999999999543
No 163
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=29.74 E-value=1.2e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=23.7
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCc-EEEECC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQR-VLFVPG 116 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~-v~~V~G 116 (328)
...+..+++++-++.+.-+ +...+.+.+...| ++.+||
T Consensus 41 ~~~d~gII~Ite~~~~~i~--e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 41 EDDDVGILVMHDDDLEKLP--RRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred hCCCEEEEEEehhHhHhhH--HHHHHHHhcCCCCEEEEECC
Confidence 3567889999999876542 2222334445556 566776
No 164
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=29.38 E-value=1.2e+02 Score=29.33 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=35.9
Q ss_pred CCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCC
Q 042652 78 RHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLW 121 (328)
Q Consensus 78 ~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~ 121 (328)
...+|.|+++=+++....++..+++...+.+..|++++.+|+-.
T Consensus 291 ~GAVetLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e~G 334 (351)
T TIGR00111 291 YGAIEYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHELG 334 (351)
T ss_pred cCCceEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccH
Confidence 45779999999996444557778888888899999999999964
No 165
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=28.79 E-value=91 Score=31.73 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=40.2
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCCCC
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDLWC 122 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~ 122 (328)
+.++++++|+=.+.-.-.+ +.....++|+||+-|+-+-.. .. ..||+||+|..++..
T Consensus 81 ~~~v~IlaDtsYGaCCVDe----vaA~hv~aD~iVHyGhsCLsp---------~~--~lPviYVf~~~~~d~ 137 (496)
T TIGR00272 81 KIKFWVLADTAYSSCCVDE----VAAEHVHAEAVVHFGDACLSA---------IQ--NLPVVYVFGTPPIDL 137 (496)
T ss_pred CceEEEEeCCcccccccCH----HHHhhcCCCEEEEeCCCCCCC---------CC--CCCEEEEeccCCCCH
Confidence 5899999999988765322 222455899999999976431 01 248899988877654
No 166
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=28.58 E-value=1.1e+02 Score=25.84 Aligned_cols=43 Identities=19% Similarity=0.126 Sum_probs=31.4
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
...++|++++.-|-++-..+ ..+...+.+++.|++++.---|.
T Consensus 75 ~~~~~D~ii~VvDa~~l~r~-l~l~~ql~e~g~P~vvvlN~~D~ 117 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATNLERN-LYLTLQLLELGIPVVVVLNKMDE 117 (156)
T ss_dssp HHTSSSEEEEEEEGGGHHHH-HHHHHHHHHTTSSEEEEEETHHH
T ss_pred hhcCCCEEEEECCCCCHHHH-HHHHHHHHHcCCCEEEEEeCHHH
Confidence 35689999999999875433 35667777788999888544443
No 167
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=27.30 E-value=1.9e+02 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHH-hcCCcEEEECCCC
Q 042652 70 WVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLK-DRFQRVLFVPGNH 118 (328)
Q Consensus 70 ~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~-~~~~~v~~V~GNH 118 (328)
.++.+ ...+..+|++|.|.. ..++...+..+. +.+.|+++|+-=.
T Consensus 35 ~~Kai--~~g~a~LVviA~Dv~--P~~~~~~l~~lc~~~~vpyv~V~sk~ 80 (116)
T COG1358 35 VTKAI--ERGKAKLVVIAEDVS--PEELVKHLPALCEEKNVPYVYVGSKK 80 (116)
T ss_pred HHHHH--HcCCCcEEEEecCCC--HHHHHHHHHHHHHhcCCCEEEeCCHH
Confidence 34555 567899999999995 223444555554 4689999985433
No 168
>PRK06683 hypothetical protein; Provisional
Probab=27.18 E-value=1.4e+02 Score=22.34 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEEC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVP 115 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~ 115 (328)
..++++ +..++-+||+|.|..+.. ...+.........|++.+.
