Query 042653
Match_columns 85
No_of_seqs 153 out of 1034
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:18:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.7 3.2E-17 6.9E-22 109.6 6.0 85 1-85 257-342 (342)
2 PF00891 Methyltransf_2: O-met 99.5 7E-15 1.5E-19 94.5 4.6 61 1-62 179-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.1 3.1E-10 6.8E-15 75.3 6.9 66 1-72 236-305 (306)
4 PF05891 Methyltransf_PK: AdoM 98.5 7.1E-08 1.5E-12 61.7 2.4 58 2-73 144-201 (218)
5 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.3E-06 2.8E-11 54.8 8.0 79 1-85 125-223 (223)
6 PRK00216 ubiE ubiquinone/menaq 98.5 2.1E-06 4.5E-11 54.4 8.3 82 1-85 140-238 (239)
7 TIGR00740 methyltransferase, p 98.4 6.5E-08 1.4E-12 62.2 1.3 67 1-72 143-226 (239)
8 PLN02233 ubiquinone biosynthes 98.3 4.3E-06 9.3E-11 54.7 7.6 81 1-83 164-259 (261)
9 PRK11873 arsM arsenite S-adeno 98.3 3.5E-06 7.6E-11 55.0 7.1 66 1-73 165-230 (272)
10 PTZ00098 phosphoethanolamine N 98.3 4.9E-06 1.1E-10 54.5 7.6 67 1-75 138-204 (263)
11 TIGR02752 MenG_heptapren 2-hep 98.3 6.3E-06 1.4E-10 52.5 7.3 83 1-85 133-231 (231)
12 PLN02232 ubiquinone biosynthes 98.2 6.3E-06 1.4E-10 50.3 6.2 72 2-75 64-149 (160)
13 PLN02490 MPBQ/MSBQ methyltrans 98.2 1.1E-05 2.3E-10 55.0 7.0 62 1-75 197-258 (340)
14 PF06080 DUF938: Protein of un 98.1 4.2E-05 9.2E-10 48.7 7.9 81 1-84 123-203 (204)
15 PLN02336 phosphoethanolamine N 98.1 2.2E-05 4.9E-10 54.9 7.1 64 1-73 351-414 (475)
16 PF01209 Ubie_methyltran: ubiE 98.0 2.5E-06 5.3E-11 55.2 1.2 78 2-85 136-233 (233)
17 PRK15451 tRNA cmo(5)U34 methyl 98.0 2.1E-05 4.7E-10 50.9 5.3 70 1-71 146-228 (247)
18 PF13489 Methyltransf_23: Meth 98.0 7.8E-06 1.7E-10 48.8 3.0 63 1-70 97-160 (161)
19 PRK15068 tRNA mo(5)U34 methylt 97.9 6.4E-05 1.4E-09 50.7 7.3 68 1-74 208-275 (322)
20 TIGR00452 methyltransferase, p 97.9 6.3E-05 1.4E-09 50.7 7.0 66 1-74 207-274 (314)
21 PLN02244 tocopherol O-methyltr 97.9 0.00017 3.6E-09 48.9 8.3 73 1-74 205-279 (340)
22 COG2226 UbiE Methylase involve 97.8 0.00032 6.9E-09 45.7 8.2 80 2-82 139-234 (238)
23 smart00828 PKS_MT Methyltransf 97.7 0.00023 4.9E-09 45.1 6.5 61 1-75 86-146 (224)
24 PRK08317 hypothetical protein; 97.6 0.00036 7.8E-09 44.0 6.7 70 1-73 106-176 (241)
25 PRK04266 fibrillarin; Provisio 97.5 0.00046 1E-08 44.5 5.9 61 2-83 159-223 (226)
26 PF02353 CMAS: Mycolic acid cy 97.4 0.00012 2.7E-09 48.4 2.4 70 2-74 149-218 (273)
27 COG2230 Cfa Cyclopropane fatty 97.3 0.0009 2E-08 44.6 6.1 67 2-75 159-225 (283)
28 PLN02396 hexaprenyldihydroxybe 97.3 0.00064 1.4E-08 46.0 4.7 68 1-72 217-288 (322)
29 KOG4300 Predicted methyltransf 97.2 0.0017 3.7E-08 41.9 6.1 76 1-83 164-244 (252)
30 PRK14103 trans-aconitate 2-met 97.2 0.0015 3.2E-08 42.4 5.9 66 1-69 108-180 (255)
31 PRK05134 bifunctional 3-demeth 97.2 0.001 2.2E-08 42.4 5.1 67 1-73 133-205 (233)
32 PRK11036 putative S-adenosyl-L 97.1 0.0012 2.6E-08 42.8 4.7 73 1-74 131-208 (255)
33 KOG2361 Predicted methyltransf 97.1 0.00039 8.4E-09 45.5 2.1 68 2-71 166-235 (264)
34 TIGR01983 UbiG ubiquinone bios 97.0 0.0016 3.4E-08 41.2 4.2 66 1-72 131-202 (224)
35 KOG1540 Ubiquinone biosynthesi 97.0 0.0022 4.9E-08 42.5 4.9 66 2-70 197-278 (296)
36 TIGR00537 hemK_rel_arch HemK-r 96.9 0.0071 1.5E-07 37.2 6.7 55 2-85 123-177 (179)
37 PLN02336 phosphoethanolamine N 96.8 0.0026 5.7E-08 44.7 4.5 56 1-70 124-179 (475)
38 PF08003 Methyltransf_9: Prote 96.6 0.0037 8E-08 42.2 4.0 65 2-74 202-268 (315)
39 PF05219 DREV: DREV methyltran 96.5 0.009 1.9E-07 39.5 5.1 65 1-75 170-242 (265)
40 COG4798 Predicted methyltransf 96.4 0.012 2.6E-07 37.7 5.3 55 3-72 150-204 (238)
41 PF12147 Methyltransf_20: Puta 96.1 0.039 8.4E-07 37.3 6.5 72 2-85 232-311 (311)
42 PRK00517 prmA ribosomal protei 96.0 0.05 1.1E-06 35.3 6.7 29 54-82 219-247 (250)
43 PRK11705 cyclopropane fatty ac 95.9 0.023 4.9E-07 39.4 5.2 64 2-74 250-313 (383)
44 PRK11207 tellurite resistance 95.8 0.05 1.1E-06 34.1 6.1 53 1-71 116-168 (197)
45 TIGR00477 tehB tellurite resis 95.6 0.06 1.3E-06 33.7 5.8 54 1-72 115-168 (195)
46 TIGR02072 BioC biotin biosynth 95.6 0.066 1.4E-06 33.7 6.0 59 1-72 117-175 (240)
47 PTZ00146 fibrillarin; Provisio 95.5 0.14 3E-06 34.5 7.4 62 2-83 220-284 (293)
48 PRK14968 putative methyltransf 95.0 0.17 3.7E-06 30.8 6.4 44 2-74 131-174 (188)
49 PF04672 Methyltransf_19: S-ad 94.9 0.021 4.5E-07 37.9 2.2 61 1-69 172-232 (267)
50 PF05148 Methyltransf_8: Hypot 94.6 0.074 1.6E-06 34.3 4.0 57 2-85 141-197 (219)
51 PF13847 Methyltransf_31: Meth 94.4 0.0079 1.7E-07 36.0 -0.7 59 1-65 92-152 (152)
52 PRK08287 cobalt-precorrin-6Y C 94.2 0.18 3.8E-06 31.2 5.0 19 54-72 137-155 (187)
53 PRK10258 biotin biosynthesis p 94.1 0.2 4.3E-06 32.3 5.4 61 1-68 122-182 (251)
54 PRK01683 trans-aconitate 2-met 93.9 0.29 6.3E-06 31.6 5.9 62 1-68 112-182 (258)
55 TIGR03534 RF_mod_PrmC protein- 93.9 0.14 3E-06 32.7 4.3 22 54-75 222-243 (251)
56 PRK06922 hypothetical protein; 93.5 0.065 1.4E-06 39.8 2.5 25 1-25 519-543 (677)
57 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.5 0.03 6.5E-07 36.9 0.8 58 2-73 182-239 (256)
58 PRK12335 tellurite resistance 93.3 0.41 8.8E-06 31.7 5.9 54 1-72 205-258 (287)
59 KOG3045 Predicted RNA methylas 91.9 0.95 2.1E-05 30.5 6.0 57 2-85 247-303 (325)
60 PF11968 DUF3321: Putative met 91.8 0.58 1.3E-05 30.3 4.9 53 1-75 126-183 (219)
61 PRK09328 N5-glutamine S-adenos 91.3 1.5 3.3E-05 28.4 6.6 29 55-83 244-273 (275)
62 TIGR03438 probable methyltrans 90.8 0.56 1.2E-05 31.4 4.3 33 49-81 266-299 (301)
63 PF10017 Methyltransf_33: Hist 90.7 0.77 1.7E-05 27.0 4.4 33 48-80 92-125 (127)
64 PRK05785 hypothetical protein; 88.3 4.9 0.00011 25.8 7.4 33 52-85 191-224 (226)
65 PF06859 Bin3: Bicoid-interact 87.4 0.17 3.7E-06 29.4 -0.0 66 1-74 26-93 (110)
66 PF05724 TPMT: Thiopurine S-me 86.7 1 2.3E-05 28.9 3.3 50 3-72 139-189 (218)
67 PRK00121 trmB tRNA (guanine-N( 86.7 0.63 1.4E-05 29.3 2.2 19 1-19 138-156 (202)
68 TIGR03438 probable methyltrans 86.6 0.54 1.2E-05 31.5 2.0 18 1-18 159-176 (301)
69 PLN02585 magnesium protoporphy 86.6 0.61 1.3E-05 31.7 2.3 24 52-75 278-301 (315)
70 PRK11188 rrmJ 23S rRNA methylt 86.2 0.89 1.9E-05 28.9 2.8 20 1-20 147-166 (209)
71 PRK00107 gidB 16S rRNA methylt 85.6 0.78 1.7E-05 28.8 2.2 19 1-19 127-145 (187)
72 PRK07402 precorrin-6B methylas 85.5 0.87 1.9E-05 28.3 2.5 20 1-20 124-143 (196)
73 TIGR00091 tRNA (guanine-N(7)-) 85.5 0.78 1.7E-05 28.6 2.2 19 1-19 114-132 (194)
74 TIGR00438 rrmJ cell division p 85.4 0.69 1.5E-05 28.6 1.9 17 2-18 129-145 (188)
75 COG2227 UbiG 2-polyprenyl-3-me 85.3 0.79 1.7E-05 30.2 2.2 68 1-74 143-216 (243)
76 smart00138 MeTrc Methyltransfe 85.3 0.62 1.3E-05 30.7 1.8 19 1-19 224-242 (264)
77 PF07942 N2227: N2227-like pro 85.0 5.2 0.00011 26.8 6.0 58 2-73 185-242 (270)
78 PRK08558 adenine phosphoribosy 84.6 5.3 0.00011 26.1 5.8 58 7-73 171-236 (238)
79 PRK10611 chemotaxis methyltran 83.7 0.83 1.8E-05 30.7 1.9 18 1-18 244-261 (287)
80 TIGR02081 metW methionine bios 83.6 2.2 4.7E-05 26.5 3.6 26 49-74 143-168 (194)
81 TIGR02021 BchM-ChlM magnesium 83.0 1.5 3.3E-05 27.6 2.8 26 50-75 183-208 (219)
82 COG0503 Apt Adenine/guanine ph 82.9 4.9 0.00011 25.1 5.0 20 6-25 110-129 (179)
83 KOG1270 Methyltransferases [Co 82.9 2.6 5.7E-05 28.3 3.9 66 2-72 178-248 (282)
84 COG2242 CobL Precorrin-6B meth 82.7 1.1 2.3E-05 28.5 1.9 21 1-21 117-137 (187)
85 TIGR03439 methyl_EasF probable 82.5 2.7 5.9E-05 28.7 3.9 30 51-80 287-317 (319)
86 PRK07580 Mg-protoporphyrin IX 82.3 2.4 5.2E-05 26.6 3.5 26 50-75 191-216 (230)
87 TIGR00138 gidB 16S rRNA methyl 82.0 1.4 2.9E-05 27.4 2.2 17 2-18 125-141 (181)
88 TIGR00006 S-adenosyl-methyltra 81.8 1.4 3E-05 29.9 2.4 23 2-24 223-245 (305)
89 PLN03075 nicotianamine synthas 81.4 1.2 2.6E-05 30.1 1.9 19 1-19 215-233 (296)
90 TIGR03840 TMPT_Se_Te thiopurin 81.3 2.8 6.1E-05 26.8 3.5 50 2-71 135-185 (213)
91 PRK11088 rrmA 23S rRNA methylt 81.3 1.6 3.5E-05 28.6 2.5 18 2-19 164-181 (272)
92 PRK00050 16S rRNA m(4)C1402 me 80.6 1.7 3.6E-05 29.4 2.4 23 2-24 219-241 (296)
93 PRK14967 putative methyltransf 80.6 1.7 3.7E-05 27.6 2.4 20 2-21 142-161 (223)
94 PRK00377 cbiT cobalt-precorrin 80.6 1.5 3.2E-05 27.4 2.0 17 1-17 127-143 (198)
95 COG4627 Uncharacterized protei 80.4 1.9 4.1E-05 26.9 2.4 17 2-18 69-85 (185)
96 TIGR00563 rsmB ribosomal RNA s 80.1 1.6 3.5E-05 30.6 2.3 24 1-24 350-373 (426)
97 PRK04457 spermidine synthase; 79.3 1.6 3.4E-05 28.7 2.0 18 1-18 159-176 (262)
98 COG0275 Predicted S-adenosylme 79.2 2 4.4E-05 29.3 2.4 23 2-24 227-249 (314)
99 PRK14901 16S rRNA methyltransf 78.3 2 4.3E-05 30.3 2.3 23 1-23 366-388 (434)
100 PRK09489 rsmC 16S ribosomal RN 78.0 2 4.3E-05 29.5 2.2 20 1-20 285-304 (342)
101 KOG3987 Uncharacterized conser 77.2 6.2 0.00013 26.0 4.1 65 1-74 188-261 (288)
102 PRK13255 thiopurine S-methyltr 76.9 4.3 9.2E-05 26.0 3.4 51 2-72 138-189 (218)
103 PRK09219 xanthine phosphoribos 76.6 9.9 0.00021 24.0 4.9 60 7-75 112-179 (189)
104 PF05175 MTS: Methyltransferas 76.4 0.91 2E-05 27.7 0.2 19 1-19 122-140 (170)
105 PF01739 CheR: CheR methyltran 76.0 0.85 1.9E-05 28.9 -0.0 19 1-19 157-175 (196)
106 TIGR00406 prmA ribosomal prote 74.9 3 6.4E-05 27.7 2.4 20 1-20 241-260 (288)
107 PRK13942 protein-L-isoaspartat 74.8 2.9 6.4E-05 26.5 2.2 17 2-18 159-175 (212)
108 PRK15001 SAM-dependent 23S rib 74.6 2.8 6E-05 29.3 2.2 19 1-19 322-340 (378)
109 PF01795 Methyltransf_5: MraW 74.1 1.3 2.9E-05 30.1 0.6 20 2-21 224-243 (310)
110 PRK14904 16S rRNA methyltransf 73.3 3.2 6.9E-05 29.3 2.3 23 1-23 359-381 (445)
111 KOG2198 tRNA cytosine-5-methyl 73.1 2.4 5.3E-05 29.6 1.6 23 1-23 278-300 (375)
112 PRK10901 16S rRNA methyltransf 72.9 3.4 7.5E-05 29.0 2.4 23 1-23 354-376 (427)
113 cd01093 CRIB_PAK_like PAK (p21 72.5 2.4 5.1E-05 20.6 1.1 20 51-70 25-44 (46)
114 PF07927 YcfA: YcfA-like prote 72.4 4.2 9.1E-05 20.0 2.1 17 55-71 2-18 (56)
115 TIGR00080 pimt protein-L-isoas 71.6 3.6 7.8E-05 26.0 2.1 17 2-18 160-176 (215)
116 TIGR00446 nop2p NOL1/NOP2/sun 71.5 4.3 9.3E-05 26.6 2.5 23 1-23 181-203 (264)
117 COG1352 CheR Methylase of chem 71.5 3.3 7.1E-05 27.7 1.9 18 1-18 223-240 (268)
118 TIGR01177 conserved hypothetic 71.0 3.8 8.1E-05 27.7 2.2 19 1-19 276-294 (329)
119 COG2519 GCD14 tRNA(1-methylade 70.7 4.6 0.0001 26.9 2.4 21 2-22 178-198 (256)
120 TIGR01744 XPRTase xanthine pho 70.6 18 0.00039 22.8 5.1 59 7-74 112-178 (191)
121 PF03291 Pox_MCEL: mRNA cappin 70.4 1.5 3.2E-05 30.0 0.1 21 52-72 246-266 (331)
122 PRK11805 N5-glutamine S-adenos 69.8 3.8 8.3E-05 27.6 2.0 17 1-17 245-261 (307)
123 PRK13944 protein-L-isoaspartat 69.3 4.6 0.0001 25.4 2.2 16 3-18 157-172 (205)
124 PF07109 Mg-por_mtran_C: Magne 69.0 4.2 9E-05 23.1 1.7 33 52-84 61-96 (97)
125 PRK14902 16S rRNA methyltransf 68.8 4.4 9.6E-05 28.6 2.2 22 1-22 361-382 (444)
126 PRK13256 thiopurine S-methyltr 68.7 11 0.00023 24.6 3.8 22 2-23 146-167 (226)
127 PRK00312 pcm protein-L-isoaspa 68.6 5.4 0.00012 25.0 2.4 18 2-19 158-175 (212)
128 PRK11933 yebU rRNA (cytosine-C 68.5 3.7 8E-05 29.5 1.8 19 1-19 224-242 (470)
129 PF08845 SymE_toxin: Toxin Sym 68.5 4.3 9.3E-05 20.7 1.6 12 59-70 31-42 (57)
130 TIGR03533 L3_gln_methyl protei 68.1 4.3 9.4E-05 27.0 2.0 17 1-17 233-249 (284)
131 TIGR00417 speE spermidine synt 67.9 4.7 0.0001 26.5 2.1 17 2-18 169-185 (270)
132 PRK14903 16S rRNA methyltransf 67.4 5 0.00011 28.4 2.2 23 1-23 348-370 (431)
133 PF03492 Methyltransf_7: SAM d 66.7 18 0.0004 24.8 4.8 66 6-71 170-251 (334)
134 PRK11524 putative methyltransf 66.5 5.3 0.00012 26.5 2.1 17 2-18 63-79 (284)
135 PF00107 ADH_zinc_N: Zinc-bind 65.9 2.1 4.6E-05 24.3 0.1 21 2-22 72-92 (130)
136 PF05772 NinB: NinB protein; 65.9 15 0.00033 21.8 3.8 37 37-74 47-87 (127)
137 COG4976 Predicted methyltransf 65.7 25 0.00054 23.6 5.0 58 3-74 209-266 (287)
138 PRK00811 spermidine synthase; 64.9 5.8 0.00013 26.4 2.1 17 2-18 174-190 (283)
139 PF13137 DUF3983: Protein of u 63.2 4.6 0.0001 18.4 0.9 17 50-66 18-34 (34)
140 KOG2899 Predicted methyltransf 63.0 6.2 0.00013 26.5 1.9 61 1-69 191-253 (288)
141 PF10087 DUF2325: Uncharacteri 62.9 12 0.00025 20.7 2.8 24 48-71 6-29 (97)
142 PRK09213 pur operon repressor; 62.5 7.7 0.00017 26.0 2.3 20 7-26 191-210 (271)
143 PF13592 HTH_33: Winged helix- 61.2 9.4 0.0002 19.3 2.0 25 49-73 19-43 (60)
144 PRK06202 hypothetical protein; 60.8 7.4 0.00016 24.7 2.0 23 51-74 201-223 (232)
145 KOG1712 Adenine phosphoribosyl 60.8 7.8 0.00017 24.3 1.9 21 6-26 116-136 (183)
146 COG5443 FlbT Flagellar biosynt 60.0 23 0.00051 21.3 3.8 27 36-62 57-83 (148)
147 TIGR03704 PrmC_rel_meth putati 59.8 8.9 0.00019 25.0 2.2 18 1-18 198-215 (251)
148 COG4822 CbiK Cobalamin biosynt 59.8 12 0.00027 24.6 2.8 18 52-69 216-233 (265)
149 smart00874 B5 tRNA synthetase 59.5 15 0.00032 18.9 2.7 21 49-69 16-36 (71)
150 PF03269 DUF268: Caenorhabditi 59.3 14 0.0003 23.2 2.9 23 2-24 94-116 (177)
151 PF01555 N6_N4_Mtase: DNA meth 59.0 3.5 7.5E-05 25.5 0.2 17 2-18 39-55 (231)
152 PF02479 Herpes_IE68: Herpesvi 58.9 18 0.00039 21.7 3.2 29 35-65 62-90 (132)
153 KOG1975 mRNA cap methyltransfe 58.9 8.4 0.00018 26.9 2.0 16 1-16 219-234 (389)
154 PF08002 DUF1697: Protein of u 58.8 16 0.00035 21.7 3.1 26 47-72 13-39 (137)
155 PRK01581 speE spermidine synth 58.0 11 0.00023 26.6 2.4 17 2-18 251-267 (374)
156 PF05401 NodS: Nodulation prot 57.9 5.2 0.00011 25.7 0.8 19 2-20 129-147 (201)
157 COG0144 Sun tRNA and rRNA cyto 57.7 7.7 0.00017 26.8 1.7 23 1-23 270-292 (355)
158 PF11312 DUF3115: Protein of u 57.3 9.5 0.00021 26.2 2.1 19 2-20 225-243 (315)
159 PF05430 Methyltransf_30: S-ad 57.0 32 0.0007 20.2 4.1 31 54-84 92-122 (124)
160 PLN02366 spermidine synthase 56.6 9.2 0.0002 25.9 1.9 17 2-18 189-205 (308)
161 COG1064 AdhP Zn-dependent alco 55.9 29 0.00062 24.1 4.2 21 2-22 242-262 (339)
162 PRK13699 putative methylase; P 55.1 14 0.0003 23.9 2.5 16 2-17 55-70 (227)
163 TIGR03439 methyl_EasF probable 54.5 11 0.00024 25.8 2.0 21 1-21 178-200 (319)
164 COG4421 Capsular polysaccharid 54.4 13 0.00028 25.9 2.3 21 52-72 241-261 (368)
165 PF03848 TehB: Tellurite resis 54.1 7 0.00015 24.8 1.0 21 1-21 115-135 (192)
166 TIGR00027 mthyl_TIGR00027 meth 53.9 50 0.0011 21.8 5.0 20 52-71 229-248 (260)
167 PF07862 Nif11: Nitrogen fixat 53.6 18 0.00039 17.4 2.2 18 52-69 27-44 (49)
168 PF06962 rRNA_methylase: Putat 53.5 5.9 0.00013 24.0 0.6 20 2-21 75-94 (140)
169 PF08468 MTS_N: Methyltransfer 53.3 13 0.00027 22.8 2.0 20 1-20 87-106 (155)
170 PLN02668 indole-3-acetate carb 53.1 80 0.0017 22.4 6.9 21 52-72 287-308 (386)
171 COG2813 RsmC 16S RNA G1207 met 53.0 12 0.00027 25.4 2.1 20 1-20 248-267 (300)
172 TIGR00536 hemK_fam HemK family 52.2 12 0.00027 24.7 2.0 19 1-20 226-244 (284)
173 PF01206 TusA: Sulfurtransfera 51.9 26 0.00057 17.8 2.9 30 52-81 38-67 (70)
174 PF03484 B5: tRNA synthetase B 51.7 19 0.00042 18.7 2.3 23 49-71 16-38 (70)
175 TIGR01743 purR_Bsub pur operon 51.2 13 0.00028 24.9 1.9 19 7-25 189-207 (268)
176 COG0500 SmtA SAM-dependent met 51.1 21 0.00045 19.4 2.6 23 2-24 138-160 (257)
177 KOG0902 Phosphatidylinositol 4 50.8 22 0.00048 29.6 3.3 30 56-85 1568-1601(1803)
178 COG3053 CitC Citrate lyase syn 50.4 19 0.00042 24.8 2.7 30 51-82 95-124 (352)
179 COG4301 Uncharacterized conser 50.3 15 0.00033 24.9 2.1 36 48-83 283-319 (321)
180 COG0217 Uncharacterized conser 50.1 21 0.00046 23.6 2.7 65 6-72 87-167 (241)
181 TIGR01033 DNA-binding regulato 50.1 31 0.00068 22.6 3.6 19 6-24 87-105 (238)
182 cd03413 CbiK_C Anaerobic cobal 50.1 19 0.00041 20.3 2.3 18 54-71 81-98 (103)
183 PRK14121 tRNA (guanine-N(7)-)- 49.7 16 0.00034 25.8 2.2 62 2-72 218-285 (390)
184 PRK13810 orotate phosphoribosy 49.3 65 0.0014 20.2 5.0 57 7-73 117-181 (187)
185 COG4123 Predicted O-methyltran 49.0 17 0.00037 24.1 2.2 19 1-19 152-170 (248)
186 PRK10556 hypothetical protein; 48.9 25 0.00053 20.2 2.5 21 53-73 4-24 (111)
187 KOG1661 Protein-L-isoaspartate 48.5 17 0.00036 23.9 2.1 17 2-18 176-192 (237)
188 PRK03612 spermidine synthase; 48.4 14 0.0003 26.8 1.9 18 2-19 398-415 (521)
189 PF03698 UPF0180: Uncharacteri 48.3 31 0.00067 18.9 2.8 24 51-74 7-30 (80)
190 PRK00536 speE spermidine synth 48.1 17 0.00037 24.2 2.1 18 2-19 154-171 (262)
191 PF01870 Hjc: Archaeal hollida 47.7 22 0.00047 19.7 2.2 20 53-72 2-21 (88)
192 PF03059 NAS: Nicotianamine sy 47.1 17 0.00037 24.4 2.0 18 1-18 212-229 (276)
193 PF14117 DUF4287: Domain of un 47.1 22 0.00048 18.4 2.0 14 52-65 15-28 (61)
194 COG2518 Pcm Protein-L-isoaspar 46.5 19 0.00041 23.3 2.1 17 4-20 154-170 (209)
195 PF14814 UB2H: Bifunctional tr 46.2 19 0.0004 19.6 1.8 24 48-71 3-26 (85)
196 PRK13605 endoribonuclease SymE 46.1 11 0.00023 22.1 0.8 13 58-70 44-56 (113)
197 PLN02781 Probable caffeoyl-CoA 45.3 19 0.00042 23.2 2.0 20 2-22 161-180 (234)
198 PRK15450 signal transduction p 44.8 17 0.00037 20.0 1.4 18 48-65 68-85 (85)
199 PF00786 PBD: P21-Rho-binding 44.8 20 0.00043 18.1 1.6 21 51-71 24-44 (59)
200 cd04276 ZnMc_MMP_like_2 Zinc-d 44.7 34 0.00073 21.8 3.0 21 52-72 28-48 (197)
201 PF06557 DUF1122: Protein of u 44.7 16 0.00035 22.8 1.5 54 2-72 69-122 (170)
202 PF02636 Methyltransf_28: Puta 44.1 24 0.00051 22.9 2.3 22 1-22 176-197 (252)
203 TIGR03366 HpnZ_proposed putati 43.8 66 0.0014 20.8 4.4 21 2-22 201-221 (280)
204 COG2922 Smg Uncharacterized pr 43.8 41 0.0009 20.6 3.1 23 49-71 18-40 (157)
205 PF01189 Nol1_Nop2_Fmu: NOL1/N 43.7 6.1 0.00013 26.4 -0.5 23 1-23 197-223 (283)
206 PF04361 DUF494: Protein of un 43.6 43 0.00093 20.5 3.3 24 49-72 18-41 (155)
207 PRK04280 arginine repressor; P 43.6 27 0.00058 21.2 2.3 22 48-69 15-36 (148)
208 PF11590 DNAPolymera_Pol: DNA 43.0 22 0.00047 16.9 1.5 15 55-69 1-15 (41)
209 PF09400 DUF2002: Protein of u 42.7 33 0.00071 19.9 2.4 20 53-72 4-23 (111)
210 PF01316 Arg_repressor: Argini 42.3 28 0.00062 18.4 2.1 22 48-69 16-37 (70)
211 PRK03430 hypothetical protein; 42.1 27 0.00057 21.6 2.2 25 48-72 17-41 (157)
212 PRK09662 GspL-like protein; Pr 41.9 26 0.00056 23.7 2.3 20 55-74 8-27 (286)
213 PRK00110 hypothetical protein; 41.7 69 0.0015 21.2 4.2 20 6-25 87-106 (245)
214 TIGR03798 ocin_TIGR03798 bacte 41.2 34 0.00073 17.5 2.2 17 52-68 25-41 (64)
215 PF06200 tify: tify domain; I 41.0 13 0.00027 17.2 0.5 13 12-24 13-25 (36)
216 COG3019 Predicted metal-bindin 40.9 34 0.00073 20.9 2.4 18 55-72 40-57 (149)
217 TIGR00336 pyrE orotate phospho 40.6 81 0.0018 19.3 4.2 17 9-25 105-121 (173)
218 PRK12378 hypothetical protein; 40.5 28 0.00061 22.9 2.2 20 6-25 84-103 (235)
219 PF08373 RAP: RAP domain; Int 40.1 30 0.00065 16.9 1.9 14 58-71 24-37 (58)
220 COG0421 SpeE Spermidine syntha 39.9 32 0.00069 23.2 2.4 17 2-18 173-189 (282)
221 PRK01544 bifunctional N5-gluta 39.8 23 0.0005 25.7 1.9 17 1-17 251-267 (506)
222 KOG2798 Putative trehalase [Ca 39.7 1.3E+02 0.0029 21.1 5.3 58 2-72 279-336 (369)
223 PF01436 NHL: NHL repeat; Int 39.6 19 0.0004 15.2 0.9 11 10-20 10-20 (28)
224 KOG1269 SAM-dependent methyltr 39.1 15 0.00032 25.7 0.8 65 2-72 198-266 (364)
225 PF11899 DUF3419: Protein of u 39.1 25 0.00054 24.7 1.9 22 2-23 317-338 (380)
226 TIGR03709 PPK2_rel_1 polyphosp 39.0 45 0.00099 22.3 3.1 64 2-72 103-166 (264)
227 PF07076 DUF1344: Protein of u 38.7 27 0.00058 18.2 1.5 17 6-22 35-51 (61)
228 PRK02304 adenine phosphoribosy 38.4 94 0.002 19.0 4.4 20 52-71 128-147 (175)
229 PF13344 Hydrolase_6: Haloacid 37.7 32 0.0007 19.1 1.9 22 47-68 37-58 (101)
230 PF08704 GCD14: tRNA methyltra 37.4 15 0.00032 24.3 0.6 20 2-21 128-148 (247)
231 PF00156 Pribosyltran: Phospho 37.3 76 0.0017 17.6 4.3 14 11-24 87-100 (125)
232 PF08671 SinI: Anti-repressor 37.2 28 0.0006 15.4 1.3 16 54-69 2-20 (30)
233 PRK06132 hypothetical protein; 37.1 27 0.00059 24.4 1.8 21 2-22 324-344 (359)
234 PF11455 DUF3018: Protein of 36.9 53 0.0012 17.3 2.5 20 54-73 5-24 (65)
235 PF02390 Methyltransf_4: Putat 36.7 15 0.00033 23.1 0.6 18 2-19 116-133 (195)
236 PF01709 Transcrip_reg: Transc 36.3 11 0.00025 24.5 -0.1 19 6-24 83-101 (234)
237 PF13167 GTP-bdg_N: GTP-bindin 36.3 47 0.001 18.7 2.4 21 51-71 7-27 (95)
238 COG2521 Predicted archaeal met 36.1 27 0.00059 23.4 1.7 52 2-75 228-279 (287)
239 COG5459 Predicted rRNA methyla 35.7 41 0.00089 24.0 2.5 19 2-20 208-226 (484)
240 PF03514 GRAS: GRAS domain fam 35.7 26 0.00056 24.4 1.6 20 53-72 311-330 (374)
241 PF08149 BING4CT: BING4CT (NUC 35.6 51 0.0011 18.1 2.4 28 38-65 45-72 (80)
242 COG1724 Predicted RNA binding 35.5 64 0.0014 17.0 2.7 21 52-72 7-27 (66)
243 PRK12560 adenine phosphoribosy 35.5 1.1E+02 0.0024 19.1 5.7 58 8-74 110-176 (187)
244 COG1438 ArgR Arginine represso 35.4 40 0.00087 20.7 2.2 22 48-69 17-38 (150)
245 PF14826 FACT-Spt16_Nlob: FACT 35.2 26 0.00057 21.5 1.4 19 54-72 142-160 (163)
246 PF10354 DUF2431: Domain of un 35.2 41 0.0009 20.6 2.3 18 2-19 108-125 (166)
247 PF03793 PASTA: PASTA domain; 34.9 62 0.0014 15.9 2.9 21 52-72 9-29 (63)
248 PF07021 MetW: Methionine bios 34.8 88 0.0019 20.0 3.7 31 46-76 140-170 (193)
249 COG0220 Predicted S-adenosylme 34.1 46 0.001 21.6 2.5 62 2-72 147-221 (227)
250 cd03422 YedF YedF is a bacteri 33.8 73 0.0016 16.4 3.7 25 53-77 38-62 (69)
251 PRK13812 orotate phosphoribosy 33.8 1.2E+02 0.0026 18.8 5.3 57 8-74 103-167 (176)
252 cd00132 CRIB PAK (p21 activate 33.3 43 0.00094 15.7 1.7 15 53-67 27-41 (42)
253 cd04723 HisA_HisF Phosphoribos 33.1 1.4E+02 0.0029 19.3 5.3 24 47-71 194-217 (233)
254 COG3315 O-Methyltransferase in 32.9 84 0.0018 21.3 3.6 67 1-71 191-262 (297)
255 TIGR03685 L21P_arch 50S riboso 32.7 1E+02 0.0022 17.7 3.6 29 38-68 5-33 (105)
256 cd05831 Ribosomal_P1 Ribosomal 32.7 67 0.0014 18.3 2.7 26 46-71 12-37 (103)
257 cd04882 ACT_Bt0572_2 C-termina 32.5 50 0.0011 16.0 2.1 16 53-68 49-64 (65)
258 PF13399 LytR_C: LytR cell env 32.2 52 0.0011 17.6 2.2 25 48-72 12-36 (90)
259 PF06897 DUF1269: Protein of u 32.0 62 0.0013 18.4 2.5 19 2-20 45-63 (102)
260 PRK14702 insertion element IS2 31.9 50 0.0011 21.7 2.4 25 46-70 158-182 (262)
261 COG4122 Predicted O-methyltran 31.8 58 0.0013 21.2 2.6 22 2-24 149-170 (219)
262 cd04908 ACT_Bt0572_1 N-termina 31.7 58 0.0013 16.2 2.2 16 53-68 49-64 (66)
263 cd03423 SirA SirA (also known 31.7 80 0.0017 16.2 3.8 27 53-79 38-64 (69)
264 cd01414 SAICAR_synt_Sc non-met 31.7 89 0.0019 21.1 3.6 50 11-69 201-251 (279)
265 KOG0121 Nuclear cap-binding pr 31.5 82 0.0018 19.2 3.0 33 52-84 48-86 (153)
266 PRK05066 arginine repressor; P 31.4 41 0.0009 20.6 1.8 20 48-67 20-39 (156)
267 PRK06402 rpl12p 50S ribosomal 31.3 1.1E+02 0.0024 17.7 3.6 24 47-70 12-35 (106)
268 PHA00457 inhibitor of host bac 31.3 67 0.0015 16.6 2.3 13 62-74 48-60 (63)
269 PRK11018 hypothetical protein; 31.3 89 0.0019 16.6 3.7 27 52-78 46-72 (78)
270 PRK03094 hypothetical protein; 31.2 56 0.0012 17.9 2.1 23 51-73 7-29 (80)
271 PF13319 DUF4090: Protein of u 31.0 66 0.0014 17.6 2.3 24 48-71 55-78 (84)
272 PLN02823 spermine synthase 30.8 47 0.001 22.9 2.2 16 2-17 202-218 (336)
273 cd08258 Zn_ADH4 Alcohol dehydr 30.4 1.5E+02 0.0034 19.4 4.6 21 2-22 247-267 (306)
274 PF01536 SAM_decarbox: Adenosy 30.3 1.3E+02 0.0028 20.9 4.2 29 48-76 29-57 (331)
275 cd04909 ACT_PDH-BS C-terminal 30.3 55 0.0012 16.3 2.0 15 54-68 55-69 (69)
276 COG4808 Uncharacterized protei 29.9 51 0.0011 20.1 2.0 22 48-69 130-151 (152)
277 COG3669 Alpha-L-fucosidase [Ca 29.6 86 0.0019 22.6 3.3 24 48-71 50-73 (430)
278 cd00291 SirA_YedF_YeeD SirA, Y 29.4 84 0.0018 15.7 3.8 24 53-76 38-61 (69)
279 cd05167 PI4Kc_III_alpha Phosph 29.4 1.3E+02 0.0029 20.6 4.1 30 56-85 76-109 (311)
280 PF00403 HMA: Heavy-metal-asso 29.2 58 0.0013 15.9 1.9 16 52-67 47-62 (62)
281 cd05832 Ribosomal_L12p Ribosom 29.0 1.2E+02 0.0026 17.5 3.5 22 47-68 12-33 (106)
282 cd08237 ribitol-5-phosphate_DH 28.8 61 0.0013 21.7 2.5 19 2-20 239-257 (341)
283 COG0541 Ffh Signal recognition 28.7 65 0.0014 23.4 2.6 23 2-24 204-226 (451)
284 cd03420 SirA_RHOD_Pry_redox Si 28.7 92 0.002 15.9 3.7 27 53-79 38-64 (69)
285 COG0549 ArcC Carbamate kinase 28.6 60 0.0013 22.3 2.3 36 48-83 131-174 (312)
286 TIGR02608 delta_60_rpt delta-6 28.5 36 0.00078 17.1 1.0 15 8-22 7-21 (55)
287 TIGR03318 YdfZ_fam putative se 28.4 46 0.001 17.4 1.4 16 5-20 7-22 (65)
288 cd04411 Ribosomal_P1_P2_L12p R 28.2 1.2E+02 0.0027 17.3 3.7 24 47-70 12-35 (105)
289 COG4353 Uncharacterized conser 28.2 50 0.0011 20.7 1.8 21 2-23 76-96 (192)
