Query 042654
Match_columns 270
No_of_seqs 129 out of 416
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07250 Glyoxal_oxid_N: Glyox 100.0 1.5E-40 3.3E-45 301.9 13.3 143 19-171 27-243 (243)
2 PHA02713 hypothetical protein; 99.3 3.8E-11 8.3E-16 120.5 15.8 192 32-269 303-544 (557)
3 KOG4441 Proteins containing BT 99.2 6.7E-10 1.5E-14 112.2 17.6 196 33-267 285-508 (571)
4 PHA02790 Kelch-like protein; P 99.2 7.9E-10 1.7E-14 108.9 17.0 186 33-267 272-479 (480)
5 PHA03098 kelch-like protein; P 99.1 1.1E-08 2.4E-13 101.0 18.5 198 33-267 295-520 (534)
6 KOG4441 Proteins containing BT 99.0 8.4E-09 1.8E-13 104.3 17.2 192 32-267 332-555 (571)
7 PHA03098 kelch-like protein; P 99.0 8.4E-09 1.8E-13 101.8 16.4 187 45-267 264-473 (534)
8 TIGR03547 muta_rot_YjhT mutatr 99.0 1.3E-08 2.7E-13 95.1 16.4 208 33-267 18-307 (346)
9 PHA02713 hypothetical protein; 99.0 9.6E-09 2.1E-13 103.3 16.3 192 47-267 274-498 (557)
10 PLN02153 epithiospecifier prot 99.0 7.1E-08 1.5E-12 90.3 19.2 237 4-266 3-292 (341)
11 PHA02790 Kelch-like protein; P 98.9 1.3E-08 2.7E-13 100.5 12.9 149 65-267 273-432 (480)
12 PRK14131 N-acetylneuraminic ac 98.9 1.1E-07 2.3E-12 90.7 17.5 165 77-267 106-329 (376)
13 PLN02193 nitrile-specifier pro 98.7 8E-07 1.7E-11 87.5 19.0 201 33-266 176-418 (470)
14 PF07250 Glyoxal_oxid_N: Glyox 98.7 2.4E-07 5.2E-12 84.8 12.4 137 77-257 46-199 (243)
15 TIGR03547 muta_rot_YjhT mutatr 98.6 2.6E-06 5.7E-11 79.6 15.9 139 77-234 168-332 (346)
16 PRK14131 N-acetylneuraminic ac 98.5 6E-06 1.3E-10 78.7 16.9 159 77-257 189-370 (376)
17 TIGR03548 mutarot_permut cycli 98.4 1.4E-05 2.9E-10 74.3 15.7 185 32-233 72-313 (323)
18 TIGR03548 mutarot_permut cycli 98.3 2.8E-05 6E-10 72.2 14.8 164 63-267 13-203 (323)
19 PLN02153 epithiospecifier prot 98.2 3.9E-05 8.4E-10 71.9 14.5 148 89-267 6-176 (341)
20 PLN02193 nitrile-specifier pro 98.1 8.1E-05 1.8E-09 73.4 15.5 153 79-267 139-311 (470)
21 COG3055 Uncharacterized protei 97.3 0.0073 1.6E-07 58.4 14.0 199 19-235 78-361 (381)
22 PF13418 Kelch_4: Galactose ox 97.2 0.00036 7.9E-09 47.4 2.8 46 212-267 1-46 (49)
23 KOG0379 Kelch repeat-containin 96.9 0.015 3.2E-07 58.1 12.8 170 32-234 70-286 (482)
24 PF07646 Kelch_2: Kelch motif; 96.3 0.0076 1.6E-07 41.2 4.6 47 214-268 2-48 (49)
25 PF13964 Kelch_6: Kelch motif 96.2 0.0097 2.1E-07 40.6 4.7 45 212-267 1-45 (50)
26 PF13418 Kelch_4: Galactose ox 93.5 0.044 9.5E-07 37.0 1.6 22 102-125 1-22 (49)
27 KOG4693 Uncharacterized conser 93.4 0.38 8.2E-06 45.7 8.0 187 23-233 85-312 (392)
28 PF01344 Kelch_1: Kelch motif; 93.0 0.11 2.5E-06 34.4 3.0 45 212-267 1-45 (47)
29 PF13415 Kelch_3: Galactose ox 91.9 0.37 7.9E-06 32.7 4.5 46 164-220 2-48 (49)
30 smart00612 Kelch Kelch domain. 91.2 0.36 7.8E-06 31.1 3.7 44 165-221 1-45 (47)
31 PF13964 Kelch_6: Kelch motif 90.9 0.48 1E-05 32.1 4.2 39 163-213 11-50 (50)
32 KOG4693 Uncharacterized conser 89.1 6.7 0.00015 37.5 11.6 90 163-268 191-286 (392)
33 KOG0379 Kelch repeat-containin 86.8 5.2 0.00011 40.0 10.0 133 99-266 57-206 (482)
34 smart00612 Kelch Kelch domain. 86.1 0.81 1.8E-05 29.4 2.7 33 76-112 14-46 (47)
35 KOG0278 Serine/threonine kinas 84.3 2.5 5.4E-05 39.9 5.9 107 49-174 126-246 (334)
36 KOG0303 Actin-binding protein 84.2 3.8 8.2E-05 40.6 7.4 120 44-173 153-285 (472)
37 PF07646 Kelch_2: Kelch motif; 75.6 2.1 4.4E-05 28.9 1.8 19 104-124 2-20 (49)
38 PF01344 Kelch_1: Kelch motif; 71.6 2.8 6.1E-05 27.5 1.7 31 102-135 1-36 (47)
39 PF13854 Kelch_5: Kelch motif 70.2 4.4 9.6E-05 26.7 2.4 24 209-233 1-24 (42)
40 TIGR02608 delta_60_rpt delta-6 62.8 10 0.00023 27.2 3.3 41 216-262 4-44 (55)
41 PLN02772 guanylate kinase 59.4 23 0.00051 35.1 6.1 58 163-233 34-96 (398)
42 KOG1230 Protein containing rep 54.2 1.2E+02 0.0026 30.8 9.9 125 89-234 107-253 (521)
43 TIGR02608 delta_60_rpt delta-6 47.2 14 0.00031 26.5 1.8 16 107-124 5-20 (55)
44 KOG1230 Protein containing rep 43.3 57 0.0012 33.0 5.9 61 200-268 106-172 (521)
45 PF14269 Arylsulfotran_2: Aryl 38.0 2.3E+02 0.0049 26.6 8.9 117 97-233 156-280 (299)
46 PLN02772 guanylate kinase 34.6 51 0.0011 32.7 4.1 58 62-124 33-95 (398)
47 smart00155 PLDc Phospholipase 31.0 42 0.00091 20.1 1.9 22 212-233 2-23 (28)
48 KOG0677 Actin-related protein 31.0 43 0.00094 32.0 2.8 41 211-257 233-273 (389)
49 COG3055 Uncharacterized protei 30.7 52 0.0011 32.4 3.3 64 194-266 62-129 (381)
50 PF06627 DUF1153: Protein of u 30.0 33 0.00072 27.2 1.6 15 215-229 8-22 (90)
51 PF07433 DUF1513: Protein of u 25.0 46 0.001 31.9 1.9 42 192-233 76-120 (305)
52 KOG0639 Transducin-like enhanc 24.7 1.2E+02 0.0026 31.5 4.8 55 190-257 439-497 (705)
53 KOG0313 Microtubule binding pr 24.0 3.1E+02 0.0067 27.4 7.3 110 49-173 285-409 (423)
54 PF13540 RCC1_2: Regulator of 23.0 63 0.0014 19.8 1.6 18 104-123 8-25 (30)
55 KOG0271 Notchless-like WD40 re 22.8 2E+02 0.0043 28.9 5.8 75 8-87 105-189 (480)
56 COG4257 Vgb Streptogramin lyas 21.3 7.7E+02 0.017 24.0 13.3 107 19-134 59-185 (353)
57 cd03737 SOCS_SOCS3 SOCS (suppr 20.5 28 0.0006 23.8 -0.4 11 2-12 2-12 (42)
No 1
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=100.00 E-value=1.5e-40 Score=301.86 Aligned_cols=143 Identities=38% Similarity=0.702 Sum_probs=128.2
Q ss_pred CCCCCcCCCCCCcCCCceEeecCCCeeeeEEEeCCCCceEecCCCCCcccCCCeecC-------------CCcEEEecCC
Q 042654 19 SPQHCHNATSPIQWNKPSVFEDWSCYAHFVEYNILGNKIRPLRFDTDSWCSSVVDMA-------------SRRIRYFRPC 85 (270)
Q Consensus 19 ~~~~~~~~~~~~~~gkv~~~~~~~~~a~a~~yDp~T~t~~pl~v~td~FCsgg~~L~-------------~~~~r~ydP~ 85 (270)
+.|+||+.+. ....++||+||+++|||.||++||+.+.+|+|||||++|+ .+++|+|+||
T Consensus 27 ~~~~c~~~~~-------~~~~~~d~~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~ 99 (243)
T PF07250_consen 27 PDGRCRDNPE-------DNALKFDGPAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPC 99 (243)
T ss_pred CCCccccCcc-------ccccccCceEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecC
Confidence 5688999887 5567899999999999999999999999999999999999 6889999999
Q ss_pred C-CCCCceeeccccccccccccceeecCCCCCcEEEEcCCCCceeEeccC------------CCCCCC------------
Q 042654 86 E-NGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRGSFIYEFVPK------------LSSSSS------------ 140 (270)
Q Consensus 86 ~-~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~~t~E~~pp------------L~~T~d------------ 140 (270)
. +++|+|.|.++.|+.+|||||+++|+| ||||||||+.++++||||+ |..+.+
T Consensus 100 ~~~~~~~w~e~~~~m~~~RWYpT~~~L~D--G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 100 TSDGTCDWTESPNDMQSGRWYPTATTLPD--GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred CCCCCCCceECcccccCCCccccceECCC--CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence 7 568999998878999999999999999 9999999999999999997 111110
Q ss_pred ----------------------------------CCCCCCCCceecccC--CcCCCCceeEEEEEcC
Q 042654 141 ----------------------------------DKNCPSSGSSVLLCL--DHSNNFRKVKVMVCGG 171 (270)
Q Consensus 141 ----------------------------------~R~yp~sg~svmLPl--~~~~~y~~~~VLv~GG 171 (270)
+|+||++|++||||| +++++ ++.|||||||
T Consensus 178 lPdG~lFi~an~~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl~~~~~~~-~~~evlvCGG 243 (243)
T PF07250_consen 178 LPDGNLFIFANRGSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPLTDTPPNN-YTAEVLVCGG 243 (243)
T ss_pred cCCCCEEEEEcCCcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecCccCCCCC-CCeEEEEeCC
Confidence 789999999999999 77665 7999999998
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.32 E-value=3.8e-11 Score=120.50 Aligned_cols=192 Identities=12% Similarity=0.080 Sum_probs=127.5
Q ss_pred CCCceEeecCC----CeeeeEEEeCCCCceEecCCCC-------------CcccCCCeecC--CCcEEEecCCCCCCCce
Q 042654 32 WNKPSVFEDWS----CYAHFVEYNILGNKIRPLRFDT-------------DSWCSSVVDMA--SRRIRYFRPCENGHYNW 92 (270)
Q Consensus 32 ~gkv~~~~~~~----~~a~a~~yDp~T~t~~pl~v~t-------------d~FCsgg~~L~--~~~~r~ydP~~~~~~~W 92 (270)
-|++-++|+.+ .......|||.+++|+.+.-.. .++.-||..-. .+.++.|||. +.+|
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~---~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMG---DDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECC---CCeE
Confidence 35566677653 1345678999999998876311 12222332111 3568999998 5789
Q ss_pred eeccccccccccccceeecCCCCCcEEEEcCCC----------------------CceeEeccCCCCCC-------CCCC
Q 042654 93 KQLKWLLSDARWYASNQILPAANDRVILVGGRG----------------------SFIYEFVPKLSSSS-------SDKN 143 (270)
Q Consensus 93 ~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~----------------------~~t~E~~ppL~~T~-------d~R~ 143 (270)
...+ .|..+|-++.++.+ | |+|.|+||.+ ..+.|.|+|..++- .+|.
