BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042653
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 55/85 (64%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
LLKNCY ++P+ GKVIV E ++P P+ SI +K+ H D LM+ +PGGKERT EF L
Sbjct: 282 LLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQAL 341
Query: 61 ATAAGFSGISCERAIGNFWVMEFYK 85
A A+GF G N +VMEF K
Sbjct: 342 AMASGFRGFKVASCAFNTYVMEFLK 366
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
LKNCY+++P++GKVIV E ++P P++S+ +K H DV+M+ +PGGKERT+ EF L
Sbjct: 279 FLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDL 338
Query: 61 ATAAGFSGISCERAIGNFWVMEFYK 85
A AGF G N ++MEF K
Sbjct: 339 AKGAGFQGFKVHCNAFNTYIMEFLK 363
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
LLKNCY ++P GKV++V+ ++P P + S+ H D++M+ +PGG+ER EF L
Sbjct: 280 LLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQAL 339
Query: 61 ATAAGFSGISCERAIGNFWVMEFYK 85
A AGF+G+ N W +EF K
Sbjct: 340 ARGAGFTGVKSTYIYANAWAIEFTK 364
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 59/87 (67%), Gaps = 4/87 (4%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
L NC+K++ +GKVI+VE ++PE PNTS ESKL S D LM I + GG+ERT ++ L
Sbjct: 288 FLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKL 346
Query: 61 ATAAGFS--GISCERAIGNFWVMEFYK 85
+ +GFS ++C RA + VMEFYK
Sbjct: 347 SKLSGFSKFQVAC-RAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
L NC+K++ +GKVI+VE ++PE PNTS ESKL S D L I + GG+ERT ++ L
Sbjct: 288 FLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLXFI-TVGGRERTEKQYEKL 346
Query: 61 ATAAGFSG--ISCERAIGNFWVMEFYK 85
+ +GFS ++C RA + V EFYK
Sbjct: 347 SKLSGFSKFQVAC-RAFNSLGVXEFYK 372
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 1 LLKNCYKSIP---EDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LKN ++I +DGKVI+++ I E + ++L YD++M+ GKERT+ E+
Sbjct: 272 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL-GKERTKQEW 330
Query: 58 MTLATAAGFS 67
L AGFS
Sbjct: 331 EKLIYDAGFS 340
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 LLKNCYKSIP---EDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LKN ++I +DGKVI+++ I E + ++L YD++M+ GKERT+ E+
Sbjct: 268 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL-GKERTKQEW 326
Query: 58 MTLATAAGFSG 68
L AGFS
Sbjct: 327 EKLIYDAGFSS 337
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 1 LLKNCYKSIP---EDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LKN ++I +DGKVI+++ I E + ++L YD++M+ GKERT+ E+
Sbjct: 271 ILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL-GKERTKQEW 329
Query: 58 MTLATAAGFSG 68
L AGFS
Sbjct: 330 EKLIYDAGFSS 340
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
+L NC + P G+V+V+++++PE N + +SK + + G+ERT E L
Sbjct: 268 ILTNCRRVXPAHGRVLVIDAVVPE-GNDAHQSKEXD----FXXLAARTGQERTAAELEPL 322
Query: 61 ATAAGFSGISCERAIG 76
TAA G+ +R +G
Sbjct: 323 FTAA---GLRLDRVVG 335
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
LL NC +++ DG+V+V+E I + S S ++ +DV + + + G+ RT E + L
Sbjct: 254 LLGNCREAMAGDGRVVVIERTI----SASEPSPMSVLWDVHLFM-ACAGRHRTTEEVVDL 308
Query: 61 ATAAGFS 67
GF+
Sbjct: 309 LGRGGFA 315
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
LL+ Y + G ++V+ES++ E + ++L Y + M++Q+ G+ERT + L
Sbjct: 265 LLERIYHTCKPGGGILVIESLLDEDRRGPLLTQL---YSLNMLVQTE-GQERTPTHYHML 320
Query: 61 ATAAGF 66
++AGF
Sbjct: 321 LSSAGF 326
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
+L+ C +++ G+++V++ +V + ++ D L M+ GG+ RTR E + L
Sbjct: 269 ILRGCVRALEPGGRLLVLDR--ADVEGDGADRFFSTLLD-LRMLTFMGGRVRTRDEVVDL 325
Query: 61 ATAAGFSGISCERAIG------NFWVMEF 83
A +AG + ++ ER G +F ++EF
Sbjct: 326 AGSAGLA-LASERTSGSTTLPFDFSILEF 353
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1 LLKNCYKSIPEDGK---VIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LK C +++ DGK VIV++ +I E + + +++ +V I GKER E+
Sbjct: 272 ILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLMNV--TISCVNGKERNEEEW 329
Query: 58 MTLATAAGFSGISCERAIGNFWVMEFY 84
L AGF G ++E Y
Sbjct: 330 KKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 32.0 bits (71), Expect = 0.096, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
+L+ C +++ G+++V++ +V + ++ D L + GG+ RTR E + L
Sbjct: 269 ILRGCVRALEPGGRLLVLDR--ADVEGDGADRFFSTLLD-LRXLTFXGGRVRTRDEVVDL 325
Query: 61 ATAAGFSGISCERAIG------NFWVMEF 83
A +AG + ++ ER G +F ++EF
Sbjct: 326 AGSAGLA-LASERTSGSTTLPFDFSILEF 353
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 1 LLKNCYKSIPEDGK---VIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LK C +++ DGK V +++ +I + + + +++ DV M + GKER E+
Sbjct: 267 ILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLN--GKERNEEEW 324
Query: 58 MTLATAAGFSGISCERAIGNFWVMEFY 84
L AGF G ++E Y
Sbjct: 325 KKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 29.3 bits (64), Expect = 0.58, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 1 LLKNCYKSIPEDGK---VIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEF 57
+LK C +++ DGK V +++ +I + + + +++ DV + GKER E+