290 PF01564 Spermine_synth: Sperm 28.2 26 0.00055 22.9 0.6 18 2-19 174-191 (246)
291 PF09286 Pro-kuma_activ: Pro-k 28.1 79 0.0017 18.5 2.6 24 52-75 62-85 (143)
292 TIGR01202 bchC 2-desacetyl-2-h 28.1 57 0.0012 21.6 2.2 19 2-20 214-232 (308)
293 PRK13943 protein-L-isoaspartat 27.9 56 0.0012 22.4 2.2 17 3-19 164-180 (322)
294 PHA03411 putative methyltransf 27.9 52 0.0011 22.3 2.0 17 52-68 193-209 (279)
295 PF12616 DUF3775: Protein of u 27.8 1E+02 0.0022 16.6 2.8 27 37-64 18-44 (75)
296 COG1060 ThiH Thiamine biosynth 27.8 72 0.0016 22.4 2.7 24 49-72 334-357 (370)
297 KOG2331 Predicted glycosylhydr 27.5 82 0.0018 23.0 2.9 24 2-25 194-217 (526)
298 PF08123 DOT1: Histone methyla 27.4 55 0.0012 20.9 2.0 25 2-26 141-165 (205)
299 PF01188 MR_MLE: Mandelate rac 27.0 63 0.0014 16.4 1.9 18 2-20 2-19 (67)
300 PRK10309 galactitol-1-phosphat 26.9 61 0.0013 21.6 2.2 20 2-21 243-262 (347)
301 PF14001 YdfZ: YdfZ protein 26.8 45 0.00098 17.5 1.2 16 5-20 6-21 (64)
302 KOG1331 Predicted methyltransf 26.7 53 0.0011 22.4 1.8 30 52-81 255-285 (293)
303 PF09863 DUF2090: Uncharacteri 26.4 2.3E+02 0.0049 19.7 5.6 26 2-27 165-190 (311)
304 PRK09880 L-idonate 5-dehydroge 26.4 64 0.0014 21.6 2.2 19 2-20 249-267 (343)
305 PF01596 Methyltransf_3: O-met 25.7 77 0.0017 20.2 2.4 16 5-20 63-78 (205)
306 KOG2972 Uncharacterized conser 25.7 38 0.00083 22.7 1.0 20 5-24 113-132 (276)
307 COG1092 Predicted SAM-dependen 25.4 66 0.0014 22.8 2.2 21 1-21 318-338 (393)
308 PRK13961 phosphoribosylaminoim 25.2 1.5E+02 0.0033 20.2 3.8 45 11-67 215-263 (296)
309 cd00895 PI3Kc_C2_beta Phosphoi 25.2 1.8E+02 0.0038 20.5 4.2 30 56-85 114-147 (354)
310 PRK00455 pyrE orotate phosphor 25.1 1.8E+02 0.004 18.2 5.0 54 11-74 112-173 (202)
311 PF01120 Alpha_L_fucos: Alpha- 25.1 1E+02 0.0023 21.1 3.1 24 48-71 87-110 (346)
312 KOG2698 GTP cyclohydrolase I [ 24.9 2.1E+02 0.0046 18.8 4.3 51 5-62 189-245 (247)
313 PRK05298 excinuclease ABC subu 24.8 79 0.0017 23.8 2.6 30 47-76 162-191 (652)
314 TIGR02822 adh_fam_2 zinc-bindi 24.8 78 0.0017 21.1 2.4 20 2-21 237-256 (329)
315 cd04883 ACT_AcuB C-terminal AC 24.7 94 0.002 15.4 2.3 18 52-69 52-69 (72)
316 PLN02476 O-methyltransferase 24.7 2.3E+02 0.0049 19.1 6.4 21 2-23 211-231 (278)
317 PRK10975 TDP-fucosamine acetyl 24.5 66 0.0014 19.7 1.9 19 53-71 14-32 (194)
318 cd04790 HTH_Cfa-like_unk Helix 24.4 91 0.002 19.2 2.5 23 48-70 112-134 (172)
319 KOG3451 Uncharacterized conser 24.3 51 0.0011 17.5 1.2 17 4-20 22-38 (71)
320 PF11250 DUF3049: Protein of u 24.3 1E+02 0.0022 15.7 2.2 15 10-24 24-38 (56)
321 PHA02517 putative transposase 24.2 75 0.0016 20.7 2.2 26 46-71 175-200 (277)
322 PF10006 DUF2249: Uncharacteri 24.2 1.1E+02 0.0024 15.6 2.5 18 4-21 18-35 (69)
323 PRK10347 cell filamentation pr 24.1 96 0.0021 19.8 2.6 32 37-68 128-160 (200)
324 KOG1359 Glycine C-acetyltransf 24.0 49 0.0011 23.1 1.3 58 9-70 283-341 (417)
325 COG1458 Predicted DNA-binding 24.0 1.3E+02 0.0028 19.6 3.1 34 38-71 165-199 (221)
326 PF13523 Acetyltransf_8: Acety 23.7 95 0.0021 17.9 2.4 23 54-76 124-146 (152)
327 PF03662 Glyco_hydro_79n: Glyc 23.6 57 0.0012 22.5 1.6 18 52-69 109-126 (319)
328 PF06711 DUF1198: Protein of u 23.4 65 0.0014 19.7 1.6 21 48-68 85-105 (148)
329 PRK00304 hypothetical protein; 23.2 78 0.0017 17.1 1.8 18 3-20 39-56 (75)
330 TIGR03253 oxalate_frc formyl-C 23.2 91 0.002 22.0 2.6 23 50-72 316-338 (415)
331 PF14403 CP_ATPgrasp_2: Circul 23.1 65 0.0014 23.3 1.9 26 49-74 357-385 (445)
332 cd06563 GH20_chitobiase-like T 23.1 70 0.0015 22.0 2.0 27 48-74 79-105 (357)
333 PRK15128 23S rRNA m(5)C1962 me 23.0 76 0.0016 22.4 2.1 19 2-20 322-340 (396)
334 PRK04140 hypothetical protein; 23.0 97 0.0021 21.3 2.6 31 51-81 3-34 (317)
335 COG2058 RPP1A Ribosomal protei 22.9 1.7E+02 0.0037 17.0 3.5 31 38-70 5-35 (109)
336 PF13405 EF-hand_6: EF-hand do 22.9 79 0.0017 13.2 2.9 19 47-65 12-31 (31)
337 PF01135 PCMT: Protein-L-isoas 22.8 30 0.00064 22.1 0.1 16 4-19 157-172 (209)
338 cd06542 GH18_EndoS-like Endo-b 22.6 80 0.0017 20.3 2.1 22 1-22 133-154 (255)
339 cd05175 PI3Kc_IA_alpha Phospho 22.6 2.3E+02 0.005 20.0 4.4 30 56-85 121-154 (366)
340 KOG2535 RNA polymerase II elon 22.5 67 0.0014 22.9 1.8 21 48-68 299-319 (554)
341 KOG3010 Methyltransferase [Gen 22.4 2.2E+02 0.0048 19.2 4.0 23 2-24 119-141 (261)
342 PHA02126 hypothetical protein 22.4 60 0.0013 19.3 1.3 10 11-20 52-61 (153)
343 PF12912 N_NLPC_P60: NLPC_P60 22.4 87 0.0019 18.1 2.0 21 47-67 102-122 (124)
344 PF05134 T2SL: Type II secreti 22.3 1.1E+02 0.0025 19.5 2.7 22 53-74 113-134 (230)
345 PF13602 ADH_zinc_N_2: Zinc-bi 22.2 23 0.0005 19.9 -0.5 16 3-19 36-51 (127)
346 PRK11509 hydrogenase-1 operon 22.2 1.8E+02 0.004 17.3 3.4 56 1-63 57-122 (132)
347 PF05051 COX17: Cytochrome C o 22.2 85 0.0018 15.6 1.6 33 36-68 17-49 (49)
348 TIGR00746 arcC carbamate kinas 22.1 1.3E+02 0.0028 20.6 3.0 21 49-69 130-150 (310)
349 PRK04966 hypothetical protein; 22.0 86 0.0019 16.8 1.8 18 3-20 40-57 (72)
350 PLN02586 probable cinnamyl alc 22.0 94 0.002 21.1 2.4 19 2-20 261-279 (360)
351 PF12419 DUF3670: SNF2 Helicas 21.9 91 0.002 18.5 2.1 19 47-65 79-97 (141)
352 cd03067 PDI_b_PDIR_N PDIb fami 21.8 92 0.002 18.1 2.0 21 1-21 39-59 (112)
353 PF10672 Methyltrans_SAM: S-ad 21.8 32 0.0007 23.2 0.1 20 1-20 220-239 (286)
354 TIGR00423 radical SAM domain p 21.7 1.3E+02 0.0028 20.2 3.0 22 51-72 282-303 (309)
355 TIGR03708 poly_P_AMP_trns poly 21.7 1.1E+02 0.0024 22.5 2.7 64 2-72 87-150 (493)
356 PRK05398 formyl-coenzyme A tra 21.6 1E+02 0.0022 21.8 2.6 23 50-72 317-339 (416)
357 PF12385 Peptidase_C70: Papain 21.4 90 0.0019 19.5 2.0 23 48-70 92-114 (166)
358 PRK03525 crotonobetainyl-CoA:c 21.3 1.1E+02 0.0023 21.6 2.6 23 50-72 301-323 (405)
359 COG0161 BioA Adenosylmethionin 21.1 55 0.0012 23.7 1.2 22 2-23 238-259 (449)
360 PRK14966 unknown domain/N5-glu 21.0 83 0.0018 22.6 2.0 17 2-19 364-380 (423)
361 PF05711 TylF: Macrocin-O-meth 20.9 31 0.00067 22.8 -0.1 21 2-22 195-215 (248)
362 PRK13209 L-xylulose 5-phosphat 20.9 1.4E+02 0.003 19.4 3.0 15 57-71 62-76 (283)
363 cd00893 PI4Kc_III Phosphoinosi 20.8 2.5E+02 0.0054 19.0 4.2 30 56-85 55-88 (289)
364 PF06794 UPF0270: Uncharacteri 20.8 76 0.0017 16.9 1.4 18 3-20 40-57 (70)
365 cd08784 Death_DRs Death Domain 20.7 1.1E+02 0.0025 16.2 2.1 21 52-72 9-29 (79)
366 PRK09409 IS2 transposase TnpB; 20.7 98 0.0021 20.8 2.3 25 46-70 197-221 (301)
367 cd06155 eu_AANH_C_1 A group of 20.7 83 0.0018 17.3 1.7 22 53-74 31-52 (101)
368 smart00812 Alpha_L_fucos Alpha 20.6 1.4E+02 0.0031 21.0 3.1 24 48-71 77-100 (384)
369 TIGR02825 B4_12hDH leukotriene 20.6 1E+02 0.0023 20.2 2.4 18 3-20 221-238 (325)
370 TIGR03451 mycoS_dep_FDH mycoth 20.5 97 0.0021 20.8 2.2 19 2-20 259-277 (358)
371 TIGR01367 pyrE_Therm orotate p 20.5 1E+02 0.0022 19.3 2.2 17 9-25 102-118 (187)
372 PLN02293 adenine phosphoribosy 20.5 64 0.0014 20.3 1.2 17 8-24 121-137 (187)
373 cd06568 GH20_SpHex_like A subg 20.4 1E+02 0.0022 21.1 2.3 27 48-74 68-94 (329)
374 cd08230 glucose_DH Glucose deh 20.4 1.1E+02 0.0023 20.6 2.4 21 2-22 252-272 (355)
375 cd01513 Translation_factor_III 20.3 89 0.0019 16.8 1.7 14 7-20 80-93 (102)
376 PRK09997 hydroxypyruvate isome 20.3 1.5E+02 0.0032 19.1 3.0 19 52-70 40-58 (258)
377 TIGR02819 fdhA_non_GSH formald 20.3 1E+02 0.0022 21.4 2.3 20 2-21 282-301 (393)
378 PF10281 Ish1: Putative stress 20.2 1.1E+02 0.0024 13.8 2.1 18 52-69 4-21 (38)
379 COG0106 HisA Phosphoribosylfor 20.2 1.6E+02 0.0034 19.6 3.0 25 47-72 80-104 (241)
380 PTZ00445 p36-lilke protein; Pr 20.1 2.2E+02 0.0049 18.6 3.7 19 54-72 80-98 (219)
381 cd02742 GH20_hexosaminidase Be 20.1 92 0.002 20.9 2.0 27 48-74 65-91 (303)
382 PRK11783 rlmL 23S rRNA m(2)G24 20.1 93 0.002 23.6 2.2 17 2-18 639-655 (702)
383 COG0107 HisF Imidazoleglycerol 20.1 2.5E+02 0.0055 18.8 3.9 18 46-63 78-95 (256)
384 PF14794 DUF4479: Domain of un 20.0 1E+02 0.0023 16.4 1.9 18 52-69 48-68 (73)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.70 E-value=3.2e-17 Score=109.63 Aligned_cols=85 Identities=42% Similarity=0.653 Sum_probs=72.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCC-CCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCceE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPE-VPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGNFW 79 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~-~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 79 (85)
||+||+++|+|||+|+|+|.+.|+ ....+..++....+|++|+..+++|++||.+||+.++.++||....+...+..++
T Consensus 257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~ 336 (342)
T KOG3178|consen 257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYS 336 (342)
T ss_pred HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccc
Confidence 699999999999999999999885 2222212334578999999888789999999999999999999999999988999
Q ss_pred EEEEEC
Q 042653 80 VMEFYK 85 (85)
Q Consensus 80 ~ie~~~ 85 (85)
+||++|
T Consensus 337 ~Ie~~k 342 (342)
T KOG3178|consen 337 VIEFHK 342 (342)
T ss_pred hheeCC
Confidence 999986
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.54 E-value=7e-15 Score=94.47 Aligned_cols=61 Identities=25% Similarity=0.583 Sum_probs=50.8
Q ss_pred CHHHHHhhCCCC--CEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHH
Q 042653 1 LLKNCYKSIPED--GKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLAT 62 (85)
Q Consensus 1 iL~~~~~al~pg--grlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~ 62 (85)
||+|+++||+|| |+|+|+|.++++....+........+|++|++.+ +|++||.+||++||+
T Consensus 179 iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 179 ILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp HHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 699999999999 9999999999988766543222358999999876 799999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.11 E-value=3.1e-10 Score=75.28 Aligned_cols=66 Identities=9% Similarity=0.253 Sum_probs=46.0
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHH----HHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDV----LMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl----~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+|++++++|+|||+++|+|.+.+++..+.. ..+.+. .|... -..-++.+||.+||++|||+.++++
T Consensus 236 il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 236 MCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFS--VLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccc--cccCCCHHHHHHHHHHcCCCeeEec
Confidence 589999999999999999998876543321 122332 12111 1123558999999999999988764
No 4
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.50 E-value=7.1e-08 Score=61.69 Aligned_cols=58 Identities=22% Similarity=0.390 Sum_probs=47.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
|++|+++|+|+|-|+|-|.+...+. . .+|- .+++-.||.+.|++||++||++++....
T Consensus 144 L~RCk~~L~~~G~IvvKEN~~~~~~--~-------~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 144 LKRCKQALKPNGVIVVKENVSSSGF--D-------EFDE-----EDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp HHHHHHHEEEEEEEEEEEEEESSSE--E-------EEET-----TTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred HHHHHHhCcCCcEEEEEecCCCCCC--c-------ccCC-----ccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 8999999999999999999876431 1 4554 3577889999999999999999987653
No 5
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.49 E-value=1.3e-06 Score=54.83 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=52.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhc---C-------CC---------ccccCHHHHHHHH
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQ---S-------PG---------GKERTRHEFMTLA 61 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~---~-------~~---------g~~rt~~e~~~ll 61 (85)
+|+++++.|+|||++++.+...+... +. ...++..+... . .+ ....+.++|.++|
T Consensus 125 ~l~~~~~~L~~gG~l~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (223)
T TIGR01934 125 ALREMYRVLKPGGRLVILEFSKPANA--LL----KKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAML 198 (223)
T ss_pred HHHHHHHHcCCCcEEEEEEecCCCch--hh----HHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHH
Confidence 37889999999999999997655331 11 11222222110 0 00 1234789999999
Q ss_pred HhcCCCeeEEEecCCc-eEEEEEEC
Q 042653 62 TAAGFSGISCERAIGN-FWVMEFYK 85 (85)
Q Consensus 62 ~~aGf~~~~~~~~~~~-~~~ie~~~ 85 (85)
+++||+.+.+.+..+. ..+++++|
T Consensus 199 ~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 199 KEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHcCCccceeeeeecceeeEEEecC
Confidence 9999999999887654 66777765
No 6
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.46 E-value=2.1e-06 Score=54.44 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=52.8
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHh----hcCCC------------ccccCHHHHHHHHHhc
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMM----IQSPG------------GKERTRHEFMTLATAA 64 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~----~~~~~------------g~~rt~~e~~~ll~~a 64 (85)
+|+++++.|+|||+++++|...++... ... ....++..++ ....+ ...++.++|.+++++|
T Consensus 140 ~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 216 (239)
T PRK00216 140 ALREMYRVLKPGGRLVILEFSKPTNPP--LKK-AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEA 216 (239)
T ss_pred HHHHHHHhccCCcEEEEEEecCCCchH--HHH-HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 478899999999999999987654321 100 0011111000 00001 1235889999999999
Q ss_pred CCCeeEEEecC-CceEEEEEEC
Q 042653 65 GFSGISCERAI-GNFWVMEFYK 85 (85)
Q Consensus 65 Gf~~~~~~~~~-~~~~~ie~~~ 85 (85)
||+.+++.... +..+++.++|
T Consensus 217 Gf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 217 GFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred CCceeeeeeeecCcEEEEEEec
Confidence 99999988754 5678888765
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.45 E-value=6.5e-08 Score=62.17 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=44.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhc-----------------CCCccccCHHHHHHHHHh
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQ-----------------SPGGKERTRHEFMTLATA 63 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~-----------------~~~g~~rt~~e~~~ll~~ 63 (85)
+|++++++|+|||++++.|.+.+++..... .+..+.+... ...-...|.+++.+++++
T Consensus 143 ~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 217 (239)
T TIGR00740 143 LLTKIYEGLNPNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKN 217 (239)
T ss_pred HHHHHHHhcCCCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 478999999999999999987765432111 1222222110 001235799999999999
Q ss_pred cCCCeeEEE
Q 042653 64 AGFSGISCE 72 (85)
Q Consensus 64 aGf~~~~~~ 72 (85)
|||+.+++.
T Consensus 218 aGF~~~~~~ 226 (239)
T TIGR00740 218 VGFSHVELW 226 (239)
T ss_pred cCCchHHHH
Confidence 999976654
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.32 E-value=4.3e-06 Score=54.72 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=49.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHH--h-hcCCC-----------ccccCHHHHHHHHHhcCC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLM--M-IQSPG-----------GKERTRHEFMTLATAAGF 66 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m--~-~~~~~-----------g~~rt~~e~~~ll~~aGf 66 (85)
.|++++++|+|||++++.|...++....... ....++..+ + ..... ..-.+.+|+.++++++||
T Consensus 164 ~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF 241 (261)
T PLN02233 164 AMQEMYRVLKPGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGF 241 (261)
T ss_pred HHHHHHHHcCcCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCC
Confidence 3789999999999999999876543211110 001111100 0 00000 223699999999999999
Q ss_pred CeeEEEecCC-ceEEEEE
Q 042653 67 SGISCERAIG-NFWVMEF 83 (85)
Q Consensus 67 ~~~~~~~~~~-~~~~ie~ 83 (85)
+.+....... ..++..+
T Consensus 242 ~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 242 SSAKHYEISGGLMGNLVA 259 (261)
T ss_pred CEEEEEEcCCCeeEEEEE
Confidence 9988877654 3444443
No 9
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.32 E-value=3.5e-06 Score=55.04 Aligned_cols=66 Identities=14% Similarity=0.304 Sum_probs=46.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
+++++++.|+|||++++.+.+.... .+.. ...++.++..+ .+..++.++|.++++++||..+++..
T Consensus 165 ~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~----~~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 165 VFKEAFRVLKPGGRFAISDVVLRGE--LPEE----IRNDAELYAGC-VAGALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred HHHHHHHHcCCCcEEEEEEeeccCC--CCHH----HHHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCceEEEe
Confidence 3789999999999999999876442 2211 12233333222 45568999999999999999987753
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.31 E-value=4.9e-06 Score=54.50 Aligned_cols=67 Identities=13% Similarity=0.292 Sum_probs=45.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
+|+++++.|+|||++++.|....+...... .+.-. ... ..-...+.++|.+++++|||+.+......
T Consensus 138 ~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~------~~~~~-~~~-~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 138 LFEKCYKWLKPNGILLITDYCADKIENWDE------EFKAY-IKK-RKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHHHcCCCcEEEEEEeccccccCcHH------HHHHH-HHh-cCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 478999999999999999987654321111 11111 110 12234689999999999999998887653
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.27 E-value=6.3e-06 Score=52.46 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=50.7
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhh----cC-----------CCccccCHHHHHHHHHhcC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMI----QS-----------PGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~----~~-----------~~g~~rt~~e~~~ll~~aG 65 (85)
+|+++++.|+|||++++.|...+... .........+...+-. .. ....-.+.+++.++++++|
T Consensus 133 ~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 210 (231)
T TIGR02752 133 VLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG 210 (231)
T ss_pred HHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 37889999999999999986544321 1100000111111100 00 0112257899999999999
Q ss_pred CCeeEEEecC-CceEEEEEEC
Q 042653 66 FSGISCERAI-GNFWVMEFYK 85 (85)
Q Consensus 66 f~~~~~~~~~-~~~~~ie~~~ 85 (85)
|+.+++.... +..+++.++|
T Consensus 211 f~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 211 FKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred CCeeEEEEcccceEEEEEEEC
Confidence 9999988776 5667777765
No 12
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.22 E-value=6.3e-06 Score=50.26 Aligned_cols=72 Identities=19% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHh---hcCCC-----------ccccCHHHHHHHHHhcCCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMM---IQSPG-----------GKERTRHEFMTLATAAGFS 67 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~---~~~~~-----------g~~rt~~e~~~ll~~aGf~ 67 (85)
|+++++.|+|||+++|.|...++..-.... .......... .+... ..-.+.+|+.++|+++||+
T Consensus 64 l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~ 141 (160)
T PLN02232 64 MKEMYRVLKPGSRVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFS 141 (160)
T ss_pred HHHHHHHcCcCeEEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 789999999999999999875432111000 0000000000 00001 1225899999999999999
Q ss_pred eeEEEecC
Q 042653 68 GISCERAI 75 (85)
Q Consensus 68 ~~~~~~~~ 75 (85)
.+......
T Consensus 142 ~~~~~~~~ 149 (160)
T PLN02232 142 SACHYEIS 149 (160)
T ss_pred cceEEECc
Confidence 98776654
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.17 E-value=1.1e-05 Score=54.95 Aligned_cols=62 Identities=24% Similarity=0.344 Sum_probs=43.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
+|+++++.|+|||++++++.+.++.. ..+ ...|..+. ..+.+||.++++++||+.+++....
T Consensus 197 ~L~e~~rvLkPGG~LvIi~~~~p~~~----~~r--~~~~~~~~-------~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 197 GIKEAYRVLKIGGKACLIGPVHPTFW----LSR--FFADVWML-------FPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHHHHhcCCCcEEEEEEecCcchh----HHH--Hhhhhhcc-------CCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 37899999999999999876544321 110 11222221 2589999999999999998887654
No 14
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.08 E-value=4.2e-05 Score=48.70 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=60.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCceEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGNFWV 80 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ 80 (85)
+++.+.+.|+|||.|+++-....+..-.+. -...||.....-.+....|+.++..++.+++||+..+.+..+..--+
T Consensus 123 lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~---SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN~~ 199 (204)
T PF06080_consen 123 LFAGAARLLKPGGLLFLYGPFNRDGKFTSE---SNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDIDMPANNLL 199 (204)
T ss_pred HHHHHHHhCCCCCEEEEeCCcccCCEeCCc---HHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCcccccCCCCeE
Confidence 357788999999999999987655432221 23578877765445678899999999999999999999888754333
Q ss_pred EEEE
Q 042653 81 MEFY 84 (85)
Q Consensus 81 ie~~ 84 (85)
+.++
T Consensus 200 Lvfr 203 (204)
T PF06080_consen 200 LVFR 203 (204)
T ss_pred EEEe
Confidence 4443
No 15
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.06 E-value=2.2e-05 Score=54.95 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=45.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
+|++++++|+|||++++.|....+...... .... .. ..+...++.++|.++++++||+.+.+..
T Consensus 351 ~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~------~~~~-~~--~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 351 LFRSFFKWLKPGGKVLISDYCRSPGTPSPE------FAEY-IK--QRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred HHHHHHHHcCCCeEEEEEEeccCCCCCcHH------HHHH-HH--hcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 478999999999999999987654321111 1111 11 1245678999999999999999987654
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.99 E-value=2.5e-06 Score=55.20 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=22.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhh-------cCCC------------ccccCHHHHHHHHH
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMI-------QSPG------------GKERTRHEFMTLAT 62 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~-------~~~~------------g~~rt~~e~~~ll~ 62 (85)
|+++++.|+|||+++|+|...|+.+ .. ...+.+++.. +..+ .+-.+.+|+.++++
T Consensus 136 l~E~~RVLkPGG~l~ile~~~p~~~--~~----~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~ 209 (233)
T PF01209_consen 136 LREMYRVLKPGGRLVILEFSKPRNP--LL----RALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLE 209 (233)
T ss_dssp HHHHHHHEEEEEEEEEEEEEB-SSH--HH----HHHHHH-----------------------------------------
T ss_pred HHHHHHHcCCCeEEEEeeccCCCCc--hh----hceeeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999877542 11 1122222210 0001 11247889999999
Q ss_pred hcCCCeeEEEecC-CceEEEEEEC
Q 042653 63 AAGFSGISCERAI-GNFWVMEFYK 85 (85)
Q Consensus 63 ~aGf~~~~~~~~~-~~~~~ie~~~ 85 (85)
++||+.++..+.. +..++..+.|
T Consensus 210 ~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 210 EAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ------------------------
T ss_pred ccccccccccccccccccccccCC
Confidence 9999998887664 3445544443
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.97 E-value=2.1e-05 Score=50.92 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=42.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHH------------Hh-hcCCCccccCHHHHHHHHHhcCCC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVL------------MM-IQSPGGKERTRHEFMTLATAAGFS 67 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~------------m~-~~~~~g~~rt~~e~~~ll~~aGf~ 67 (85)
++++++++|+|||.+++.|.+..++...... ......+.. +. .....-..-|.++..++|++|||+
T Consensus 146 ~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~ 224 (247)
T PRK15451 146 LLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFE 224 (247)
T ss_pred HHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCch
Confidence 4789999999999999999876554322110 000011110 00 000011235899999999999998
Q ss_pred eeEE
Q 042653 68 GISC 71 (85)
Q Consensus 68 ~~~~ 71 (85)
.+..