T Consensus 380 ~~~~-~mp~~r~~~~~~~~-~--g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~ 455 (557)
T PHA02713 380 KMLP-DMPIALSSYGMCVL-D--QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI 455 (557)
T ss_pred EECC-CCCcccccccEEEE-C--CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc
Confidence 8755 59999999988877 6 7999999974 24578898843311 0222
Q ss_pred CCCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCC-Cceeec-CCCCCcccCceeec
Q 042654 144 CPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNK-HVWKME-HMPEPRLLNNMLIL 221 (270)
Q Consensus 144 yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~-~~W~~e-~Mp~~R~m~~~vlL 221 (270)
.+ +++. ..++|.|+||..... .-.+.+.+-++ .. .+|+.. +|+.+|..+.++++
T Consensus 456 ~~---~~~~---------~~~~IYv~GG~~~~~----------~~~~~ve~Ydp--~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 456 RP---GVVS---------HKDDIYVVCDIKDEK----------NVKTCIFRYNT--NTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred cC---cEEE---------ECCEEEEEeCCCCCC----------ccceeEEEecC--CCCCCeeEccccCcccccceeEEE
Confidence 21 1221 247999999965211 01112233332 23 589965 99999999998888
Q ss_pred CCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeecccCC
Q 042654 222 PTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLHKN 269 (270)
Q Consensus 222 PDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~~~ 269 (270)
+|+|.++||.. | + -.-|.|||.++ +|+.++|..
T Consensus 512 -~~~iyv~Gg~~-~---~-------~~~e~yd~~~~---~W~~~~~~~ 544 (557)
T PHA02713 512 -DNTIMMLHCYE-S---Y-------MLQDTFNVYTY---EWNHICHQH 544 (557)
T ss_pred -CCEEEEEeeec-c---e-------eehhhcCcccc---cccchhhhc
Confidence 99999999964 2 1 15789999999 999998864
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.20 E-value=6.7e-10 Score=112.18 Aligned_cols=196 Identities=16% Similarity=0.187 Sum_probs=133.8
Q ss_pred CCceEeecCCC----eeeeEEEeCCCCceEecCCCCC-------------cccCCCeec---CCCcEEEecCCCCCCCce
Q 042654 33 NKPSVFEDWSC----YAHFVEYNILGNKIRPLRFDTD-------------SWCSSVVDM---ASRRIRYFRPCENGHYNW 92 (270)
Q Consensus 33 gkv~~~~~~~~----~a~a~~yDp~T~t~~pl~v~td-------------~FCsgg~~L---~~~~~r~ydP~~~~~~~W 92 (270)
++.-++++... ......|||.+++|..+.-... +|=.||.-. ..+.+..|||. +++|
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~---~~~W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPR---TNQW 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCC---CCce
Confidence 45566777653 5677899999999998864322 444444442 25778999998 5679
Q ss_pred eeccccccccccccceeecCCCCCcEEEEcCCCC----ceeEeccCCCCCCC---CCCCCCCCceecccCCcCCCCceeE
Q 042654 93 KQLKWLLSDARWYASNQILPAANDRVILVGGRGS----FIYEFVPKLSSSSS---DKNCPSSGSSVLLCLDHSNNFRKVK 165 (270)
Q Consensus 93 ~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~----~t~E~~ppL~~T~d---~R~yp~sg~svmLPl~~~~~y~~~~ 165 (270)
+.. ++|+.+|+....+.|-+ .|.++||++. .+.|-|+|-...-- +=..+.++.+|-- .+++
T Consensus 362 ~~~-a~M~~~R~~~~v~~l~g---~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--------~~g~ 429 (571)
T KOG4441|consen 362 TPV-APMNTKRSDFGVAVLDG---KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--------LGGK 429 (571)
T ss_pred ecc-CCccCccccceeEEECC---EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--------ECCE
Confidence 974 46999999999999955 9999999963 46899998322100 0001222222211 3689
Q ss_pred EEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCccCCCC
Q 042654 166 VMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAAS 244 (270)
Q Consensus 166 VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~ 244 (270)
|.++||..... .-.+++.+-+ .....|+.. +|+.+|..+-+..| +|++.++||..- .+
T Consensus 430 iYi~GG~~~~~----------~~l~sve~YD--P~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~--------~~ 488 (571)
T KOG4441|consen 430 LYIIGGGDGSS----------NCLNSVECYD--PETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDG--------TS 488 (571)
T ss_pred EEEEcCcCCCc----------cccceEEEEc--CCCCceeecCCcccccccceEEEE-CCEEEEECCccC--------CC
Confidence 99999975321 0233333333 346799976 99999998886555 899999999751 22
Q ss_pred CCccceeecCCCCCCCceeeccc
Q 042654 245 LSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 245 Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
...+-|.|||.++ .|+.+++
T Consensus 489 ~~~~VE~ydp~~~---~W~~v~~ 508 (571)
T KOG4441|consen 489 ALSSVERYDPETN---QWTMVAP 508 (571)
T ss_pred ccceEEEEcCCCC---ceeEccc
Confidence 3345799999999 9998864
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.18 E-value=7.9e-10 Score=108.94 Aligned_cols=186 Identities=14% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCceEeecCCC---eeeeEEEeCCCCceEecCCCC-------------CcccCCCeecCCCcEEEecCCCCCCCceeecc
Q 042654 33 NKPSVFEDWSC---YAHFVEYNILGNKIRPLRFDT-------------DSWCSSVVDMASRRIRYFRPCENGHYNWKQLK 96 (270)
Q Consensus 33 gkv~~~~~~~~---~a~a~~yDp~T~t~~pl~v~t-------------d~FCsgg~~L~~~~~r~ydP~~~~~~~W~~~~ 96 (270)
+++-++|+.+. ......|||.+++|..+.... .++..||.- ....+..|+|. +++|...+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~---~n~W~~~~ 347 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP-NPTSVERWFHG---DAAWVNMP 347 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC-CCCceEEEECC---CCeEEECC
Confidence 45566776542 345668999999999886321 122222211 13568889997 57898755
Q ss_pred ccccccccccceeecCCCCCcEEEEcCCCC--ceeEeccCCCCCC---CCCCCCCCCceecccCCcCCCCceeEEEEEcC
Q 042654 97 WLLSDARWYASNQILPAANDRVILVGGRGS--FIYEFVPKLSSSS---SDKNCPSSGSSVLLCLDHSNNFRKVKVMVCGG 171 (270)
Q Consensus 97 ~~M~~~RWYpT~~tL~D~~GrVliiGG~~~--~t~E~~ppL~~T~---d~R~yp~sg~svmLPl~~~~~y~~~~VLv~GG 171 (270)
.|..+|-.+.++.+ | |+|.|+||.+. .+.|.|+|-.++- ++-..|..+.++. - ..++|.|+||
T Consensus 348 -~l~~~r~~~~~~~~-~--g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~-------~~~~IYv~GG 415 (480)
T PHA02790 348 -SLLKPRCNPAVASI-N--NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-V-------FGRRLFLVGR 415 (480)
T ss_pred -CCCCCCcccEEEEE-C--CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-E-------ECCEEEEECC
Confidence 59999998888877 6 79999999742 4678888732210 0111222222221 1 2479999998
Q ss_pred CCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCccCCCCCCccce
Q 042654 172 AAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPY 250 (270)
Q Consensus 172 ~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pe 250 (270)
.. .+.+ ....+|+.. +|+.+|..+.++++ +|++.|+||...+ .+ .-+-|
T Consensus 416 ~~-------------------e~yd--p~~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~--~~------~~~ve 465 (480)
T PHA02790 416 NA-------------------EFYC--ESSNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRG--SY------IDTIE 465 (480)
T ss_pred ce-------------------EEec--CCCCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCC--cc------cceEE
Confidence 42 1112 235689965 99999999987776 8999999997521 11 12568
Q ss_pred eecCCCCCCCceeeccc
Q 042654 251 LYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 251 lYdP~~~~G~rft~~~~ 267 (270)
.|||.++ +|+.+-.
T Consensus 466 ~Yd~~~~---~W~~~~~ 479 (480)
T PHA02790 466 VYNNRTY---SWNIWDG 479 (480)
T ss_pred EEECCCC---eEEecCC
Confidence 9999999 9998754
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.05 E-value=1.1e-08 Score=100.97 Aligned_cols=198 Identities=13% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCceEeecCCC----eeeeEEEeCCCCceEecCCC-------------CCcccCCCeecC--CCcEEEecCCCCCCCcee
Q 042654 33 NKPSVFEDWSC----YAHFVEYNILGNKIRPLRFD-------------TDSWCSSVVDMA--SRRIRYFRPCENGHYNWK 93 (270)
Q Consensus 33 gkv~~~~~~~~----~a~a~~yDp~T~t~~pl~v~-------------td~FCsgg~~L~--~~~~r~ydP~~~~~~~W~ 93 (270)
+++-++|+.+. ......||+.+++|+.+... ..++.-||.... ...+..|||. +.+|+
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~---~~~W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPG---ESKWR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCC---CCcee
Confidence 45566666542 23567899999999887631 122222332111 4568889997 57898
Q ss_pred eccccccccccccceeecCCCCCcEEEEcCCC-----CceeEeccCCCCCCC---CCCCCCCCceecccCCcCCCCceeE
Q 042654 94 QLKWLLSDARWYASNQILPAANDRVILVGGRG-----SFIYEFVPKLSSSSS---DKNCPSSGSSVLLCLDHSNNFRKVK 165 (270)
Q Consensus 94 ~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~-----~~t~E~~ppL~~T~d---~R~yp~sg~svmLPl~~~~~y~~~~ 165 (270)
..+ .|..+|-.++++.+ + |+|+|+||.. ....|.|++-..+-. +-..+..+.++.. ..++
T Consensus 372 ~~~-~lp~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~--------~~~~ 439 (534)
T PHA03098 372 EEP-PLIFPRYNPCVVNV-N--NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY--------HDGK 439 (534)
T ss_pred eCC-CcCcCCccceEEEE-C--CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE--------ECCE
Confidence 654 58899988877665 6 6999999962 246788887322110 0011122222211 2579
Q ss_pred EEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCccCCCC
Q 042654 166 VMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAAS 244 (270)
Q Consensus 166 VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~ 244 (270)
|.|+||.+.... ....+.+.+. +....+|+.. .|+.+|..+.++++ +|+++|+||.... .+
T Consensus 440 iyv~GG~~~~~~--------~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~--~~----- 501 (534)
T PHA03098 440 IYVIGGISYIDN--------IKVYNIVESY--NPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYE--YY----- 501 (534)
T ss_pred EEEECCccCCCC--------CcccceEEEe--cCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCC--cc-----
Confidence 999999653110 0011222222 3345789976 89999999888877 9999999998631 11
Q ss_pred CCccceeecCCCCCCCceeeccc
Q 042654 245 LSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 245 Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
.-.-+.|||+++ +|+.+..