T Consensus 18 ~v~kai--k~gkaklViiA~Da~~~~--~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 18 RTLEAI--KNGIVKEVVIAEDADMRL--THVIIRTALQHNIPITKVE 60 (82)
T ss_pred HHHHHH--HcCCeeEEEEECCCCHHH--HHHHHHHHHhcCCCEEEEC
Confidence 345666 567899999999997652 2344455566688998864
No 169
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=26.42 E-value=1.3e+02 Score=28.93 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=32.8
Q ss_pred HHHHHhhcCCCCCEEEEcccccCCch-hHHHHHHHHHhcCCcEEEECCCCCC
Q 042652 70 WVKCLSTTRHKKDVLLVAGDVAEKYD-DFVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 70 ~l~~l~~~~~~~D~li~~GDi~~~~~-~~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
.++.|......+|+|++ |+.+... ...+.++++++......+|.||=--
T Consensus 111 r~~~L~~a~~~~d~ivi--D~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T 160 (343)
T TIGR01305 111 KMTSILEAVPQLKFICL--DVANGYSEHFVEFVKLVREAFPEHTIMAGNVVT 160 (343)
T ss_pred HHHHHHhcCCCCCEEEE--ECCCCcHHHHHHHHHHHHhhCCCCeEEEecccC
Confidence 34444323346888887 8888763 4567788888776568888898653
No 170
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=25.57 E-value=48 Score=29.27 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.9
Q ss_pred CccEEEEcccccCCceEE
Q 042652 233 TSACHVFGHTHFSWDAVL 250 (328)
Q Consensus 233 ~v~~~i~GH~H~~~~~~~ 250 (328)
+++++++||+|.+.....
T Consensus 144 ~~dl~lSGHtHgGqi~~~ 161 (193)
T cd08164 144 KPGLILTGHDHEGCDYQH 161 (193)
T ss_pred CCCEEEeCccCCCeEEEe
Confidence 367999999998775443
No 171
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=24.84 E-value=1.3e+02 Score=28.97 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCCEEEEcccccCCch-hHHHHHHHHHhcCCcEEEECCCCCC
Q 042652 71 VKCLSTTRHKKDVLLVAGDVAEKYD-DFVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 71 l~~l~~~~~~~D~li~~GDi~~~~~-~~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
++.|......+|+|++ |+.+... ....+++.+++.+..+.+|.||=--
T Consensus 113 ~~~L~~~~~g~D~ivi--D~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T 161 (346)
T PRK05096 113 TKQILALSPALNFICI--DVANGYSEHFVQFVAKAREAWPDKTICAGNVVT 161 (346)
T ss_pred HHHHHhcCCCCCEEEE--ECCCCcHHHHHHHHHHHHHhCCCCcEEEecccC
Confidence 4444222357888887 8888763 4566777777766568888899653
No 172
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=24.37 E-value=2.2e+02 Score=25.90 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=34.7
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEE
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V 114 (328)
++.+.++.+...+.....+.++.+ ...++|.+|+.+ .+ .......++.+++.+.|++.+
T Consensus 29 g~~v~~~~~~~~d~~~~~~~i~~~--~~~~~DgiIi~~--~~-~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 29 GVDAIYVGPTTADAAGQVQIIEDL--IAQGVDAIAVVP--ND-PDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HhcCCCEEEEec--CC-HHHHHHHHHHHHHCCCeEEEE
Confidence 566666544444443334555555 456799999975 11 122234556666778898887
No 173
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=24.11 E-value=4e+02 Score=23.25 Aligned_cols=17 Identities=12% Similarity=-0.084 Sum_probs=14.0
Q ss_pred CCcEEEECCCCCCCCCC
Q 042652 108 FQRVLFVPGNHDLWCRG 124 (328)
Q Consensus 108 ~~~v~~V~GNHD~~~~~ 124 (328)
..|++++.-+||+..+.
T Consensus 89 ~~p~~~iwDDHDi~~n~ 105 (228)
T cd07389 89 QVPTIGIWDDHDIGDNW 105 (228)
T ss_pred cCCEEEecccccccccc
Confidence 46999999999986554
No 174
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=23.83 E-value=71 Score=30.16 Aligned_cols=41 Identities=27% Similarity=0.497 Sum_probs=30.0
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhc---CCcEEEECCCCCCC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR---FQRVLFVPGNHDLW 121 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~---~~~v~~V~GNHD~~ 121 (328)
...++|+++++|-|.... .+.+++.++ ..||++.||--|+.
T Consensus 293 L~G~vDaIvLTGGiA~~~----~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEK----LFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred cCCCCCEEEEecchhhHH----HHHHHHHHHHhhhcceEecCCchHHH
Confidence 467899999999998763 344444433 46999999987763
No 175
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=23.72 E-value=1.2e+02 Score=27.45 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=25.7
Q ss_pred CEEEEcccccCC----------chhHHHHHHHHHhcCCcEEEECCCCCCCCC
Q 042652 82 DVLLVAGDVAEK----------YDDFVLTMSLLKDRFQRVLFVPGNHDLWCR 123 (328)
Q Consensus 82 D~li~~GDi~~~----------~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~ 123 (328)
+-++++||..-. ..++...++.++++...+.++|| |++...