T Consensus 225 ~v~~ 228 (247)
T PRK15451 225 HSEL 228 (247)
T ss_pred hHHH
Confidence 7654
No 18
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.96 E-value=7.8e-06 Score=48.76 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhc-CCCccccCHHHHHHHHHhcCCCeeE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQ-SPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~-~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+|+++++.|+|||.+++.+...+.. ... .......... ..+...+|.++|.++++++||++++
T Consensus 97 ~l~~l~~~LkpgG~l~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 97 FLKELSRLLKPGGYLVISDPNRDDP-SPR------SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHCEEEEEEEEEEEEBTTSH-HHH------HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEEcCCcch-hhh------HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 3789999999999999999765431 000 1111111111 1356779999999999999999875
No 19
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.94 E-value=6.4e-05 Score=50.69 Aligned_cols=68 Identities=16% Similarity=0.111 Sum_probs=43.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
+|++++++|+|||++++-..+.+.+....... . ..+.- |.. .--.+|.+++.+++++|||+.+++...
T Consensus 208 ~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-~-~~y~~-~~~---~~~lps~~~l~~~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 208 HLKQLKDQLVPGGELVLETLVIDGDENTVLVP-G-DRYAK-MRN---VYFIPSVPALKNWLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHHHHhcCCCcEEEEEEEEecCCCccccCc-h-hHHhc-Ccc---ceeCCCHHHHHHHHHHcCCceEEEEeC
Confidence 37899999999999988776666443221100 0 00100 100 001369999999999999999988754
No 20
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.92 E-value=6.3e-05 Score=50.70 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=43.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCCh--hhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSI--ESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~--~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.|++++++|+|||++++.+.+++.+..... ..++..+... . ...|.+++.+++++|||+.+++...
T Consensus 207 ~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv----~----flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 207 HLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNV----Y----FIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred HHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhcccc----c----cCCCHHHHHHHHHHCCCeEEEEEec
Confidence 378999999999999998877764332110 0111111110 0 1258999999999999999987754
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=97.86 E-value=0.00017 Score=48.93 Aligned_cols=73 Identities=14% Similarity=0.184 Sum_probs=43.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCC--ChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNT--SIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~--~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.++++++.|+|||+++|.+....+.... .........++-...... .-...+.++|.++++++||+.+++...
T Consensus 205 ~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 205 FVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQDIKTEDW 279 (340)
T ss_pred HHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCCeeEeeeC
Confidence 3688999999999999998754321111 100000111221111110 112358999999999999999887654
No 22
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.77 E-value=0.00032 Score=45.70 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=47.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHH-HHHhhc--C------------CCccccCHHHHHHHHHhcCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYD-VLMMIQ--S------------PGGKERTRHEFMTLATAAGF 66 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~d-l~m~~~--~------------~~g~~rt~~e~~~ll~~aGf 66 (85)
|+.+++.|+|||+++|.|...|+.+.....- ....+- +..+.. . +.-+.-+.+++.++++++||
T Consensus 139 L~E~~RVlKpgG~~~vle~~~p~~~~~~~~~-~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf 217 (238)
T COG2226 139 LKEMYRVLKPGGRLLVLEFSKPDNPVLRKAY-ILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGF 217 (238)
T ss_pred HHHHHHhhcCCeEEEEEEcCCCCchhhHHHH-HHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCc
Confidence 7899999999999999998877553221100 001111 111110 0 01122578899999999999
Q ss_pred CeeEEEecC-CceEEEE
Q 042653 67 SGISCERAI-GNFWVME 82 (85)
Q Consensus 67 ~~~~~~~~~-~~~~~ie 82 (85)
+.+...... +...+.-
T Consensus 218 ~~i~~~~~~~G~~~l~~ 234 (238)
T COG2226 218 EEVRYENLTFGIVALHR 234 (238)
T ss_pred eEEeeEeeeeeeEEEEE
Confidence 988855443 3334433
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.69 E-value=0.00023 Score=45.12 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=42.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
+|+++++.|+|||++++.+...+. ..... .+. ......+.++|.++++++||+.++.....
T Consensus 86 ~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~-------~~~------~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~ 146 (224)
T smart00828 86 LFSNISRHLKDGGHLVLADFIANL-LSAIE-------HEE------TTSYLVTREEWAELLARNNLRVVEGVDAS 146 (224)
T ss_pred HHHHHHHHcCCCCEEEEEEccccc-Ccccc-------ccc------cccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence 378899999999999999875432 11110 000 01124689999999999999998877553
No 24
>PRK08317 hypothetical protein; Provisional
Probab=97.62 E-value=0.00036 Score=43.96 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=40.8
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCC-CCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVP-NTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~-~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
+++++++.|+|||++++.+...+... ............... . .......+..+|.++++++||+.+.+..
T Consensus 106 ~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 106 ALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW--S-DHFADPWLGRRLPGLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH--H-hcCCCCcHHHHHHHHHHHcCCCceeEEE
Confidence 37899999999999999885322110 000000011111211 1 1123346678999999999999876643
No 25
>PRK04266 fibrillarin; Provisional
Probab=97.49 E-value=0.00046 Score=44.51 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=38.4
Q ss_pred HHHHHhhCCCCCEEEEE-eeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCc---
Q 042653 2 LKNCYKSIPEDGKVIVV-ESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGN--- 77 (85)
Q Consensus 2 L~~~~~al~pggrlli~-e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~--- 77 (85)
|+++++.|+|||+++|. ..- +-+.... . .+..++..++++++||+.++.......
T Consensus 159 L~~~~r~LKpGG~lvI~v~~~-~~d~~~~------------------~--~~~~~~~~~~l~~aGF~~i~~~~l~p~~~~ 217 (226)
T PRK04266 159 IDNAEFFLKDGGYLLLAIKAR-SIDVTKD------------------P--KEIFKEEIRKLEEGGFEILEVVDLEPYHKD 217 (226)
T ss_pred HHHHHHhcCCCcEEEEEEecc-cccCcCC------------------H--HHHHHHHHHHHHHcCCeEEEEEcCCCCcCC
Confidence 68899999999999994 321 0000000 0 022245569999999999988866433
Q ss_pred eEEEEE
Q 042653 78 FWVMEF 83 (85)
Q Consensus 78 ~~~ie~ 83 (85)
+-.+.+
T Consensus 218 h~~~v~ 223 (226)
T PRK04266 218 HAAVVA 223 (226)
T ss_pred eEEEEE
Confidence 444444
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.39 E-value=0.00012 Score=48.39 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
+++|.+.|+|||++++...+..+..... .. ....++..-..+++|..-+.+++...++++||++.++...
T Consensus 149 f~~~~~~LkpgG~~~lq~i~~~~~~~~~-~~--~~~~~~i~kyiFPgg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 149 FRKISRLLKPGGRLVLQTITHRDPPYHA-ER--RSSSDFIRKYIFPGGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp HHHHHHHSETTEEEEEEEEEE--HHHHH-CT--TCCCHHHHHHTSTTS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHhcCCCcEEEEEecccccccchh-hc--CCCceEEEEeeCCCCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 6889999999999999887765432110 00 0011333333367999999999999999999998887654
No 27
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.35 E-value=0.0009 Score=44.62 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=51.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
++++++.|+|||++++.....++.+... ..++..-..++||...|.++.....+++||.+.+....+
T Consensus 159 f~~~~~~L~~~G~~llh~I~~~~~~~~~-------~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 159 FKKVYALLKPGGRMLLHSITGPDQEFRR-------FPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhhcCCCceEEEEEecCCCccccc-------chHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 5789999999999999998777643311 234444334689999999999999999999998776543
No 28
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.25 E-value=0.00064 Score=46.02 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=41.1
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCC----ccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPG----GKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~----g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+|+++++.|+|||++++....... .. .............+...+ .+-+|.+|+.++++++||+++++.
T Consensus 217 ~L~~l~r~LkPGG~liist~nr~~---~~-~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 217 FCKSLSALTIPNGATVLSTINRTM---RA-YASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HHHHHHHHcCCCcEEEEEECCcCH---HH-HHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 378899999999999998743210 00 000000011111111112 235799999999999999998875
No 29
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.23 E-value=0.0017 Score=41.90 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=50.0
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHH---hhcCCCccccCHHHHHHHHHhcCCCeeEEEecCC-
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLM---MIQSPGGKERTRHEFMTLATAAGFSGISCERAIG- 76 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m---~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~- 76 (85)
.|+++++.|+|||+++.+|++..+... +..+++-.. +.....|...|.+-| +.|++|-|+.....+...
T Consensus 164 ~L~e~~rlLRpgG~iifiEHva~~y~~------~n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 164 QLNEVRRLLRPGGRIIFIEHVAGEYGF------WNRILQQVAEPLWHLESDGCVLTRDTG-ELLEDAEFSIDSCKRFNFG 236 (252)
T ss_pred HHHHHHHhcCCCcEEEEEecccccchH------HHHHHHHHhchhhheeccceEEehhHH-HHhhhcccccchhhcccCC
Confidence 488999999999999999998765432 122333221 122236777777555 567889999888776543
Q ss_pred -ceEEEEE
Q 042653 77 -NFWVMEF 83 (85)
Q Consensus 77 -~~~~ie~ 83 (85)
...+|+.
T Consensus 237 ttw~~V~~ 244 (252)
T KOG4300|consen 237 TTWVIVEP 244 (252)
T ss_pred ceEEEEec
Confidence 3444543
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.21 E-value=0.0015 Score=42.42 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=36.7
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHH-----HHHHH--hhcCCCccccCHHHHHHHHHhcCCCee
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSH-----YDVLM--MIQSPGGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~-----~dl~m--~~~~~~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
+|++++++|+|||++++.... ....+...-.... +.-.. .....+....+.++|.++|++|||+..
T Consensus 108 ~l~~~~~~LkpgG~l~~~~~~---~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 180 (255)
T PRK14103 108 LLVRWVDELAPGSWIAVQVPG---NFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVD 180 (255)
T ss_pred HHHHHHHhCCCCcEEEEEcCC---CcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEE
Confidence 378999999999999886321 1111110000000 11100 000112335789999999999999854
No 31
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.21 E-value=0.001 Score=42.40 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=39.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHH-H-HHHhhc-C---CCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHY-D-VLMMIQ-S---PGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~-d-l~m~~~-~---~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
+|+++.+.|+|||++++.... . ..... ..... . ...... . ..++..+.++|.++++++||+.+....
T Consensus 133 ~l~~~~~~L~~gG~l~v~~~~---~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 133 FVRACAKLVKPGGLVFFSTLN---R-NLKSY--LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHHHcCCCcEEEEEecC---C-ChHHH--HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 368899999999998876532 1 11100 00011 0 111000 0 113346889999999999999887753
No 32
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.10 E-value=0.0012 Score=42.84 Aligned_cols=73 Identities=7% Similarity=0.028 Sum_probs=40.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCCh-hhhhHHHHHHHH----hhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSI-ESKLNSHYDVLM----MIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~-~~~~~~~~dl~m----~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
+|+++++.|+|||+++++........-... ..++.....-.. .... -....+.+++.++++++||+++.+..+
T Consensus 131 ~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 131 VLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDPEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCHHHHHHHHHHCCCeEeeeeeE
Confidence 378899999999999987644221000000 000000000000 0000 122367899999999999999876644
No 33
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.06 E-value=0.00039 Score=45.50 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=45.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--ccCHHHHHHHHHhcCCCeeEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--ERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--~rt~~e~~~ll~~aGf~~~~~ 71 (85)
++|+++.|+|||.|++-|.-..|--.... +-...++....+-.+|.+ -.+.++.+.++++|||..++.
T Consensus 166 ~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 166 IKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred HHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 68999999999999999986543211100 011244444444322332 269999999999999997664
No 34
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.96 E-value=0.0016 Score=41.17 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=39.1
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHh-hcCC-----CccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMM-IQSP-----GGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~-~~~~-----~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+|+++++.|+|||.+++.....+ . ... .....+-... .... .....+.++|.++++++||+++++.
T Consensus 131 ~l~~~~~~L~~gG~l~i~~~~~~--~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 131 FIRACAQLLKPGGILFFSTINRT--P-KSY---LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred HHHHHHHhcCCCcEEEEEecCCC--c-hHH---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 36889999999999888754211 0 110 0011111111 1111 1234588999999999999998775
No 35
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.0022 Score=42.45 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=40.6
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhh-hhHHHHHHHH---------------hhcCCCccccCHHHHHHHHHhcC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIES-KLNSHYDVLM---------------MIQSPGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~-~~~~~~dl~m---------------~~~~~~g~~rt~~e~~~ll~~aG 65 (85)
|+..+++||||||+.+.|.---+. ++... .....+|... |+ .+=-+--+.+||..+.++||
T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~--~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLv-eSI~rfp~qe~f~~miedaG 273 (296)
T KOG1540|consen 197 LREAYRVLKPGGRFSCLEFSKVEN--EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLV-ESIRRFPPQEEFASMIEDAG 273 (296)
T ss_pred HHHHHHhcCCCcEEEEEEcccccc--HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHH-hhhhcCCCHHHHHHHHHHcC
Confidence 688999999999999999753321 11000 0012222221 10 00122357899999999999
Q ss_pred CCeeE
Q 042653 66 FSGIS 70 (85)
Q Consensus 66 f~~~~ 70 (85)
|..+.
T Consensus 274 F~~~~ 278 (296)
T KOG1540|consen 274 FSSVN 278 (296)
T ss_pred Ccccc
Confidence 99887
No 36
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.90 E-value=0.0071 Score=37.18 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCceEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGNFWVM 81 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 81 (85)
|+++.+.|+|||++++++... +...++.++++++||+...+...+-++--+
T Consensus 123 l~~~~~~Lk~gG~~~~~~~~~-----------------------------~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~ 173 (179)
T TIGR00537 123 LDELPEILKEGGRVQLIQSSL-----------------------------NGEPDTFDKLDERGFRYEIVAERGLFFEEL 173 (179)
T ss_pred HHhHHHhhCCCCEEEEEEecc-----------------------------CChHHHHHHHHhCCCeEEEEEEeecCceEE
Confidence 566777778888777765211 124677888999999998888777666655
Q ss_pred EEEC
Q 042653 82 EFYK 85 (85)
Q Consensus 82 e~~~ 85 (85)
+++|
T Consensus 174 ~~~~ 177 (179)
T TIGR00537 174 FAIK 177 (179)
T ss_pred EEEE
Confidence 5543
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=96.78 E-value=0.0026 Score=44.66 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=40.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+|+++++.|+|||++++.|.+.....+. .+. ......|+..+|.+++.++||...+
T Consensus 124 ~l~~~~r~Lk~gG~l~~~d~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 124 LAERMVKWLKVGGYIFFRESCFHQSGDS---------KRK-----NNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHhcCCCeEEEEEeccCCCCCcc---------ccc-----CCCCeecChHHHHHHHHHheeccCC
Confidence 4788999999999999999875433211 110 1234457899999999999998754
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.61 E-value=0.0037 Score=42.24 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=43.1
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCCh--hhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSI--ESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~--~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
|+.++++|+|||.|++--.+++.+..... ..++..+-.. + + .=|......|++++||+.+++...
T Consensus 202 L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--~--F----iPs~~~L~~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 202 LKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--W--F----IPSVAALKNWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--E--E----eCCHHHHHHHHHHcCCceEEEecC
Confidence 78899999999998887777765432110 1111111111 1 1 248899999999999999998754
No 39
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.46 E-value=0.009 Score=39.53 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=37.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCC------CC--CCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPE------VP--NTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~------~~--~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+|+.++++|+|+|++|+.= |+|= ++ ..++. ..+++ ...+-|-..+.+-+.|+.+||++.+..
T Consensus 170 LL~~i~~~l~p~G~lilAv-VlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAV-VLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred HHHHHHHHhCCCCEEEEEE-EecccccEEcCCCCCCCch----hhcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5899999999999888764 3331 11 10111 12222 111222222334478899999999987
Q ss_pred ecC
Q 042653 73 RAI 75 (85)
Q Consensus 73 ~~~ 75 (85)
+.|
T Consensus 240 r~P 242 (265)
T PF05219_consen 240 RLP 242 (265)
T ss_pred ccC
Confidence 765
No 40
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.012 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 3 KNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+.++++|||||.++|.|+......... --+..+ -++..-..+..+++||++....
T Consensus 150 a~vf~~LKPGGv~~V~dH~a~pG~~~~-------dt~~~~--------ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 150 AAVFKALKPGGVYLVEDHRADPGSGLS-------DTITLH--------RIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHhcCCCcEEEEEeccccCCCChh-------hhhhhc--------ccChHHHHHHHHhhcceeeeee
Confidence 567899999999999999876532211 111111 1455667888899999986544
No 41
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.07 E-value=0.039 Score=37.28 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=43.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCC--Cc-----cccCHHHHHHHHHhcCCCeeEEE-e
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSP--GG-----KERTRHEFMTLATAAGFSGISCE-R 73 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~--~g-----~~rt~~e~~~ll~~aGf~~~~~~-~ 73 (85)
|+.++.++.|||.||--.. |-++.-. +.-.++++ +| +-||..|..+|++.|||+-.+.. .
T Consensus 232 l~gl~~al~pgG~lIyTgQ--PwHPQle----------~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID 299 (311)
T PF12147_consen 232 LAGLARALEPGGYLIYTGQ--PWHPQLE----------MIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKIDQRID 299 (311)
T ss_pred HHHHHHHhCCCcEEEEcCC--CCCcchH----------HHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchhhheec
Confidence 5667889999997765542 2222111 11111111 22 35999999999999999975543 3
Q ss_pred cCCceEEEEEEC
Q 042653 74 AIGNFWVMEFYK 85 (85)
Q Consensus 74 ~~~~~~~ie~~~ 85 (85)
..+.++|--|++
T Consensus 300 ~~GIFTVSlA~r 311 (311)
T PF12147_consen 300 EWGIFTVSLARR 311 (311)
T ss_pred cCCceEEEeecC
Confidence 345667666543
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=95.99 E-value=0.05 Score=35.34 Aligned_cols=29 Identities=14% Similarity=-0.004 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCeeEEEecCCceEEEE
Q 042653 54 RHEFMTLATAAGFSGISCERAIGNFWVME 82 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~~~~~~~~~ie 82 (85)
.+++.+.+++.||+..++...+.+.+++-
T Consensus 219 ~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~ 247 (250)
T PRK00517 219 ADEVLEAYEEAGFTLDEVLERGEWVALVG 247 (250)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCEEEEEE
Confidence 45678889999999998887776666654
No 43
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=95.94 E-value=0.023 Score=39.37 Aligned_cols=64 Identities=8% Similarity=0.017 Sum_probs=42.3
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
++++++.|+|||++++.+...+....... ...+-+ .+++|...+.+++.+.++ .||.+.++...
T Consensus 250 l~~i~r~LkpGG~lvl~~i~~~~~~~~~~-----~~i~~y---ifp~g~lps~~~i~~~~~-~~~~v~d~~~~ 313 (383)
T PRK11705 250 FEVVRRCLKPDGLFLLHTIGSNKTDTNVD-----PWINKY---IFPNGCLPSVRQIAQASE-GLFVMEDWHNF 313 (383)
T ss_pred HHHHHHHcCCCcEEEEEEccCCCCCCCCC-----CCceee---ecCCCcCCCHHHHHHHHH-CCcEEEEEecC
Confidence 67899999999999998865543221110 112211 245777788888888766 58988776644
No 44
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=95.85 E-value=0.05 Score=34.13 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=34.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
++++++++|+|||++++++.+-.++...+ -+. -...+.+|+.++++ ||+.+..
T Consensus 116 ~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~~--------~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 116 LIANMQRCTKPGGYNLIVAAMDTADYPCT--------VGF--------PFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred HHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CCC--------CCccCHHHHHHHhC--CCeEEEe
Confidence 36889999999999888776544321100 000 01257788888887 8887665
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=95.64 E-value=0.06 Score=33.72 Aligned_cols=54 Identities=9% Similarity=0.023 Sum_probs=34.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
++++++++|+|||+++|++....+....+ .. .....+.+|..++|+ +|+.....
T Consensus 115 ~l~~~~~~LkpgG~lli~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 115 IIANMQAHTRPGGYNLIVAAMDTADYPCH--------MP--------FSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred HHHHHHHHhCCCcEEEEEEecccCCCCCC--------CC--------cCccCCHHHHHHHhC--CCeEEEee
Confidence 46889999999999888876543221110 00 011367888888886 47776655
No 46
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.59 E-value=0.066 Score=33.66 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=38.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+|++++++|+|||.+++.+...+. .. ...+.. . ..+....+.++|.+++..+ |+...+.
T Consensus 117 ~l~~~~~~L~~~G~l~~~~~~~~~---~~------~~~~~~--~-~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 117 ALSELARVLKPGGLLAFSTFGPGT---LH------ELRQSF--G-QHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHHHHcCCCcEEEEEeCCccC---HH------HHHHHH--H-HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 378899999999999987542221 11 111111 1 0134557899999999998 8876554
No 47
>PTZ00146 fibrillarin; Provisional
Probab=95.49 E-value=0.14 Score=34.51 Aligned_cols=62 Identities=10% Similarity=-0.108 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCC---ce
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIG---NF 78 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~---~~ 78 (85)
+.+++..|+|||+++|.-.....+..+++ .. ..+ +|. ++|+++||+.++.+...+ .+
T Consensus 220 ~~na~r~LKpGG~~vI~ika~~id~g~~p----------e~--------~f~-~ev-~~L~~~GF~~~e~v~L~Py~~~h 279 (293)
T PTZ00146 220 ALNAQYFLKNGGHFIISIKANCIDSTAKP----------EV--------VFA-SEV-QKLKKEGLKPKEQLTLEPFERDH 279 (293)
T ss_pred HHHHHHhccCCCEEEEEEeccccccCCCH----------HH--------HHH-HHH-HHHHHcCCceEEEEecCCccCCc
Confidence 45788899999999993211111111110 00 012 344 789999999988876643 35
Q ss_pred EEEEE
Q 042653 79 WVMEF 83 (85)
Q Consensus 79 ~~ie~ 83 (85)
+++.+
T Consensus 280 ~~v~~ 284 (293)
T PTZ00146 280 AVVIG 284 (293)
T ss_pred EEEEE
Confidence 66554
No 48
>PRK14968 putative methyltransferase; Provisional
Probab=95.03 E-value=0.17 Score=30.76 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=30.5
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
++++.+.|+|||.++++-.. ....+++.++++++||+...+...
T Consensus 131 i~~~~~~Lk~gG~~~~~~~~-----------------------------~~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 131 LDEVGRYLKPGGRILLLQSS-----------------------------LTGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred HHHHHHhcCCCeEEEEEEcc-----------------------------cCCHHHHHHHHHHCCCeeeeeeec
Confidence 57778888998887765310 012356778999999998776654
No 49
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.91 E-value=0.021 Score=37.94 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=34.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCee
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
|++.++++|.|||.|.|.....+.. +.. .....+++-.. ......||.+|+.++|. ||+++
T Consensus 172 iv~~l~d~lapGS~L~ish~t~d~~--p~~---~~~~~~~~~~~-~~~~~~Rs~~ei~~~f~--g~elv 232 (267)
T PF04672_consen 172 IVARLRDALAPGSYLAISHATDDGA--PER---AEALEAVYAQA-GSPGRPRSREEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHHCCS-TT-EEEEEEEB-TTS--HHH---HHHHHHHHHHC-CS----B-HHHHHHCCT--TSEE-
T ss_pred HHHHHHHhCCCCceEEEEecCCCCC--HHH---HHHHHHHHHcC-CCCceecCHHHHHHHcC--CCccC
Confidence 4788999999999999988765432 211 11233333332 23677899999999998 77764
No 50
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=94.55 E-value=0.074 Score=34.34 Aligned_cols=57 Identities=18% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCceEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGNFWVM 81 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 81 (85)
|+...+.|+|||.|.|.|.... + -+.++|.+.++..||+....-.....+-+.
T Consensus 141 i~EA~RvLK~~G~L~IAEV~SR--------------f-------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f 193 (219)
T PF05148_consen 141 IREANRVLKPGGILKIAEVKSR--------------F-------------ENVKQFIKALKKLGFKLKSKDESNKHFVLF 193 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEEGGG----------------------------S-HHHHHHHHHCTTEEEEEEE--STTEEEE
T ss_pred HHHHHheeccCcEEEEEEeccc--------------C-------------cCHHHHHHHHHHCCCeEEecccCCCeEEEE
Confidence 6788899999999999995321 1 145678888999999988765555677787
Q ss_pred EEEC
Q 042653 82 EFYK 85 (85)
Q Consensus 82 e~~~ 85 (85)
++.|
T Consensus 194 ~F~K 197 (219)
T PF05148_consen 194 EFKK 197 (219)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 51
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.38 E-value=0.0079 Score=35.96 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=35.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhh--cCCCccccCHHHHHHHHHhcC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMI--QSPGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~--~~~~g~~rt~~e~~~ll~~aG 65 (85)
+|+++++.|+|+|++++.+....+..... ......+.+-. ....+ . +.++|..+|++||
T Consensus 92 ~l~~~~~~lk~~G~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~ag 152 (152)
T PF13847_consen 92 VLKNIIRLLKPGGILIISDPNHNDELPEQ----LEELMNLYSEVWSMIYIG-N-DKEEWKYILEEAG 152 (152)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEHSHHHHHH----HHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEEECChHHHHHHH----HHHHHHHHHHHhhhhhcc-c-CHHHHHHHHHhcC
Confidence 47899999999999999998722111111 11112222211 11112 2 8899999999998
No 52
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.16 E-value=0.18 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCeeEEE
Q 042653 54 RHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~ 72 (85)
.++..++++++||+.+++.
T Consensus 137 ~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 137 LHSALAHLEKCGVSELDCV 155 (187)
T ss_pred HHHHHHHHHHCCCCcceEE
Confidence 4566778888898766543
No 53
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=94.12 E-value=0.2 Score=32.28 Aligned_cols=61 Identities=8% Similarity=0.077 Sum_probs=36.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
+|+++++.|+|||.+++.....+. -+. ....+...-.. .....-.+.++|.+++...|+..
T Consensus 122 ~l~~~~~~Lk~gG~l~~~~~~~~~---~~e---l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 122 ALRELYRVVRPGGVVAFTTLVQGS---LPE---LHQAWQAVDER-PHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCc---hHH---HHHHHHHhccC-CccccCCCHHHHHHHHHhCCcee
Confidence 378899999999999987653321 111 11111110000 11233478999999999999874
No 54
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=93.93 E-value=0.29 Score=31.59 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=34.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHH------HhhcCC---CccccCHHHHHHHHHhcCCCe
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVL------MMIQSP---GGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~------m~~~~~---~g~~rt~~e~~~ll~~aGf~~ 68 (85)
+|++++++|+|||++++. .++....+.. ..+..+. -..... .+..-+.+++.+++.++|+.+
T Consensus 112 ~l~~~~~~LkpgG~~~~~---~~~~~~~~~~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 112 LFPRLVSLLAPGGVLAVQ---MPDNLDEPSH---VLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHhcCCCcEEEEE---CCCCCCCHHH---HHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCce
Confidence 478999999999998885 2322221110 0111111 000000 123357789999999999864
No 55
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.87 E-value=0.14 Score=32.71 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCCeeEEEecC
Q 042653 54 RHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
.+++.++++++||+.+.+....
T Consensus 222 ~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 222 GEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred HHHHHHHHHhCCCCceEEEeCC
Confidence 4578889999999988877553
No 56
>PRK06922 hypothetical protein; Provisional
Probab=93.54 E-value=0.065 Score=39.80 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=21.3
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~ 25 (85)
+|++++++|+|||+++|.|.+.++.
T Consensus 519 iLreI~RVLKPGGrLII~D~v~~E~ 543 (677)
T PRK06922 519 GLQSAYEVLKPGGRIIIRDGIMTED 543 (677)
T ss_pred HHHHHHHHcCCCcEEEEEeCccCCc
Confidence 4789999999999999999876643
No 57
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.53 E-value=0.03 Score=36.95 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
|+|+.+.|||||.|+++... ..+ . + +.+-.. + ..-.-+.+..++-+++|||.+.+...
T Consensus 182 l~ni~~lLkpGG~Lil~~~l-~~t---~-Y-----~vG~~~---F-~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 182 LRNISSLLKPGGHLILAGVL-GST---Y-Y-----MVGGHK---F-PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp HHHHHTTEEEEEEEEEEEES-S-S---E-E-----EETTEE---E-E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred HHHHHHHcCCCcEEEEEEEc-Cce---e-E-----EECCEe---c-ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 78999999999999999863 221 0 0 111000 0 12236889999999999999888774
No 58
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.31 E-value=0.41 Score=31.72 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=34.8
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+++++++.|+|||.+++++.+..+....+ . +.....+.+|+.++++. |+++...
T Consensus 205 ~l~~~~~~LkpgG~~l~v~~~~~~~~~~~--------~--------p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 205 IIKNMQEHTNPGGYNLIVCAMDTEDYPCP--------M--------PFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred HHHHHHHhcCCCcEEEEEEecccccCCCC--------C--------CCCcccCHHHHHHHhCC--CEEEEEe
Confidence 47899999999999888765533221111 0 01123678888888864 8877664
No 59
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=91.87 E-value=0.95 Score=30.53 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecCCceEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAIGNFWVM 81 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 81 (85)
++.+++.|+|||.|.|.|.-. + +. +..+|.+-++..||......-....+.+.
T Consensus 247 ~kEa~RiLk~gG~l~IAEv~S---R----------f~--------------dv~~f~r~l~~lGF~~~~~d~~n~~F~lf 299 (325)
T KOG3045|consen 247 IKEANRILKPGGLLYIAEVKS---R----------FS--------------DVKGFVRALTKLGFDVKHKDVSNKYFTLF 299 (325)
T ss_pred HHHHHHHhccCceEEEEehhh---h----------cc--------------cHHHHHHHHHHcCCeeeehhhhcceEEEE
Confidence 567788899999888888421 1 12 22337788888999877666666677777
Q ss_pred EEEC
Q 042653 82 EFYK 85 (85)
Q Consensus 82 e~~~ 85 (85)
|+.|
T Consensus 300 efkK 303 (325)
T KOG3045|consen 300 EFKK 303 (325)
T ss_pred EEec
Confidence 7754
No 60
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=91.81 E-value=0.58 Score=30.35 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=39.5
Q ss_pred CHHHHHhhCCCCCE-----EEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 1 LLKNCYKSIPEDGK-----VIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 1 iL~~~~~al~pggr-----lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
+|+++++-|+|+|. |+|+ +|.+ .. .|++--+.+.|.++++.-||+.++...+.