T Consensus 502 -~~~v~~yd~~~~---~W~~~~~ 520 (534)
T PHA03098 502 -INEIEVYDDKTN---TWTLFCK 520 (534)
T ss_pred -cceeEEEeCCCC---EEEecCC
Confidence 124689999999 9987643
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.04 E-value=8.4e-09 Score=104.28 Aligned_cols=192 Identities=16% Similarity=0.227 Sum_probs=130.9
Q ss_pred CCCceEeecCC----CeeeeEEEeCCCCceEecCCCCCccc-CCCeecC--------------CCcEEEecCCCCCCCce
Q 042654 32 WNKPSVFEDWS----CYAHFVEYNILGNKIRPLRFDTDSWC-SSVVDMA--------------SRRIRYFRPCENGHYNW 92 (270)
Q Consensus 32 ~gkv~~~~~~~----~~a~a~~yDp~T~t~~pl~v~td~FC-sgg~~L~--------------~~~~r~ydP~~~~~~~W 92 (270)
.|++=++|+++ .....+.|||.+|+|+.+.-...--| .|.+++. .++++.|||. ++.|
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~---~~~W 408 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPV---TNKW 408 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCC---CCcc
Confidence 36778888888 46789999999999999763222111 1222222 6789999998 6789
Q ss_pred eeccccccccccccceeecCCCCCcEEEEcCCC-----CceeEeccCCCCCC-------CCCCCCCCCceecccCCcCCC
Q 042654 93 KQLKWLLSDARWYASNQILPAANDRVILVGGRG-----SFIYEFVPKLSSSS-------SDKNCPSSGSSVLLCLDHSNN 160 (270)
Q Consensus 93 ~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~-----~~t~E~~ppL~~T~-------d~R~yp~sg~svmLPl~~~~~ 160 (270)
.. ...|..+|.-+.++.+ + |+|.|+||.+ ..+.|.|+|...+- .+|.+- | .+.
T Consensus 409 ~~-va~m~~~r~~~gv~~~-~--g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~--g-~a~-------- 473 (571)
T KOG4441|consen 409 TP-VAPMLTRRSGHGVAVL-G--GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF--G-VAV-------- 473 (571)
T ss_pred cc-cCCCCcceeeeEEEEE-C--CEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc--e-EEE--------
Confidence 85 4458888888877777 5 6999999974 25789999844321 134332 1 122
Q ss_pred CceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCc
Q 042654 161 FRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGW 239 (270)
Q Consensus 161 y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~ 239 (270)
.+++|.++||.+.. -+..++++.++ ...+|+.- +|..+|...-.++ =+|++.++||-. |.
T Consensus 474 -~~~~iYvvGG~~~~-----------~~~~~VE~ydp--~~~~W~~v~~m~~~rs~~g~~~-~~~~ly~vGG~~-~~--- 534 (571)
T KOG4441|consen 474 -LNGKIYVVGGFDGT-----------SALSSVERYDP--ETNQWTMVAPMTSPRSAVGVVV-LGGKLYAVGGFD-GN--- 534 (571)
T ss_pred -ECCEEEEECCccCC-----------CccceEEEEcC--CCCceeEcccCccccccccEEE-ECCEEEEEeccc-Cc---
Confidence 35799999997631 12333444443 35799976 8999998876554 489999999942 21
Q ss_pred cCCCCCCccceeecCCCCCCCceeeccc
Q 042654 240 NNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 240 ~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
.=.-+=|.|||.++ +|+...+
T Consensus 535 ----~~l~~ve~ydp~~d---~W~~~~~ 555 (571)
T KOG4441|consen 535 ----NNLNTVECYDPETD---TWTEVTE 555 (571)
T ss_pred ----cccceeEEcCCCCC---ceeeCCC
Confidence 11235689999999 9998764
No 7
>PHA03098 kelch-like protein; Provisional
Probab=99.03 E-value=8.4e-09 Score=101.77 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=118.4
Q ss_pred eeeEEEeCCCCceEecCCC------------CCcccCCCeecC---CCcEEEecCCCCCCCceeecccccccccccccee
Q 042654 45 AHFVEYNILGNKIRPLRFD------------TDSWCSSVVDMA---SRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQ 109 (270)
Q Consensus 45 a~a~~yDp~T~t~~pl~v~------------td~FCsgg~~L~---~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~ 109 (270)
.....|++.+++|.++.-. ..+|+-||..-. .+.+..||+. +.+|.+.+ .|..+|-+++++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~---~~~W~~~~-~~~~~R~~~~~~ 339 (534)
T PHA03098 264 YNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTK---TKSWNKVP-ELIYPRKNPGVT 339 (534)
T ss_pred ceeeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCC---CCeeeECC-CCCcccccceEE
Confidence 3455688888888776422 223333433211 3467889987 67898765 588999999988
Q ss_pred ecCCCCCcEEEEcCCC----CceeEeccCCCCCCC---CCCCCCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcc
Q 042654 110 ILPAANDRVILVGGRG----SFIYEFVPKLSSSSS---DKNCPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQ 182 (270)
Q Consensus 110 tL~D~~GrVliiGG~~----~~t~E~~ppL~~T~d---~R~yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~ 182 (270)
.+ + |+|+|+||.+ ..+.|.|++...+-. +-..|..+.++.. ..++|.|+||...+.
T Consensus 340 ~~-~--~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~--------~~~~iYv~GG~~~~~------ 402 (534)
T PHA03098 340 VF-N--NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN--------VNNLIYVIGGISKND------ 402 (534)
T ss_pred EE-C--CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE--------ECCEEEEECCcCCCC------
Confidence 77 6 7999999985 345788887332110 0012222222211 246999999964321
Q ss_pred cccccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCc
Q 042654 183 GRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKV 261 (270)
Q Consensus 183 ~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~r 261 (270)
..+++..+.++ ...+|+.- +||.+|..+.++.+ +|+++|+||..... .....-.-+.|||.++ +
T Consensus 403 ----~~~~~v~~yd~--~t~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-----~~~~~~~v~~yd~~~~---~ 467 (534)
T PHA03098 403 ----ELLKTVECFSL--NTNKWSKGSPLPISHYGGCAIYH-DGKIYVIGGISYID-----NIKVYNIVESYNPVTN---K 467 (534)
T ss_pred ----cccceEEEEeC--CCCeeeecCCCCccccCceEEEE-CCEEEEECCccCCC-----CCcccceEEEecCCCC---c
Confidence 11344444543 35789965 99999998877665 88999999975211 0011123689999999 9
Q ss_pred eeeccc
Q 042654 262 FSSSLH 267 (270)
Q Consensus 262 ft~~~~ 267 (270)
|+++.+
T Consensus 468 W~~~~~ 473 (534)
T PHA03098 468 WTELSS 473 (534)
T ss_pred eeeCCC
Confidence 998864
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.02 E-value=1.3e-08 Score=95.12 Aligned_cols=208 Identities=13% Similarity=0.151 Sum_probs=116.5
Q ss_pred CCceEeecCCCeeeeEEEeC--CCCceEecCCCC--------------CcccCCCeec--------CCCcEEEecCCCCC
Q 042654 33 NKPSVFEDWSCYAHFVEYNI--LGNKIRPLRFDT--------------DSWCSSVVDM--------ASRRIRYFRPCENG 88 (270)
Q Consensus 33 gkv~~~~~~~~~a~a~~yDp--~T~t~~pl~v~t--------------d~FCsgg~~L--------~~~~~r~ydP~~~~ 88 (270)
+++-++++... .....||+ .+++|+.+.-.. .++-.||... ....+..|||.
T Consensus 18 ~~vyv~GG~~~-~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~--- 93 (346)
T TIGR03547 18 DKVYVGLGSAG-TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK--- 93 (346)
T ss_pred CEEEEEccccC-CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC---
Confidence 45666666543 34457886 567888765321 1222222210 02357789998
Q ss_pred CCceeeccccccccccccceeecCCCCCcEEEEcCCCC--------------------------------------ceeE
Q 042654 89 HYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRGS--------------------------------------FIYE 130 (270)
Q Consensus 89 ~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~--------------------------------------~t~E 130 (270)
++.|++.+..|...|.-++...+-+ |+|.|+||.+. ...|
T Consensus 94 ~~~W~~~~~~~p~~~~~~~~~~~~~--g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (346)
T TIGR03547 94 KNSWQKLDTRSPVGLLGASGFSLHN--GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVL 171 (346)
T ss_pred CCEEecCCCCCCCcccceeEEEEeC--CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEE
Confidence 6789875433555665566655678 99999999741 4678
Q ss_pred eccCCCCCCC---CCCC-CCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceee
Q 042654 131 FVPKLSSSSS---DKNC-PSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKM 206 (270)
Q Consensus 131 ~~ppL~~T~d---~R~y-p~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~ 206 (270)
.|+|...+-. +-.. +..+.++.. ...+|.|+||...... .+..+...+++.....|+.
T Consensus 172 ~YDp~t~~W~~~~~~p~~~r~~~~~~~--------~~~~iyv~GG~~~~~~----------~~~~~~~y~~~~~~~~W~~ 233 (346)
T TIGR03547 172 SYDPSTNQWRNLGENPFLGTAGSAIVH--------KGNKLLLINGEIKPGL----------RTAEVKQYLFTGGKLEWNK 233 (346)
T ss_pred EEECCCCceeECccCCCCcCCCceEEE--------ECCEEEEEeeeeCCCc----------cchheEEEEecCCCceeee
Confidence 8887433110 0001 112222211 2469999999642110 1112223445445578986
Q ss_pred c-CCCCCccc------CceeecCCccEEEEcCcccc-CC-----C--ccC-CCCCCccceeecCCCCCCCceeeccc
Q 042654 207 E-HMPEPRLL------NNMLILPTGHILIINGAKRG-SA-----G--WNN-AASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 207 e-~Mp~~R~m------~~~vlLPDG~Vli~gGa~~G-~a-----G--~~~-a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
. .|+.+|.. +-++..-+|+|+|+||...- .. | +.. .......-|+|||+++ +|+.+.+
T Consensus 234 ~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~---~W~~~~~ 307 (346)
T TIGR03547 234 LPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG---KWSKVGK 307 (346)
T ss_pred cCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC---cccccCC
Confidence 5 99987731 11134459999999997521 00 0 000 0111235799999988 9988754
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.01 E-value=9.6e-09 Score=103.30 Aligned_cols=192 Identities=10% Similarity=0.086 Sum_probs=118.7
Q ss_pred eEEEeCCCCceEecCC-------------CCCcccCCCeec---CCCcEEEecCCCCCCCceeeccccccccccccceee
Q 042654 47 FVEYNILGNKIRPLRF-------------DTDSWCSSVVDM---ASRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQI 110 (270)
Q Consensus 47 a~~yDp~T~t~~pl~v-------------~td~FCsgg~~L---~~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~t 110 (270)
...|||.+++|+.+.. ...++..||... ..+.+..|||. ++.|.+.+ .|..+|.+++++.
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~---~n~W~~~~-~m~~~R~~~~~~~ 349 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIE---NKIHVELP-PMIKNRCRFSLAV 349 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECC---CCeEeeCC-CCcchhhceeEEE
Confidence 4679999999987642 123445555321 14568889998 56898765 5999999998887
Q ss_pred cCCCCCcEEEEcCCC----CceeEeccCCCCCCC---CCCCCCCCc-eecccCCcCCCCceeEEEEEcCCCCCc-hhhh-
Q 042654 111 LPAANDRVILVGGRG----SFIYEFVPKLSSSSS---DKNCPSSGS-SVLLCLDHSNNFRKVKVMVCGGAAAGA-YRVA- 180 (270)
Q Consensus 111 L~D~~GrVliiGG~~----~~t~E~~ppL~~T~d---~R~yp~sg~-svmLPl~~~~~y~~~~VLv~GG~~~~~-~~~~- 180 (270)
+ | |+|.|+||.+ ..+.|.|+|...+-. +-..|.++. ++. .+++|.++||..... +...