T Consensus 119 ~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~~~~ 169 (248)
T TIGR03413 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEYTLS 169 (248)
T ss_pred CCEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCchHH
Confidence 458999996422 12344445555566566778899 987543
No 176
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=23.41 E-value=37 Score=33.79 Aligned_cols=70 Identities=16% Similarity=0.182 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCCcccHHHHHHHhhcCC-CCCEEEEcccccCCchhHHHHHHHHHhc----CCcEEEECCCCCCCCC
Q 042652 52 LRVFVLSDLHTDYSENMTWVKCLSTTRH-KKDVLLVAGDVAEKYDDFVLTMSLLKDR----FQRVLFVPGNHDLWCR 123 (328)
Q Consensus 52 ~ri~~iSDlH~~~~~~~~~l~~l~~~~~-~~D~li~~GDi~~~~~~~~~~~~~l~~~----~~~v~~V~GNHD~~~~ 123 (328)
-.+-+..|+|+..+..--++- +.-.+ .-.-.|+.||++|.+.+-.+++-.|-.+ +..++.=.||||-...
T Consensus 165 ~qVTiCGDLHGklDDL~~I~y--KNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mm 239 (631)
T KOG0377|consen 165 QQVTICGDLHGKLDDLLVILY--KNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMM 239 (631)
T ss_pred cceEEeccccccccceEEEEe--cCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHH
Confidence 358899999997754211010 00011 1234789999999986544444333322 3458888999985443
No 177
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=23.36 E-value=49 Score=29.81 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=14.4
Q ss_pred ccEEEEcccccCCceEECC
Q 042652 234 SACHVFGHTHFSWDAVLDG 252 (328)
Q Consensus 234 v~~~i~GH~H~~~~~~~~g 252 (328)
++..|+||+|-....+-.+
T Consensus 135 ~d~~I~GH~HP~i~l~~~~ 153 (225)
T TIGR00024 135 AKVLIFGHEHPAVKLRDSA 153 (225)
T ss_pred CCEEEECCCCceEEEEccc
Confidence 4589999999988665433
No 178
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.34 E-value=1.7e+02 Score=21.98 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEE
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V 114 (328)
..++++ +..++-+||+|.|.... ....+.........|+.++
T Consensus 15 ~vlkaI--k~gkakLViiA~Da~~~--~~k~i~~~c~~~~Vpv~~~ 56 (82)
T PRK13601 15 QTLKAI--TNCNVLQVYIAKDAEEH--VTKKIKELCEEKSIKIVYI 56 (82)
T ss_pred HHHHHH--HcCCeeEEEEeCCCCHH--HHHHHHHHHHhCCCCEEEe
Confidence 456666 56788999999999753 2244455556667898654
No 179
>PF13941 MutL: MutL protein
Probab=23.19 E-value=1.4e+02 Score=29.98 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHhhcCCCCCEEEEcccccCCch-hHHHHHHHHHhc--CCcEEEECCCCCC
Q 042652 70 WVKCLSTTRHKKDVLLVAGDVAEKYD-DFVLTMSLLKDR--FQRVLFVPGNHDL 120 (328)
Q Consensus 70 ~l~~l~~~~~~~D~li~~GDi~~~~~-~~~~~~~~l~~~--~~~v~~V~GNHD~ 120 (328)
-++.| ...+||+|+++|=.-.+.. ....-.+.|.+. ..| +++.||-+.
T Consensus 116 ~l~~i--~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~p-VIyAGN~~a 166 (457)
T PF13941_consen 116 DLEEI--REIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIP-VIYAGNKAA 166 (457)
T ss_pred HHHHH--hccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCc-EEEECCHHH
Confidence 35666 5789999999998754432 334444666654 345 445599874
No 180
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=23.14 E-value=1e+02 Score=30.06 Aligned_cols=17 Identities=41% Similarity=0.745 Sum_probs=14.3
Q ss_pred cCCCCCEEEEcccccCC
Q 042652 77 TRHKKDVLLVAGDVAEK 93 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~ 93 (328)
...+.|+||++||+--.