T Consensus 126 Ml~r~~~fL~~~g~~~~~~LFlV---lP~~------------------Cv-~NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 126 MLRRAHKFLKPPGLSLFPSLFLV---LPLP------------------CV-TNSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred HHHHHHHHhCCCCccCcceEEEE---eCch------------------Hh-hcccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 47888888888887 5444 2211 11 37888899999999999999998887654
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.27 E-value=1.5 Score=28.41 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCeeEEEec-CCceEEEEE
Q 042653 55 HEFMTLATAAGFSGISCERA-IGNFWVMEF 83 (85)
Q Consensus 55 ~e~~~ll~~aGf~~~~~~~~-~~~~~~ie~ 83 (85)
+++.+++++.||+.+.+... .+...++.+
T Consensus 244 ~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~ 273 (275)
T PRK09328 244 EAVRALLAAAGFADVETRKDLAGRDRVVLG 273 (275)
T ss_pred HHHHHHHHhCCCceeEEecCCCCCceEEEE
Confidence 45888899999987776543 233334433
No 62
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.83 E-value=0.56 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=26.8
Q ss_pred ccccCHHHHHHHHHhcCCCeeEEEecC-CceEEE
Q 042653 49 GKERTRHEFMTLATAAGFSGISCERAI-GNFWVM 81 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~i 81 (85)
++-++.+++.+++++|||+.++++..+ ..+++.
T Consensus 266 S~ky~~~~~~~~l~~aGf~~~~~~~d~~~~~~~~ 299 (301)
T TIGR03438 266 SYKFSLERFAALAAAAGLRPEQVWTDPNDWFSLH 299 (301)
T ss_pred ecCCCHHHHHHHHHHCCCceeEEEECCCCCeEEE
Confidence 466999999999999999999998765 345543
No 63
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=90.74 E-value=0.77 Score=27.00 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEecCC-ceEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERAIG-NFWV 80 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~ 80 (85)
.+.-+|.+++..++++|||+..+.+..+. .+++
T Consensus 92 ~S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 92 NSYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred EeeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 56669999999999999999999987653 4444
No 64
>PRK05785 hypothetical protein; Provisional
Probab=88.32 E-value=4.9 Score=25.75 Aligned_cols=33 Identities=9% Similarity=-0.137 Sum_probs=22.9
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecC-CceEEEEEEC
Q 042653 52 RTRHEFMTLATAAGFSGISCERAI-GNFWVMEFYK 85 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~~~ 85 (85)
-+.+++.++++++| ..++..... +..++..+.|
T Consensus 191 ~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 191 PTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred CCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 47899999999984 656666654 3456665554
No 65
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.41 E-value=0.17 Score=29.37 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=27.7
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHh--cCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATA--AGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~--aGf~~~~~~~~ 74 (85)
+++++++.|+|||.+|+ |.-. -.+ +.+......- +.... ..-.-..+++...|.+ .||+..+....
T Consensus 26 ~f~~~~~~L~pGG~lil-EpQ~----w~s-Y~~~~~~~~~-~~~n~-~~i~lrP~~F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 26 FFRRIYSLLRPGGILIL-EPQP----WKS-YKKAKRLSEE-IRENY-KSIKLRPDQFEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHHHHEEEEEEEEE-E-------HHH-HHTTTTS-HH-HHHHH-HH----GGGHHHHHTSTTT---EEEEE--
T ss_pred HHHHHHHhhCCCCEEEE-eCCC----cHH-HHHHhhhhHH-HHhHH-hceEEChHHHHHHHHhcccceEEEEEccc
Confidence 36899999999986654 5311 000 0000000000 00000 1112344478898887 59998876544
No 66
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=86.67 E-value=1 Score=28.91 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=29.4
Q ss_pred HHHHhhCCCCCEEEEEeeecCCCC-CCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 3 KNCYKSIPEDGKVIVVESMIPEVP-NTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~~~~~~~-~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+++++.|+|||+++++-...+... .+|+ +. -+.+|+++++. .+|++..+.
T Consensus 139 ~~l~~ll~p~g~~lLi~l~~~~~~~~GPP-------f~------------v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 139 QQLASLLKPGGRGLLITLEYPQGEMEGPP-------FS------------VTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHHHHHHT-TTEEEEEEE
T ss_pred HHHHHHhCCCCcEEEEEEEcCCcCCCCcC-------CC------------CCHHHHHHHhc-CCcEEEEEe
Confidence 567888999999555443333221 1221 11 36688888888 888776655
No 67
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=86.66 E-value=0.63 Score=29.28 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=16.4
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+|+++++.|+|||.+++..
T Consensus 138 ~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 138 FLALYARKLKPGGEIHFAT 156 (202)
T ss_pred HHHHHHHHcCCCCEEEEEc
Confidence 3788999999999999864
No 68
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=86.64 E-value=0.54 Score=31.45 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=15.6
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
+|++++++|+|||.++|-
T Consensus 159 ~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 159 FLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred HHHHHHHhcCCCCEEEEe
Confidence 488999999999998764
No 69
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.61 E-value=0.61 Score=31.65 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecC
Q 042653 52 RTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
++.++++++++++||++.+.....
T Consensus 278 ~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 278 HAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEee
Confidence 489999999999999987765443
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=86.20 E-value=0.89 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=16.9
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+|+.+++.|+|||++++...
T Consensus 147 ~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHHHcCCCCEEEEEEe
Confidence 36889999999999999753
No 71
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=85.60 E-value=0.78 Score=28.78 Aligned_cols=19 Identities=16% Similarity=0.525 Sum_probs=16.3
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+++.+++.|+|||++++++
T Consensus 127 ~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 127 LVELCLPLLKPGGRFLALK 145 (187)
T ss_pred HHHHHHHhcCCCeEEEEEe
Confidence 3678899999999999885
No 72
>PRK07402 precorrin-6B methylase; Provisional
Probab=85.52 E-value=0.87 Score=28.29 Aligned_cols=20 Identities=15% Similarity=0.501 Sum_probs=17.0
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+|+++++.|+|||++++...
T Consensus 124 ~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 124 ILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHhcCCCeEEEEEee
Confidence 36889999999999988864
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=85.47 E-value=0.78 Score=28.62 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=16.0
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+++.+++.|+|||.+++.-
T Consensus 114 ~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 114 FLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred HHHHHHHHhCCCCEEEEEe
Confidence 3678999999999998764
No 74
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=85.40 E-value=0.69 Score=28.56 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
|+++++.|+|||++++.
T Consensus 129 l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 129 LDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHHHHHccCCCEEEEE
Confidence 67889999999999885
No 75
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=85.32 E-value=0.79 Score=30.19 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=41.7
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHH-HhhcCCC-----ccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVL-MMIQSPG-----GKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~-m~~~~~~-----g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
++++|.+-+||||.+++..... +. .+.....+... .+.+.+. ++-...+|...++..+|+...+....
T Consensus 143 ~~~~c~~lvkP~G~lf~STinr----t~--ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 143 FLRACAKLVKPGGILFLSTINR----TL--KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred HHHHHHHHcCCCcEEEEecccc----CH--HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 4789999999999888776431 11 11111222211 1111122 44577889999999999998877643
No 76
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=85.30 E-value=0.62 Score=30.67 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=16.4
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
++++++++|+|||.|++-.
T Consensus 224 ~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 224 LLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred HHHHHHHHhCCCeEEEEEC
Confidence 4788999999999999864
No 77
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=85.00 E-value=5.2 Score=26.77 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=36.1
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
|+.|++.|||||..|=+-...-.. -+.. .....+-+-|.+|..++++..||++++...
T Consensus 185 i~tI~~lLkpgG~WIN~GPLlyh~------------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 185 IETIEHLLKPGGYWINFGPLLYHF------------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHHHHhccCCEEEecCCccccC------------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 567889999999333222211110 0100 001234678999999999999999977654
No 78
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=84.62 E-value=5.3 Score=26.09 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=36.4
Q ss_pred hhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCHHHHHHHHHhcCCCeeEEEe
Q 042653 7 KSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
.++++|.+++|+|.++....+-. .+.++.-- .|+. .+....|+.+.++.|+.+..+..
T Consensus 171 ~~l~~G~rVLIVDDvi~TG~Tl~------~~~~ll~~---~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~sl~~ 236 (238)
T PRK08558 171 SALKKGDRVLIVDDIIRSGETQR------ALLDLARQ---AGADVVGVFFLIAVGEVGIDRAREETDAPVDALYT 236 (238)
T ss_pred HHcCCcCEEEEEecccccCHHHH------HHHHHHHH---cCCEEEEEEEEEecCchHHHHHhHhcCCCEEEEEE
Confidence 46889999999999988653311 22332211 1221 14455699999889988766654
No 79
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=83.75 E-value=0.83 Score=30.68 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=14.9
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
++++++++|+|||.|++=
T Consensus 244 vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred HHHHHHHHhCCCcEEEEe
Confidence 478999999999976654
No 80
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.60 E-value=2.2 Score=26.46 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=21.8
Q ss_pred ccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 49 GKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.+..|.+++.++++++||++++....
T Consensus 143 ~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 143 IHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred cccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 34679999999999999999887644
No 81
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=83.01 E-value=1.5 Score=27.64 Aligned_cols=26 Identities=4% Similarity=-0.092 Sum_probs=21.8
Q ss_pred cccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 50 KERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
..++.+++.++++++||+++......
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeeccc
Confidence 34699999999999999998876543
No 82
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=82.92 E-value=4.9 Score=25.06 Aligned_cols=20 Identities=10% Similarity=0.376 Sum_probs=15.3
Q ss_pred HhhCCCCCEEEEEeeecCCC
Q 042653 6 YKSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~ 25 (85)
.+++++|.|++|+|.++...
T Consensus 110 ~~~l~~G~rVlIVDDllaTG 129 (179)
T COG0503 110 KDALKPGDRVLIVDDLLATG 129 (179)
T ss_pred hhhCCCCCEEEEEecchhcC
Confidence 45788899999998777643
No 83
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=82.89 E-value=2.6 Score=28.29 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=41.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHH-hhcC----CCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLM-MIQS----PGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m-~~~~----~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+..+.+.|+|||+|+|......- .+.+ ....++-+. ...- ...+--+.+|...++.++|++..++.
T Consensus 178 l~~l~~~lkP~G~lfittinrt~---lS~~--~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~v~ 248 (282)
T KOG1270|consen 178 LNCLSALLKPNGRLFITTINRTI---LSFA--GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVNDVV 248 (282)
T ss_pred HHHHHHHhCCCCceEeeehhhhH---HHhh--ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhhhh
Confidence 67788999999999998753221 1111 012223222 2221 12344788999999999999887765
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=82.67 E-value=1.1 Score=28.46 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=17.1
Q ss_pred CHHHHHhhCCCCCEEEEEeee
Q 042653 1 LLKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~ 21 (85)
||+.|.+.|+|||||++.-..
T Consensus 117 ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 117 ILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred HHHHHHHHcCcCCeEEEEeec
Confidence 578899999999998876543
No 85
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=82.47 E-value=2.7 Score=28.69 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEecCC-ceEE
Q 042653 51 ERTRHEFMTLATAAGFSGISCERAIG-NFWV 80 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~~ 80 (85)
-+|.+++++++++|||++.+.+..+. .+++
T Consensus 287 Kyt~~~~~~l~~~aG~~~~~~W~d~~~~f~~ 317 (319)
T TIGR03439 287 KYDKDEREKLCQSAGLKVVDVWTNEDGDYGI 317 (319)
T ss_pred CCCHHHHHHHHHHCCCeeeEEEECCCCceee
Confidence 38999999999999999999997653 4443
No 86
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=82.35 E-value=2.4 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.2
Q ss_pred cccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 50 KERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
...+.++|.++++++||++..+.+..
T Consensus 191 ~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 191 YPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred cccCHHHHHHHHHHCCCceEeeeecc
Confidence 45688999999999999998887654
No 87
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=81.97 E-value=1.4 Score=27.43 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=14.6
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
++.+++.|+|||++++.
T Consensus 125 ~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 125 LELTLNLLKVGGYFLAY 141 (181)
T ss_pred HHHHHHhcCCCCEEEEE
Confidence 56788999999999876
No 88
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=81.83 E-value=1.4 Score=29.92 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
|..+.+.|+|||||+|+-...-+
T Consensus 223 L~~~~~~L~~gGrl~VISfHSLE 245 (305)
T TIGR00006 223 LQFAPNLLAPGGRLSIISFHSLE 245 (305)
T ss_pred HHHHHHHhcCCCEEEEEecCcHH
Confidence 67788999999999999875433
No 89
>PLN03075 nicotianamine synthase; Provisional
Probab=81.36 E-value=1.2 Score=30.11 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=15.9
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+|+++++.|+|||.+++--
T Consensus 215 vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 215 VIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHhcCCCcEEEEec
Confidence 4789999999999887653
No 90
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=81.29 E-value=2.8 Score=26.78 Aligned_cols=50 Identities=6% Similarity=-0.028 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCC-CChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPN-TSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~-~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
++++.++|+|||+++++-...+.... ++ -...|.+|.+++|+. +|.+..+
T Consensus 135 ~~~l~~lLkpgG~~ll~~~~~~~~~~~gp-------------------p~~~~~~eL~~~f~~-~~~i~~~ 185 (213)
T TIGR03840 135 AAHLLALLPPGARQLLITLDYDQSEMAGP-------------------PFSVSPAEVEALYGG-HYEIELL 185 (213)
T ss_pred HHHHHHHcCCCCeEEEEEEEcCCCCCCCc-------------------CCCCCHHHHHHHhcC-CceEEEE
Confidence 57899999999998877655432211 11 012678888888863 4554443
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=81.27 E-value=1.6 Score=28.58 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.7
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
+++++++|+|||+++++.
T Consensus 164 ~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 164 AEELARVVKPGGIVITVT 181 (272)
T ss_pred HHHHHhhccCCCEEEEEe
Confidence 578899999999999865
No 92
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=80.58 E-value=1.7 Score=29.42 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
|.++.+.|+|||+|+|+-...-+
T Consensus 219 L~~~~~~L~~gGrl~visfHSlE 241 (296)
T PRK00050 219 LEAALDLLKPGGRLAVISFHSLE 241 (296)
T ss_pred HHHHHHHhcCCCEEEEEecCcHH
Confidence 67888999999999999875443
No 93
>PRK14967 putative methyltransferase; Provisional
Probab=80.57 E-value=1.7 Score=27.61 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=16.1
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
++++.+.|+|||+++++..-
T Consensus 142 l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 142 CDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred HHHHHHhcCCCcEEEEEEec
Confidence 56778899999999987543
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=80.56 E-value=1.5 Score=27.39 Aligned_cols=17 Identities=12% Similarity=0.634 Sum_probs=14.4
Q ss_pred CHHHHHhhCCCCCEEEE
Q 042653 1 LLKNCYKSIPEDGKVIV 17 (85)
Q Consensus 1 iL~~~~~al~pggrlli 17 (85)
+|+.+.+.|+|||++++
T Consensus 127 ~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 127 IISASWEIIKKGGRIVI 143 (198)
T ss_pred HHHHHHHHcCCCcEEEE
Confidence 36788899999999975
No 95
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.37 E-value=1.9 Score=26.95 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=15.3
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
|+.|++-|+|||+|-|.
T Consensus 69 lkechr~Lrp~G~LriA 85 (185)
T COG4627 69 LKECHRFLRPGGKLRIA 85 (185)
T ss_pred HHHHHHHhCcCcEEEEE
Confidence 68899999999998876
No 96
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=80.14 E-value=1.6 Score=30.62 Aligned_cols=24 Identities=8% Similarity=0.266 Sum_probs=20.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~ 24 (85)
||+++++.|+|||+|+...+.+..
T Consensus 350 lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCh
Confidence 578899999999999999887653
No 97
>PRK04457 spermidine synthase; Provisional
Probab=79.32 E-value=1.6 Score=28.75 Aligned_cols=18 Identities=22% Similarity=0.654 Sum_probs=15.4
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
++++|++.|+|||.+++.
T Consensus 159 fl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 159 FFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHHHHhcCCCcEEEEE
Confidence 368899999999998884
No 98
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=79.19 E-value=2 Score=29.30 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
|..+.+.|+|||||.|+-...-+
T Consensus 227 L~~a~~~L~~gGRl~VIsFHSLE 249 (314)
T COG0275 227 LEAALDLLKPGGRLAVISFHSLE 249 (314)
T ss_pred HHHHHHhhCCCcEEEEEEecchH
Confidence 56778899999999999875443
No 99
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=78.32 E-value=2 Score=30.27 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=19.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||+++.+.|+|||+|+...+.+.
T Consensus 366 iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 366 LLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCC
Confidence 57889999999999998886654
No 100
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=78.01 E-value=2 Score=29.49 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=16.8
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+++++.+.|+|||+++|+-.
T Consensus 285 ~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 285 LIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred HHHHHHHhcCcCCEEEEEEe
Confidence 46788999999999998754
No 101
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=77.18 E-value=6.2 Score=25.98 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=35.2
Q ss_pred CHHHHHhhCCC-CCEEEEEeeecCCC------CCCChhhhhHHHHHHHHhhcCCCccccCH--HHHHHHHHhcCCCeeEE
Q 042653 1 LLKNCYKSIPE-DGKVIVVESMIPEV------PNTSIESKLNSHYDVLMMIQSPGGKERTR--HEFMTLATAAGFSGISC 71 (85)
Q Consensus 1 iL~~~~~al~p-ggrlli~e~~~~~~------~~~~~~~~~~~~~dl~m~~~~~~g~~rt~--~e~~~ll~~aGf~~~~~ 71 (85)
+|+.++.++.| +||+|+.=. +|-. ..+.. . --| ..+- -+|+.+.+ ..+-++|+.|||.+..-
T Consensus 188 LL~Di~~vl~psngrvivaLV-LP~~hYVE~N~~g~~-~----rPd-n~Le--~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 188 LLEDIHLVLAPSNGRVIVALV-LPYMHYVETNTSGLP-L----RPD-NLLE--NNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred HHHHHHHHhccCCCcEEEEEE-ecccceeecCCCCCc-C----Cch-HHHH--hcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 47788889988 898887643 2211 11100 0 111 1111 25643222 23568899999987665
Q ss_pred Eec
Q 042653 72 ERA 74 (85)
Q Consensus 72 ~~~ 74 (85)
.+.
T Consensus 259 Trl 261 (288)
T KOG3987|consen 259 TRL 261 (288)
T ss_pred hcC
Confidence 444
No 102
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=76.87 E-value=4.3 Score=26.04 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=31.2
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCC-CCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVP-NTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~-~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
++++.++|+|||+++++-...++.. .+++ ...|.+|+++++.. +|.+..+.
T Consensus 138 ~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 138 VQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred HHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHHHHhcC-CceEEEee
Confidence 5788999999998666544433221 1110 12688888888853 26655444
No 103
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=76.62 E-value=9.9 Score=23.96 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=37.6
Q ss_pred hhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 7 KSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
.+++||-|++|+|.++-...+-. ....+.- ..|+. +++...|++.+.+.|+....+...+
T Consensus 112 ~~i~~G~rVlIVDDviaTGgT~~------a~~~lv~---~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 112 KFLSEGDRVLIIDDFLANGQAAL------GLIDIIE---QAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred hhCCCCCEEEEEeehhhcChHHH------HHHHHHH---HCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEee
Confidence 46789999999999987653211 1222211 01221 2555678888999998887776543
No 104
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=76.45 E-value=0.91 Score=27.70 Aligned_cols=19 Identities=11% Similarity=0.398 Sum_probs=15.5
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+++.+++.|+|||+++++-
T Consensus 122 ~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 122 FIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhccCCCEEEEEe
Confidence 4678899999999997654
No 105
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=75.99 E-value=0.85 Score=28.89 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.5
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
++++++++|+|||-|++=.
T Consensus 157 vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 157 VLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHHcCCCCEEEEec
Confidence 5789999999999888753
No 106
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=74.94 E-value=3 Score=27.73 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=16.6
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+++++++.|+|||.+++...
T Consensus 241 ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 241 LYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred HHHHHHHHcCCCcEEEEEeC
Confidence 36788999999999988764
No 107
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=74.84 E-value=2.9 Score=26.46 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
.+.+.+.|+|||++++.
T Consensus 159 ~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 159 PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred hHHHHHhhCCCcEEEEE
Confidence 35677889999998885
No 108
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=74.56 E-value=2.8 Score=29.31 Aligned_cols=19 Identities=11% Similarity=0.443 Sum_probs=16.3
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+++++++.|+|||+++++-
T Consensus 322 l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 322 MFHHARRCLKINGELYIVA 340 (378)
T ss_pred HHHHHHHhcccCCEEEEEE
Confidence 4678899999999999984
No 109
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.14 E-value=1.3 Score=30.12 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
|.++.+.|+|||||+|+-..
T Consensus 224 L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 224 LEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEEec
Confidence 67888899999999999864
No 110
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=73.28 E-value=3.2 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||+++.+.|+|||+++...+.+.
T Consensus 359 iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCC
Confidence 57889999999999999887654
No 111
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=73.13 E-value=2.4 Score=29.61 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=18.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||+|..++|++||+|+=--..+.
T Consensus 278 iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 278 ILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred HHHHHHHHhcCCCEEEEeccCCC
Confidence 68999999999999887665554
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=72.90 E-value=3.4 Score=29.02 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.1
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
+|+++.+.|+|||+++...+.+.
T Consensus 354 iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCC
Confidence 47888999999999998886554
No 113
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=72.48 E-value=2.4 Score=20.59 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=15.6
Q ss_pred ccCHHHHHHHHHhcCCCeeE
Q 042653 51 ERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~ 70 (85)
.--..||.++|..+|.+..+
T Consensus 25 ~glP~eW~~ll~~sgis~~e 44 (46)
T cd01093 25 TGLPEEWQRLLKSSGITKEE 44 (46)
T ss_pred cCCCHHHHHHHHHcCCCHHH
Confidence 34458999999999987643
No 114
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=72.40 E-value=4.2 Score=20.01 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCeeEE
Q 042653 55 HEFMTLATAAGFSGISC 71 (85)
Q Consensus 55 ~e~~~ll~~aGf~~~~~ 71 (85)
+|...+|+++||+..+.
T Consensus 2 ~el~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 2 RELIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred hHHHHHHHHCCCEEecC
Confidence 68899999999998754
No 115
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=71.60 E-value=3.6 Score=25.96 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
.+.+.+.|+|||++++.
T Consensus 160 ~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 160 PEALIDQLKEGGILVMP 176 (215)
T ss_pred cHHHHHhcCcCcEEEEE
Confidence 45678899999998874
No 116
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=71.54 E-value=4.3 Score=26.63 Aligned_cols=23 Identities=9% Similarity=0.375 Sum_probs=17.9
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||+++.+.++|||+|+..-..+.
T Consensus 181 iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCC
Confidence 57888999999999876655443
No 117
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=71.48 E-value=3.3 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.5
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
|+++.+++|+|||.|+|=
T Consensus 223 il~~f~~~L~~gG~LflG 240 (268)
T COG1352 223 ILRRFADSLKPGGLLFLG 240 (268)
T ss_pred HHHHHHHHhCCCCEEEEc
Confidence 578899999999988774
No 118
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=71.03 E-value=3.8 Score=27.73 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=15.6
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+|+.+++.|+|||+++++-
T Consensus 276 ~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 276 SLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHHccCCcEEEEEE
Confidence 4678889999999988763
No 119
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=70.73 E-value=4.6 Score=26.87 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.0
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
|.++.++|+|||.+.++-..+
T Consensus 178 le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 178 LEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred HHHHHHHhCCCcEEEEEcCCH
Confidence 689999999999999886544
No 120
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=70.65 E-value=18 Score=22.79 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=36.8
Q ss_pred hhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCHHHHHHHHHhcCCCeeEEEec
Q 042653 7 KSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.++++|.|++|+|.++-...+-. ....+.-- .++. +|+...+++.+++.|+....+...
T Consensus 112 ~~l~~G~rVLIVDDvvtTGgT~~------a~~~ll~~---aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~ 178 (191)
T TIGR01744 112 EFLSDQDRVLIIDDFLANGQAAH------GLVDIAKQ---AGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARI 178 (191)
T ss_pred HhCCCcCEEEEEEehhccChHHH------HHHHHHHH---CCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEE
Confidence 46789999999999987653211 12222211 1222 266566888888889887666544
No 121
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=70.44 E-value=1.5 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.5
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
-..+-+.+++++.||+++...
T Consensus 246 V~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 246 VPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp --HHHHHHHHHHTTEEEEEEE
T ss_pred eeHHHHHHHHHHcCCEEEEeC
Confidence 567899999999999988654
No 122
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=69.79 E-value=3.8 Score=27.63 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.2
Q ss_pred CHHHHHhhCCCCCEEEE
Q 042653 1 LLKNCYKSIPEDGKVIV 17 (85)
Q Consensus 1 iL~~~~~al~pggrlli 17 (85)
|++++.+.|+|||++++
T Consensus 245 i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 245 ILAEAPDYLTEDGVLVV 261 (307)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 46788899999998775
No 123
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=69.32 E-value=4.6 Score=25.38 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=13.2
Q ss_pred HHHHhhCCCCCEEEEE
Q 042653 3 KNCYKSIPEDGKVIVV 18 (85)
Q Consensus 3 ~~~~~al~pggrlli~ 18 (85)
+++.+.|+|||++++.
T Consensus 157 ~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 157 SALVRQLKDGGVLVIP 172 (205)
T ss_pred HHHHHhcCcCcEEEEE
Confidence 5678889999998774
No 124
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=69.04 E-value=4.2 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecCCc---eEEEEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCERAIGN---FWVMEFY 84 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~~~---~~~ie~~ 84 (85)
.++++..+.++++||++.+...+..+ -.++|++
T Consensus 61 ~~e~~l~~~l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 61 HREEDLRRALAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred eCHHHHHHHHHhCCCeeeecccccCcChHHHHhhcc
Confidence 67899999999999999988776532 2466654
No 125
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=68.82 E-value=4.4 Score=28.58 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=17.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~ 22 (85)
+|+++.+.|+|||+++..-..+
T Consensus 361 iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 361 ILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred HHHHHHHHcCCCCEEEEEcCCC
Confidence 4788899999999998665444
No 126
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=68.67 E-value=11 Score=24.57 Aligned_cols=22 Identities=5% Similarity=0.051 Sum_probs=17.4
Q ss_pred HHHHHhhCCCCCEEEEEeeecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~ 23 (85)
.+++.+.|+|||+++++-.-.+
T Consensus 146 ~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 146 AKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred HHHHHHHhCCCcEEEEEEEecC
Confidence 3578889999999999876444
No 127
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=68.60 E-value=5.4 Score=25.00 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=14.4
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
.+++.+.|+|||++++.-
T Consensus 158 ~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 158 PRALLEQLKEGGILVAPV 175 (212)
T ss_pred hHHHHHhcCCCcEEEEEE
Confidence 456788999999988754
No 128
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=68.53 E-value=3.7 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.482 Sum_probs=15.2
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
||.++.+.|+|||+|+=.-
T Consensus 224 iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 224 LIESAFHALKPGGTLVYST 242 (470)
T ss_pred HHHHHHHHcCCCcEEEEEC
Confidence 6889999999999874433
No 129
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=68.52 E-value=4.3 Score=20.73 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=9.6
Q ss_pred HHHHhcCCCeeE
Q 042653 59 TLATAAGFSGIS 70 (85)
Q Consensus 59 ~ll~~aGf~~~~ 70 (85)
+||++|||..-+
T Consensus 31 ~WL~~aGF~~G~ 42 (57)
T PF08845_consen 31 KWLEEAGFTIGD 42 (57)
T ss_pred hhhHHhCCCCCC
Confidence 689999997643
No 130
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=68.11 E-value=4.3 Score=26.99 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCEEEE
Q 042653 1 LLKNCYKSIPEDGKVIV 17 (85)
Q Consensus 1 iL~~~~~al~pggrlli 17 (85)
+++++.+.|+|||++++
T Consensus 233 il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 233 ILAEAADHLNENGVLVV 249 (284)
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 46778889999998763
No 131
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=67.87 E-value=4.7 Score=26.50 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
++++++.|+|||.+++.
T Consensus 169 ~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 169 YELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHHHhCCCcEEEEc
Confidence 57899999999998876
No 132
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=67.39 E-value=5 Score=28.38 Aligned_cols=23 Identities=9% Similarity=0.353 Sum_probs=18.2
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||+++.+.|+|||.|+..-+.+.
T Consensus 348 iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 348 IVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHhcCCCCEEEEEECCCC
Confidence 57899999999999776665543
No 133
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=66.74 E-value=18 Score=24.76 Aligned_cols=66 Identities=14% Similarity=0.026 Sum_probs=33.1
Q ss_pred HhhCCCCCEEEEEeeecCCCCCCCh--hhhhHHHHHHHH-hhcC------------CCccccCHHHHHHHHHhcC-CCee
Q 042653 6 YKSIPEDGKVIVVESMIPEVPNTSI--ESKLNSHYDVLM-MIQS------------PGGKERTRHEFMTLATAAG-FSGI 69 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~~~~~~--~~~~~~~~dl~m-~~~~------------~~g~~rt~~e~~~ll~~aG-f~~~ 69 (85)
++=|.|||++++.=...++...... ..-+..+-+..+ |+.- .---.+|.+|+++++++.| |++.
T Consensus 170 a~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 170 AEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp HHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred hheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 4558999999999876665211110 000111111111 2210 0112299999999999887 7665
Q ss_pred EE
Q 042653 70 SC 71 (85)
Q Consensus 70 ~~ 71 (85)
++
T Consensus 250 ~l 251 (334)
T PF03492_consen 250 KL 251 (334)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 134
>PRK11524 putative methyltransferase; Provisional
Probab=66.48 E-value=5.3 Score=26.47 Aligned_cols=17 Identities=12% Similarity=0.624 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
|+.+++.|+|||.++|.
T Consensus 63 l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 63 IDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHhCCCcEEEEE
Confidence 67889999999999885
No 135
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=65.94 E-value=2.1 Score=24.33 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
++.+.+.++|+|+++++-...
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHhccCCEEEEEEccC
Confidence 566778899999999998654
No 136
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=65.91 E-value=15 Score=21.79 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCccccCHHHHHHHHHhcC----CCeeEEEec
Q 042653 37 HYDVLMMIQSPGGKERTRHEFMTLATAAG----FSGISCERA 74 (85)
Q Consensus 37 ~~dl~m~~~~~~g~~rt~~e~~~ll~~aG----f~~~~~~~~ 74 (85)
+-|+.--+. -+|+-++.++|.++|.++= ....++.+.
T Consensus 47 l~dIs~qv~-~~G~k~~~e~WK~~~~~~~~~~~~~~~~~~~g 87 (127)
T PF05772_consen 47 LGDISRQVE-WNGRKLDPEDWKELFTAAFLIATGEEQRVVPG 87 (127)
T ss_dssp HHHHHHH---BTTB---HHHHHHHHHHHH-----S--EEEE-
T ss_pred HHHHHHHhH-hcCccCCHHHHHHHHHHHHhhhccchhhhccC
Confidence 334444333 3899999999999998652 244455554
No 137
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=65.72 E-value=25 Score=23.58 Aligned_cols=58 Identities=12% Similarity=0.140 Sum_probs=36.1
Q ss_pred HHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 3 KNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
--+...|+|||-+...-...++.. + +++.. +..-.+++...+++++..||+++++.++
T Consensus 209 ~~aa~~L~~gGlfaFSvE~l~~~~------------~-f~l~p-s~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 209 AGAAGLLAPGGLFAFSVETLPDDG------------G-FVLGP-SQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHHhcCCCceEEEEecccCCCC------------C-eecch-hhhhccchHHHHHHHHhcCceEEEeecc
Confidence 345678999997665433333321 1 11110 1222467888899999999999988765
No 138
>PRK00811 spermidine synthase; Provisional
Probab=64.88 E-value=5.8 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=14.4
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
+++|++.|+|||.+++.
T Consensus 174 ~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 174 YENCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 57899999999987764
No 139
>PF13137 DUF3983: Protein of unknown function (DUF3983)
Probab=63.16 E-value=4.6 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.0
Q ss_pred cccCHHHHHHHHHhcCC
Q 042653 50 KERTRHEFMTLATAAGF 66 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf 66 (85)
++|....|+++|-+||.