T Consensus 350 ~-~--g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~---------~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 350 I-D--DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV---------LDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred E-C--CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE---------ECCEEEEEeCCCccccccccc
Confidence 7 5 6999999984 246899988432110 001111122 221 257999999975210 0000
Q ss_pred -ccccc----ccCCCceeEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecC
Q 042654 181 -AQGRF----LKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKP 254 (270)
Q Consensus 181 -~~~~~----~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP 254 (270)
.+.+. ...++++.+-+ ....+|+.. +|+.+|..+.++.+ +|++.|+||.. +..+. .-.-|.|||
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YD--P~td~W~~v~~m~~~r~~~~~~~~-~~~IYv~GG~~-~~~~~------~~~ve~Ydp 487 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYD--TVNNIWETLPNFWTGTIRPGVVSH-KDDIYVVCDIK-DEKNV------KTCIFRYNT 487 (557)
T ss_pred ccccccccccccccceEEEEC--CCCCeEeecCCCCcccccCcEEEE-CCEEEEEeCCC-CCCcc------ceeEEEecC
Confidence 00000 01133333333 235789965 99999998876655 68999999864 11110 112479999
Q ss_pred CC-CCCCceeeccc
Q 042654 255 RK-TLGKVFSSSLH 267 (270)
Q Consensus 255 ~~-~~G~rft~~~~ 267 (270)
.+ + +|+.+++
T Consensus 488 ~~~~---~W~~~~~ 498 (557)
T PHA02713 488 NTYN---GWELITT 498 (557)
T ss_pred CCCC---CeeEccc
Confidence 99 8 9998765
No 10
>PLN02153 epithiospecifier protein
Probab=98.96 E-value=7.1e-08 Score=90.29 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=131.3
Q ss_pred Cccccccccccc--C-CCCCCCCcCCCCCCcCCCceEeecCCC-----eeeeEEEeCCCCceEecCCCCC---cccCCCe
Q 042654 4 PSQQHRCRSHAY--G-INSPQHCHNATSPIQWNKPSVFEDWSC-----YAHFVEYNILGNKIRPLRFDTD---SWCSSVV 72 (270)
Q Consensus 4 ~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~gkv~~~~~~~~-----~a~a~~yDp~T~t~~pl~v~td---~FCsgg~ 72 (270)
|.+|-+++.-.. | +-+|-.++- -...-+++-++++.+. .....+||+.+++|+.+..... ..|.+++
T Consensus 3 ~~~~~~W~~~~~~~~~~P~pR~~h~--~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~ 80 (341)
T PLN02153 3 PTLQGGWIKVEQKGGKGPGPRCSHG--IAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVR 80 (341)
T ss_pred CccCCeEEEecCCCCCCCCCCCcce--EEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceE
Confidence 556666664333 1 223433332 2223466777777642 2356789999999998764221 1333433
Q ss_pred ecC----------------CCcEEEecCCCCCCCceeeccccc-----cccccccceeecCCCCCcEEEEcCCCC-----
Q 042654 73 DMA----------------SRRIRYFRPCENGHYNWKQLKWLL-----SDARWYASNQILPAANDRVILVGGRGS----- 126 (270)
Q Consensus 73 ~L~----------------~~~~r~ydP~~~~~~~W~~~~~~M-----~~~RWYpT~~tL~D~~GrVliiGG~~~----- 126 (270)
... ...+..|||. +.+|++.+ .| ..+|-.++++.+ + ++++|+||...
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~---t~~W~~~~-~~~~~~~p~~R~~~~~~~~-~--~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTV---KNEWTFLT-KLDEEGGPEARTFHSMASD-E--NHVYVFGGVSKGGLMK 153 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECC---CCEEEEec-cCCCCCCCCCceeeEEEEE-C--CEEEEECCccCCCccC
Confidence 221 2467788887 57898654 35 568988888765 5 69999999741
Q ss_pred -----ceeEeccCCCCCC----CCC-C-CCCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEE
Q 042654 127 -----FIYEFVPKLSSSS----SDK-N-CPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTM 195 (270)
Q Consensus 127 -----~t~E~~ppL~~T~----d~R-~-yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I 195 (270)
...|.|++...+- +.. . -+..+.++.. .+++|+|+||.... +.... .....++...+.
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~--------~~~~iyv~GG~~~~-~~~gG--~~~~~~~~v~~y 222 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV--------VQGKIWVVYGFATS-ILPGG--KSDYESNAVQFF 222 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE--------ECCeEEEEeccccc-cccCC--ccceecCceEEE
Confidence 2467787632210 000 0 1122222211 24699999986421 00000 000112333344
Q ss_pred EecCCCCceeec----CCCCCcccCceeecCCccEEEEcCccccC-CCccCCCCCCccceeecCCCCCCCceeecc
Q 042654 196 VLTRNKHVWKME----HMPEPRLLNNMLILPTGHILIINGAKRGS-AGWNNAASLSFRPYLYKPRKTLGKVFSSSL 266 (270)
Q Consensus 196 ~l~~~~~~W~~e----~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~-aG~~~a~~Pv~~pelYdP~~~~G~rft~~~ 266 (270)
++ ....|+.- .||.+|..+.++++ +++|+|+||...-. .+......-.-.-+.|||.+. +|+++.
T Consensus 223 d~--~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~---~W~~~~ 292 (341)
T PLN02153 223 DP--ASGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL---VWEKLG 292 (341)
T ss_pred Ec--CCCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccccEEEEEcCcc---EEEecc
Confidence 43 46789853 48999988877665 79999999974200 000000000113468999999 999874
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.92 E-value=1.3e-08 Score=100.46 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=103.3
Q ss_pred CcccCCCeec--CCCcEEEecCCCCCCCceeeccccccccccccceeecCCCCCcEEEEcCCC-CceeEeccCCCCCC--
Q 042654 65 DSWCSSVVDM--ASRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRG-SFIYEFVPKLSSSS-- 139 (270)
Q Consensus 65 d~FCsgg~~L--~~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~-~~t~E~~ppL~~T~-- 139 (270)
.+|..||.-. ....+..|||. +++|.+.+ .|..+|.+.+...+ | |+|.|+||.+ ..+.|.|+|...+.
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~---~~~W~~~~-~m~~~r~~~~~v~~-~--~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYI---SNNWIPIP-PMNSPRLYASGVPA-N--NKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECC---CCEEEECC-CCCchhhcceEEEE-C--CEEEEECCcCCCCceEEEECCCCeEEE
Confidence 4555665422 24568889998 57898765 59999999988876 7 7999999974 35678887633210
Q ss_pred --C---CCCCCCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCc
Q 042654 140 --S---DKNCPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPR 213 (270)
Q Consensus 140 --d---~R~yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R 213 (270)
+ +|..+ +++. .+++|.++||.... ..+..+.+ ....+|+.. +|+.+|
T Consensus 346 ~~~l~~~r~~~---~~~~---------~~g~IYviGG~~~~-------------~~~ve~yd--p~~~~W~~~~~m~~~r 398 (480)
T PHA02790 346 MPSLLKPRCNP---AVAS---------INNVIYVIGGHSET-------------DTTTEYLL--PNHDQWQFGPSTYYPH 398 (480)
T ss_pred CCCCCCCCccc---EEEE---------ECCEEEEecCcCCC-------------CccEEEEe--CCCCEEEeCCCCCCcc
Confidence 0 23221 1221 25799999996421 12233333 345789976 999999
Q ss_pred ccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 214 LLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 214 ~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
..+.++. -+|++.|+||. -|.|||+++ +|+.+++
T Consensus 399 ~~~~~~~-~~~~IYv~GG~----------------~e~ydp~~~---~W~~~~~ 432 (480)
T PHA02790 399 YKSCALV-FGRRLFLVGRN----------------AEFYCESSN---TWTLIDD 432 (480)
T ss_pred ccceEEE-ECCEEEEECCc----------------eEEecCCCC---cEeEcCC
Confidence 9987665 48999999973 378999999 9998875
No 12
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.88 E-value=1.1e-07 Score=90.72 Aligned_cols=165 Identities=14% Similarity=0.158 Sum_probs=98.9
Q ss_pred CcEEEecCCCCCCCceeeccccccccccccceeecCCCCCcEEEEcCCCC------------------------------
Q 042654 77 RRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRGS------------------------------ 126 (270)
Q Consensus 77 ~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~------------------------------ 126 (270)
..+..|||. +.+|...+..+...|..+++..+-| |+|+|+||.+.
T Consensus 106 ~~v~~YD~~---~n~W~~~~~~~p~~~~~~~~~~~~~--~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~ 180 (376)
T PRK14131 106 DDVYKYDPK---TNSWQKLDTRSPVGLAGHVAVSLHN--GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDK 180 (376)
T ss_pred ccEEEEeCC---CCEEEeCCCCCCCcccceEEEEeeC--CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcC
Confidence 346778987 5789975533456677788777778 99999999742
Q ss_pred --------ceeEeccCCCCCC---CCCCC-CCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeE
Q 042654 127 --------FIYEFVPKLSSSS---SDKNC-PSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGT 194 (270)
Q Consensus 127 --------~t~E~~ppL~~T~---d~R~y-p~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~ 194 (270)
...|.|+|...+- ++-.+ +..+.++.. ...+|.|+||...... .+..+..
T Consensus 181 ~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~--------~~~~iYv~GG~~~~~~----------~~~~~~~ 242 (376)
T PRK14131 181 KPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVI--------KGNKLWLINGEIKPGL----------RTDAVKQ 242 (376)
T ss_pred ChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEE--------ECCEEEEEeeeECCCc----------CChhheE
Confidence 3467788733211 00011 122333222 2469999999632110 1112222
Q ss_pred EEecCCCCceeec-CCCCCccc-------CceeecCCccEEEEcCccccCC------C--cc-CCCCCCccceeecCCCC
Q 042654 195 MVLTRNKHVWKME-HMPEPRLL-------NNMLILPTGHILIINGAKRGSA------G--WN-NAASLSFRPYLYKPRKT 257 (270)
Q Consensus 195 I~l~~~~~~W~~e-~Mp~~R~m-------~~~vlLPDG~Vli~gGa~~G~a------G--~~-~a~~Pv~~pelYdP~~~ 257 (270)
.+++....+|+.. .||.+|.. +-++.+-+|+++|+||...... | +. .....+...|+|||+++
T Consensus 243 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~ 322 (376)
T PRK14131 243 GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG 322 (376)
T ss_pred EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCC
Confidence 3444456789965 99988742 2335678999999999753100 0 00 01122346899999998
Q ss_pred CCCceeeccc
Q 042654 258 LGKVFSSSLH 267 (270)
Q Consensus 258 ~G~rft~~~~ 267 (270)
+|+.+.+
T Consensus 323 ---~W~~~~~ 329 (376)
T PRK14131 323 ---KWQKVGE 329 (376)
T ss_pred ---cccccCc
Confidence 9987753
No 13
>PLN02193 nitrile-specifier protein
Probab=98.75 E-value=8e-07 Score=87.54 Aligned_cols=201 Identities=14% Similarity=0.121 Sum_probs=118.7
Q ss_pred CCceEeecCCC-----eeeeEEEeCCCCceEecCCCCCc---ccCCCeecC----------------CCcEEEecCCCCC
Q 042654 33 NKPSVFEDWSC-----YAHFVEYNILGNKIRPLRFDTDS---WCSSVVDMA----------------SRRIRYFRPCENG 88 (270)
Q Consensus 33 gkv~~~~~~~~-----~a~a~~yDp~T~t~~pl~v~td~---FCsgg~~L~----------------~~~~r~ydP~~~~ 88 (270)
+++-++++.+. ......||+.+++|+.+....++ =|.+++... .+.+..||+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~--- 252 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT--- 252 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC---
Confidence 56667777531 23467899999999976542221 133332211 3567788887
Q ss_pred CCceeeccccc---cccccccceeecCCCCCcEEEEcCCCC----ceeEeccCCCCCC----CC--CCCCCCCceecccC
Q 042654 89 HYNWKQLKWLL---SDARWYASNQILPAANDRVILVGGRGS----FIYEFVPKLSSSS----SD--KNCPSSGSSVLLCL 155 (270)
Q Consensus 89 ~~~W~~~~~~M---~~~RWYpT~~tL~D~~GrVliiGG~~~----~t~E~~ppL~~T~----d~--R~yp~sg~svmLPl 155 (270)
+.+|++.. .| -.+|.+++++.+ + ++++|+||.+. ...+.|++...+- .+ ..-+..+.++.+
T Consensus 253 t~~W~~l~-~~~~~P~~R~~h~~~~~-~--~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-- 326 (470)
T PLN02193 253 TNEWKLLT-PVEEGPTPRSFHSMAAD-E--ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-- 326 (470)
T ss_pred CCEEEEcC-cCCCCCCCccceEEEEE-C--CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE--
Confidence 67898754 34 578999988775 5 69999999742 3466776622210 00 001111222111
Q ss_pred CcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-C---CCCCcccCceeecCCccEEEEcC
Q 042654 156 DHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-H---MPEPRLLNNMLILPTGHILIING 231 (270)
Q Consensus 156 ~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~---Mp~~R~m~~~vlLPDG~Vli~gG 231 (270)
..++|+|+||.+.. ..+...+.+ ..+..|+.- . +|.+|..+.++++ +++++|+||
T Consensus 327 ------~~gkiyviGG~~g~------------~~~dv~~yD--~~t~~W~~~~~~g~~P~~R~~~~~~~~-~~~iyv~GG 385 (470)
T PLN02193 327 ------VQGKVWVVYGFNGC------------EVDDVHYYD--PVQDKWTQVETFGVRPSERSVFASAAV-GKHIVIFGG 385 (470)
T ss_pred ------ECCcEEEEECCCCC------------ccCceEEEE--CCCCEEEEeccCCCCCCCcceeEEEEE-CCEEEEECC
Confidence 24689999996421 122333333 346789843 3 5899998888776 789999999
Q ss_pred ccccC-CCccCCCCCCccceeecCCCCCCCceeecc
Q 042654 232 AKRGS-AGWNNAASLSFRPYLYKPRKTLGKVFSSSL 266 (270)
Q Consensus 232 a~~G~-aG~~~a~~Pv~~pelYdP~~~~G~rft~~~ 266 (270)
..... .+........-.-+.|||.+. +|+++.