T Consensus 166 t~q~~~vVI~~GDLN~~ 182 (422)
T KOG3873|consen 166 TRQNADVVILAGDLNMQ 182 (422)
T ss_pred HhcCCcEEEEecCCCCC
Confidence 56789999999999654
No 181
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=22.90 E-value=2.8e+02 Score=24.22 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCC
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNH 118 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNH 118 (328)
++.+.+ .+...+.....+.++.+ ...++|.+|+++-..+ ...++.+.+.+.|++++ +++
T Consensus 29 g~~~~~-~~~~~~~~~~~~~~~~l--~~~~vdgiii~~~~~~-----~~~~~~~~~~~ipvv~~-~~~ 87 (268)
T cd01575 29 GYQLLL-GNTGYSPEREEELLRTL--LSRRPAGLILTGLEHT-----ERTRQLLRAAGIPVVEI-MDL 87 (268)
T ss_pred CCEEEE-ecCCCCchhHHHHHHHH--HHcCCCEEEEeCCCCC-----HHHHHHHHhcCCCEEEE-ecC
Confidence 455544 33333333334566666 4678999999873322 23455666667898887 444
No 182
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.43 E-value=2.5e+02 Score=23.20 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=37.0
Q ss_pred HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcC--CcEEEECCCC
Q 042652 68 MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF--QRVLFVPGNH 118 (328)
Q Consensus 68 ~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~--~~v~~V~GNH 118 (328)
+++++.. .+.++|+|.++.=++.....+..+.+.|++.+ .+++++-|+-
T Consensus 42 e~~v~aa--~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~ 92 (134)
T TIGR01501 42 EEFIKAA--IETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNL 92 (134)
T ss_pred HHHHHHH--HHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCc
Confidence 5677776 56799999998888777667778888887763 4567788874
No 183
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=22.42 E-value=1e+02 Score=24.48 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCch----h-------------HHHHHHHHHhcCCcEEEECCCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYD----D-------------FVLTMSLLKDRFQRVLFVPGNHDL 120 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~----~-------------~~~~~~~l~~~~~~v~~V~GNHD~ 120 (328)
+..+++ ....+|.|+++=|+..... . +.++++...+.+..|.+|+.+|+-
T Consensus 28 eV~~Al--~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~~e~ 94 (113)
T PF03465_consen 28 EVKKAL--EMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSEHEE 94 (113)
T ss_dssp HHHHHH--HTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TTSHH
T ss_pred HHHHHH--HhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCCCcc
Confidence 445555 5678999999999876531 1 566677777778999999999984
No 184
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=21.87 E-value=2.3e+02 Score=27.15 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=25.3
Q ss_pred cCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECC
Q 042652 77 TRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPG 116 (328)
Q Consensus 77 ~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~G 116 (328)
...+||+||..+-.... .......+.|.+.+.|++++..
T Consensus 118 lal~PDLVi~~~~~~~~-~~~~~~~~~L~~~Gipvv~~~~ 156 (374)
T PRK14048 118 LTLKADLAILANWQADT-EAGQRAIEYLESIGVPVIVVDF 156 (374)
T ss_pred hhcCCCEEEecCccccc-ccchhHHHHHHHCCCCEEEEeC
Confidence 46789999875421111 1113466888888889999864
No 185
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.73 E-value=2.1e+02 Score=22.71 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNH 118 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNH 118 (328)
..++++ +..++-+||+|.|...... ..+.......+.|++...|+-
T Consensus 32 ~vlkal--k~gkaklViiA~D~~~~~k--kki~~~~~~~~Vpv~~~~~t~ 77 (108)
T PTZ00106 32 STLKAL--RNGKAKLVIISNNCPPIRR--SEIEYYAMLSKTGVHHYAGNN 77 (108)
T ss_pred HHHHHH--HcCCeeEEEEeCCCCHHHH--HHHHHHHhhcCCCEEEeCCCH
Confidence 345566 5678999999999976532 334444555578987655543
No 186
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=21.56 E-value=1.3e+02 Score=29.05 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=26.0
Q ss_pred CCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEECCCCC
Q 042652 80 KKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFVPGNHD 119 (328)
Q Consensus 80 ~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V~GNHD 119 (328)
+||.||++|=+.....-...+.+.+.. ..||...||.-+
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~-~a~v~~~pg~~e 331 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSF-IAPVLVYPGEDE 331 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHh-hCCEEEeCCcHH
Confidence 799999999998643222233333333 489999999544
No 187
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.81 E-value=2.4e+02 Score=22.07 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEE
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V 114 (328)
..++.+ ...++-+||++-|...... ..+.........|++..