T Consensus 18 K~rv~kAWRNiFvqagI 34 (34)
T PF13137_consen 18 KYRVDKAWRNIFVQAGI 34 (34)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 35778899999999983
No 140
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=62.97 E-value=6.2 Score=26.47 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=33.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhc--CCCee
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAA--GFSGI 69 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~a--Gf~~~ 69 (85)
+++++++.|.|||.|| +|. .+. .+ +.+......- +..+.---....+.++.++.++ ||+-+
T Consensus 191 ff~kis~ll~pgGiLv-vEP---QpW-ks-Y~kaar~~e~--~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 191 FFRKISSLLHPGGILV-VEP---QPW-KS-YKKAARRSEK--LAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred HHHHHHHhhCcCcEEE-EcC---Cch-HH-HHHHHHHHHH--hhcCccceecCHHHHHhhhhhhhhheeee
Confidence 3689999999999654 442 121 12 1111112211 1112223347888999999988 56543
No 141
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.89 E-value=12 Score=20.70 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.9
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
||+++...+|++++++.|++....
T Consensus 6 GG~~~~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 6 GGREDRERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cCCcccHHHHHHHHHHcCCEEEEE
Confidence 888999999999999999997766
No 142
>PRK09213 pur operon repressor; Provisional
Probab=62.48 E-value=7.7 Score=25.97 Aligned_cols=20 Identities=20% Similarity=0.474 Sum_probs=16.6
Q ss_pred hhCCCCCEEEEEeeecCCCC
Q 042653 7 KSIPEDGKVIVVESMIPEVP 26 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~~ 26 (85)
+++++|.|++|+|.++-...
T Consensus 191 ~~l~~G~rVLIVDDv~~TGg 210 (271)
T PRK09213 191 RSLKEGSRVLIVDDFMKAGG 210 (271)
T ss_pred hhcCCcCEEEEEeeecccCH
Confidence 57899999999999887553
No 143
>PF13592 HTH_33: Winged helix-turn helix
Probab=61.22 E-value=9.4 Score=19.28 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=21.0
Q ss_pred ccccCHHHHHHHHHhcCCCeeEEEe
Q 042653 49 GKERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
|..+|.+....+|.+.||+-.+-.+
T Consensus 19 gv~ys~~~v~~lL~r~G~s~~kp~~ 43 (60)
T PF13592_consen 19 GVKYSPSGVYRLLKRLGFSYQKPRP 43 (60)
T ss_pred CCEEcHHHHHHHHHHcCCccccCCC
Confidence 6778999999999999999765443
No 144
>PRK06202 hypothetical protein; Provisional
Probab=60.83 E-value=7.4 Score=24.73 Aligned_cols=23 Identities=22% Similarity=0.073 Sum_probs=19.7
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEec
Q 042653 51 ERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
-+|.+|+.+++++ ||++...++.
T Consensus 201 ~~~~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 201 SYTPAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred hcCHHHHHHHhhC-CCeEEeccce
Confidence 4799999999999 9998877654
No 145
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=60.81 E-value=7.8 Score=24.30 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.2
Q ss_pred HhhCCCCCEEEEEeeecCCCC
Q 042653 6 YKSIPEDGKVIVVESMIPEVP 26 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~~ 26 (85)
..|++||.|++|+|.++...+
T Consensus 116 ~~Ai~~g~rvvvVDDllATGG 136 (183)
T KOG1712|consen 116 KGAIKPGQRVVVVDDLLATGG 136 (183)
T ss_pred ccccCCCCeEEEEechhhcCc
Confidence 468899999999998887654
No 146
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=59.95 E-value=23 Score=21.35 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHhhcCCCccccCHHHHHHHHH
Q 042653 36 SHYDVLMMIQSPGGKERTRHEFMTLAT 62 (85)
Q Consensus 36 ~~~dl~m~~~~~~g~~rt~~e~~~ll~ 62 (85)
..|-..||...+.|.+-..++|+.-+.
T Consensus 57 lYF~aqmmlinp~gaeq~~~~F~~~l~ 83 (148)
T COG5443 57 LYFIAQMMLINPAGAEQATEMFRKSLN 83 (148)
T ss_pred HHHHHHHHhcCHhhHHHHHHHHHHHHH
Confidence 455556665567888888788776654
No 147
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=59.80 E-value=8.9 Score=25.03 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
|++++.+.|+|||++++.
T Consensus 198 i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 198 VAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 356677889999987754
No 148
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=59.77 E-value=12 Score=24.61 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.6
Q ss_pred cCHHHHHHHHHhcCCCee
Q 042653 52 RTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~ 69 (85)
-+++.|..+|+++||+..
T Consensus 216 ddedswk~il~~~G~~v~ 233 (265)
T COG4822 216 DDEDSWKNILEKNGFKVE 233 (265)
T ss_pred cchHHHHHHHHhCCceeE
Confidence 467899999999999973
No 149
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=59.49 E-value=15 Score=18.88 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.4
Q ss_pred ccccCHHHHHHHHHhcCCCee
Q 042653 49 GKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~ 69 (85)
|...+.++..++|++.||+..
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~ 36 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVE 36 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEE
Confidence 557899999999999999874
No 150
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=59.29 E-value=14 Score=23.23 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=17.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
+.+++..|||||+|++.=.+-.+
T Consensus 94 m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 94 MAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred HHHHHHhhccCCeEEEEeecCCc
Confidence 46788899999999987665543
No 151
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=58.95 E-value=3.5 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.880 Sum_probs=14.6
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
++.+++.|+|||.++|.
T Consensus 39 ~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 39 LKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHhhcCCCeeEEEE
Confidence 67899999999988775
No 152
>PF02479 Herpes_IE68: Herpesvirus immediate early protein; InterPro: IPR003403 This regulatory protein is expressed from an immediate early gene in the cell cycle of Herpesviridae. The protein is known by various names including IE-68, US1, ICP22 and IR4.
Probab=58.86 E-value=18 Score=21.73 Aligned_cols=29 Identities=14% Similarity=0.001 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcCCCccccCHHHHHHHHHhcC
Q 042653 35 NSHYDVLMMIQSPGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 35 ~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aG 65 (85)
..++|++||-. -+.--+.+.|+.||+-.|
T Consensus 62 R~l~D~YlmGy--~~~Rl~~~~We~lLQlsp 90 (132)
T PF02479_consen 62 RLLLDFYLMGY--TRQRLTPACWERLLQLSP 90 (132)
T ss_pred HHHHHHHHHhh--ccCCCCHHHHHHHHhhCc
Confidence 47899999874 356678899999998665
No 153
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=58.86 E-value=8.4 Score=26.92 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.5
Q ss_pred CHHHHHhhCCCCCEEE
Q 042653 1 LLKNCYKSIPEDGKVI 16 (85)
Q Consensus 1 iL~~~~~al~pggrll 16 (85)
.|+|+.+.|+|||-.|
T Consensus 219 ~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 219 ALRNVAKCLKPGGVFI 234 (389)
T ss_pred HHHHHHhhcCCCcEEE
Confidence 3899999999999654
No 154
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=58.85 E-value=16 Score=21.75 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=18.2
Q ss_pred CCcc-ccCHHHHHHHHHhcCCCeeEEE
Q 042653 47 PGGK-ERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 47 ~~g~-~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.+|+ --.-.+++++|+++||+.++.+
T Consensus 13 VGG~nki~MaeLr~~l~~~Gf~~V~Ty 39 (137)
T PF08002_consen 13 VGGKNKIKMAELREALEDLGFTNVRTY 39 (137)
T ss_dssp BTTBS---HHHHHHHHHHCT-EEEEEE
T ss_pred cCCCCcccHHHHHHHHHHcCCCCceEE
Confidence 3553 4788999999999999988765
No 155
>PRK01581 speE spermidine synthase; Validated
Probab=58.02 E-value=11 Score=26.56 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
+++|++.|+|||.+++.
T Consensus 251 y~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 251 FARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 57899999999998776
No 156
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=57.89 E-value=5.2 Score=25.70 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=16.3
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
++++.++|.|||.||+...
T Consensus 129 l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 129 LDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp HHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHHHhCCCCEEEEEEe
Confidence 5778899999999999775
No 157
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=57.74 E-value=7.7 Score=26.77 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=18.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeecC
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~ 23 (85)
||.+..+.++|||+|+-.-+.+.
T Consensus 270 iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 270 ILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred HHHHHHHhcCCCCEEEEEccCCc
Confidence 68889999999998887776554
No 158
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=57.31 E-value=9.5 Score=26.19 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=17.3
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
|.++-+.++||+-|+|+|.
T Consensus 225 Ll~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 225 LLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred HHHHHhhcCCCcEEEEEcC
Confidence 6788899999999999996
No 159
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=56.98 E-value=32 Score=20.18 Aligned_cols=31 Identities=10% Similarity=-0.112 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCeeEEEecCCceEEEEEE
Q 042653 54 RHEFMTLATAAGFSGISCERAIGNFWVMEFY 84 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~~~~~~~~~ie~~ 84 (85)
....+.-|.++||.+.+....+.-...+.+.
T Consensus 92 a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~ 122 (124)
T PF05430_consen 92 AGAVRRALQQAGFEVEKVPGFGRKREMLRAV 122 (124)
T ss_dssp BHHHHHHHHHCTEEEEEEE-STTSSEEEEEE
T ss_pred hHHHHHHHHHcCCEEEEcCCCCCcchheEEE
Confidence 4567899999999987776655555555544
No 160
>PLN02366 spermidine synthase
Probab=56.61 E-value=9.2 Score=25.94 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
+++|++.|+|||.+++.
T Consensus 189 ~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 189 FESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHHhcCCCcEEEEC
Confidence 67899999999987654
No 161
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=55.93 E-value=29 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
+.+.-++|++||+++++-...
T Consensus 242 ~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 242 LEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred HHHHHHHHhcCCEEEEECCCC
Confidence 345678899999999998763
No 162
>PRK13699 putative methylase; Provisional
Probab=55.10 E-value=14 Score=23.86 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=13.4
Q ss_pred HHHHHhhCCCCCEEEE
Q 042653 2 LKNCYKSIPEDGKVIV 17 (85)
Q Consensus 2 L~~~~~al~pggrlli 17 (85)
++.++++|+|||.+++
T Consensus 55 l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 55 CNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHcCCCCEEEE
Confidence 5788999999987765
No 163
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=54.47 E-value=11 Score=25.79 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=16.4
Q ss_pred CHHHHHh-hCCCCCEEEEE-eee
Q 042653 1 LLKNCYK-SIPEDGKVIVV-ESM 21 (85)
Q Consensus 1 iL~~~~~-al~pggrlli~-e~~ 21 (85)
+|+++++ +|+||+.+||- |.+
T Consensus 178 fL~~~~~~~l~~~d~lLiG~D~~ 200 (319)
T TIGR03439 178 FLAGFLATALSPSDSFLIGLDGC 200 (319)
T ss_pred HHHHHHHhhCCCCCEEEEecCCC
Confidence 4789999 99999988773 544
No 164
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=54.43 E-value=13 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=18.2
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
-.++|++.+++++||++++-.
T Consensus 241 vnE~evE~~~q~~G~~IVrPE 261 (368)
T COG4421 241 VNEEEVERLLQRSGLTIVRPE 261 (368)
T ss_pred hCHHHHHHHHHhcCcEEEech
Confidence 478999999999999988654
No 165
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=54.13 E-value=7 Score=24.80 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=16.4
Q ss_pred CHHHHHhhCCCCCEEEEEeee
Q 042653 1 LLKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~ 21 (85)
|++++.++++|||..++...+
T Consensus 115 i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 115 IIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp HHHHHHHTEEEEEEEEEEEEB
T ss_pred HHHHHHhhcCCcEEEEEEEec
Confidence 467788889999988886654
No 166
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=53.91 E-value=50 Score=21.76 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.9
Q ss_pred cCHHHHHHHHHhcCCCeeEE
Q 042653 52 RTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~ 71 (85)
.+.++..++|++.||+....
T Consensus 229 ~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 229 IDRADVAEWLAERGWRASEH 248 (260)
T ss_pred CChhhHHHHHHHCCCeeecC
Confidence 46789999999999998654
No 167
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=53.55 E-value=18 Score=17.36 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.7
Q ss_pred cCHHHHHHHHHhcCCCee
Q 042653 52 RTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~ 69 (85)
.+.+++.++.++.||...
T Consensus 27 ~~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 27 QNPEEVVALAREAGYDFT 44 (49)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 599999999999999753
No 168
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=53.53 E-value=5.9 Score=23.97 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=14.7
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
|+++.+.|+|||.+.|+=..
T Consensus 75 l~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 75 LEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHhhccCCEEEEEEeC
Confidence 46677888999999887653
No 169
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=53.30 E-value=13 Score=22.77 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=15.0
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+|.++...|++|+.|+|+-.
T Consensus 87 lL~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 87 LLANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp HHHHHHTTS-TT-EEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEec
Confidence 37788899999999999864
No 170
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=53.10 E-value=80 Score=22.39 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.6
Q ss_pred cCHHHHHHHHHhcC-CCeeEEE
Q 042653 52 RTRHEFMTLATAAG-FSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aG-f~~~~~~ 72 (85)
+|.+|+++++++.| |++.++.
T Consensus 287 ps~eEv~~~Ie~~gsF~I~~le 308 (386)
T PLN02668 287 PSLQDFKEVVEANGSFAIDKLE 308 (386)
T ss_pred CCHHHHHHHHhhcCCEEeeeeE
Confidence 89999999999998 7665554
No 171
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=52.99 E-value=12 Score=25.44 Aligned_cols=20 Identities=10% Similarity=0.380 Sum_probs=17.0
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
|++..++.|++||.|.|+=.
T Consensus 248 ~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 248 IIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHHHHHhhccCCEEEEEEc
Confidence 46788899999999998865
No 172
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=52.23 E-value=12 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=13.7
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
|++++.+.|+|||.+ ++|.
T Consensus 226 ii~~a~~~L~~gG~l-~~e~ 244 (284)
T TIGR00536 226 IIELAPDYLKPNGFL-VCEI 244 (284)
T ss_pred HHHHHHHhccCCCEE-EEEE
Confidence 467778889999865 4553
No 173
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=51.87 E-value=26 Score=17.84 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecCCceEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCERAIGNFWVM 81 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~~~~~~i 81 (85)
-+.++...+++..|+++..+...++.+.++
T Consensus 38 ~~~~di~~~~~~~g~~~~~~~~~~~~~~i~ 67 (70)
T PF01206_consen 38 AAVEDIPRWCEENGYEVVEVEEEGGEYRIL 67 (70)
T ss_dssp THHHHHHHHHHHHTEEEEEEEESSSSEEEE
T ss_pred cHHHHHHHHHHHCCCEEEEEEEeCCEEEEE
Confidence 355677889999999988887766555443
No 174
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=51.71 E-value=19 Score=18.67 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=15.9
Q ss_pred ccccCHHHHHHHHHhcCCCeeEE
Q 042653 49 GKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
|...+.++..++|++.||+....
T Consensus 16 G~~i~~~~i~~~L~~lg~~~~~~ 38 (70)
T PF03484_consen 16 GIDISPEEIIKILKRLGFKVEKI 38 (70)
T ss_dssp TS---HHHHHHHHHHTT-EEEE-
T ss_pred CCCCCHHHHHHHHHHCCCEEEEC
Confidence 55789999999999999998663
No 175
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=51.15 E-value=13 Score=24.91 Aligned_cols=19 Identities=16% Similarity=0.466 Sum_probs=16.0
Q ss_pred hhCCCCCEEEEEeeecCCC
Q 042653 7 KSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~ 25 (85)
+++++|.|++|+|.++-..
T Consensus 189 ~~l~~G~rVLIVDDv~~TG 207 (268)
T TIGR01743 189 RSLKTGSKVLIIDDFMKAG 207 (268)
T ss_pred hhCCCcCEEEEEeeecccC
Confidence 5788999999999888754
No 176
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=51.14 E-value=21 Score=19.35 Aligned_cols=23 Identities=9% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
++++.+.++|+|.+++.+.....
T Consensus 138 ~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 138 LRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred HHHHHHhcCCCcEEEEEeccCCC
Confidence 57788999999999998876543
No 177
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=50.79 E-value=22 Score=29.57 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCe----eEEEecCCceEEEEEEC
Q 042653 56 EFMTLATAAGFSG----ISCERAIGNFWVMEFYK 85 (85)
Q Consensus 56 e~~~ll~~aGf~~----~~~~~~~~~~~~ie~~~ 85 (85)
-++++++.+|+.+ .+|.++.++.+|||+.|
T Consensus 1568 lf~~if~~~gLd~~lfPYrV~aT~pGcGVIEviP 1601 (1803)
T KOG0902|consen 1568 LFKNIFQLVGLDLYLFPYRVVATAPGCGVIEVIP 1601 (1803)
T ss_pred HHHHHHHHcCCceEEeeeeeeccCCCCceEEeCC
Confidence 4688899999875 45677788999999876
No 178
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=50.45 E-value=19 Score=24.79 Aligned_cols=30 Identities=33% Similarity=0.403 Sum_probs=21.9
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEecCCceEEEE
Q 042653 51 ERTRHEFMTLATAAGFSGISCERAIGNFWVME 82 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~~~~~~~~ie 82 (85)
.+|..++..+|+.+||..+. ..++...++|
T Consensus 95 iyTKp~~~~lFk~~GF~~i~--~~~~~ivlmE 124 (352)
T COG3053 95 IYTKPEYAALFKQCGFSEIA--SAENVIVLME 124 (352)
T ss_pred EEechhHHHHHHhCCceEee--ccCceEEEee
Confidence 49999999999999998653 3333445544
No 179
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=50.30 E-value=15 Score=24.85 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=26.4
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEecC-CceEEEEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERAI-GNFWVMEF 83 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~~ie~ 83 (85)
.++-.+.++.++.++++||+.++.+... ..+++..+
T Consensus 283 ~S~Kfslq~irq~laa~gl~~v~~wtd~~qdf~~~l~ 319 (321)
T COG4301 283 ISRKFSLQAIRQQLAAAGLEPVQKWTDAIQDFGLSLA 319 (321)
T ss_pred hhhhCCHHHHHHHHHhcCCeEeeehhhhhhhhhhhee
Confidence 4555888999999999999999888543 34444433
No 180
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=50.10 E-value=21 Score=23.58 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=36.6
Q ss_pred HhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHH------------Hh----hcCCCccccCHHHHHHHHHhcCCCee
Q 042653 6 YKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVL------------MM----IQSPGGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~------------m~----~~~~~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
|+...|||.-||+|.+.+... .. .+.....|.=. |+ +....+...+++++...+=+||-..+
T Consensus 87 YEGygP~GvaiiVe~LTDN~N-RT-as~vR~~F~K~GG~lg~~GSV~~mF~~kGvi~~~~~~~~ed~l~e~~ieagaeDv 164 (241)
T COG0217 87 YEGYGPGGVAIIVEALTDNRN-RT-ASNVRSAFNKNGGNLGEPGSVSYMFDRKGVIVVEKNEIDEDELLEAAIEAGAEDV 164 (241)
T ss_pred EEeECCCceEEEEEeccCCcc-hh-HHHHHHHHHhcCCccCCCceEEEEEeccEEEEECCCCCCHHHHHHHHHHCCchhh
Confidence 456679999999998877542 22 11111122111 00 00012333688899888888888776
Q ss_pred EEE
Q 042653 70 SCE 72 (85)
Q Consensus 70 ~~~ 72 (85)
...
T Consensus 165 ~~~ 167 (241)
T COG0217 165 EED 167 (241)
T ss_pred hcC
Confidence 544
No 181
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=50.07 E-value=31 Score=22.63 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=13.5
Q ss_pred HhhCCCCCEEEEEeeecCC
Q 042653 6 YKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~ 24 (85)
++...|||.-+|+|...+.
T Consensus 87 YEg~gP~GvaiiVe~lTDN 105 (238)
T TIGR01033 87 YEGYAPGGVAIIVECLTDN 105 (238)
T ss_pred EEEEcCCceEEEEEEecCC
Confidence 3455688888888877654
No 182
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=50.06 E-value=19 Score=20.33 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCeeEE
Q 042653 54 RHEFMTLATAAGFSGISC 71 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~ 71 (85)
.+.|+..|+++||++.-+
T Consensus 81 ~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 81 PDSWKSILEAAGIKVETV 98 (103)
T ss_pred chhHHHHHHHCCCeeEEE
Confidence 568999999999987543
No 183
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=49.69 E-value=16 Score=25.84 Aligned_cols=62 Identities=3% Similarity=0.037 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhh------cCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMI------QSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~------~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
|+.+++.|+|||.+.+.-... .. +..+.+...-. ...+...+-..+|++-..+.|-.+.++.
T Consensus 218 L~e~~RvLkpGG~l~l~TD~~------~y---~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~~G~~Iy~l~ 285 (390)
T PRK14121 218 LNEALRVLKPGGTLELRTDSE------LY---FEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKKQNKDIYDLR 285 (390)
T ss_pred HHHHHHHcCCCcEEEEEEECH------HH---HHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHHHCCCCEEEEE
Confidence 678899999999988864221 11 11122221110 0001122345689999999998877664
No 184
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=49.33 E-value=65 Score=20.25 Aligned_cols=57 Identities=9% Similarity=0.128 Sum_probs=33.3
Q ss_pred hhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCHHHHHHHHHhcCCCeeEEEe
Q 042653 7 KSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 7 ~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
..+.||.|++|+|.++....+-.. ...+.- ..++. .|.. .+++.+++.|+.+..+..
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~------~i~~l~---~~Ga~V~~v~vlvdr~~-g~~~~l~~~gi~~~sl~~ 181 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVRE------AIEVVR---EAGAYIKYVITVVDREE-GAEENLKEADVELVPLVS 181 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHH------HHHHHH---HCCCEEEEEEEEEECCc-ChHHHHHHcCCcEEEEEE
Confidence 356789999999999876533211 111110 00111 1553 577778888987766654
No 185
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=48.98 E-value=17 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=14.8
Q ss_pred CHHHHHhhCCCCCEEEEEe
Q 042653 1 LLKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e 19 (85)
+++.+++.|+|||++.++-
T Consensus 152 ~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 152 LIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHHHccCCCEEEEEe
Confidence 3577888899999887764
No 186
>PRK10556 hypothetical protein; Provisional
Probab=48.89 E-value=25 Score=20.17 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhcCCCeeEEEe
Q 042653 53 TRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~ 73 (85)
..+|..+.|+.|||+...+.+
T Consensus 4 RPDEVArVLe~aGF~~D~vt~ 24 (111)
T PRK10556 4 RPDEVARVLEKAGFTVDVVTQ 24 (111)
T ss_pred ChHHHHHHHHhcCceEEEeec
Confidence 457899999999999866653
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.53 E-value=17 Score=23.90 Aligned_cols=17 Identities=6% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
.++.-+-|+|||+++|-
T Consensus 176 pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 176 PQELLDQLKPGGRLLIP 192 (237)
T ss_pred HHHHHHhhccCCeEEEe
Confidence 45677889999999875
No 188
>PRK03612 spermidine synthase; Provisional
Probab=48.37 E-value=14 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
++++++.|+|||.+++.-
T Consensus 398 ~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 398 YRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHhcCCCeEEEEec
Confidence 578899999999987653
No 189
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=48.29 E-value=31 Score=18.87 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.8
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEec
Q 042653 51 ERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
+-+.++.++.|++.||+++.....
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~ 30 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENE 30 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCc
Confidence 457788999999999999887644
No 190
>PRK00536 speE spermidine synthase; Provisional
Probab=48.05 E-value=17 Score=24.19 Aligned_cols=18 Identities=28% Similarity=0.433 Sum_probs=14.4
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
.+.|+++|+|||.++..-
T Consensus 154 y~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 154 IDGLKRMLKEDGVFISVA 171 (262)
T ss_pred HHHHHHhcCCCcEEEECC
Confidence 368999999999777653
No 191
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=47.72 E-value=22 Score=19.70 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=15.0
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 042653 53 TRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~ 72 (85)
-+.|..++|.+.||..++.-
T Consensus 2 ~Erel~~~L~~~Gf~v~R~~ 21 (88)
T PF01870_consen 2 FERELVKILWERGFAVVRAA 21 (88)
T ss_dssp HHHHHHHHHHHTT-EEEEBS
T ss_pred HHHHHHHHHHhCCcEEEEec
Confidence 35688999999999877654
No 192
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=47.14 E-value=17 Score=24.44 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.4
Q ss_pred CHHHHHhhCCCCCEEEEE
Q 042653 1 LLKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 1 iL~~~~~al~pggrlli~ 18 (85)
||.++.+.|+||++|++=
T Consensus 212 Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 212 ILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp HHHHHHHHS-TTSEEEEE
T ss_pred HHHHHHhhCCCCcEEEEe
Confidence 588999999999987765
No 193
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=47.08 E-value=22 Score=18.39 Aligned_cols=14 Identities=36% Similarity=0.650 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHhcC
Q 042653 52 RTRHEFMTLATAAG 65 (85)
Q Consensus 52 rt~~e~~~ll~~aG 65 (85)
++.+||.+++++.|
T Consensus 15 k~~~~W~~~~~~~~ 28 (61)
T PF14117_consen 15 KTLDEWLALAREGG 28 (61)
T ss_pred cCHHHHHHHHHHhC
Confidence 89999999999884
No 194
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.47 E-value=19 Score=23.30 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHhhCCCCCEEEEEee
Q 042653 4 NCYKSIPEDGKVIVVES 20 (85)
Q Consensus 4 ~~~~al~pggrlli~e~ 20 (85)
...+.|+|||++++-.-
T Consensus 154 ~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 154 ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred HHHHhcccCCEEEEEEc
Confidence 35678999999998875
No 195
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=46.20 E-value=19 Score=19.59 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=16.5
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
.|...|.+++...|+..|++.+.-
T Consensus 3 ~G~~ls~~~l~~eL~~LgYR~v~~ 26 (85)
T PF14814_consen 3 PGAPLSPAQLEQELELLGYRKVSN 26 (85)
T ss_dssp TT-S--HHHHHHHHHHTT-EE-SS
T ss_pred CCcccCHHHHHHHHHHcCCCcCCC
Confidence 577889999999999999998753
No 196
>PRK13605 endoribonuclease SymE; Provisional
Probab=46.05 E-value=11 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=10.3
Q ss_pred HHHHHhcCCCeeE
Q 042653 58 MTLATAAGFSGIS 70 (85)
Q Consensus 58 ~~ll~~aGf~~~~ 70 (85)
-.||++|||..-.
T Consensus 44 G~WLeeAGF~tG~ 56 (113)
T PRK13605 44 GQWLEAAGFATGT 56 (113)
T ss_pred chhHHhhCCCCCC
Confidence 4689999998743
No 197
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=45.30 E-value=19 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
+..+.+.|+|||.|++ |.++
T Consensus 161 ~~~~~~ll~~GG~ii~-dn~l 180 (234)
T PLN02781 161 HEQLLKLVKVGGIIAF-DNTL 180 (234)
T ss_pred HHHHHHhcCCCeEEEE-EcCC
Confidence 4567888999996554 5543
No 198
>PRK15450 signal transduction protein PmrD; Provisional
Probab=44.79 E-value=17 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=14.9
Q ss_pred CccccCHHHHHHHHHhcC
Q 042653 48 GGKERTRHEFMTLATAAG 65 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aG 65 (85)
..+.|+.+||..+.+.+|
T Consensus 68 ~As~Ys~deW~r~~~~~~ 85 (85)
T PRK15450 68 SASCYSPDEWERQCKKAG 85 (85)
T ss_pred eccccCHHHHHHHhccCC
Confidence 567799999999988765
No 199
>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown. Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....
Probab=44.77 E-value=20 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=15.0
Q ss_pred ccCHHHHHHHHHhcCCCeeEE
Q 042653 51 ERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~ 71 (85)
.--.++|..+|.++|.+..+.
T Consensus 24 ~glp~ew~~~l~~~~it~~~~ 44 (59)
T PF00786_consen 24 TGLPPEWEKLLKSSGITEEEI 44 (59)
T ss_dssp ES--HHHHHHHHSCTTSHHHH
T ss_pred ccCCHHHHhhccccCCCHHHh
Confidence 356789999999999876443
No 200
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=44.74 E-value=34 Score=21.79 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
...++|.+-|+++||+.....
T Consensus 28 ~A~~~Wn~~fe~~Gf~~a~~v 48 (197)
T cd04276 28 EGVLYWNKAFEKAGFKNAIIV 48 (197)
T ss_pred HHHHHHHHHHHhcCCCccEEE
Confidence 567899999999999986543
No 201
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=44.69 E-value=16 Score=22.83 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
++-+++.|+|||+|.| |.+-| .. +..-+. -|-.=.....-..|.+|||+-.+-+
T Consensus 69 ~~~~~~~l~pg~~lfV-eY~~D-~e---------T~~~L~------~G~pp~~TrLG~~Ll~~GFtwfKdW 122 (170)
T PF06557_consen 69 YKLFSRYLEPGGRLFV-EYVED-RE---------TRRQLQ------RGVPPAETRLGFSLLKAGFTWFKDW 122 (170)
T ss_dssp HHHHHTT----SEEEE-E-TT--HH---------HHHHHH------TT--GGGSHHHHHHHTTT--EEEEE
T ss_pred HHHHHHHhhhcCeEEE-EEecC-HH---------HHHHHH------cCCCcccchhHHHHHhCCcEEEeee
Confidence 4567788999998776 54432 10 011111 1222233356778889999987765
No 202
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=44.06 E-value=24 Score=22.89 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=17.6
Q ss_pred CHHHHHhhCCCCCEEEEEeeec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~ 22 (85)
+++++.+.++.||.+|++|.--
T Consensus 176 ~l~~l~~~~~~~g~~l~iDYG~ 197 (252)
T PF02636_consen 176 WLEQLAERLPKGGALLIIDYGY 197 (252)
T ss_dssp HHHHHHHHCCC-EEEEEEEEEE
T ss_pred HHHHHHHHHhhCCEEEEEeCCC
Confidence 3678888888889999999865
No 203
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.79 E-value=66 Score=20.85 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
++.+.+.++|+|+++++-...
T Consensus 201 ~~~~~~~l~~~G~iv~~G~~~ 221 (280)
T TIGR03366 201 VRACLESLDVGGTAVLAGSVF 221 (280)
T ss_pred HHHHHHHhcCCCEEEEeccCC
Confidence 456778899999999987543
No 204
>COG2922 Smg Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.78 E-value=41 Score=20.62 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=17.8
Q ss_pred ccccCHHHHHHHHHhcCCCeeEE
Q 042653 49 GKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
-..++.+.....|.+|||...++
T Consensus 18 ~l~vd~d~L~~~L~~aGF~~~dI 40 (157)
T COG2922 18 ELPVDQDSLENDLEDAGFDREDI 40 (157)
T ss_pred CCCcCHHHHHhHHHHcCCCHHHH
Confidence 44577889999999999986554
No 205
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=43.72 E-value=6.1 Score=26.36 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=18.3
Q ss_pred CHHHHHhhC----CCCCEEEEEeeecC
Q 042653 1 LLKNCYKSI----PEDGKVIVVESMIP 23 (85)
Q Consensus 1 iL~~~~~al----~pggrlli~e~~~~ 23 (85)
||+++.+.+ +|||+|+-.-..+.
T Consensus 197 iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 197 ILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp HHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred HHHHHHHhhcccccCCCeEEEEeccHH
Confidence 588999999 99998887765443
No 206
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=43.59 E-value=43 Score=20.52 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=18.5
Q ss_pred ccccCHHHHHHHHHhcCCCeeEEE
Q 042653 49 GKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
...-+.++..+.|.+|||...++.
T Consensus 18 ~~~~d~~~L~~~L~~aGF~~~eI~ 41 (155)
T PF04361_consen 18 DACPDQDDLTRELSAAGFEDEEIN 41 (155)
T ss_pred ccCCCHHHHHHHHHHcCCCHHHHH
Confidence 444578899999999999876553
No 207
>PRK04280 arginine repressor; Provisional
Probab=43.57 E-value=27 Score=21.23 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=18.5
Q ss_pred CccccCHHHHHHHHHhcCCCee
Q 042653 48 GGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
+-...|.+|..+.|++.||...