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~---~W~~~~ 418 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETL---QWERLD 418 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcC---EEEEcc
Confidence 74210 000000001113579999999 999875
No 14
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.69 E-value=2.4e-07 Score=84.85 Aligned_cols=137 Identities=16% Similarity=0.319 Sum_probs=86.3
Q ss_pred CcEEEecCCCCCCCceeeccccccccccccceeecCCCCCcEEEEcCCC--CceeEeccCCC--CC----------CCCC
Q 042654 77 RRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRG--SFIYEFVPKLS--SS----------SSDK 142 (270)
Q Consensus 77 ~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~--~~t~E~~ppL~--~T----------~d~R 142 (270)
.-..+|||. +++++.. .+...=|=++...|+| |++|++||.. ...+.+|.|-. .+ ..+|
T Consensus 46 a~s~~yD~~---tn~~rpl--~v~td~FCSgg~~L~d--G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~R 118 (243)
T PF07250_consen 46 AHSVEYDPN---TNTFRPL--TVQTDTFCSGGAFLPD--GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGR 118 (243)
T ss_pred EEEEEEecC---CCcEEec--cCCCCCcccCcCCCCC--CCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCC
Confidence 346789998 5788753 3678889999999999 9999999973 34556665521 00 1167
Q ss_pred CCCCCCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCC---ceeEEEecCCCCceeecCCCCCcccCcee
Q 042654 143 NCPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLS---SCGTMVLTRNKHVWKMEHMPEPRLLNNML 219 (270)
Q Consensus 143 ~yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~---~~~~I~l~~~~~~W~~e~Mp~~R~m~~~v 219 (270)
=|| +++.|| +++|||+||.....|. +.|... ....+.+... . .....-=.++-+.
T Consensus 119 WYp---T~~~L~--------DG~vlIvGG~~~~t~E------~~P~~~~~~~~~~~~~l~~----~-~~~~~~nlYP~~~ 176 (243)
T PF07250_consen 119 WYP---TATTLP--------DGRVLIVGGSNNPTYE------FWPPKGPGPGPVTLPFLSQ----T-SDTLPNNLYPFVH 176 (243)
T ss_pred ccc---cceECC--------CCCEEEEeCcCCCccc------ccCCccCCCCceeeecchh----h-hccCccccCceEE
Confidence 787 567887 5899999998743332 333311 1111111000 0 0001112345567
Q ss_pred ecCCccEEEEcCccccCCCccCCCCCCccceeecCCCC
Q 042654 220 ILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKT 257 (270)
Q Consensus 220 lLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~ 257 (270)
|||||+|||.... ...|||+.++
T Consensus 177 llPdG~lFi~an~---------------~s~i~d~~~n 199 (243)
T PF07250_consen 177 LLPDGNLFIFANR---------------GSIIYDYKTN 199 (243)
T ss_pred EcCCCCEEEEEcC---------------CcEEEeCCCC
Confidence 9999999997764 3578888887
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.57 E-value=2.6e-06 Score=79.55 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=76.3
Q ss_pred CcEEEecCCCCCCCceeeccccccc-cccccceeecCCCCCcEEEEcCCCCc---e--eEecc--C-------CCCCCCC
Q 042654 77 RRIRYFRPCENGHYNWKQLKWLLSD-ARWYASNQILPAANDRVILVGGRGSF---I--YEFVP--K-------LSSSSSD 141 (270)
Q Consensus 77 ~~~r~ydP~~~~~~~W~~~~~~M~~-~RWYpT~~tL~D~~GrVliiGG~~~~---t--~E~~p--p-------L~~T~d~ 141 (270)
+.++.|||. +++|+..+ .|.. +|..++++.+ + |+|+|+||.... + .+.|. + +.....+
T Consensus 168 ~~v~~YDp~---t~~W~~~~-~~p~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~ 240 (346)
T TIGR03547 168 KNVLSYDPS---TNQWRNLG-ENPFLGTAGSAIVHK-G--NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPP 240 (346)
T ss_pred ceEEEEECC---CCceeECc-cCCCCcCCCceEEEE-C--CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCC
Confidence 468899998 67899765 4765 5655555554 7 799999997321 1 22232 1 1110002
Q ss_pred CCC-CCC--Cc-eecccCCcCCCCceeEEEEEcCCCCCchhhh--ccccc-c---cCCCceeEEEecCCCCceeec-CCC
Q 042654 142 KNC-PSS--GS-SVLLCLDHSNNFRKVKVMVCGGAAAGAYRVA--AQGRF-L---KGLSSCGTMVLTRNKHVWKME-HMP 210 (270)
Q Consensus 142 R~y-p~s--g~-svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~--~~~~~-~---pAs~~~~~I~l~~~~~~W~~e-~Mp 210 (270)
|.. +.. +. ++.+ .++|.|+||.+....... ....+ . ....++++-++ ...+|+.. +||
T Consensus 241 r~~~~~~~~~~~a~~~---------~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp 309 (346)
T TIGR03547 241 KSSSQEGLAGAFAGIS---------NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL--DNGKWSKVGKLP 309 (346)
T ss_pred CCCccccccEEeeeEE---------CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe--cCCcccccCCCC
Confidence 321 111 11 1222 479999999753110000 00000 0 01122333333 25689966 999
Q ss_pred CCcccCceeecCCccEEEEcCccc
Q 042654 211 EPRLLNNMLILPTGHILIINGAKR 234 (270)
Q Consensus 211 ~~R~m~~~vlLPDG~Vli~gGa~~ 234 (270)
.+|..+. ++.=+|+++|+||...
T Consensus 310 ~~~~~~~-~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 310 QGLAYGV-SVSWNNGVLLIGGENS 332 (346)
T ss_pred CCceeeE-EEEcCCEEEEEeccCC
Confidence 9997764 5667899999999853
No 16
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.51 E-value=6e-06 Score=78.74 Aligned_cols=159 Identities=17% Similarity=0.203 Sum_probs=83.5
Q ss_pred CcEEEecCCCCCCCceeeccccccccccccceeecCCCCCcEEEEcCCCC---ceeEec----cC-------CCCCCCCC
Q 042654 77 RRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRGS---FIYEFV----PK-------LSSSSSDK 142 (270)
Q Consensus 77 ~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~---~t~E~~----pp-------L~~T~d~R 142 (270)
+.+..|||. ++.|+... .|...+....+...-| ++|+|+||... .+.|+| ++ +.....+|
T Consensus 189 ~~v~~YD~~---t~~W~~~~-~~p~~~~~~~a~v~~~--~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 262 (376)
T PRK14131 189 KEVLSYDPS---TNQWKNAG-ESPFLGTAGSAVVIKG--NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP 262 (376)
T ss_pred ceEEEEECC---CCeeeECC-cCCCCCCCcceEEEEC--CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence 357889998 67899755 4765455555666668 89999999632 222322 22 11100022
Q ss_pred CC--CCCCceecccCCcCCCCceeEEEEEcCCCCCchhh-hccccc-----ccCCCceeEEEecCCCCceeec-CCCCCc
Q 042654 143 NC--PSSGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRV-AAQGRF-----LKGLSSCGTMVLTRNKHVWKME-HMPEPR 213 (270)
Q Consensus 143 ~y--p~sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~-~~~~~~-----~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R 213 (270)
.. +..-.+++.-. ..++|+|+||........ ...+.. .....+.++.++ ...+|+.. .||.+|
T Consensus 263 ~~~~~~~~~~~~a~~------~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp~~r 334 (376)
T PRK14131 263 GGSSQEGVAGAFAGY------SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYAL--VNGKWQKVGELPQGL 334 (376)
T ss_pred cCCcCCccceEecee------ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEe--cCCcccccCcCCCCc
Confidence 21 11101111100 246999999975311000 000000 001112233343 34689865 999999
Q ss_pred ccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCC
Q 042654 214 LLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKT 257 (270)
Q Consensus 214 ~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~ 257 (270)
..+.++.| +|+++|+||...+ + .+.+ +=+.|+|+..