T Consensus 24 ~v~~ai--k~gk~~lVI~A~D~s~~~k--kki~~~~~~~~vp~~~~ 65 (104)
T PRK05583 24 KCEEAI--KKKKVYLIIISNDISENSK--NKFKNYCNKYNIPYIEG 65 (104)
T ss_pred HHHHHH--HcCCceEEEEeCCCCHhHH--HHHHHHHHHcCCCEEEe
Confidence 345556 4567899999999987653 33344444556787554
No 188
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=20.70 E-value=1.1e+02 Score=30.66 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEccc
Q 042652 50 SGLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGD 89 (328)
Q Consensus 50 ~~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GD 89 (328)
..-|+++-+|.|......+.++..+ .+.++|++|++|=
T Consensus 177 raNRfI~~~d~~n~l~~~ee~~~~i--~~~~pDl~vlSGl 214 (445)
T cd01938 177 RANRFIFHDDDNNPMLMREEFFSSI--LEFQPDLAVLSGL 214 (445)
T ss_pred CCCeEEEecCCcchhhhhHHHHHHH--hhcCCCEEEEech
Confidence 3468999999998744456677776 4457999999994
No 189
>PRK07714 hypothetical protein; Provisional
Probab=20.55 E-value=2.3e+02 Score=21.88 Aligned_cols=41 Identities=12% Similarity=-0.024 Sum_probs=27.2
Q ss_pred HHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEE
Q 042652 70 WVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 70 ~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V 114 (328)
.++.+ +..++-+||+|.|...... ..+.........|++.+
T Consensus 26 v~~al--~~g~~~lViiA~D~s~~~~--~ki~~~~~~~~vp~~~~ 66 (100)
T PRK07714 26 VLKEV--RSGKAKLVLLSEDASVNTT--KKITDKCTYYNVPMRKV 66 (100)
T ss_pred HHHHH--HhCCceEEEEeCCCCHHHH--HHHHHHHHhcCCCEEEe
Confidence 45555 4567899999999987642 33444445557888765
No 190
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=20.47 E-value=2.5e+02 Score=25.81 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCCCCcccHHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcCCcEEEE
Q 042652 51 GLRVFVLSDLHTDYSENMTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRFQRVLFV 114 (328)
Q Consensus 51 ~~ri~~iSDlH~~~~~~~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~~~v~~V 114 (328)
+..+++. +...+.....+.++.+ ...++|.||+++--. ......++.+++.+.||+++
T Consensus 28 g~~v~~~-~~~~~~~~q~~~i~~l--~~~~vDgIIi~~~~~---~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 28 GAKVFVQ-SANGNEAKQISQIENL--IARGVDVLVIIPQNG---QVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred CCEEEEE-eCCCCHHHHHHHHHHH--HHcCCCEEEEeCCCh---hHHHHHHHHHHHCCCeEEEe
Confidence 4566543 3444433334556665 466899999987321 12244566677777898877
No 191
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=20.47 E-value=2.2e+02 Score=22.01 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhcC-CcEEEECCCC
Q 042652 68 MTWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDRF-QRVLFVPGNH 118 (328)
Q Consensus 68 ~~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~~-~~v~~V~GNH 118 (328)
..+++.+ ...++|+|.++.=..+....++.+.+..+..+ ...+++-|.|
T Consensus 40 ~~~~~~i--~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~ 89 (125)
T cd02065 40 EEIVEAA--KEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAH 89 (125)
T ss_pred HHHHHHH--HHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCc
Confidence 4556666 45789999998766555433344444444444 3455555555
No 192
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.18 E-value=2.3e+02 Score=21.04 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=31.5
Q ss_pred HHHHHHhhcCCCCCEEEEcccccCCchhHHHHHHHHHhc--CCcEEEECCCCC
Q 042652 69 TWVKCLSTTRHKKDVLLVAGDVAEKYDDFVLTMSLLKDR--FQRVLFVPGNHD 119 (328)
Q Consensus 69 ~~l~~l~~~~~~~D~li~~GDi~~~~~~~~~~~~~l~~~--~~~v~~V~GNHD 119 (328)
+.++.+ ....+|++++-.++.+. +...+++.+++. ..|++++-++.|
T Consensus 34 ~~~~~~--~~~~~d~iiid~~~~~~--~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 34 EALELL--KKHPPDLIIIDLELPDG--DGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHH--HHSTESEEEEESSSSSS--BHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHHHHh--cccCceEEEEEeeeccc--cccccccccccccccccEEEecCCCC
Confidence 445555 35569999999888774 234566666654 467777776666
Done!