T Consensus 15 ~~~I~tQeeL~~~L~~~Gi~vT 36 (148)
T PRK04280 15 NNEIETQDELVDRLREEGFNVT 36 (148)
T ss_pred hCCCCCHHHHHHHHHHcCCCee
Confidence 4556899999999999999853
No 208
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=42.96 E-value=22 Score=16.91 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCCee
Q 042653 55 HEFMTLATAAGFSGI 69 (85)
Q Consensus 55 ~e~~~ll~~aGf~~~ 69 (85)
+++...+.+|||..+
T Consensus 1 ~e~a~Rl~~AgF~~i 15 (41)
T PF11590_consen 1 EETAERLRSAGFATI 15 (41)
T ss_dssp -HHHHHHHHTT-EEE
T ss_pred ChHHHHHHHHhHHHh
Confidence 367888999999764
No 209
>PF09400 DUF2002: Protein of unknown function (DUF2002); InterPro: IPR018994 This entry represents a group of putative cytoplasmic proteins. The structure of these proteins form an antiparallel beta sheet and contain some alpha helical regions. ; PDB: 2G7J_A.
Probab=42.69 E-value=33 Score=19.86 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.1
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 042653 53 TRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~ 72 (85)
..+|..+.|+.+||+..-+.
T Consensus 4 rpdeva~vle~~gf~~d~v~ 23 (111)
T PF09400_consen 4 RPDEVARVLEKAGFERDYVT 23 (111)
T ss_dssp -HHHHHHHHHHTT-EEEEEE
T ss_pred ChHHHHHHHHhcCceEEEee
Confidence 46799999999999976654
No 210
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=42.28 E-value=28 Score=18.41 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=14.0
Q ss_pred CccccCHHHHHHHHHhcCCCee
Q 042653 48 GGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
.....|.+|..+.|++.||.+.
T Consensus 16 ~~~i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 16 EHEISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp HS---SHHHHHHHHHHTT-T--
T ss_pred HCCcCCHHHHHHHHHHcCCCcc
Confidence 3446899999999999999853
No 211
>PRK03430 hypothetical protein; Validated
Probab=42.12 E-value=27 Score=21.61 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=18.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.+..-..++..+-|.+|||...++.
T Consensus 17 ~~~~pd~~~L~~~L~~aGF~~~eI~ 41 (157)
T PRK03430 17 AELRVDQDKLEDDLTDAGFHREDIY 41 (157)
T ss_pred cccCCCHHHHHHHHHHcCCCHHHHH
Confidence 3445678888888889998865543
No 212
>PRK09662 GspL-like protein; Provisional
Probab=41.88 E-value=26 Score=23.74 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCeeEEEec
Q 042653 55 HEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 55 ~e~~~ll~~aGf~~~~~~~~ 74 (85)
..|.++|+++|++..++.|-
T Consensus 8 q~wl~~l~~agl~~~~~vPD 27 (286)
T PRK09662 8 RNIAQWLQANGITRATVAPD 27 (286)
T ss_pred HHHHHHHHHcCCcceeecCC
Confidence 57999999999999998864
No 213
>PRK00110 hypothetical protein; Validated
Probab=41.67 E-value=69 Score=21.18 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=14.7
Q ss_pred HhhCCCCCEEEEEeeecCCC
Q 042653 6 YKSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~ 25 (85)
++...|||.-+|+|...+..
T Consensus 87 YEg~gP~GvaiiVe~lTDN~ 106 (245)
T PRK00110 87 YEGYGPGGVAIIVEALTDNR 106 (245)
T ss_pred EEEEcCCCeEEEEEEecCCH
Confidence 34557889999999876643
No 214
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=41.25 E-value=34 Score=17.46 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.1
Q ss_pred cCHHHHHHHHHhcCCCe
Q 042653 52 RTRHEFMTLATAAGFSG 68 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~ 68 (85)
.+.+++.++.+++||..
T Consensus 25 ~~~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF 41 (64)
T ss_pred CCHHHHHHHHHHcCCCC
Confidence 56788888888888765
No 215
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=40.95 E-value=13 Score=17.23 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.1
Q ss_pred CCEEEEEeeecCC
Q 042653 12 DGKVIVVESMIPE 24 (85)
Q Consensus 12 ggrlli~e~~~~~ 24 (85)
+|++.|.|.+.++
T Consensus 13 ~G~V~Vfd~v~~~ 25 (36)
T PF06200_consen 13 GGQVCVFDDVPPD 25 (36)
T ss_pred CCEEEEeCCCCHH
Confidence 7899999877554
No 216
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=40.95 E-value=34 Score=20.93 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.1
Q ss_pred HHHHHHHHhcCCCeeEEE
Q 042653 55 HEFMTLATAAGFSGISCE 72 (85)
Q Consensus 55 ~e~~~ll~~aGf~~~~~~ 72 (85)
.+|.+.++..||++..+.
T Consensus 40 ~~w~~~mk~~Gf~Vk~~~ 57 (149)
T COG3019 40 DEWAQHMKANGFEVKVVE 57 (149)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 589999999999976654
No 217
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=40.59 E-value=81 Score=19.30 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=12.2
Q ss_pred CCCCCEEEEEeeecCCC
Q 042653 9 IPEDGKVIVVESMIPEV 25 (85)
Q Consensus 9 l~pggrlli~e~~~~~~ 25 (85)
+.+|-+++|+|.++...
T Consensus 105 ~~~g~~VlIVDDvi~TG 121 (173)
T TIGR00336 105 LLEGDKVVVVEDVITTG 121 (173)
T ss_pred CCCCCEEEEEeccccCh
Confidence 45677888888777654
No 218
>PRK12378 hypothetical protein; Provisional
Probab=40.52 E-value=28 Score=22.86 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=14.4
Q ss_pred HhhCCCCCEEEEEeeecCCC
Q 042653 6 YKSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~~ 25 (85)
++...|||.-+|+|...+..
T Consensus 84 YEgygPgGvaiiVe~lTDN~ 103 (235)
T PRK12378 84 YEGFGPNGVMVIVECLTDNV 103 (235)
T ss_pred EEEEcCCCcEEEEEECCCCH
Confidence 34556889889999776643
No 219
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=40.14 E-value=30 Score=16.91 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=11.9
Q ss_pred HHHHHhcCCCeeEE
Q 042653 58 MTLATAAGFSGISC 71 (85)
Q Consensus 58 ~~ll~~aGf~~~~~ 71 (85)
..+|++.||+++.+
T Consensus 24 ~r~L~~~G~~Vi~I 37 (58)
T PF08373_consen 24 HRHLKALGYKVISI 37 (58)
T ss_pred HHHHHHCCCEEEEe
Confidence 67899999998766
No 220
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=39.88 E-value=32 Score=23.18 Aligned_cols=17 Identities=24% Similarity=0.626 Sum_probs=14.8
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
++.|+++|+|+|.++..
T Consensus 173 y~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 173 YEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHHhcCCCcEEEEe
Confidence 57899999999977776
No 221
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=39.80 E-value=23 Score=25.67 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=13.6
Q ss_pred CHHHHHhhCCCCCEEEE
Q 042653 1 LLKNCYKSIPEDGKVIV 17 (85)
Q Consensus 1 iL~~~~~al~pggrlli 17 (85)
|++++.+.|+|||.+++
T Consensus 251 il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 251 IAENAKQFLKPNGKIIL 267 (506)
T ss_pred HHHHHHHhccCCCEEEE
Confidence 46678889999998765
No 222
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=39.74 E-value=1.3e+02 Score=21.14 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=36.8
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
|.-+.+.|+|||..+=+-..+-...+.+ +. . ...+-+-|.++...+.+.-||++.+..
T Consensus 279 i~tI~~iLk~GGvWiNlGPLlYHF~d~~---------g~---~-~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 279 IDTIYKILKPGGVWINLGPLLYHFEDTH---------GV---E-NEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred HHHHHHhccCCcEEEeccceeeeccCCC---------CC---c-ccccccccHHHHHHHHHhcCcEEEEee
Confidence 4567888999986654443332111110 10 0 123567899999999999999987755
No 223
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=39.56 E-value=19 Score=15.18 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=8.8
Q ss_pred CCCCEEEEEee
Q 042653 10 PEDGKVIVVES 20 (85)
Q Consensus 10 ~pggrlli~e~ 20 (85)
.++|.|+|.|.
T Consensus 10 ~~~g~i~VaD~ 20 (28)
T PF01436_consen 10 DSDGNIYVADS 20 (28)
T ss_dssp ETTSEEEEEEC
T ss_pred eCCCCEEEEEC
Confidence 47899999983
No 224
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=39.14 E-value=15 Score=25.68 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=37.4
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCc----cccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGG----KERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g----~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+++++++++|||..++.|.+.-..-.++.. ...|+..-- ..| .+....+.-+++...||......
T Consensus 198 y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~----~~~~i~~~i--~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (364)
T KOG1269|consen 198 YAEIYRVLKPGGLFIVKEWIKTAKLKKPNS----EHVDILLEI--EGGDALPAETFNTDVFDLLKSFGFEHLKLE 266 (364)
T ss_pred HHHHhcccCCCceEEeHHHHHhhhccCCCc----ccccccCce--eccccccceeccccHHHHHhhccchhhhhc
Confidence 678899999999999999875433222210 012221100 011 34555566777777777765533
No 225
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=39.09 E-value=25 Score=24.69 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCEEEEEeeecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~ 23 (85)
.+.+.++++|||||+.-....+
T Consensus 317 ~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 317 WQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred HHHHHHHhCCCCEEEEeeCCCC
Confidence 5678899999999999887655
No 226
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=38.98 E-value=45 Score=22.28 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=35.4
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
|-+..+.|++.|.+.|++-.=-... ... .+.+...-... ..+.+.-..|++.|.+.|..+++++
T Consensus 103 lWRfw~~lP~~G~i~IF~RSWY~~v---l~~---rv~g~~~~~~~-~~~~~~I~~FEr~L~~~G~~IiKff 166 (264)
T TIGR03709 103 LWRIHKALPERGEIGIFNRSHYEDV---LVV---RVHGLIPKAIW-ERRYEDINDFERYLTENGTTILKFF 166 (264)
T ss_pred HHHHHHhCCCCCeEEEEcCccccch---hhh---hhcCCCCHHHH-HHHHHHHHHHHHHHHHCCcEEEEEE
Confidence 4567788999999999884211110 000 00000000000 2233556688888889998888875
No 227
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=38.67 E-value=27 Score=18.16 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=12.7
Q ss_pred HhhCCCCCEEEEEeeec
Q 042653 6 YKSIPEDGKVIVVESMI 22 (85)
Q Consensus 6 ~~al~pggrlli~e~~~ 22 (85)
.++|+||.+++|.=...
T Consensus 35 ~~~L~~G~kV~V~yd~~ 51 (61)
T PF07076_consen 35 FDGLKPGMKVVVFYDEV 51 (61)
T ss_pred ccccCCCCEEEEEEEcc
Confidence 36799999998875443
No 228
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=38.39 E-value=94 Score=18.97 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=11.4
Q ss_pred cCHHHHHHHHHhcCCCeeEE
Q 042653 52 RTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~ 71 (85)
.|..+..++++++|-+.+.+
T Consensus 128 ~Tl~~~~~~l~~~Ga~~v~v 147 (175)
T PRK02304 128 GTLEAAIKLLERLGAEVVGA 147 (175)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 34555666666666655443
No 229
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=37.71 E-value=32 Score=19.13 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=17.2
Q ss_pred CCccccCHHHHHHHHHhcCCCe
Q 042653 47 PGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
+|...+|.+++.+-|++.||..
T Consensus 37 TNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 37 TNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp ES-SSS-HHHHHHHHHHTTTT-
T ss_pred eCCCCCCHHHHHHHHHhcCcCC
Confidence 3788899999999999999985
No 230
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=37.38 E-value=15 Score=24.28 Aligned_cols=20 Identities=5% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHhhC-CCCCEEEEEeee
Q 042653 2 LKNCYKSI-PEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al-~pggrlli~e~~ 21 (85)
+.++.++| +|||++.++-.+
T Consensus 128 i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 128 IPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp HHHHHHHE-EEEEEEEEEESS
T ss_pred HHHHHHHHhcCCceEEEECCC
Confidence 56788999 889988887543
No 231
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=37.28 E-value=76 Score=17.63 Aligned_cols=14 Identities=21% Similarity=0.563 Sum_probs=8.6
Q ss_pred CCCEEEEEeeecCC
Q 042653 11 EDGKVIVVESMIPE 24 (85)
Q Consensus 11 pggrlli~e~~~~~ 24 (85)
+|-+++|+|.+++.
T Consensus 87 ~gk~vliVDDvi~t 100 (125)
T PF00156_consen 87 KGKRVLIVDDVIDT 100 (125)
T ss_dssp TTSEEEEEEEEESS
T ss_pred cceeEEEEeeeEcc
Confidence 45667777666653
No 232
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=37.23 E-value=28 Score=15.39 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=9.6
Q ss_pred HHHHHHHHHhc---CCCee
Q 042653 54 RHEFMTLATAA---GFSGI 69 (85)
Q Consensus 54 ~~e~~~ll~~a---Gf~~~ 69 (85)
.+||..|+.+| |++..
T Consensus 2 D~EW~~Li~eA~~~Gls~e 20 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLSKE 20 (30)
T ss_dssp -HHHHHHHHHHHHTT--HH
T ss_pred CHHHHHHHHHHHHcCCCHH
Confidence 36899988865 76653
No 233
>PRK06132 hypothetical protein; Provisional
Probab=37.06 E-value=27 Score=24.41 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=18.8
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
.+++..+|.||+.|+|-|.-+
T Consensus 324 ~~~i~~~l~~gssl~vsD~~~ 344 (359)
T PRK06132 324 RRRIAALLTPGSTLVITDQGI 344 (359)
T ss_pred HHHHHHhcCCCceEEEcCCCC
Confidence 678999999999999999765
No 234
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=36.94 E-value=53 Score=17.27 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCeeEEEe
Q 042653 54 RHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~~ 73 (85)
...+++-+.++||+-++++-
T Consensus 5 V~khR~~lRa~GLRPVqiWV 24 (65)
T PF11455_consen 5 VRKHRERLRAAGLRPVQIWV 24 (65)
T ss_pred HHHHHHHHHHcCCCcceeeC
Confidence 35678899999999999983
No 235
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=36.74 E-value=15 Score=23.07 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=14.4
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
|+.+++.|+|||+|.+.-
T Consensus 116 l~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 116 LELLARVLKPGGELYFAT 133 (195)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHcCCCCEEEEEe
Confidence 677889999999886653
No 236
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=36.29 E-value=11 Score=24.53 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=12.9
Q ss_pred HhhCCCCCEEEEEeeecCC
Q 042653 6 YKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 6 ~~al~pggrlli~e~~~~~ 24 (85)
++...|||..+|+|...+.
T Consensus 83 yEg~gP~Gvaiive~lTDN 101 (234)
T PF01709_consen 83 YEGYGPGGVAIIVECLTDN 101 (234)
T ss_dssp EEEEETTTEEEEEEEEES-
T ss_pred EEEEcCCCcEEEEEEeCCC
Confidence 4556688888888876653
No 237
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=36.27 E-value=47 Score=18.68 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.9
Q ss_pred ccCHHHHHHHHHhcCCCeeEE
Q 042653 51 ERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+.+.+|...|.+.+|++++..
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~ 27 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGT 27 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEE
Confidence 457889999999999998764
No 238
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=36.15 E-value=27 Score=23.43 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=31.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEEecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
-++.++.|+|||++.=+= ..+.... .-.|+ .....+.|+++||..++.....
T Consensus 228 Y~El~RiLkrgGrlFHYv---G~Pg~ry------rG~d~-------------~~gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 228 YRELYRILKRGGRLFHYV---GNPGKRY------RGLDL-------------PKGVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred HHHHHHHcCcCCcEEEEe---CCCCccc------ccCCh-------------hHHHHHHHHhcCceeeeeehhc
Confidence 367889999999987442 2111110 12232 2245678999999987766543
No 239
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=35.70 E-value=41 Score=24.05 Aligned_cols=19 Identities=16% Similarity=0.532 Sum_probs=16.0
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
+++....+.|||.++|+|.
T Consensus 208 ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 208 IERLWNLLAPGGHLVIVER 226 (484)
T ss_pred HHHHHHhccCCCeEEEEeC
Confidence 4667788899999999995
No 240
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=35.68 E-value=26 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=16.9
Q ss_pred CHHHHHHHHHhcCCCeeEEE
Q 042653 53 TRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~ 72 (85)
+.+.|+..++.|||+.+.+.
T Consensus 311 ~~~~W~~r~~~aGF~~~~ls 330 (374)
T PF03514_consen 311 RLEQWRRRMRRAGFRPVPLS 330 (374)
T ss_pred chhHHHHHHHhcCCeecCCC
Confidence 66899999999999976654
No 241
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=35.56 E-value=51 Score=18.07 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCccccCHHHHHHHHHhcC
Q 042653 38 YDVLMMIQSPGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 38 ~dl~m~~~~~~g~~rt~~e~~~ll~~aG 65 (85)
+|-+....+...+.|.+.|.+.||++--
T Consensus 45 fDs~e~NP~et~kqRrE~EV~~LLeKip 72 (80)
T PF08149_consen 45 FDSLEANPFETKKQRREREVRSLLEKIP 72 (80)
T ss_pred CCcccCCcccchhHHhHHHHHHHHHhCC
Confidence 5544333344788999999999998753
No 242
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=35.51 E-value=64 Score=17.02 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.9
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
-+..|...+|+.-||..++..
T Consensus 7 ~~~ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 7 MKAKEVIKALEKDGFQLVRQK 27 (66)
T ss_pred CCHHHHHHHHHhCCcEEEEee
Confidence 467899999999999988764
No 243
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=35.51 E-value=1.1e+02 Score=19.06 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=33.5
Q ss_pred hCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCH-HHHHHHHHhcCCCeeEEEec
Q 042653 8 SIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTR-HEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 8 al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~-~e~~~ll~~aGf~~~~~~~~ 74 (85)
++.+|.+++|+|.++....+-. ....+.- ..++. .|+. ..++.+.++.|+.+..+...
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~------~ai~ll~---~aGa~vv~v~~vvd~~~~~g~~~l~~~~gv~v~sl~~~ 176 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVI------ALIKAIE---NSGGIVSDVICVIEKTQNNGRKKLFTQTGINVKSLVKI 176 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHH------HHHHHHH---HCCCEEEEEEEEEEecccchHHHHhhccCCcEEEEEEE
Confidence 4668999999999987653211 1111111 01111 2443 45777778889887766654
No 244
>COG1438 ArgR Arginine repressor [Transcription]
Probab=35.43 E-value=40 Score=20.67 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=17.4
Q ss_pred CccccCHHHHHHHHHhcCCCee
Q 042653 48 GGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
.-+..|.+|..+.|++.||++.
T Consensus 17 ~~~i~TQ~Elv~~L~~~Gi~vT 38 (150)
T COG1438 17 EEKISTQEELVELLQEEGIEVT 38 (150)
T ss_pred hCCCCCHHHHHHHHHHcCCeEe
Confidence 4556889999999999998843
No 245
>PF14826 FACT-Spt16_Nlob: FACT complex subunit SPT16 N-terminal lobe domain; PDB: 3BIQ_A 3BIT_A 3BIP_A 3CB6_A 3CB5_A.
Probab=35.17 E-value=26 Score=21.54 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCCeeEEE
Q 042653 54 RHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~ 72 (85)
.++|.+.++.+||+.+++.
T Consensus 142 ~~~w~~~l~~~~~~~vDvs 160 (163)
T PF14826_consen 142 VDEWKEALKKSGFEKVDVS 160 (163)
T ss_dssp HHHHHHHHCHHCSEEEE-H
T ss_pred HHHHHHHHhhcCCceeecc
Confidence 5799999999999988874
No 246
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=35.16 E-value=41 Score=20.65 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.3
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
++.+.+.|+++|.|.|.=
T Consensus 108 f~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 108 FKSASQLLKPDGEIHVTL 125 (166)
T ss_pred HHHHHHhcCCCCEEEEEe
Confidence 567888899999888764
No 247
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=34.91 E-value=62 Score=15.91 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=16.0
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.+.++-.+.|+++||+.....
T Consensus 9 ~~~~~a~~~l~~~g~~~~~~~ 29 (63)
T PF03793_consen 9 MTYDEAKSILEAAGLTVNVVE 29 (63)
T ss_dssp SBHHHHHHHHHHTT-EEEEEE
T ss_pred CcHHHHHHHHHHCCCEEEEEE
Confidence 788999999999999654443
No 248
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=34.80 E-value=88 Score=20.03 Aligned_cols=31 Identities=19% Similarity=0.075 Sum_probs=26.4
Q ss_pred CCCccccCHHHHHHHHHhcCCCeeEEEecCC
Q 042653 46 SPGGKERTRHEFMTLATAAGFSGISCERAIG 76 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 76 (85)
++|-+.-|..+|+++.++.|+++.+.....+
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 5677789999999999999999988876543
No 249
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=34.13 E-value=46 Score=21.65 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=35.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhh--------c-----CCCccccCHHHHHHHHHhcCCCe
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMI--------Q-----SPGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~--------~-----~~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
|+.+.+.|+|||.|.+.-. . ...+. .++.-.+.. . ......+..++|++-+...|..+
T Consensus 147 l~~~a~~Lk~gG~l~~aTD---~---~~y~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE~k~~~~g~~i 217 (227)
T COG0220 147 LKLYARKLKPGGVLHFATD---N---EEYFE---WMMLEVLEHPPFLKFESEDLHYNLPPPDNNPVTEYEQKFRRLGHPV 217 (227)
T ss_pred HHHHHHHccCCCEEEEEec---C---HHHHH---HHHHHHHhcchhhhccccccccccccccCCCCcHHHHHHHhCCCce
Confidence 6788999999998876531 1 11110 001111100 0 11233477789999999999887
Q ss_pred eEEE
Q 042653 69 ISCE 72 (85)
Q Consensus 69 ~~~~ 72 (85)
....
T Consensus 218 ~~l~ 221 (227)
T COG0220 218 YDLE 221 (227)
T ss_pred EEEE
Confidence 6654
No 250
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=33.78 E-value=73 Score=16.37 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=16.8
Q ss_pred CHHHHHHHHHhcCCCeeEEEecCCc
Q 042653 53 TRHEFMTLATAAGFSGISCERAIGN 77 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~~~~ 77 (85)
+.+....++++.|+++..+...++.
T Consensus 38 s~~ni~~~~~~~g~~v~~~~~~~~~ 62 (69)
T cd03422 38 SINNIPIDARNHGYKVLAIEQSGPT 62 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCE
Confidence 4455677788888888766655443
No 251
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=33.76 E-value=1.2e+02 Score=18.79 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=32.9
Q ss_pred hCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCcc--------ccCHHHHHHHHHhcCCCeeEEEec
Q 042653 8 SIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGK--------ERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 8 al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~--------~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.+.+|-+++|+|.++....+-.. .....- ..|+. .|. +.+.+.+++.|+.+..+...
T Consensus 103 ~~~~g~~VlIVDDvitTG~Tl~~------~~~~l~---~~Ga~vv~~~vlvdr~-~~~~~~l~~~g~~v~sL~~~ 167 (176)
T PRK13812 103 RLDEGEEVVVLEDIATTGQSAVD------AVEALR---EAGATVNRVLVVVDRE-EGARENLADHDVELEALVTA 167 (176)
T ss_pred cCCCcCEEEEEEEeeCCCHHHHH------HHHHHH---HCCCeEEEEEEEEECC-cchHHHHHhcCCcEEEEEeH
Confidence 35678899999999886533211 111110 01211 133 46678888889887766644
No 252
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.
Probab=33.29 E-value=43 Score=15.68 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.0
Q ss_pred CHHHHHHHHHhcCCC
Q 042653 53 TRHEFMTLATAAGFS 67 (85)
Q Consensus 53 t~~e~~~ll~~aGf~ 67 (85)
-.++|..++..+|.+
T Consensus 27 ~p~~w~~l~~~~~is 41 (42)
T cd00132 27 LPPDLQSLFQTAGIS 41 (42)
T ss_pred CCHHHHHHHHHccCC
Confidence 356999999998864
No 253
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=33.06 E-value=1.4e+02 Score=19.26 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.7
Q ss_pred CCccccCHHHHHHHHHhcCCCeeEE
Q 042653 47 PGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
.+|..||.++.+++++ +|+..+-+
T Consensus 194 ~~GGi~s~edi~~l~~-~G~~~viv 217 (233)
T cd04723 194 AAGGVRSVEDLELLKK-LGASGALV 217 (233)
T ss_pred EeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 3788999999999987 68665443
No 254
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.88 E-value=84 Score=21.26 Aligned_cols=67 Identities=15% Similarity=0.068 Sum_probs=35.5
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCC---ChhhhhHHHHHHHH--hhcCCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNT---SIESKLNSHYDVLM--MIQSPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~---~~~~~~~~~~dl~m--~~~~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+|++|.+..+||+.++......+..... ..........++.. +.. .+ ....|++.++.+.||.....
T Consensus 191 ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--~~--~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 191 LLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVY--FG--DDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccccee--cc--CCHHHHHHHHHhcCEEEEec
Confidence 4788888888898777665311111111 10000000111111 111 12 55789999999999987665
No 255
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=32.73 E-value=1e+02 Score=17.67 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=21.8
Q ss_pred HHHHHhhcCCCccccCHHHHHHHHHhcCCCe
Q 042653 38 YDVLMMIQSPGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 38 ~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
+-.+++. .+|..-|.+....+|..+|-++
T Consensus 5 yA~Lll~--~~g~~iT~e~I~~IL~AAGv~v 33 (105)
T TIGR03685 5 YAALLLH--SAGKEINEENLKAVLEAAGVEV 33 (105)
T ss_pred HHHHHHH--hcCCCCCHHHHHHHHHHhCCcc
Confidence 3434444 4777999999999999999544
No 256
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=32.70 E-value=67 Score=18.30 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.6
Q ss_pred CCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 46 SPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
.+.+..-|.++...+++.+|.++...
T Consensus 12 ~d~~~~~Tae~I~~ilkAaGveve~~ 37 (103)
T cd05831 12 HDDGIEITADNINALLKAAGVNVEPY 37 (103)
T ss_pred ccCCCCCCHHHHHHHHHHcCCcccHH
Confidence 36888999999999999999776543
No 257
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.55 E-value=50 Score=15.96 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=13.5
Q ss_pred CHHHHHHHHHhcCCCe
Q 042653 53 TRHEFMTLATAAGFSG 68 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~ 68 (85)
+.++..+.|+++||+.
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (65)
T cd04882 49 DIEKAIEVLQERGVEL 64 (65)
T ss_pred CHHHHHHHHHHCCceE
Confidence 4778899999999974
No 258
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=32.18 E-value=52 Score=17.57 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=19.2
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.+..--.+++.+.|+..||+...+-
T Consensus 12 t~~~GlA~~~a~~L~~~Gf~v~~~~ 36 (90)
T PF13399_consen 12 TGVSGLAARVADALRNRGFTVVEVG 36 (90)
T ss_pred cCCcCHHHHHHHHHHHCCCceeecC
Confidence 3444566788999999999987664
No 259
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=32.00 E-value=62 Score=18.36 Aligned_cols=19 Identities=5% Similarity=0.151 Sum_probs=15.8
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
++++.+.|+||+..++...
T Consensus 45 ~~ev~~~L~~GssAl~~lv 63 (102)
T PF06897_consen 45 IKEVGEALKPGSSALFLLV 63 (102)
T ss_pred HHHHHhhcCCCceEEEEEe
Confidence 6889999999988777764
No 260
>PRK14702 insertion element IS2 transposase InsD; Provisional
Probab=31.88 E-value=50 Score=21.72 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCccccCHHHHHHHHHhcCCCeeE
Q 042653 46 SPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+++|.+++..+|.+++++.|.+..-
T Consensus 158 SD~Gsqy~s~~~~~~l~~~gI~~Sm 182 (262)
T PRK14702 158 TDNGSCYRANETRQFARMLGLEPKN 182 (262)
T ss_pred cCCCcccchHHHHHHHHHcCCeecc
Confidence 6789999999999999999987643
No 261
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=31.77 E-value=58 Score=21.17 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
|..+-+.|+||| |+|+|.++..
T Consensus 149 le~~~~lLr~GG-liv~DNvl~~ 170 (219)
T COG4122 149 LERALPLLRPGG-LIVADNVLFG 170 (219)
T ss_pred HHHHHHHhCCCc-EEEEeecccC
Confidence 456778899998 5555656543
No 262
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=31.71 E-value=58 Score=16.24 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.1
Q ss_pred CHHHHHHHHHhcCCCe
Q 042653 53 TRHEFMTLATAAGFSG 68 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~ 68 (85)
..++..+.|+++||++
T Consensus 49 ~~~~~~~~L~~~G~~v 64 (66)
T cd04908 49 DPDKAKEALKEAGFAV 64 (66)
T ss_pred CHHHHHHHHHHCCCEE
Confidence 4567889999999985
No 263
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=31.70 E-value=80 Score=16.16 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=18.1
Q ss_pred CHHHHHHHHHhcCCCeeEEEecCCceE
Q 042653 53 TRHEFMTLATAAGFSGISCERAIGNFW 79 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~~~~~~ 79 (85)
+.+...+++++.|+++......++.+.
T Consensus 38 s~~di~~~~~~~g~~~~~~~~~~~~~~ 64 (69)
T cd03423 38 TTRDIPKFCTFLGHELLAQETEDEPYR 64 (69)
T ss_pred hHHHHHHHHHHcCCEEEEEEEcCCEEE
Confidence 455667778888998877666444443
No 264
>cd01414 SAICAR_synt_Sc non-metazoan 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR) synthase. Eukaryotic, bacterial, and archaeal group of SAICAR synthetases represented by the Saccharomyces cerevisiae (Sc) enzyme, mostly absent in metazoans. SAICAR synthetase catalyzes the seventh step of the de novo biosynthesis of purine nucleotides (also reported as eighth step). It converts 5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP, and L-aspartate into 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide (SAICAR), ADP, and phosphate.
Probab=31.68 E-value=89 Score=21.10 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=31.9
Q ss_pred CCCEEEEEeee-cCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCee
Q 042653 11 EDGKVIVVESM-IPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 11 pggrlli~e~~-~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
.+|.|+++|.+ .||+. .++|......-..-...+.+-+++|+.+.|+...
T Consensus 201 ~~g~ivL~DEi~TPDs~---------R~W~~~~~~~g~~~~~lDK~~~R~~l~~~~~~~~ 251 (279)
T cd01414 201 ENGEIILIDEVLTPDSS---------RFWPADSYEPGKEQPSFDKQFVRDWLEASGWDKQ 251 (279)
T ss_pred CCCcEEEEEecCCCCcc---------eeeeccccccCCCccccChHHHHHHHHhcCCCcc
Confidence 45889999988 55442 2455432110001135899999999999999854
No 265
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=31.54 E-value=82 Score=19.18 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=22.0
Q ss_pred cCHHHHHHHHHhcCCCee------EEEecCCceEEEEEE
Q 042653 52 RTRHEFMTLATAAGFSGI------SCERAIGNFWVMEFY 84 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~------~~~~~~~~~~~ie~~ 84 (85)
-|+++.-+||..+|=-.. +...++.+++.||.+
T Consensus 48 ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy 86 (153)
T KOG0121|consen 48 TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYY 86 (153)
T ss_pred ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEe
Confidence 577888999999993222 123456677777764
No 266
>PRK05066 arginine repressor; Provisional
Probab=31.37 E-value=41 Score=20.61 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=18.1
Q ss_pred CccccCHHHHHHHHHhcCCC
Q 042653 48 GGKERTRHEFMTLATAAGFS 67 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~ 67 (85)
+-...|.+|..+.|++.||.
T Consensus 20 ~~~I~tQeeL~~~L~~~Gi~ 39 (156)
T PRK05066 20 EEKFGSQGEIVTALQEQGFD 39 (156)
T ss_pred hCCCCCHHHHHHHHHHCCCC
Confidence 66679999999999999999
No 267
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=31.32 E-value=1.1e+02 Score=17.65 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.2
Q ss_pred CCccccCHHHHHHHHHhcCCCeeE
Q 042653 47 PGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
.+|.+-|.+....+|+.+|-++..