Sbjct: 267 ILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXACLN--GKERNEEEW 324
Query: 58 MTLATAAGFSGISCERAIGNFWVMEFY 84
L AGF G ++E Y
Sbjct: 325 KKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|4AFY|A Chain A, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AFY|B Chain B, Crystal Structure Of The Fimx Eal Domain In Complex With
Reaction Product Pgpg
pdb|4AG0|A Chain A, Crystal Structure Of Fimx Eal Domain
pdb|4AG0|B Chain B, Crystal Structure Of Fimx Eal Domain
Length = 274
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 26 PNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFS 67
P S+ + +Y+VL+ + +P G+E EF+ A AG +
Sbjct: 45 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 86
>pdb|4J40|A Chain A, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
pdb|4J40|B Chain B, Crystal Structure Of The Dual-domain Ggdef-eal Module Of
Fimx From Pseudomonas Aeruginosa
Length = 437
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 26 PNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFS 67
P S+ + +Y+VL+ + +P G+E EF+ A AG +
Sbjct: 208 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 249
>pdb|3HV9|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa
Length = 265
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 26 PNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFS 67
P S+ + +Y+VL+ + +P G+E EF+ A AG +
Sbjct: 36 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 77
>pdb|3HV8|A Chain A, Crystal Structure Of Fimx Eal Domain From Pseudomonas
Aeruginosa Bound To C-Di-Gmp
Length = 268
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 26 PNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFS 67
P S+ + +Y+VL+ + +P G+E EF+ A AG +
Sbjct: 39 PVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLA 80
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 1 LLKNCYKSIPEDGKVIVVESMI-PEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMT 59
+L+ C ++ G V+V+E++ E T ++ ++ +++ GGKER+ E
Sbjct: 256 ILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYF---------GGKERSLAELGE 306
Query: 60 LATAAGFS 67
LA AG +
Sbjct: 307 LAAQAGLA 314
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 1 LLKNCYKSIPEDGKVIVVES----MIPE-VPNTSIESKLNSHYDV 40
LL+ CYK+IP ++I+ S + P + N+ ++ L SH+D+
Sbjct: 272 LLQGCYKNIP--ARIILFASGPGTVAPGLIVNSELKDPLRSHHDI 314
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 7/45 (15%)
Query: 1 LLKNCYKSIPEDGKVIVVES----MIPE-VPNTSIESKLNSHYDV 40
LL+ CYK+IP ++I+ S + P + N+ ++ L SH+D+
Sbjct: 276 LLQGCYKNIP--ARIILFASGPGTVAPGLIVNSELKDPLRSHHDI 318
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTL 60
+L+ + D +++V++++I E P S ++ GG ER+ EF L
Sbjct: 289 ILRRIATAXKPDSRLLVIDNLIDERPAASTLFVDLL------LLVLVGGAERSESEFAAL 342
Query: 61 ATAAGFSGISCERAI 75
SG+ ER++
Sbjct: 343 LEK---SGLRVERSL 354
>pdb|1NBA|A Chain A, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|B Chain B, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|C Chain C, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
pdb|1NBA|D Chain D, Crystal Structure Analysis, Refinement And Enzymatic
Reaction Mechanism Of N-Carbamoylsarcosine
Amidohydrolase From Arthrobacter Sp. At 2.0 Angstroms
Resolution
Length = 264
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 10 PEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGI 69
P DG+V++ ++ P T++E L S+ +++ RH + A A GF I
Sbjct: 135 PADGEVVIEKNRASAFPGTNLELFLTSNRIDTLIVTGATAAGCVRHT-VEDAIAKGFRPI 193
Query: 70 SCERAIGN 77
IG+
Sbjct: 194 IPRETIGD 201
>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|B Chain B, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|C Chain C, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2N|D Chain D, Crystal Structure Of E.Coli Transthyretin-Related Protein
With Bound Zn
pdb|2G2P|A Chain A, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|B Chain B, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|C Chain C, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
pdb|2G2P|D Chain D, Crystal Structure Of E.coli Transthyretin-related Protein
With Bound Zn And Br
Length = 114
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 18 VESMIPEVPNTSIESKLNSHYDVLMMIQSPG 48
+ES PE+P +K+N HY V +++ G
Sbjct: 77 LESFFPEIPVEFHINKVNEHYHVPLLLSQYG 107
>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|B Chain B, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|C Chain C, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
pdb|2IGL|D Chain D, Crystal Structure Of E. Coli Yedx, A Transthyretin Related
Protein
Length = 118
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 18 VESMIPEVPNTSIESKLNSHYDVLMMIQSPG 48
+ES PE+P +K+N HY V +++ G
Sbjct: 81 LESFFPEIPVEFHINKVNEHYHVPLLLSQYG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,515,875
Number of Sequences: 62578
Number of extensions: 78895
Number of successful extensions: 192
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 28
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)