T Consensus 335 ~~~~av~~-~~~iyv~GG~~~~--~--~~~~---~v~~~~~~~~ 370 (376)
T PRK14131 335 AYGVSVSW-NNGVLLIGGETAG--G--KAVS---DVTLLSWDGK 370 (376)
T ss_pred cceEEEEe-CCEEEEEcCCCCC--C--cEee---eEEEEEEcCC
Confidence 98865555 5889999997532 1 2222 2336777754
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.39 E-value=1.4e-05 Score=74.31 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=101.9
Q ss_pred CCCceEeecCC---CeeeeEEEeCCCCce----EecCC-CC------------CcccCCCeecC--CCcEEEecCCCCCC
Q 042654 32 WNKPSVFEDWS---CYAHFVEYNILGNKI----RPLRF-DT------------DSWCSSVVDMA--SRRIRYFRPCENGH 89 (270)
Q Consensus 32 ~gkv~~~~~~~---~~a~a~~yDp~T~t~----~pl~v-~t------------d~FCsgg~~L~--~~~~r~ydP~~~~~ 89 (270)
-+++-++++.+ .......||+.+++| +.+.- .. .++-.||.... ...+..|||. +
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~---~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE---T 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCC---C
Confidence 35566666654 245566799999987 44431 11 12222221111 3568889998 5
Q ss_pred Cceeecccccc-ccccccceeecCCCCCcEEEEcCCCC---ceeEeccCCCCCC----C--CCCCCCC--CceecccCCc
Q 042654 90 YNWKQLKWLLS-DARWYASNQILPAANDRVILVGGRGS---FIYEFVPKLSSSS----S--DKNCPSS--GSSVLLCLDH 157 (270)
Q Consensus 90 ~~W~~~~~~M~-~~RWYpT~~tL~D~~GrVliiGG~~~---~t~E~~ppL~~T~----d--~R~yp~s--g~svmLPl~~ 157 (270)
.+|++.+. |. .+|-.+.++.+ + |+|+|+||.+. ...|.|++-..+- + ....|.. +.+.+.-
T Consensus 149 ~~W~~~~~-~p~~~r~~~~~~~~-~--~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~--- 221 (323)
T TIGR03548 149 QEWFELPD-FPGEPRVQPVCVKL-Q--NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI--- 221 (323)
T ss_pred CCeeECCC-CCCCCCCcceEEEE-C--CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE---
Confidence 78997653 64 57877776655 5 69999999753 2357787622210 0 0011111 1111111
Q ss_pred CCCCceeEEEEEcCCCCCchhhhc------cc--------------ccccC-CCceeEEEecCCCCceeec-CCC-CCcc
Q 042654 158 SNNFRKVKVMVCGGAAAGAYRVAA------QG--------------RFLKG-LSSCGTMVLTRNKHVWKME-HMP-EPRL 214 (270)
Q Consensus 158 ~~~y~~~~VLv~GG~~~~~~~~~~------~~--------------~~~pA-s~~~~~I~l~~~~~~W~~e-~Mp-~~R~ 214 (270)
...+|+|+||.+...+.... .. ...+. ++++.+.++ ...+|+.. +|| .+|.
T Consensus 222 ----~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~~r~ 295 (323)
T TIGR03548 222 ----NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNV--RTGKWKSIGNSPFFARC 295 (323)
T ss_pred ----CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEEC--CCCeeeEcccccccccC
Confidence 24699999998642211000 00 00000 133444443 35689965 787 5777
Q ss_pred cCceeecCCccEEEEcCcc
Q 042654 215 LNNMLILPTGHILIINGAK 233 (270)
Q Consensus 215 m~~~vlLPDG~Vli~gGa~ 233 (270)
-+.++.+ |+++.|+||..
T Consensus 296 ~~~~~~~-~~~iyv~GG~~ 313 (323)
T TIGR03548 296 GAALLLT-GNNIFSINGEL 313 (323)
T ss_pred chheEEE-CCEEEEEeccc
Confidence 7766666 78999999974
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.27 E-value=2.8e-05 Score=72.24 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=98.8
Q ss_pred CCCcccCCCeecCC------------CcEEEec-CCCCCCCceeeccccccccccccceeecCCCCCcEEEEcCCCC---
Q 042654 63 DTDSWCSSVVDMAS------------RRIRYFR-PCENGHYNWKQLKWLLSDARWYASNQILPAANDRVILVGGRGS--- 126 (270)
Q Consensus 63 ~td~FCsgg~~L~~------------~~~r~yd-P~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~--- 126 (270)
...++|.||.-.+. ..+-+|+ +. .+-.|.+.. .|..+|-|.+++.+ + ++|+|+||.+.
T Consensus 13 ~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~--~~~~W~~~~-~lp~~r~~~~~~~~-~--~~lyviGG~~~~~~ 86 (323)
T TIGR03548 13 GDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDEN--SNLKWVKDG-QLPYEAAYGASVSV-E--NGIYYIGGSNSSER 86 (323)
T ss_pred CCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCC--CceeEEEcc-cCCccccceEEEEE-C--CEEEEEcCCCCCCC
Confidence 34577888875542 2344444 32 123698754 58999988888877 5 69999999742
Q ss_pred -ceeEeccCCCCCC-------CCCCCCCCC-ceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEe
Q 042654 127 -FIYEFVPKLSSSS-------SDKNCPSSG-SSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVL 197 (270)
Q Consensus 127 -~t~E~~ppL~~T~-------d~R~yp~sg-~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l 197 (270)
...|.|++...+. ++...|... +++. ..++|.|+||...+. .++...+.++
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~---------~~~~iYv~GG~~~~~-----------~~~~v~~yd~ 146 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACY---------KDGTLYVGGGNRNGK-----------PSNKSYLFNL 146 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE---------ECCEEEEEeCcCCCc-----------cCceEEEEcC
Confidence 3455555321110 000111111 1222 246999999964211 2344445554
Q ss_pred cCCCCceeec-CCCC-CcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 198 TRNKHVWKME-HMPE-PRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 198 ~~~~~~W~~e-~Mp~-~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
....|+.. +|+. +|..+.++. -++++.|+||.... . ...-+.|||+++ +|+++++
T Consensus 147 --~~~~W~~~~~~p~~~r~~~~~~~-~~~~iYv~GG~~~~------~---~~~~~~yd~~~~---~W~~~~~ 203 (323)
T TIGR03548 147 --ETQEWFELPDFPGEPRVQPVCVK-LQNELYVFGGGSNI------A---YTDGYKYSPKKN---QWQKVAD 203 (323)
T ss_pred --CCCCeeECCCCCCCCCCcceEEE-ECCEEEEEcCCCCc------c---ccceEEEecCCC---eeEECCC
Confidence 35789976 7984 787776544 48999999997421 0 113479999999 9999875
No 19
>PLN02153 epithiospecifier protein
Probab=98.21 E-value=3.9e-05 Score=71.89 Aligned_cols=148 Identities=14% Similarity=0.197 Sum_probs=88.2
Q ss_pred CCceeeccc---cccccccccceeecCCCCCcEEEEcCCCC------ceeEeccCCCCC-------CC-CCCCCCCCcee
Q 042654 89 HYNWKQLKW---LLSDARWYASNQILPAANDRVILVGGRGS------FIYEFVPKLSSS-------SS-DKNCPSSGSSV 151 (270)
Q Consensus 89 ~~~W~~~~~---~M~~~RWYpT~~tL~D~~GrVliiGG~~~------~t~E~~ppL~~T-------~d-~R~yp~sg~sv 151 (270)
...|.+... .|-.+|.-++++.+ + ++|+|+||... ...+.|++.... .+ +|.. ..+.+
T Consensus 6 ~~~W~~~~~~~~~~P~pR~~h~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~-~~~~~- 80 (341)
T PLN02153 6 QGGWIKVEQKGGKGPGPRCSHGIAVV-G--DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS-CLGVR- 80 (341)
T ss_pred CCeEEEecCCCCCCCCCCCcceEEEE-C--CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCc-cCceE-
Confidence 356886432 36678998988877 5 59999999742 245667752210 00 1210 01111
Q ss_pred cccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CC-----CCCcccCceeecCCcc
Q 042654 152 LLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HM-----PEPRLLNNMLILPTGH 225 (270)
Q Consensus 152 mLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~M-----p~~R~m~~~vlLPDG~ 225 (270)
+.- ...+|.|+||..... ..+...+.++ ...+|+.. .| |.+|..+.++++ +++
T Consensus 81 ~~~-------~~~~iyv~GG~~~~~-----------~~~~v~~yd~--~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~ 139 (341)
T PLN02153 81 MVA-------VGTKLYIFGGRDEKR-----------EFSDFYSYDT--VKNEWTFLTKLDEEGGPEARTFHSMASD-ENH 139 (341)
T ss_pred EEE-------ECCEEEEECCCCCCC-----------ccCcEEEEEC--CCCEEEEeccCCCCCCCCCceeeEEEEE-CCE
Confidence 111 246999999964211 1223334443 35789853 66 889998887765 789
Q ss_pred EEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 226 ILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 226 Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
++|+||...+ +........-.-+.|||+++ +|+++.+
T Consensus 140 iyv~GG~~~~--~~~~~~~~~~~v~~yd~~~~---~W~~l~~ 176 (341)
T PLN02153 140 VYVFGGVSKG--GLMKTPERFRTIEAYNIADG---KWVQLPD 176 (341)
T ss_pred EEEECCccCC--CccCCCcccceEEEEECCCC---eEeeCCC
Confidence 9999998532 11111111123478999999 9998764
No 20
>PLN02193 nitrile-specifier protein
Probab=98.13 E-value=8.1e-05 Score=73.42 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=93.5
Q ss_pred EEEecCCCC-CCCceeeccc--cccccccccceeecCCCCCcEEEEcCCCC------ceeEeccCCCCCC---CC-CCCC
Q 042654 79 IRYFRPCEN-GHYNWKQLKW--LLSDARWYASNQILPAANDRVILVGGRGS------FIYEFVPKLSSSS---SD-KNCP 145 (270)
Q Consensus 79 ~r~ydP~~~-~~~~W~~~~~--~M~~~RWYpT~~tL~D~~GrVliiGG~~~------~t~E~~ppL~~T~---d~-R~yp 145 (270)
+.+++|... ....|..... .|-.+|..++++.+.+ +|+|+||... ...+.|++-..+- +. -..|
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~---~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P 215 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGN---KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVP 215 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECC---EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCC
Confidence 344466432 1368986432 3567999999998855 9999999732 2356666522110 00 0111
Q ss_pred C---CCceecccCCcCCCCceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CC---CCCcccCce
Q 042654 146 S---SGSSVLLCLDHSNNFRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HM---PEPRLLNNM 218 (270)
Q Consensus 146 ~---sg~svmLPl~~~~~y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~M---p~~R~m~~~ 218 (270)
. .+.+ +.- ...+|.|+||.... ..++...++++ ...+|+.. +| |.+|..+.+
T Consensus 216 ~~~~~~~~-~v~-------~~~~lYvfGG~~~~-----------~~~ndv~~yD~--~t~~W~~l~~~~~~P~~R~~h~~ 274 (470)
T PLN02193 216 HLSCLGVR-MVS-------IGSTLYVFGGRDAS-----------RQYNGFYSFDT--TTNEWKLLTPVEEGPTPRSFHSM 274 (470)
T ss_pred CCcccceE-EEE-------ECCEEEEECCCCCC-----------CCCccEEEEEC--CCCEEEEcCcCCCCCCCccceEE
Confidence 1 1211 111 24689999996521 12344555554 35789854 66 899999988
Q ss_pred eecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 219 LILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 219 vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
+++ ++++.|+||... .. ....-+.|||.+. +|+++++
T Consensus 275 ~~~-~~~iYv~GG~~~--~~------~~~~~~~yd~~t~---~W~~~~~ 311 (470)
T PLN02193 275 AAD-EENVYVFGGVSA--TA------RLKTLDSYNIVDK---KWFHCST 311 (470)
T ss_pred EEE-CCEEEEECCCCC--CC------CcceEEEEECCCC---EEEeCCC
Confidence 775 789999999742 11 1224578999998 9998764
No 21
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0073 Score=58.37 Aligned_cols=199 Identities=19% Similarity=0.297 Sum_probs=112.9
Q ss_pred CCCCCcCCC-CCCcCCCceEeecCCC--------eeeeEEEeCCCCceEecCCCCCcccCCCeecC--------------
Q 042654 19 SPQHCHNAT-SPIQWNKPSVFEDWSC--------YAHFVEYNILGNKIRPLRFDTDSWCSSVVDMA-------------- 75 (270)
Q Consensus 19 ~~~~~~~~~-~~~~~gkv~~~~~~~~--------~a~a~~yDp~T~t~~pl~v~td~FCsgg~~L~-------------- 75 (270)
=||.=|+.. +.+.-||.-++++.+. ..-+..|||.+|+|.-++...-+-..|++.-.