T Consensus 12 ~~g~~it~e~I~~IL~AAGveVee 35 (106)
T PRK06402 12 SAGKEINEDNLKKVLEAAGVEVDE 35 (106)
T ss_pred hcCCCCCHHHHHHHHHHcCCCccH
Confidence 478899999999999999976543
No 268
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=31.32 E-value=67 Score=16.64 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=10.7
Q ss_pred HhcCCCeeEEEec
Q 042653 62 TAAGFSGISCERA 74 (85)
Q Consensus 62 ~~aGf~~~~~~~~ 74 (85)
+.+||.+.++.|.
T Consensus 48 ~~aGf~VtRiRP~ 60 (63)
T PHA00457 48 VPAGFVVTRIRPE 60 (63)
T ss_pred hccCcEEEEeccc
Confidence 4899999988764
No 269
>PRK11018 hypothetical protein; Provisional
Probab=31.26 E-value=89 Score=16.56 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=18.8
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecCCce
Q 042653 52 RTRHEFMTLATAAGFSGISCERAIGNF 78 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~~~~ 78 (85)
-+.+....+++..|+++.......+.+
T Consensus 46 ~a~~di~~~~~~~G~~v~~~~~~~g~~ 72 (78)
T PRK11018 46 QSINNIPLDARNHGYTVLDIQQDGPTI 72 (78)
T ss_pred cHHHHHHHHHHHcCCEEEEEEecCCeE
Confidence 455677888889999987766544333
No 270
>PRK03094 hypothetical protein; Provisional
Probab=31.16 E-value=56 Score=17.90 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=19.5
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEe
Q 042653 51 ERTRHEFMTLATAAGFSGISCER 73 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~ 73 (85)
+-+.+...+-|++.||+++++..
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEecCc
Confidence 46778899999999999988854
No 271
>PF13319 DUF4090: Protein of unknown function (DUF4090)
Probab=31.00 E-value=66 Score=17.58 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=19.9
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
|.+..+.++.-+.|.+|||...+-
T Consensus 55 GaKH~~q~~Lnq~L~~Ag~~~LK~ 78 (84)
T PF13319_consen 55 GAKHFDQEELNQRLIDAGWEGLKD 78 (84)
T ss_pred ccccCCHHHHHHHHHHcCccccch
Confidence 667788999999999999986543
No 272
>PLN02823 spermine synthase
Probab=30.82 E-value=47 Score=22.88 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=12.6
Q ss_pred HH-HHHhhCCCCCEEEE
Q 042653 2 LK-NCYKSIPEDGKVIV 17 (85)
Q Consensus 2 L~-~~~~al~pggrlli 17 (85)
++ .|++.|+|||.+++
T Consensus 202 ~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 202 YERIVKPKLNPGGIFVT 218 (336)
T ss_pred HHHHHHHhcCCCcEEEE
Confidence 44 78999999997655
No 273
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=30.38 E-value=1.5e+02 Score=19.37 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=15.6
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
+....++|+++|+++.+-..-
T Consensus 247 ~~~~~~~l~~~G~~v~~g~~~ 267 (306)
T cd08258 247 LEQALELLRKGGRIVQVGIFG 267 (306)
T ss_pred HHHHHHHhhcCCEEEEEcccC
Confidence 345668899999998876543
No 274
>PF01536 SAM_decarbox: Adenosylmethionine decarboxylase; InterPro: IPR001985 S-adenosylmethionine decarboxylase (AdoMetDC) [] catalyzes the removal of the carboxylate group of S-adenosylmethionine to form S-adenosyl-5'-3-methylpropylamine which then acts as the n-propylamine group donor in the synthesis of the polyamines spermidine and spermine from putrescine. The catalytic mechanism of AdoMetDC involves a covalently-bound pyruvoyl group. This group is post-translationally generated by a self-catalyzed intramolecular proteolytic cleavage reaction between a glutamate and a serine. This cleavage generates two chains, beta (N-terminal) and alpha (C-terminal). The N-terminal serine residue of the alpha chain is then converted by nonhydrolytic serinolysis into a pyruvyol group.; GO: 0004014 adenosylmethionine decarboxylase activity, 0006597 spermine biosynthetic process, 0008295 spermidine biosynthetic process; PDB: 3EP7_A 3EPA_B 3DZ5_A 3DZ2_B 3EPB_B 3DZ7_A 3EP6_A 3EP4_A 1JEN_A 3H0V_B ....
Probab=30.32 E-value=1.3e+02 Score=20.91 Aligned_cols=29 Identities=17% Similarity=0.043 Sum_probs=21.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEecCC
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERAIG 76 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 76 (85)
+=|..+.++|+++|+.|+-+++.......
T Consensus 29 ~LR~i~~~~w~~~L~~a~C~Ils~~sn~~ 57 (331)
T PF01536_consen 29 GLRSIPREFWDEMLDLAGCEILSEISNEH 57 (331)
T ss_dssp -GGGS-HHHHHHHHHHCT-EEEEEEE-SS
T ss_pred ccccCCHHHHHHHHHhcCCEEEEEEccCc
Confidence 44567999999999999999988876643
No 275
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.26 E-value=55 Score=16.29 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCCe
Q 042653 54 RHEFMTLATAAGFSG 68 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~ 68 (85)
.++..+.|+++||++
T Consensus 55 ~~~~~~~L~~~G~~v 69 (69)
T cd04909 55 RERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHcCCcC
Confidence 468888999999963
No 276
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.93 E-value=51 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.5
Q ss_pred CccccCHHHHHHHHHhcCCCee
Q 042653 48 GGKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~ 69 (85)
.++-.|-.+-+.+|+++||+.+
T Consensus 130 ~~k~iSm~~sek~Lk~~Gfke~ 151 (152)
T COG4808 130 ASKGISMKQSEKLLKAAGFKEV 151 (152)
T ss_pred ccccccHHHHHHHHHhcCcccC
Confidence 3466889999999999999865
No 277
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=29.61 E-value=86 Score=22.57 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.2
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+...-+..||.+++++||++-+-.
T Consensus 50 tae~wDP~eWar~fK~aGAKyvil 73 (430)
T COG3669 50 TAENWDPREWARLFKEAGAKYVIL 73 (430)
T ss_pred CcccCCHHHHHHHHHHcCCcEEEE
Confidence 566789999999999999986543
No 278
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=29.37 E-value=84 Score=15.68 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=18.5
Q ss_pred CHHHHHHHHHhcCCCeeEEEecCC
Q 042653 53 TRHEFMTLATAAGFSGISCERAIG 76 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~~~ 76 (85)
+..+...++++.|++.......++
T Consensus 38 ~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 38 AVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEEeCC
Confidence 577888899999999877665544
No 279
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=29.37 E-value=1.3e+02 Score=20.61 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCC----eeEEEecCCceEEEEEEC
Q 042653 56 EFMTLATAAGFS----GISCERAIGNFWVMEFYK 85 (85)
Q Consensus 56 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~~ 85 (85)
-+..++++.|.. -.++.+++...++||.++
T Consensus 76 lm~~i~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ 109 (311)
T cd05167 76 LFKNIFQSAGLDLYLFPYRVVATGPGCGVIEVVP 109 (311)
T ss_pred HHHHHHHHCCCCeEeEEEeEEecCCCceEEEEeC
Confidence 456777788853 456778877889999875
No 280
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.20 E-value=58 Score=15.90 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=13.4
Q ss_pred cCHHHHHHHHHhcCCC
Q 042653 52 RTRHEFMTLATAAGFS 67 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~ 67 (85)
-+.++..+.++++||+
T Consensus 47 ~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 47 TSIEKIIEAIEKAGYE 62 (62)
T ss_dssp SCHHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHhCcC
Confidence 5778899999999984
No 281
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=29.04 E-value=1.2e+02 Score=17.46 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.9
Q ss_pred CCccccCHHHHHHHHHhcCCCe
Q 042653 47 PGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
.+|.+-|.+....+|..+|-++
T Consensus 12 ~~G~eITae~I~~IL~AAGveV 33 (106)
T cd05832 12 YAGKEINEENLKKVLEAAGIEV 33 (106)
T ss_pred hcCCCCCHHHHHHHHHHhCCcc
Confidence 4778999999999999999554
No 282
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=28.81 E-value=61 Score=21.75 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=15.4
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
+....+.+++||+++++-.
T Consensus 239 ~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 239 INQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHHHhCcCCcEEEEEee
Confidence 4566788999999998874
No 283
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.73 E-value=65 Score=23.38 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.1
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
+++++++++|.-.|+|+|.+...
T Consensus 204 l~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 204 LKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HHHHHhhcCCCeEEEEEecccch
Confidence 57889999999999999988763
No 284
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=28.68 E-value=92 Score=15.94 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=17.2
Q ss_pred CHHHHHHHHHhcCCCeeEEEecCCceE
Q 042653 53 TRHEFMTLATAAGFSGISCERAIGNFW 79 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~~~~~~ 79 (85)
+.++...|++..|++.......++.+.
T Consensus 38 a~~di~~~~~~~G~~~~~~~~~~~~~~ 64 (69)
T cd03420 38 FARDAQAWCKSTGNTLISLETEKGKVK 64 (69)
T ss_pred HHHHHHHHHHHcCCEEEEEEecCCEEE
Confidence 445567778888888876665444333
No 285
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=28.57 E-value=60 Score=22.31 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=26.1
Q ss_pred CccccCHHHHHHHHHhcCCCe--------eEEEecCCceEEEEE
Q 042653 48 GGKERTRHEFMTLATAAGFSG--------ISCERAIGNFWVMEF 83 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~--------~~~~~~~~~~~~ie~ 83 (85)
=|.-||++|.+++-++-|+.. -++++.+-+..++|.
T Consensus 131 IGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~P~~IvE~ 174 (312)
T COG0549 131 IGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPKPVRIVEA 174 (312)
T ss_pred CCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCCCccchhH
Confidence 367799999999999877653 245566667777764
No 286
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=28.54 E-value=36 Score=17.14 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=11.5
Q ss_pred hCCCCCEEEEEeeec
Q 042653 8 SIPEDGKVIVVESMI 22 (85)
Q Consensus 8 al~pggrlli~e~~~ 22 (85)
++.|+|||++.-...
T Consensus 7 ~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 7 AVQSDGKILVAGYVD 21 (55)
T ss_pred EECCCCcEEEEEEee
Confidence 356899999998654
No 287
>TIGR03318 YdfZ_fam putative selenium-binding protein YdfZ. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none.
Probab=28.37 E-value=46 Score=17.44 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=12.6
Q ss_pred HHhhCCCCCEEEEEee
Q 042653 5 CYKSIPEDGKVIVVES 20 (85)
Q Consensus 5 ~~~al~pggrlli~e~ 20 (85)
=++++.+|+++.|.-.
T Consensus 7 nRNait~G~rVMia~t 22 (65)
T TIGR03318 7 NRNAITTGSRVMIAGT 22 (65)
T ss_pred cccccCCCcEEEEecC
Confidence 3678999999988753
No 288
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=28.24 E-value=1.2e+02 Score=17.28 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=19.9
Q ss_pred CCccccCHHHHHHHHHhcCCCeeE
Q 042653 47 PGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
.+|.+-|.++...+|..+|-++..
T Consensus 12 ~~g~~~ta~~I~~IL~aaGveVe~ 35 (105)
T cd04411 12 KGGKELTEDKIKELLSAAGAEIEP 35 (105)
T ss_pred hcCCCCCHHHHHHHHHHcCCCcCH
Confidence 477789999999999999976543
No 289
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=50 Score=20.74 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~ 23 (85)
+.-+++.|.|||+|.| |.+-|
T Consensus 76 ~~~l~~~lspg~~lfV-eYv~D 96 (192)
T COG4353 76 YKVLYNFLSPGGKLFV-EYVRD 96 (192)
T ss_pred HHHHHHhcCCCCceEE-EEEec
Confidence 4556789999998765 55543
No 290
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=28.19 E-value=26 Score=22.90 Aligned_cols=18 Identities=17% Similarity=0.499 Sum_probs=15.0
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
++.|++.|+|||.+++.-
T Consensus 174 ~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhcCCCcEEEEEc
Confidence 578999999999877765
No 291
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=28.12 E-value=79 Score=18.54 Aligned_cols=24 Identities=4% Similarity=0.019 Sum_probs=16.7
Q ss_pred cCHHHHHHHHHhcCCCeeEEEecC
Q 042653 52 RTRHEFMTLATAAGFSGISCERAI 75 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~~~~ 75 (85)
-+.+...+||++.|++...+...+
T Consensus 62 ~~v~~V~~wL~~~G~~~~~~~~~~ 85 (143)
T PF09286_consen 62 EDVAAVKSWLKSHGLTVVEVSANG 85 (143)
T ss_dssp HHHHHHHHHHHHCT-EEEEEETTT
T ss_pred HHHHHHHHHHHHcCCceeEEeCCC
Confidence 456677888999999988755443
No 292
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=28.06 E-value=57 Score=21.55 Aligned_cols=19 Identities=5% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
+..+.+.|+|+|+++++-.
T Consensus 214 ~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 214 IDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred HHHHHHhhhcCcEEEEEee
Confidence 4567789999999998864
No 293
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=27.94 E-value=56 Score=22.39 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=13.1
Q ss_pred HHHHhhCCCCCEEEEEe
Q 042653 3 KNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 3 ~~~~~al~pggrlli~e 19 (85)
..+.+.|+|||++++..
T Consensus 164 ~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 164 ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred HHHHHhcCCCCEEEEEe
Confidence 34667899999988854
No 294
>PHA03411 putative methyltransferase; Provisional
Probab=27.89 E-value=52 Score=22.27 Aligned_cols=17 Identities=6% Similarity=0.315 Sum_probs=15.1
Q ss_pred cCHHHHHHHHHhcCCCe
Q 042653 52 RTRHEFMTLATAAGFSG 68 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~ 68 (85)
-+.+||+++++++||..
T Consensus 193 l~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 193 MKSNKYLKWSKQTGLVT 209 (279)
T ss_pred CCHHHHHHHHHhcCcEe
Confidence 57899999999999974
No 295
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=27.81 E-value=1e+02 Score=16.58 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=18.6
Q ss_pred HHHHHHhhcCCCccccCHHHHHHHHHhc
Q 042653 37 HYDVLMMIQSPGGKERTRHEFMTLATAA 64 (85)
Q Consensus 37 ~~dl~m~~~~~~g~~rt~~e~~~ll~~a 64 (85)
..++.-+.+. |...++.+||...++.|
T Consensus 18 qaeLvALmwi-GRGd~~~eew~~a~~~A 44 (75)
T PF12616_consen 18 QAELVALMWI-GRGDFEAEEWEEAVAEA 44 (75)
T ss_pred HHHHHHHHHh-cCCCCCHHHHHHHHHHH
Confidence 3444443322 55589999999999987
No 296
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=27.81 E-value=72 Score=22.39 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.1
Q ss_pred ccccCHHHHHHHHHhcCCCeeEEE
Q 042653 49 GKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
+..++.+|..++++++||..+..-
T Consensus 334 ~~~~~~eel~~~i~~aG~~p~~Rd 357 (370)
T COG1060 334 GDWRSVEELAALIKEAGRIPVERD 357 (370)
T ss_pred CCCCCHHHHHHHHHHcCCCeeeec
Confidence 446899999999999999876543
No 297
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=27.48 E-value=82 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=18.7
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEV 25 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~ 25 (85)
|.+.....-|||+++=+|.+.++.
T Consensus 194 Lt~~~~~~~p~~~ViWYDSV~~~G 217 (526)
T KOG2331|consen 194 LTKVLHSSVPGGLVIWYDSVTDDG 217 (526)
T ss_pred HHHHHhhcCCCceEEEEeeeeecC
Confidence 344555677999999999998765
No 298
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=27.42 E-value=55 Score=20.87 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVP 26 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~ 26 (85)
|++....||||.++|-.....+...
T Consensus 141 L~~~~~~lk~G~~IIs~~~~~~~~~ 165 (205)
T PF08123_consen 141 LAELLLELKPGARIISTKPFCPRRR 165 (205)
T ss_dssp HHHHHTTS-TT-EEEESS-SS-TT-
T ss_pred HHHHHhcCCCCCEEEECCCcCCCCc
Confidence 4556677999999988877766543
No 299
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=27.02 E-value=63 Score=16.35 Aligned_cols=18 Identities=11% Similarity=0.353 Sum_probs=12.7
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
++.+++++.|+.. +.+|.
T Consensus 2 i~avr~~~g~~~~-l~vDa 19 (67)
T PF01188_consen 2 IRAVREAVGPDID-LMVDA 19 (67)
T ss_dssp HHHHHHHHSTTSE-EEEE-
T ss_pred HHHHHHhhCCCCe-EEEEC
Confidence 6788999988665 55564
No 300
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=26.91 E-value=61 Score=21.61 Aligned_cols=20 Identities=5% Similarity=0.130 Sum_probs=16.1
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
+....+++++||+++++-..
T Consensus 243 ~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 243 VELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred HHHHHHHhhcCCEEEEEccC
Confidence 45677899999999998754
No 301
>PF14001 YdfZ: YdfZ protein
Probab=26.85 E-value=45 Score=17.48 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=12.8
Q ss_pred HHhhCCCCCEEEEEee
Q 042653 5 CYKSIPEDGKVIVVES 20 (85)
Q Consensus 5 ~~~al~pggrlli~e~ 20 (85)
-+.++.+|+++.+...
T Consensus 6 nRN~i~~G~rVMiagt 21 (64)
T PF14001_consen 6 NRNAITTGSRVMIAGT 21 (64)
T ss_pred ccCcCCCCCEEEEcCC
Confidence 3678999999988764
No 302
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=26.73 E-value=53 Score=22.45 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred cCHHHHHHHHHhc-CCCeeEEEecCCceEEE
Q 042653 52 RTRHEFMTLATAA-GFSGISCERAIGNFWVM 81 (85)
Q Consensus 52 rt~~e~~~ll~~a-Gf~~~~~~~~~~~~~~i 81 (85)
..+.|..++.+.+ |++++......+.+.+|
T Consensus 255 fregEL~~lv~~~~~~~l~S~~~e~gnwcvV 285 (293)
T KOG1331|consen 255 FREGELAELVESVVGLRLLSSGYERGNWCVV 285 (293)
T ss_pred cchHHHHHHHhhccceEeeeeccccCCeEEE
Confidence 4567788888888 88877765544444544
No 303
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=26.44 E-value=2.3e+02 Score=19.68 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=22.3
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPN 27 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~ 27 (85)
|+++++|+...|.=++.|.++|.+..
T Consensus 165 l~~l~~ac~~sg~ElLLEvI~p~~~~ 190 (311)
T PF09863_consen 165 LRRLYDACRRSGHELLLEVIPPKDMP 190 (311)
T ss_pred HHHHHHHHHhcCcceeEEEecCCCCC
Confidence 68899999999999999998886643
No 304
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=26.39 E-value=64 Score=21.57 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.5
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
+..+.++|+|||+++++-.
T Consensus 249 ~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 249 INTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHhhcCCEEEEEcc
Confidence 3567788999999999874
No 305
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=25.69 E-value=77 Score=20.17 Aligned_cols=16 Identities=38% Similarity=0.719 Sum_probs=13.6
Q ss_pred HHhhCCCCCEEEEEee
Q 042653 5 CYKSIPEDGKVIVVES 20 (85)
Q Consensus 5 ~~~al~pggrlli~e~ 20 (85)
++++|+++|+|+-+|.
T Consensus 63 la~~l~~~g~i~tiE~ 78 (205)
T PF01596_consen 63 LAEALPEDGKITTIEI 78 (205)
T ss_dssp HHHTSTTTSEEEEEES
T ss_pred HHHhhcccceEEEecC
Confidence 4578999999999995
No 306
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.68 E-value=38 Score=22.71 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHhhCCCCCEEEEEeeecCC
Q 042653 5 CYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 5 ~~~al~pggrlli~e~~~~~ 24 (85)
++++|.|||.-+|+|...+.
T Consensus 113 ~ye~~gp~GV~liVealTdn 132 (276)
T KOG2972|consen 113 EYEAMGPSGVGLIVEALTDN 132 (276)
T ss_pred EEeeecCCceEEEEEeeecc
Confidence 36788899999999977654
No 307
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=25.45 E-value=66 Score=22.83 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=17.0
Q ss_pred CHHHHHhhCCCCCEEEEEeee
Q 042653 1 LLKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~ 21 (85)
|+..+.+-|+|||.+++.-+.
T Consensus 318 l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 318 LNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHHcCCCCEEEEEecC
Confidence 467788899999999888754
No 308
>PRK13961 phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional
Probab=25.24 E-value=1.5e+02 Score=20.24 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCCEEEEEeee-cCCCCCCChhhhhHHHHHHHHhhcCCCc---cccCHHHHHHHHHhcCCC
Q 042653 11 EDGKVIVVESM-IPEVPNTSIESKLNSHYDVLMMIQSPGG---KERTRHEFMTLATAAGFS 67 (85)
Q Consensus 11 pggrlli~e~~-~~~~~~~~~~~~~~~~~dl~m~~~~~~g---~~rt~~e~~~ll~~aGf~ 67 (85)
.+|.|+++|.+ .||+. .++|..-.- .| ...+.+-+++|+++.|+.
T Consensus 215 ~~g~iiL~DEI~TPDs~---------R~Wd~~~~e---~g~~~~~lDKq~~R~~l~~~~~~ 263 (296)
T PRK13961 215 EDGTLTLMDEVLTPDSS---------RFWPADSYQ---PGTSQPSFDKQFVRDWLETSGWD 263 (296)
T ss_pred CCCcEEEEeeccCCCcc---------eeccccccc---cCCcccccCHHHHHHHHHhcCCC
Confidence 46889999988 55432 255553221 22 236788999999999986
No 309
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=25.23 E-value=1.8e+02 Score=20.47 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCC----eeEEEecCCceEEEEEEC
Q 042653 56 EFMTLATAAGFS----GISCERAIGNFWVMEFYK 85 (85)
Q Consensus 56 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~~ 85 (85)
.+..++++.|+. ..++.+++...++||++|
T Consensus 114 lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ 147 (354)
T cd00895 114 IMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIP 147 (354)
T ss_pred HHHHHHHHcCCCceEEEEEEEecCCCceEEEEeC
Confidence 567788888843 366678888899999875
No 310
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=25.08 E-value=1.8e+02 Score=18.16 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccc--------cCHHHHHHHHHhcCCCeeEEEec
Q 042653 11 EDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKE--------RTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 11 pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~--------rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
+|-+++|+|.++....+-. ...++..- .|+.. |. +.+++.+++.|+.+..+...
T Consensus 112 ~g~~VliVDDvi~tG~Tl~------~~~~~l~~---~Ga~~v~~~vlv~~~-~~~~~~~~~~g~~~~sl~~~ 173 (202)
T PRK00455 112 FGKRVLVVEDVITTGGSVL------EAVEAIRA---AGAEVVGVAVIVDRQ-SAAQEVFADAGVPLISLITL 173 (202)
T ss_pred CCCEEEEEecccCCcHHHH------HHHHHHHH---cCCEEEEEEEEEECc-chHHHHHHhcCCcEEEEeeH
Confidence 4779999999988653211 12222111 12222 33 67899999999988776654
No 311
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=25.07 E-value=1e+02 Score=21.12 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=16.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+....+.++|.+++++||++-+-+
T Consensus 87 ~p~~fD~dqW~~~ak~aGakY~Vl 110 (346)
T PF01120_consen 87 NPTKFDADQWAKLAKDAGAKYVVL 110 (346)
T ss_dssp --TT--HHHHHHHHHHTT-SEEEE
T ss_pred CcccCCHHHHHHHHHHcCCCEEEe
Confidence 445689999999999999986544
No 312
>KOG2698 consensus GTP cyclohydrolase I [Coenzyme transport and metabolism]
Probab=24.92 E-value=2.1e+02 Score=18.82 Aligned_cols=51 Identities=25% Similarity=0.292 Sum_probs=29.0
Q ss_pred HHhhCCCCCEEEEEee----ecCCC--CCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHH
Q 042653 5 CYKSIPEDGKVIVVES----MIPEV--PNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLAT 62 (85)
Q Consensus 5 ~~~al~pggrlli~e~----~~~~~--~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~ 62 (85)
+.++++|+|..+|+|. ++-.. ...+ ......|+..+ .....|.+||-+++.
T Consensus 189 ~s~~v~p~gVaVV~Ea~HmCMVmRGvqK~~S------sTvTs~mlGvF-r~d~ktReeFl~li~ 245 (247)
T KOG2698|consen 189 LSQAVQPAGVAVVVEATHMCMVMRGVQKIGS------STVTSTMLGVF-RDDPKTREEFLNLIN 245 (247)
T ss_pred HHHhcCccceEEEEecceeeeeeecccccCc------chhhhhhhhhh-ccCchhHHHHHHHhc
Confidence 4567899999999995 11111 1111 12333454333 344567888888764
No 313
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=24.85 E-value=79 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=25.7
Q ss_pred CCccccCHHHHHHHHHhcCCCeeEEEecCC
Q 042653 47 PGGKERTRHEFMTLATAAGFSGISCERAIG 76 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~~~~~~~~~ 76 (85)
.-|.+.+.+++...|.+.||+.+..+..++
T Consensus 162 ~~G~~i~~~~l~~~L~~~GY~r~~~v~~~G 191 (652)
T PRK05298 162 RVGQEIDRRELLRRLVDLQYERNDIDFQRG 191 (652)
T ss_pred eCCCCcCHHHHHHHHHHcCCcccCccCCCc
Confidence 378889999999999999999888775554
No 314
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=24.79 E-value=78 Score=21.15 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=15.8
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
+....+++++||+++++-..
T Consensus 237 ~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 237 VPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred HHHHHHhhCCCcEEEEEecc
Confidence 45667889999999988753
No 315
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.73 E-value=94 Score=15.41 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.3
Q ss_pred cCHHHHHHHHHhcCCCee
Q 042653 52 RTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~ 69 (85)
...++..+.|+++||++.
T Consensus 52 ~~~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 52 MNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCHHHHHHHHHHCCCeee
Confidence 355688999999999764
No 316
>PLN02476 O-methyltransferase
Probab=24.67 E-value=2.3e+02 Score=19.13 Aligned_cols=21 Identities=5% Similarity=0.227 Sum_probs=13.9
Q ss_pred HHHHHhhCCCCCEEEEEeeecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~ 23 (85)
+..+.+.|+|||.|+ +|.++-
T Consensus 211 ~e~~l~lL~~GGvIV-~DNvL~ 231 (278)
T PLN02476 211 FELLLQLVRVGGVIV-MDNVLW 231 (278)
T ss_pred HHHHHHhcCCCcEEE-EecCcc
Confidence 456677889998654 465543
No 317
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=24.47 E-value=66 Score=19.65 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.7
Q ss_pred CHHHHHHHHHhcCCCeeEE
Q 042653 53 TRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~ 71 (85)
....|.++|+++||+.++.
T Consensus 14 ~~~~~~~~l~~~g~~~~~~ 32 (194)
T PRK10975 14 SDTALLDALQQLGFQLVEG 32 (194)
T ss_pred hhhHHHHHHHhcCCEeeee
Confidence 4567899999999997664
No 318
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=24.42 E-value=91 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=18.3
Q ss_pred CccccCHHHHHHHHHhcCCCeeE
Q 042653 48 GGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+....|.++|.++++.+||...+
T Consensus 112 ~~~~V~~~~w~~l~~~~g~~~~~ 134 (172)
T cd04790 112 EQRLVTKEKWVAILKAAGMDEAD 134 (172)
T ss_pred ccccCCHHHHHHHHHHcCCChHH
Confidence 45567899999999999987543
No 319
>KOG3451 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=51 Score=17.51 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHhhCCCCCEEEEEee
Q 042653 4 NCYKSIPEDGKVIVVES 20 (85)
Q Consensus 4 ~~~~al~pggrlli~e~ 20 (85)
|.-+.++||++++|-|.
T Consensus 22 nmd~sm~~~skfii~eL 38 (71)
T KOG3451|consen 22 NMDDSMQLGSKFIIEEL 38 (71)
T ss_pred hccccCCCCCCeeEEEe
Confidence 44567889999988773
No 320
>PF11250 DUF3049: Protein of unknown function (DUF3049); InterPro: IPR021410 This eukaryotic family of proteins has no known function.
Probab=24.26 E-value=1e+02 Score=15.66 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.9
Q ss_pred CCCCEEEEEeeecCC
Q 042653 10 PEDGKVIVVESMIPE 24 (85)
Q Consensus 10 ~pggrlli~e~~~~~ 24 (85)
+.+|||++.+..++.
T Consensus 24 r~dGRLvl~~v~v~~ 38 (56)
T PF11250_consen 24 REDGRLVLEEVRVPS 38 (56)
T ss_pred ccCCEEEEEEEEcCC
Confidence 468999999887764
No 321
>PHA02517 putative transposase OrfB; Reviewed
Probab=24.24 E-value=75 Score=20.66 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.1
Q ss_pred CCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 46 SPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+++|.+++..+|..++++.|.+....
T Consensus 175 sD~G~~y~s~~~~~~~~~~gi~~~~~ 200 (277)
T PHA02517 175 SDKGSQYVSLAYTQRLKEAGIRASTG 200 (277)
T ss_pred cccccccchHHHHHHHHHcCcccccC
Confidence 57899999999999999999875433
No 322
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=24.19 E-value=1.1e+02 Score=15.55 Aligned_cols=18 Identities=11% Similarity=0.294 Sum_probs=12.8
Q ss_pred HHHhhCCCCCEEEEEeee
Q 042653 4 NCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 4 ~~~~al~pggrlli~e~~ 21 (85)
+..++|+||..+.++...
T Consensus 18 ~~~~~L~~Ge~l~lv~d~ 35 (69)
T PF10006_consen 18 EALDELPPGETLELVNDH 35 (69)
T ss_pred HHHHcCCCCCEEEEEeCC
Confidence 345678999888777643
No 323
>PRK10347 cell filamentation protein Fic; Provisional
Probab=24.09 E-value=96 Score=19.85 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCccccCHHHHH-HHHHhcCCCe
Q 042653 37 HYDVLMMIQSPGGKERTRHEFM-TLATAAGFSG 68 (85)
Q Consensus 37 ~~dl~m~~~~~~g~~rt~~e~~-~ll~~aGf~~ 68 (85)
+-+++....+..|-.||..-|- .++..|||.+
T Consensus 128 ~~eln~iHPFREGNGRt~r~f~~~la~~aG~~i 160 (200)
T PRK10347 128 YCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL 160 (200)
T ss_pred HHHHhHhccccCCCHHHHHHHHHHHHHHcCCCC
Confidence 3345555556688889999884 5556899964
No 324
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=24.04 E-value=49 Score=23.13 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhc-CCCccccCHHHHHHHHHhcCCCeeE
Q 042653 9 IPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQ-SPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 9 l~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~-~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
|+..||-.+....+|..--+- ....+|+.|-.. ...++.-..+.|++-.+.+||++..
T Consensus 283 lrqr~RpylFSnslppavV~~----a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftIsg 341 (417)
T KOG1359|consen 283 LRQRSRPYLFSNSLPPAVVGM----AAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTISG 341 (417)
T ss_pred HHhcCCceeecCCCChhhhhh----hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCceecC
Confidence 344555566655554322111 235788887432 1134555667888999999999754
No 325
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=24.02 E-value=1.3e+02 Score=19.57 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHhhc-CCCccccCHHHHHHHHHhcCCCeeEE
Q 042653 38 YDVLMMIQ-SPGGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 38 ~dl~m~~~-~~~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+|...++. .+++-.-+.+-.+.|.++-|++.++-
T Consensus 165 lDvLLLAkELdaavVssD~Gir~WAe~LGlrfv~a 199 (221)
T COG1458 165 LDVLLLAKELDAAVVSSDEGIRTWAEKLGLRFVDA 199 (221)
T ss_pred hHHHHHHHHhCceEEecchhHHHHHHHhCCeeeCH
Confidence 56665543 23556677888899999999887653
No 326
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=23.65 E-value=95 Score=17.87 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCeeEEEecCC
Q 042653 54 RHEFMTLATAAGFSGISCERAIG 76 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~~~~~ 76 (85)
-..-..+++++||+.+.....+.
T Consensus 124 N~~~~~~~~k~GF~~~g~~~~~~ 146 (152)
T PF13523_consen 124 NTRAIRLYEKAGFRKVGEFEFPD 146 (152)
T ss_dssp -HHHHHHHHHTT-EEEEEEEESS
T ss_pred CHHHHHHHHHcCCEEeeEEECCC
Confidence 44668899999999998887654
No 327
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=23.59 E-value=57 Score=22.50 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=10.9
Q ss_pred cCHHHHHHHHHhcCCCee
Q 042653 52 RTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~ 69 (85)
.+.++.-+.++++|++++
T Consensus 109 ~rwd~l~~F~~~tG~~li 126 (319)
T PF03662_consen 109 SRWDELNNFAQKTGLKLI 126 (319)
T ss_dssp ---HHHHHHHHHHT-EEE
T ss_pred hHHHHHHHHHHHhCCEEE
Confidence 456777778889998764
No 328
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=23.36 E-value=65 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred CccccCHHHHHHHHHhcCCCe
Q 042653 48 GGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~ 68 (85)
+|.+-....|++++.+|||.-
T Consensus 85 d~sd~Nl~~W~~~L~ka~l~~ 105 (148)
T PF06711_consen 85 DGSDENLQRWRRILQKAGLSP 105 (148)
T ss_pred cCCHHHHHHHHHHHHHcCCCC
Confidence 788889999999999999963
No 329
>PRK00304 hypothetical protein; Provisional
Probab=23.25 E-value=78 Score=17.12 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHhhCCCCCEEEEEee
Q 042653 3 KNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~ 20 (85)
.+|+++|+.|-.+|+++.
T Consensus 39 ~qv~~qL~~G~~vIvfse 56 (75)
T PRK00304 39 LRVRQALTKGQAVILFDP 56 (75)
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 578899999988888874
No 330
>TIGR03253 oxalate_frc formyl-CoA transferase. This enzyme, formyl-CoA transferase, transfers coenzyme A from formyl-CoA to oxalate. It forms a pathway, together with oxalyl-CoA decarboxylase, for oxalate degradation; decarboxylation by the latter gene regenerates formyl-CoA. The two enzymes typically are encoded by a two-gene operon.
Probab=23.16 E-value=91 Score=22.01 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.5
Q ss_pred cccCHHHHHHHHHhcCCCeeEEE
Q 042653 50 KERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
..+|.+||.++|+++|.-...+.
T Consensus 316 ~~~t~~ew~~~l~~~~vp~~pV~ 338 (415)
T TIGR03253 316 ATKDKFEVTEWLNQYGIPCGPVL 338 (415)
T ss_pred hcCCHHHHHHHHHHcCcCeEecC
Confidence 34899999999999997765544
No 331
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=23.13 E-value=65 Score=23.28 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.5
Q ss_pred ccccCHHHHHHHHHhc---CCCeeEEEec
Q 042653 49 GKERTRHEFMTLATAA---GFSGISCERA 74 (85)
Q Consensus 49 g~~rt~~e~~~ll~~a---Gf~~~~~~~~ 74 (85)
|.+.|.++|++.++++ +|-+.+.++.
T Consensus 357 G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 357 GWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred CCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 7889999999999976 6766655544
No 332
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.12 E-value=70 Score=22.04 Aligned_cols=27 Identities=22% Similarity=0.145 Sum_probs=22.0
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
++..+|.+|+++|.+-|--..++++|.
T Consensus 79 ~~~~YT~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 79 YGGFYTQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred cCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 356799999999999887777777765
No 333
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=23.05 E-value=76 Score=22.38 Aligned_cols=19 Identities=5% Similarity=0.051 Sum_probs=14.5
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
++.+.+.|+|||.++.+-+
T Consensus 322 ~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 322 NMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred HHHHHHHcCCCeEEEEEeC
Confidence 3456788999999888764
No 334
>PRK04140 hypothetical protein; Provisional
Probab=22.97 E-value=97 Score=21.34 Aligned_cols=31 Identities=23% Similarity=0.154 Sum_probs=21.2
Q ss_pred ccCHHHHHHHHHhcCCCeeEEEec-CCceEEE
Q 042653 51 ERTRHEFMTLATAAGFSGISCERA-IGNFWVM 81 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~~i 81 (85)
++-.++..++|.++||.+.+.... +..+.++
T Consensus 3 ~~li~~v~~~L~~~gf~vs~~~~~~~~~fdi~ 34 (317)
T PRK04140 3 EALISEVIALLEDAGFKVSDRCPIRPSCFDLV 34 (317)
T ss_pred HHHHHHHHHHHHHCCCEEEeeccCCCceEEEE
Confidence 445678899999999998864433 2345554
No 335
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=22.92 E-value=1.7e+02 Score=17.03 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHHHhhcCCCccccCHHHHHHHHHhcCCCeeE
Q 042653 38 YDVLMMIQSPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 38 ~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+...++. ..|++-|.+....+++.+|-.+..
T Consensus 5 ~a~llL~--~agkei~e~~l~~vl~aaGveve~ 35 (109)
T COG2058 5 YAYLLLH--LAGKEITEDNLKSVLEAAGVEVEE 35 (109)
T ss_pred HHHHHHH--HccCcCCHHHHHHHHHHcCCCccH
Confidence 3434443 378899999999999999987643
No 336
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=22.90 E-value=79 Score=13.20 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=14.9
Q ss_pred CCccccCHHHHHHHHH-hcC
Q 042653 47 PGGKERTRHEFMTLAT-AAG 65 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~-~aG 65 (85)
.+...-+.+|+.++++ +.|
T Consensus 12 d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 12 DGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp TSSSEEEHHHHHHHHHHHTT
T ss_pred CCCCcCcHHHHHHHHHHhcC
Confidence 3566789999999998 555
No 337
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=22.83 E-value=30 Score=22.12 Aligned_cols=16 Identities=6% Similarity=0.235 Sum_probs=12.2
Q ss_pred HHHhhCCCCCEEEEEe
Q 042653 4 NCYKSIPEDGKVIVVE 19 (85)
Q Consensus 4 ~~~~al~pggrlli~e 19 (85)
...+.|++||+|++--
T Consensus 157 ~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 157 ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp HHHHTEEEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEE
Confidence 4556789999998854
No 338
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.62 E-value=80 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=17.7
Q ss_pred CHHHHHhhCCCCCEEEEEeeec
Q 042653 1 LLKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~ 22 (85)
++++++++++|.+++|.+....
T Consensus 133 lv~~Lr~~~~~~~kllt~~~~~ 154 (255)
T cd06542 133 LIKELRKYMGPTDKLLTIDGYG 154 (255)
T ss_pred HHHHHHHHhCcCCcEEEEEecC
Confidence 4688899998888999988643
No 339
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=22.56 E-value=2.3e+02 Score=20.04 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCC----eeEEEecCCceEEEEEEC
Q 042653 56 EFMTLATAAGFS----GISCERAIGNFWVMEFYK 85 (85)
Q Consensus 56 e~~~ll~~aGf~----~~~~~~~~~~~~~ie~~~ 85 (85)
-+..+++++|+. ..++.+++...++||+++
T Consensus 121 lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ 154 (366)
T cd05175 121 IMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVR 154 (366)
T ss_pred HHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcC
Confidence 456778888864 356778888899999875
No 340
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=22.54 E-value=67 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=19.0
Q ss_pred CccccCHHHHHHHHHhcCCCe
Q 042653 48 GGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~ 68 (85)
-|.+|+.++|.+.|+..+|+-
T Consensus 299 Vg~eRDieqF~E~FenP~FR~ 319 (554)
T KOG2535|consen 299 VGMERDIEQFKEYFENPAFRP 319 (554)
T ss_pred CchhhhHHHHHHHhcCcCcCC
Confidence 388999999999999999875
No 341
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=22.40 E-value=2.2e+02 Score=19.18 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=14.8
Q ss_pred HHHHHhhCCCCCEEEEEeeecCC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPE 24 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~ 24 (85)
.+.+++.|++.|.++.+=...++
T Consensus 119 y~~~~rvLRk~Gg~iavW~Y~dd 141 (261)
T KOG3010|consen 119 YKEAYRVLRKDGGLIAVWNYNDD 141 (261)
T ss_pred HHHHHHHcCCCCCEEEEEEccCC
Confidence 46788999887755555444433
No 342
>PHA02126 hypothetical protein
Probab=22.40 E-value=60 Score=19.33 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=8.7
Q ss_pred CCCEEEEEee
Q 042653 11 EDGKVIVVES 20 (85)
Q Consensus 11 pggrlli~e~ 20 (85)
|||.|+|.|-
T Consensus 52 pggalivadr 61 (153)
T PHA02126 52 PGGALIVADR 61 (153)
T ss_pred CCceEEEecH
Confidence 7999999985
No 343
>PF12912 N_NLPC_P60: NLPC_P60 stabilising domain, N term; PDB: 3M1U_B.
Probab=22.40 E-value=87 Score=18.07 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=15.5
Q ss_pred CCccccCHHHHHHHHHhcCCC
Q 042653 47 PGGKERTRHEFMTLATAAGFS 67 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~ 67 (85)
.|.+.++.+.|.++.+.|.|.
T Consensus 102 eN~~p~~~~~~~~l~~nan~~ 122 (124)
T PF12912_consen 102 ENLRPIDPEWFDALIANANFE 122 (124)
T ss_dssp TTSSB--HHHHHHHHHHC-GG
T ss_pred cCCCCCCHHHHHHHHHhcCcc
Confidence 478889999999999999875
No 344
>PF05134 T2SL: Type II secretion system (T2SS), protein L; InterPro: IPR024230 The general secretion pathway of Gram-negative bacteria is responsible for extracellular secretion of a number of different proteins, including proteases and toxins. This pathway supports secretion of proteins across the cell envelope in two distinct steps, in which the second step, involving translocation through the outer membrane, is assisted by at least 13 different gene products. GspL is predicted to contain a large cytoplasmic domain and has been shown to interact with the autophosphorylating cytoplasmic membrane protein GspE. It is thought that the tri-molecular complex of GspL, GspE and GspM might be involved in regulating the opening and closing of the secretion pore and/or transducing energy to the site of outer membrane translocation []. This N-terminal domain is found in general secretion pathway protein L sequences from several Gram-negative bacteria. It is a cytoplasmic domain that shows structural homology with the superfamily of actin-like ATPases []. ; PDB: 2BH1_B 1YF5_L 1W97_L.
Probab=22.26 E-value=1.1e+02 Score=19.52 Aligned_cols=22 Identities=14% Similarity=0.154 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhcCCCeeEEEec
Q 042653 53 TRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~ 74 (85)
-.+.|.+.++++|++...+.|.
T Consensus 113 ~l~~wl~~l~~~Gl~~~~v~Pd 134 (230)
T PF05134_consen 113 RLQRWLDALAAAGLEPDAVVPD 134 (230)
T ss_dssp HHHHHHHHHHHTT-EEEEEEEG
T ss_pred HHHHHHHHHHHCCCcceEEEEc
Confidence 3678999999999999998874
No 345
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=22.23 E-value=23 Score=19.87 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=10.4
Q ss_pred HHHHhhCCCCCEEEEEe
Q 042653 3 KNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 3 ~~~~~al~pggrlli~e 19 (85)
..+.+.| |||+++.+-
T Consensus 36 ~~~~~~l-~~G~~v~i~ 51 (127)
T PF13602_consen 36 DASRKLL-PGGRVVSIG 51 (127)
T ss_dssp GGCCCTE-EEEEEEEE-
T ss_pred HHHHHHC-CCCEEEEEC
Confidence 4455666 999986654
No 346
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=22.23 E-value=1.8e+02 Score=17.32 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=29.0
Q ss_pred CHHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHH---hhcCCCccc-------cCHHHHHHHHHh
Q 042653 1 LLKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLM---MIQSPGGKE-------RTRHEFMTLATA 63 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m---~~~~~~g~~-------rt~~e~~~ll~~ 63 (85)
||.++.+.. +++++-++..-.++.. ..+ .-+++.- +.++.+|+. ++.++|.+++++
T Consensus 57 vleELa~e~-~~~~v~~akVDiD~~~--~LA----~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 57 MIGELLREF-PDYTWQVAIADLEQSE--AIG----DRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred HHHHHHHHh-cCCceEEEEEECCCCH--HHH----HHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHH
Confidence 466777776 4556666655455432 211 1233221 222335544 677888877764
No 347
>PF05051 COX17: Cytochrome C oxidase copper chaperone (COX17); InterPro: IPR007745 Cox17p is essential for the assembly of functional cytochrome c oxidase (CCO) and for delivery of copper ions to the mitochondrion for insertion into the enzyme in Saccharomyces cerevisiae [].; GO: 0005507 copper ion binding, 0016531 copper chaperone activity, 0006825 copper ion transport, 0005758 mitochondrial intermembrane space; PDB: 1U97_A 1U96_A 1Z2G_A 2RNB_A 2RN9_A 2LGQ_A 2L0Y_B.
Probab=22.20 E-value=85 Score=15.56 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCCCccccCHHHHHHHHHhcCCCe
Q 042653 36 SHYDVLMMIQSPGGKERTRHEFMTLATAAGFSG 68 (85)
Q Consensus 36 ~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~ 68 (85)
..-|--|+......-.--.+.+.+-++..||++
T Consensus 17 ~aRDeC~l~~g~e~C~~~Ieahk~Cmr~~GF~v 49 (49)
T PF05051_consen 17 KARDECILFNGEEDCKELIEAHKACMRGEGFKV 49 (49)
T ss_dssp HHHHHHHHHC-CCCCHHHHHHHHHHHHHHTCCS
T ss_pred HHhHhhHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 456666654211222344677888899999974
No 348
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=22.09 E-value=1.3e+02 Score=20.59 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=14.6
Q ss_pred ccccCHHHHHHHHHhcCCCee
Q 042653 49 GKERTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 49 g~~rt~~e~~~ll~~aGf~~~ 69 (85)
|..|+.+|-+++.++-|+...
T Consensus 130 g~~y~~~~a~~~~~~~~~~~~ 150 (310)
T TIGR00746 130 GPFYTEEEAKRLAAEKGWIVK 150 (310)
T ss_pred CCCcCHHHHHHHHHHcCCeEe
Confidence 556788888888877666443
No 349
>PRK04966 hypothetical protein; Provisional
Probab=22.04 E-value=86 Score=16.81 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=14.6
Q ss_pred HHHHhhCCCCCEEEEEee
Q 042653 3 KNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~ 20 (85)
.+|++.|+.|-.+|+++.
T Consensus 40 ~qv~~qL~~G~~viv~se 57 (72)
T PRK04966 40 ADVKRQLQSGEAVLVWSE 57 (72)
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 578889999988888774
No 350
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=21.98 E-value=94 Score=21.10 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=15.1
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
+.++.+.+++||+++.+-.
T Consensus 261 ~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 LGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred HHHHHHHhcCCcEEEEeCC
Confidence 4567788999999998863
No 351
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=21.89 E-value=91 Score=18.53 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.5
Q ss_pred CCccccCHHHHHHHHHhcC
Q 042653 47 PGGKERTRHEFMTLATAAG 65 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aG 65 (85)
-|+.+-|.+||.+|+++..
T Consensus 79 lGd~~Ls~eEf~~L~~~~~ 97 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKR 97 (141)
T ss_pred ECCEECCHHHHHHHHHcCC
Confidence 3899999999999999653
No 352
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=21.81 E-value=92 Score=18.10 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=18.1
Q ss_pred CHHHHHhhCCCCCEEEEEeee
Q 042653 1 LLKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~~ 21 (85)
++++++++++-.|.+..+|.-
T Consensus 39 ~~~~~A~~vkG~gT~~~vdCg 59 (112)
T cd03067 39 LLSDVAQAVKGQGTIAWIDCG 59 (112)
T ss_pred HHHHHHHHhcCceeEEEEecC
Confidence 478899999999999999973
No 353
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=21.77 E-value=32 Score=23.20 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=14.7
Q ss_pred CHHHHHhhCCCCCEEEEEee
Q 042653 1 LLKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 1 iL~~~~~al~pggrlli~e~ 20 (85)
+++++.+.++|||.|+.+-+
T Consensus 220 L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 220 LLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp HHHHHHHTEEEEEEEEEEE-
T ss_pred HHHHHHHhcCCCCEEEEEcC
Confidence 46677888899998876654
No 354
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.71 E-value=1.3e+02 Score=20.18 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=18.4
Q ss_pred ccCHHHHHHHHHhcCCCeeEEE
Q 042653 51 ERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 51 ~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.-+.+|+.+++++|||..+..-
T Consensus 282 ~~~~~~l~~~~~~~g~~~~~r~ 303 (309)
T TIGR00423 282 GLTVEELIEAIKDAGRVPAQRD 303 (309)
T ss_pred CCCHHHHHHHHHHcCCCeeecC
Confidence 3578999999999999987643
No 355
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=21.66 E-value=1.1e+02 Score=22.48 Aligned_cols=64 Identities=9% Similarity=0.070 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCCEEEEEeeecCCCCCCChhhhhHHHHHHHHhhcCCCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 2 LKNCYKSIPEDGKVIVVESMIPEVPNTSIESKLNSHYDVLMMIQSPGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
|-+..+.||+.|.+.|++-.=-... ... ...+...-... ..+.....+|++.|...|..+++++
T Consensus 87 lwRfw~~lP~~G~I~IFdRSWY~~v---lve---rv~g~~~~~~~-~~~~~~I~~FE~~L~~~G~~IlKff 150 (493)
T TIGR03708 87 MWRFWRRLPPKGKIGIFFGSWYTRP---LIE---RLEGRIDEAKL-DSHIEDINRFERMLADDGALILKFW 150 (493)
T ss_pred HHHHHHhCCCCCeEEEEcCcccchh---hHH---HhcCCCCHHHH-HHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5677888999999888874211110 000 01111000000 2233566688889999998888875
No 356
>PRK05398 formyl-coenzyme A transferase; Provisional
Probab=21.60 E-value=1e+02 Score=21.80 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=18.7
Q ss_pred cccCHHHHHHHHHhcCCCeeEEE
Q 042653 50 KERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
..||.+||.++|.++|.-...+.
T Consensus 317 ~~~t~~e~~~~l~~~~vp~~~V~ 339 (416)
T PRK05398 317 MTKTKFEAVDILNAFDIPCGPVL 339 (416)
T ss_pred hcCCHHHHHHHHHHcCcCeeecC
Confidence 35899999999999997765544
No 357
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=21.44 E-value=90 Score=19.52 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=18.2
Q ss_pred CccccCHHHHHHHHHhcCCCeeE
Q 042653 48 GGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
.++.+|.++|.+||++.|=--+.
T Consensus 92 ~~~~~t~e~~~~LL~~yGPLwv~ 114 (166)
T PF12385_consen 92 ANASYTAEGLANLLREYGPLWVA 114 (166)
T ss_pred cccccCHHHHHHHHHHcCCeEEE
Confidence 45789999999999999943333
No 358
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=21.33 E-value=1.1e+02 Score=21.63 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=18.2
Q ss_pred cccCHHHHHHHHHhcCCCeeEEE
Q 042653 50 KERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 50 ~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
..||.+||.++|.++|.....+.
T Consensus 301 ~~~t~~ew~~~l~~~~vp~~pV~ 323 (405)
T PRK03525 301 AAHTIAEVEARFAELNIACAKVL 323 (405)
T ss_pred HhCCHHHHHHHHHHcCCCEEecC
Confidence 34899999999999997654443
No 359
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=21.13 E-value=55 Score=23.70 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCEEEEEeeecC
Q 042653 2 LKNCYKSIPEDGKVIVVESMIP 23 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~~ 23 (85)
|+++++.++..|.|+|.|.|+-
T Consensus 238 l~~vr~iC~ky~ILlI~DEV~t 259 (449)
T COG0161 238 LKRVREICDKYGILLIADEVAT 259 (449)
T ss_pred HHHHHHHHHHcCcEEEeeccee
Confidence 6889999999999999998654
No 360
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=21.05 E-value=83 Score=22.63 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=12.0
Q ss_pred HHHHHhhCCCCCEEEEEe
Q 042653 2 LKNCYKSIPEDGKVIVVE 19 (85)
Q Consensus 2 L~~~~~al~pggrlli~e 19 (85)
++++.+.|+|||.++ +|
T Consensus 364 i~~a~~~LkpgG~li-lE 380 (423)
T PRK14966 364 AQGAPDRLAEGGFLL-LE 380 (423)
T ss_pred HHHHHHhcCCCcEEE-EE
Confidence 456667899999764 44
No 361
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=20.93 E-value=31 Score=22.82 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.1
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
|+.+++-|.|||.|++-|...
T Consensus 195 Le~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 195 LEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHhhcCCCeEEEEeCCCC
Confidence 678888899999777766543
No 362
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.91 E-value=1.4e+02 Score=19.38 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=8.3
Q ss_pred HHHHHHhcCCCeeEE
Q 042653 57 FMTLATAAGFSGISC 71 (85)
Q Consensus 57 ~~~ll~~aGf~~~~~ 71 (85)
+++.++++|+++..+
T Consensus 62 l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 62 LVNALVETGFRVNSM 76 (283)
T ss_pred HHHHHHHcCCceeEE
Confidence 355555666665544
No 363
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=20.80 E-value=2.5e+02 Score=19.03 Aligned_cols=30 Identities=10% Similarity=-0.040 Sum_probs=21.5
Q ss_pred HHHHHHHhcCC----CeeEEEecCCceEEEEEEC
Q 042653 56 EFMTLATAAGF----SGISCERAIGNFWVMEFYK 85 (85)
Q Consensus 56 e~~~ll~~aGf----~~~~~~~~~~~~~~ie~~~ 85 (85)
-+..++++.|. +-.++.+++...++||.++
T Consensus 55 l~~~i~~~~~l~l~l~~Y~vi~~s~~~GlIE~V~ 88 (289)
T cd00893 55 ELQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIP 88 (289)
T ss_pred HHHHHHHHcCCCceeEEEEEEECCCCceeEEEeC
Confidence 34667777764 3466778888899999875
No 364
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=20.79 E-value=76 Score=16.88 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.8
Q ss_pred HHHHhhCCCCCEEEEEee
Q 042653 3 KNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~ 20 (85)
.+|+++|+.|-.+|+++.
T Consensus 40 ~qv~~qL~~G~avI~~se 57 (70)
T PF06794_consen 40 EQVKQQLKSGEAVIVFSE 57 (70)
T ss_dssp HHHHHHHHTTSEEEEE-T
T ss_pred HHHHHHHHcCCEEEEECC
Confidence 578888999988888774
No 365
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.72 E-value=1.1e+02 Score=16.20 Aligned_cols=21 Identities=10% Similarity=0.028 Sum_probs=17.2
Q ss_pred cCHHHHHHHHHhcCCCeeEEE
Q 042653 52 RTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~~~ 72 (85)
-+..+|..++..-||+..++.
T Consensus 9 v~~~~Wk~laR~LGls~~~I~ 29 (79)
T cd08784 9 VPFDQHKRFFRKLGLSDNEIK 29 (79)
T ss_pred CCHHHHHHHHHHcCCCHHHHH
Confidence 477899999999999976553
No 366
>PRK09409 IS2 transposase TnpB; Reviewed
Probab=20.72 E-value=98 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCCccccCHHHHHHHHHhcCCCeeE
Q 042653 46 SPGGKERTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~aGf~~~~ 70 (85)
+++|.+++..+|.+++++.|.+..-
T Consensus 197 SDrGsqy~s~~~~~~l~~~gI~~Sm 221 (301)
T PRK09409 197 TDNGSCYRANETRQFARMLGLEPKN 221 (301)
T ss_pred cCCCcccccHHHHHHHHHcCCeEee
Confidence 6789999999999999999987543
No 367
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.69 E-value=83 Score=17.34 Aligned_cols=22 Identities=9% Similarity=-0.008 Sum_probs=15.5
Q ss_pred CHHHHHHHHHhcCCCeeEEEec
Q 042653 53 TRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 53 t~~e~~~ll~~aGf~~~~~~~~ 74 (85)
..+..+++|+++|....++.+.
T Consensus 31 v~~ni~~~L~~aG~~~~dVv~~ 52 (101)
T cd06155 31 IFSKLREILQSNGLSLSDILYV 52 (101)
T ss_pred HHHHHHHHHHHcCCCHHHEEEE
Confidence 4456678888888887666544
No 368
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=20.62 E-value=1.4e+02 Score=20.99 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEE
Q 042653 48 GGKERTRHEFMTLATAAGFSGISC 71 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~ 71 (85)
+-.....++|.+++++||++-+-+
T Consensus 77 ~p~~fD~~~Wa~~~k~AGakY~vl 100 (384)
T smart00812 77 TAEKFDPEEWADLFKKAGAKYVVL 100 (384)
T ss_pred CchhCCHHHHHHHHHHcCCCeEEe
Confidence 556799999999999999886544
No 369
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=20.59 E-value=1e+02 Score=20.24 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=14.5
Q ss_pred HHHHhhCCCCCEEEEEee
Q 042653 3 KNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 3 ~~~~~al~pggrlli~e~ 20 (85)
....+.++++|+++.+-.
T Consensus 221 ~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 221 NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred HHHHHHhCcCcEEEEecc
Confidence 456788999999998754
No 370
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=20.55 E-value=97 Score=20.84 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCCEEEEEee
Q 042653 2 LKNCYKSIPEDGKVIVVES 20 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~ 20 (85)
++...+++++||+++++-.
T Consensus 259 ~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 259 YKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHHHhccCCEEEEECC
Confidence 3456678899999998864
No 371
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=20.50 E-value=1e+02 Score=19.26 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=13.8
Q ss_pred CCCCCEEEEEeeecCCC
Q 042653 9 IPEDGKVIVVESMIPEV 25 (85)
Q Consensus 9 l~pggrlli~e~~~~~~ 25 (85)
+.+|.+++|+|.+++..
T Consensus 102 l~~G~~VLIVDDIi~TG 118 (187)
T TIGR01367 102 VKPGEKFVAVEDVVTTG 118 (187)
T ss_pred CCCCCEEEEEEeeecch
Confidence 45788999999988765
No 372
>PLN02293 adenine phosphoribosyltransferase
Probab=20.49 E-value=64 Score=20.26 Aligned_cols=17 Identities=12% Similarity=0.487 Sum_probs=11.3
Q ss_pred hCCCCCEEEEEeeecCC
Q 042653 8 SIPEDGKVIVVESMIPE 24 (85)
Q Consensus 8 al~pggrlli~e~~~~~ 24 (85)
.+++|-+++|+|.++..
T Consensus 121 ~i~~G~rVlIVDDvitT 137 (187)
T PLN02293 121 AVEPGERALVIDDLIAT 137 (187)
T ss_pred ccCCCCEEEEEeccccc
Confidence 45667777777776654
No 373
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.42 E-value=1e+02 Score=21.14 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=22.0
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
.+.-+|.+|+++|.+-|--+.++++|.
T Consensus 68 ~~~~YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 68 PGGYYTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 456799999999999887777777765
No 374
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=20.38 E-value=1.1e+02 Score=20.62 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=16.3
Q ss_pred HHHHHhhCCCCCEEEEEeeec
Q 042653 2 LKNCYKSIPEDGKVIVVESMI 22 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~~ 22 (85)
+....++|++||+++++-...
T Consensus 252 ~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 252 AFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred HHHHHHHccCCcEEEEEecCC
Confidence 456678899999999887543
No 375
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=20.31 E-value=89 Score=16.80 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=9.6
Q ss_pred hhCCCCCEEEEEee
Q 042653 7 KSIPEDGKVIVVES 20 (85)
Q Consensus 7 ~al~pggrlli~e~ 20 (85)
+..+++||+++.|.
T Consensus 80 ~~~~~~grfilr~~ 93 (102)
T cd01513 80 SENQEGGRFALRDG 93 (102)
T ss_pred hhCCCcccEEEEeC
Confidence 44567888888664
No 376
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.29 E-value=1.5e+02 Score=19.07 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=12.9
Q ss_pred cCHHHHHHHHHhcCCCeeE
Q 042653 52 RTRHEFMTLATAAGFSGIS 70 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~~ 70 (85)
.+.++.++++++.|+++..
T Consensus 40 ~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 40 YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred CCHHHHHHHHHHcCCcEEE
Confidence 4667777777777777643
No 377
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=20.29 E-value=1e+02 Score=21.43 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=15.9
Q ss_pred HHHHHhhCCCCCEEEEEeee
Q 042653 2 LKNCYKSIPEDGKVIVVESM 21 (85)
Q Consensus 2 L~~~~~al~pggrlli~e~~ 21 (85)
++...+.+++||+++++-..
T Consensus 282 ~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 282 LNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred HHHHHHHhhCCCEEEEeeec
Confidence 45567889999999998754
No 378
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=20.24 E-value=1.1e+02 Score=13.78 Aligned_cols=18 Identities=6% Similarity=0.091 Sum_probs=14.3
Q ss_pred cCHHHHHHHHHhcCCCee
Q 042653 52 RTRHEFMTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~~~ll~~aGf~~~ 69 (85)
-|.++.+++|.+.|....
T Consensus 4 Ws~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 477899999999887653
No 379
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=20.22 E-value=1.6e+02 Score=19.62 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCccccCHHHHHHHHHhcCCCeeEEE
Q 042653 47 PGGKERTRHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 47 ~~g~~rt~~e~~~ll~~aGf~~~~~~ 72 (85)
.+|..||.+..+.+++ +|...+-+-
T Consensus 80 vGGGIRs~~~v~~ll~-~G~~rViiG 104 (241)
T COG0106 80 VGGGIRSLEDVEALLD-AGVARVIIG 104 (241)
T ss_pred eeCCcCCHHHHHHHHH-CCCCEEEEe
Confidence 3888999999999998 888766553
No 380
>PTZ00445 p36-lilke protein; Provisional
Probab=20.14 E-value=2.2e+02 Score=18.64 Aligned_cols=19 Identities=0% Similarity=-0.261 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCeeEEE
Q 042653 54 RHEFMTLATAAGFSGISCE 72 (85)
Q Consensus 54 ~~e~~~ll~~aGf~~~~~~ 72 (85)
..+|..-+.++|+.+.-+.
T Consensus 80 fk~~~~~l~~~~I~v~VVT 98 (219)
T PTZ00445 80 FKILGKRLKNSNIKISVVT 98 (219)
T ss_pred HHHHHHHHHHCCCeEEEEE
Confidence 5567777778899876554
No 381
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.13 E-value=92 Score=20.88 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=22.1
Q ss_pred CccccCHHHHHHHHHhcCCCeeEEEec
Q 042653 48 GGKERTRHEFMTLATAAGFSGISCERA 74 (85)
Q Consensus 48 ~g~~rt~~e~~~ll~~aGf~~~~~~~~ 74 (85)
++..+|.+|++++.+-|--..++++|.
T Consensus 65 ~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 65 PGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 456899999999999887777777765
No 382
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=20.11 E-value=93 Score=23.63 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHhhCCCCCEEEEE
Q 042653 2 LKNCYKSIPEDGKVIVV 18 (85)
Q Consensus 2 L~~~~~al~pggrlli~ 18 (85)
++.+.+.|+|||.+++.
T Consensus 639 ~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 639 IKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHHHHHHcCCCCEEEEE
Confidence 56677889999977654
No 383
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=20.10 E-value=2.5e+02 Score=18.81 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCccccCHHHHHHHHHh
Q 042653 46 SPGGKERTRHEFMTLATA 63 (85)
Q Consensus 46 ~~~g~~rt~~e~~~ll~~ 63 (85)
+.+|..||.++.+.+|..
T Consensus 78 tVGGGI~s~eD~~~ll~a 95 (256)
T COG0107 78 TVGGGIRSVEDARKLLRA 95 (256)
T ss_pred EecCCcCCHHHHHHHHHc
Confidence 568999999999999873
No 384
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=20.05 E-value=1e+02 Score=16.37 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=8.4
Q ss_pred cCHHHH---HHHHHhcCCCee
Q 042653 52 RTRHEF---MTLATAAGFSGI 69 (85)
Q Consensus 52 rt~~e~---~~ll~~aGf~~~ 69 (85)
-|.++. -++|+++||...
T Consensus 48 Lt~eqv~~LN~~l~~~Gf~~~ 68 (73)
T PF14794_consen 48 LTEEQVAKLNQALQKAGFDEE 68 (73)
T ss_dssp --HHHHHHHHHHHHHTT----
T ss_pred cCHHHHHHHHHHHHHcCCCce
Confidence 555544 567889999753
Done!