T Consensus 78 FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~ 157 (381)
T COG3055 78 FPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQ 157 (381)
T ss_pred CCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccH
Confidence 356666655 7778888888888754 34688999999999988865443333332222
Q ss_pred -------------------------------------CCcEEEecCCCCCCCceeeccccccccccccc---eeecCCCC
Q 042654 76 -------------------------------------SRRIRYFRPCENGHYNWKQLKWLLSDARWYAS---NQILPAAN 115 (270)
Q Consensus 76 -------------------------------------~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT---~~tL~D~~ 115 (270)
.+.+-.|+|+ ++.|.- +..--||++ ++..-+
T Consensus 158 ~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~---~n~W~~----~G~~pf~~~aGsa~~~~~-- 228 (381)
T COG3055 158 NIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPS---TNQWRN----LGENPFYGNAGSAVVIKG-- 228 (381)
T ss_pred HhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccc---cchhhh----cCcCcccCccCcceeecC--
Confidence 4556778888 678973 334455654 334455
Q ss_pred CcEEEEcCCCCceeEeccCCCCCCCCCCCCCCC-------ceecccCCcC---------CCCceeEEEEEcCCCCCchhh
Q 042654 116 DRVILVGGRGSFIYEFVPKLSSSSSDKNCPSSG-------SSVLLCLDHS---------NNFRKVKVMVCGGAAAGAYRV 179 (270)
Q Consensus 116 GrVliiGG~~~~t~E~~ppL~~T~d~R~yp~sg-------~svmLPl~~~---------~~y~~~~VLv~GG~~~~~~~~ 179 (270)
.++++|-| |+.|-|+.+. ...+-..+ .+.+-+..-+ ..+...+|||.||++-....+
T Consensus 229 n~~~lInG------EiKpGLRt~~-~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~ 301 (381)
T COG3055 229 NKLTLING------EIKPGLRTAE-VKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALK 301 (381)
T ss_pred CeEEEEcc------eecCCccccc-eeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHH
Confidence 56666655 5555443321 00000000 0001010000 124468999999997533222
Q ss_pred hcccccccCCC----ce-eEEEecCCCCceeec-CCCCCcccCceeecCCccEEEEcCcccc
Q 042654 180 AAQGRFLKGLS----SC-GTMVLTRNKHVWKME-HMPEPRLLNNMLILPTGHILIINGAKRG 235 (270)
Q Consensus 180 ~~~~~~~pAs~----~~-~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlLPDG~Vli~gGa~~G 235 (270)
+.+.-.+-|.+ +- ..|.+-+ +..|+.. .||.++.++-++..+| +||++||-..|
T Consensus 302 ~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~YG~s~~~nn-~vl~IGGE~~~ 361 (381)
T COG3055 302 AYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAYGVSLSYNN-KVLLIGGETSG 361 (381)
T ss_pred HHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccceEEEecCC-cEEEEccccCC
Confidence 21111111222 11 1133222 7899976 9999999998777665 58999998753
No 22
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.15 E-value=0.00036 Score=47.44 Aligned_cols=46 Identities=13% Similarity=0.261 Sum_probs=28.8
Q ss_pred CcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 212 PRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 212 ~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
||..|.++.++|++|+|.||...- + ...-.-++||+++. +|+++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~--~-----~~~~d~~~~d~~~~---~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSS--G-----SPLNDLWIFDIETN---TWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE---T-----EE---EEEEETTTT---EEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCC--C-----cccCCEEEEECCCC---EEEECCC
Confidence 699999999999999999998641 1 22335679999999 9999843
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.91 E-value=0.015 Score=58.06 Aligned_cols=170 Identities=17% Similarity=0.248 Sum_probs=100.8
Q ss_pred CCCceEeecCCC---eee--eEEEeCCCCceEecCCCCCcc---cCCCeecC-----------------CCcEEEecCCC
Q 042654 32 WNKPSVFEDWSC---YAH--FVEYNILGNKIRPLRFDTDSW---CSSVVDMA-----------------SRRIRYFRPCE 86 (270)
Q Consensus 32 ~gkv~~~~~~~~---~a~--a~~yDp~T~t~~pl~v~td~F---Csgg~~L~-----------------~~~~r~ydP~~ 86 (270)
..|+.++++..+ .+- -.++|..+..|.-... +-.+ ++|+..-. ...+..||..
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~-~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~- 147 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAA-TGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLS- 147 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccc-cCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCC-
Confidence 566777777754 333 5677777655433321 1111 22222111 2356666665
Q ss_pred CCCCceeec--cccccccccccceeecCCCCCcEEEEcCCCCc-----eeEeccC-------CCCCC--C-CCCCCCCCc
Q 042654 87 NGHYNWKQL--KWLLSDARWYASNQILPAANDRVILVGGRGSF-----IYEFVPK-------LSSSS--S-DKNCPSSGS 149 (270)
Q Consensus 87 ~~~~~W~~~--~~~M~~~RWYpT~~tL~D~~GrVliiGG~~~~-----t~E~~pp-------L~~T~--d-~R~yp~sg~ 149 (270)
+++|... ...+-.+|+.+|++.-.+ +|+|.||.+.. ..-+|+. +.... + +|. |.
T Consensus 148 --t~~W~~l~~~~~~P~~r~~Hs~~~~g~---~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~----gH 218 (482)
T KOG0379|consen 148 --TRTWSLLSPTGDPPPPRAGHSATVVGT---KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY----GH 218 (482)
T ss_pred --CCcEEEecCcCCCCCCcccceEEEECC---EEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC----Cc
Confidence 7899853 235778999999999988 99999998432 2334443 11111 1 333 33
Q ss_pred eecccCCcCCCCceeEEEEEcCCC-CCchhhhcccccccCCCceeEEEecCCCCceee----cCCCCCcccCceeecCCc
Q 042654 150 SVLLCLDHSNNFRKVKVMVCGGAA-AGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKM----EHMPEPRLLNNMLILPTG 224 (270)
Q Consensus 150 svmLPl~~~~~y~~~~VLv~GG~~-~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~----e~Mp~~R~m~~~vlLPDG 224 (270)
+..+ ...+.+++||.. .+. -++....+++.. -.|.. ..+|.+|..|.++..-+
T Consensus 219 ~~~~--------~~~~~~v~gG~~~~~~-----------~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~~~~- 276 (482)
T KOG0379|consen 219 AMVV--------VGNKLLVFGGGDDGDV-----------YLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTVSGD- 276 (482)
T ss_pred eEEE--------ECCeEEEEeccccCCc-----------eecceEeeeccc--ceeeeccccCCCCCCcceeeeEEECC-
Confidence 3222 346788888876 222 234456677653 67772 38999999999995544
Q ss_pred cEEEEcCccc
Q 042654 225 HILIINGAKR 234 (270)
Q Consensus 225 ~Vli~gGa~~ 234 (270)
+++|+||...
T Consensus 277 ~~~l~gG~~~ 286 (482)
T KOG0379|consen 277 HLLLFGGGTD 286 (482)
T ss_pred EEEEEcCCcc
Confidence 5667777654
No 24
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.35 E-value=0.0076 Score=41.20 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=32.5
Q ss_pred ccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeecccC
Q 042654 214 LLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLHK 268 (270)
Q Consensus 214 ~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~~ 268 (270)
..+-+++++|++++|+||...+ ....-.-.-++||+++. +|+++.+.
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~~-----~~~~~~~~v~~~d~~t~---~W~~~~~~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGTD-----NGGSSSNDVWVFDTETN---QWTELSPM 48 (49)
T ss_pred ccceEEEEECCEEEEECCcccC-----CCCcccceeEEEECCCC---EEeecCCC
Confidence 3455667889999999999111 11112234679999999 99998763
No 25
>PF13964 Kelch_6: Kelch motif
Probab=96.24 E-value=0.0097 Score=40.61 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=34.6
Q ss_pred CcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 212 PRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 212 ~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
+|..+.++. -+|+|+|+||.... ..+.-.-++|||++. +|+++++
T Consensus 1 pR~~~s~v~-~~~~iyv~GG~~~~-------~~~~~~v~~yd~~t~---~W~~~~~ 45 (50)
T PF13964_consen 1 PRYGHSAVV-VGGKIYVFGGYDNS-------GKYSNDVERYDPETN---TWEQLPP 45 (50)
T ss_pred CCccCEEEE-ECCEEEEECCCCCC-------CCccccEEEEcCCCC---cEEECCC
Confidence 577777655 68899999998632 334456789999999 9999875
No 26
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=93.52 E-value=0.044 Score=37.00 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=14.9
Q ss_pred cccccceeecCCCCCcEEEEcCCC
Q 042654 102 ARWYASNQILPAANDRVILVGGRG 125 (270)
Q Consensus 102 ~RWYpT~~tL~D~~GrVliiGG~~ 125 (270)
+|++++++.+.| ++|+|+||.+
T Consensus 1 pR~~h~~~~~~~--~~i~v~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGD--NSIYVFGGRD 22 (49)
T ss_dssp --BS-EEEEE-T--TEEEEE--EE
T ss_pred CcceEEEEEEeC--CeEEEECCCC
Confidence 699999999999 9999999984
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.37 E-value=0.38 Score=45.66 Aligned_cols=187 Identities=14% Similarity=0.267 Sum_probs=98.2
Q ss_pred CcCCCCCCcCCCceEeecCCCeeeeEEEeCCCCceEecCCC------CC--cccC--------CCeecC----CCcEEEe
Q 042654 23 CHNATSPIQWNKPSVFEDWSCYAHFVEYNILGNKIRPLRFD------TD--SWCS--------SVVDMA----SRRIRYF 82 (270)
Q Consensus 23 ~~~~~~~~~~gkv~~~~~~~~~a~a~~yDp~T~t~~pl~v~------td--~FCs--------gg~~L~----~~~~r~y 82 (270)
+.|+.+..-||-.-..++ .|- .-.+|||+|++|.-..|. .| +-|- ||-... .+.+..+
T Consensus 85 V~y~d~~yvWGGRND~eg-aCN-~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 85 VEYQDKAYVWGGRNDDEG-ACN-LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred EEEcceEEEEcCccCccc-ccc-eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 445556556654332221 132 345799999999876652 11 1111 111110 4455556
Q ss_pred cCCCCCCCceeecccccccccc--ccceeecCCCCCcEEEEcCCCCc------eeEeccC----CCC-CC-CCCCCCCCC
Q 042654 83 RPCENGHYNWKQLKWLLSDARW--YASNQILPAANDRVILVGGRGSF------IYEFVPK----LSS-SS-SDKNCPSSG 148 (270)
Q Consensus 83 dP~~~~~~~W~~~~~~M~~~RW--YpT~~tL~D~~GrVliiGG~~~~------t~E~~pp----L~~-T~-d~R~yp~sg 148 (270)
|-. +-+|.+-...=.-+|| ++|++.+ | |+..|+||+... .-|.|.- |.. |. -.|..
T Consensus 163 d~~---TmtWr~~~Tkg~PprwRDFH~a~~~-~--~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p---- 232 (392)
T KOG4693|consen 163 DFA---TMTWREMHTKGDPPRWRDFHTASVI-D--GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP---- 232 (392)
T ss_pred ecc---ceeeeehhccCCCchhhhhhhhhhc-c--ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCC----
Confidence 554 6789864322334666 6777766 5 799999998421 1244432 111 11 02232
Q ss_pred ceecccCCcCC--C-CceeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceee----cCCCCCcccCceeec
Q 042654 149 SSVLLCLDHSN--N-FRKVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKM----EHMPEPRLLNNMLIL 221 (270)
Q Consensus 149 ~svmLPl~~~~--~-y~~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~----e~Mp~~R~m~~~vlL 221 (270)
...|+|-..+. . -|++|+.++||-+.-- ..-.++. ...++....|.. ..-|.+|.-..+++.
T Consensus 233 ~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l-n~HfndL----------y~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 233 ENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL-NVHFNDL----------YCFDPKTSMWSVISVRGKYPSARRRQCSVVS 301 (392)
T ss_pred CCCcCCCcccccceEEEcceEEEecccchhh-hhhhcce----------eecccccchheeeeccCCCCCcccceeEEEE
Confidence 23466654332 1 2579999999976310 0000110 111222334542 256788887777665
Q ss_pred CCccEEEEcCcc
Q 042654 222 PTGHILIINGAK 233 (270)
Q Consensus 222 PDG~Vli~gGa~ 233 (270)
.|||++.||..
T Consensus 302 -g~kv~LFGGTs 312 (392)
T KOG4693|consen 302 -GGKVYLFGGTS 312 (392)
T ss_pred -CCEEEEecCCC
Confidence 78999999976
No 28
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.01 E-value=0.11 Score=34.39 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=33.0
Q ss_pred CcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCceeeccc
Q 042654 212 PRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVFSSSLH 267 (270)
Q Consensus 212 ~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~ 267 (270)
+|..+. ++.=+++|+|+||... ...+.-.-+.|||.++ +|+++++
T Consensus 1 pR~~~~-~~~~~~~iyv~GG~~~-------~~~~~~~v~~yd~~~~---~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHA-AVVVGNKIYVIGGYDG-------NNQPTNSVEVYDPETN---TWEELPP 45 (47)
T ss_dssp -BBSEE-EEEETTEEEEEEEBES-------TSSBEEEEEEEETTTT---EEEEEEE
T ss_pred CCccCE-EEEECCEEEEEeeecc-------cCceeeeEEEEeCCCC---EEEEcCC
Confidence 355554 4445899999999863 2344557889999999 9999875
No 29
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=91.87 E-value=0.37 Score=32.72 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceee
Q 042654 164 VKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLI 220 (270)
Q Consensus 164 ~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vl 220 (270)
.+|+|+||...+ ....++.+.++++ ...+|+.- ++|.+|..|.+++
T Consensus 2 ~~~~vfGG~~~~---------~~~~~nd~~~~~~--~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDD---------GGTRLNDVWVFDL--DTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CEEEEECCcCCC---------CCCEecCEEEEEC--CCCEEEECCCCCCCccceEEEE
Confidence 489999997631 1234456666665 45699965 9999999999875
No 30
>smart00612 Kelch Kelch domain.
Probab=91.21 E-value=0.36 Score=31.13 Aligned_cols=44 Identities=27% Similarity=0.486 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCcccCceeec
Q 042654 165 KVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPRLLNNMLIL 221 (270)
Q Consensus 165 ~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R~m~~~vlL 221 (270)
+|.|+||.... ..++.+.+.+ .....|+.. +|+.+|..+.+++|
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd--~~~~~W~~~~~~~~~r~~~~~~~~ 45 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYD--PETNKWTPLPSMPTPRSGHGVAVI 45 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEEC--CCCCeEccCCCCCCccccceEEEe
Confidence 58899996421 1233333333 346789966 99999999987766
No 31
>PF13964 Kelch_6: Kelch motif
Probab=90.86 E-value=0.48 Score=32.08 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=27.4
Q ss_pred eeEEEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceeec-CCCCCc
Q 042654 163 KVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKME-HMPEPR 213 (270)
Q Consensus 163 ~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~e-~Mp~~R 213 (270)
.++|.|+||.... ...++...+.++ ...+|+.- +||.+|
T Consensus 11 ~~~iyv~GG~~~~----------~~~~~~v~~yd~--~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 11 GGKIYVFGGYDNS----------GKYSNDVERYDP--ETNTWEQLPPMPTPR 50 (50)
T ss_pred CCEEEEECCCCCC----------CCccccEEEEcC--CCCcEEECCCCCCCC
Confidence 5799999998642 234455555554 36789965 999998
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=89.14 E-value=6.7 Score=37.47 Aligned_cols=90 Identities=18% Similarity=0.356 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCCchhhhcccccccCCCceeEEE-ecCCCCceee--c--CCCCCcccCceeecCCccEEEEcCccccCC
Q 042654 163 KVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMV-LTRNKHVWKM--E--HMPEPRLLNNMLILPTGHILIINGAKRGSA 237 (270)
Q Consensus 163 ~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~-l~~~~~~W~~--e--~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~a 237 (270)
.+...|+||-..... +. -.--..=|.+|. ++-....|.. + -.|.+|.-|.+ ..=||++.+.||.. |.-
T Consensus 191 ~~~MYiFGGR~D~~g--pf---Hs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~-fvYng~~Y~FGGYn-g~l 263 (392)
T KOG4693|consen 191 DGMMYIFGGRSDESG--PF---HSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHST-FVYNGKMYMFGGYN-GTL 263 (392)
T ss_pred cceEEEeccccccCC--Cc---cchhhhhcceeEEEeccccccccCCCCCcCCCcccccce-EEEcceEEEecccc-hhh
Confidence 467889999753211 00 011222377664 5556788984 3 45888888865 44599999999975 221
Q ss_pred CccCCCCCCc-cceeecCCCCCCCceeecccC
Q 042654 238 GWNNAASLSF-RPYLYKPRKTLGKVFSSSLHK 268 (270)
Q Consensus 238 G~~~a~~Pv~-~pelYdP~~~~G~rft~~~~~ 268 (270)
|-.| .-.-|||.+. -|+...++
T Consensus 264 ------n~HfndLy~FdP~t~---~W~~I~~~ 286 (392)
T KOG4693|consen 264 ------NVHFNDLYCFDPKTS---MWSVISVR 286 (392)
T ss_pred ------hhhhcceeecccccc---hheeeecc
Confidence 1111 1235799998 88876543
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=86.81 E-value=5.2 Score=40.05 Aligned_cols=133 Identities=20% Similarity=0.308 Sum_probs=77.2
Q ss_pred ccccccccceeecCCCCCcEEEEcCCCCc----eeEec--cC-------CCCCCCCCCCCCCCceecccCCcCCCCceeE
Q 042654 99 LSDARWYASNQILPAANDRVILVGGRGSF----IYEFV--PK-------LSSSSSDKNCPSSGSSVLLCLDHSNNFRKVK 165 (270)
Q Consensus 99 M~~~RWYpT~~tL~D~~GrVliiGG~~~~----t~E~~--pp-------L~~T~d~R~yp~sg~svmLPl~~~~~y~~~~ 165 (270)
.-.+||-+++.+.. .+++|.||.... ..++| +- ...+. .+-+|..|.+ |-- ...+
T Consensus 57 ~p~~R~~hs~~~~~---~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g-~~p~~r~g~~-~~~-------~~~~ 124 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIG---NKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG-DEPSPRYGHS-LSA-------VGDK 124 (482)
T ss_pred CcchhhccceeEEC---CEEEEECCCCCCCccccceeEEeecCCcccccccccC-CCCCccccee-EEE-------ECCe
Confidence 45679999999984 599999997422 11232 11 00000 1112222222 111 2368
Q ss_pred EEEEcCCCCCchhhhcccccccCCCceeEEEecCCCCceee----cCCCCCcccCceeecCCccEEEEcCccccCCCccC
Q 042654 166 VMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVLTRNKHVWKM----EHMPEPRLLNNMLILPTGHILIINGAKRGSAGWNN 241 (270)
Q Consensus 166 VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~----e~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~ 241 (270)
++++||.... +. . ...-+ .++-....|+. ..+|.+|..|.+++-= -+|+|.||... .+ .
T Consensus 125 l~lfGG~~~~-~~------~---~~~l~--~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~--~~--~ 187 (482)
T KOG0379|consen 125 LYLFGGTDKK-YR------N---LNELH--SLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGG--TG--D 187 (482)
T ss_pred EEEEccccCC-CC------C---hhheE--eccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccC--cc--c
Confidence 9999998641 11 0 11111 22334567773 3789999999877765 89999999853 11 0
Q ss_pred CCCCCccceeecCCCCCCCceeecc
Q 042654 242 AASLSFRPYLYKPRKTLGKVFSSSL 266 (270)
Q Consensus 242 a~~Pv~~pelYdP~~~~G~rft~~~ 266 (270)
-.| .=.+||+++. +|+++.
T Consensus 188 ~~n---dl~i~d~~~~---~W~~~~ 206 (482)
T KOG0379|consen 188 SLN---DLHIYDLETS---TWSELD 206 (482)
T ss_pred cee---eeeeeccccc---cceecc
Confidence 122 3459999999 798874
No 34
>smart00612 Kelch Kelch domain.
Probab=86.15 E-value=0.81 Score=29.39 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=25.8
Q ss_pred CCcEEEecCCCCCCCceeeccccccccccccceeecC
Q 042654 76 SRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILP 112 (270)
Q Consensus 76 ~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~ 112 (270)
...+..|||. +.+|.+.+ .|..+|.++++..+-
T Consensus 14 ~~~v~~yd~~---~~~W~~~~-~~~~~r~~~~~~~~~ 46 (47)
T smart00612 14 LKSVEVYDPE---TNKWTPLP-SMPTPRSGHGVAVIN 46 (47)
T ss_pred eeeEEEECCC---CCeEccCC-CCCCccccceEEEeC
Confidence 4567889998 56898654 699999999887763
No 35
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=84.33 E-value=2.5 Score=39.86 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=67.3
Q ss_pred EEeCCCCceEecC-------CCCCcccC-CCeecC---CCcEEEecCCCCCCCceeeccccccccccccceeecCCCCCc
Q 042654 49 EYNILGNKIRPLR-------FDTDSWCS-SVVDMA---SRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDR 117 (270)
Q Consensus 49 ~yDp~T~t~~pl~-------v~td~FCs-gg~~L~---~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~Gr 117 (270)
+||++.-+..|.. +.+-+||. -+.+|. .+.+|+.|-.+ .+-+ +.|..+----|+++-.| |+
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rT---gt~v---~sL~~~s~VtSlEvs~d--G~ 197 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRT---GTEV---QSLEFNSPVTSLEVSQD--GR 197 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEecc---CcEE---EEEecCCCCcceeeccC--CC
Confidence 4566555555554 35789994 566777 78999998652 2322 34666666678889999 99
Q ss_pred EEEEcCCCCceeEeccC--CCCCCCCCCCCCCCc-eecccCCcCCCCceeEEEEEcCCCC
Q 042654 118 VILVGGRGSFIYEFVPK--LSSSSSDKNCPSSGS-SVLLCLDHSNNFRKVKVMVCGGAAA 174 (270)
Q Consensus 118 VliiGG~~~~t~E~~pp--L~~T~d~R~yp~sg~-svmLPl~~~~~y~~~~VLv~GG~~~ 174 (270)
+|+|.= .-+.-||++ +..-. .+..|..=. +.|-| +-+++||||...
T Consensus 198 ilTia~--gssV~Fwdaksf~~lK-s~k~P~nV~SASL~P--------~k~~fVaGged~ 246 (334)
T KOG0278|consen 198 ILTIAY--GSSVKFWDAKSFGLLK-SYKMPCNVESASLHP--------KKEFFVAGGEDF 246 (334)
T ss_pred EEEEec--CceeEEecccccccee-eccCccccccccccC--------CCceEEecCcce
Confidence 999853 347788876 11100 344554332 33444 238999999764
No 36
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=84.22 E-value=3.8 Score=40.64 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=70.2
Q ss_pred eeeeEEEeCCCCceE-ecC----CCCCcccCCCeecC----CCcEEEecCCCCCCCceeeccccccccccccceeecCCC
Q 042654 44 YAHFVEYNILGNKIR-PLR----FDTDSWCSSVVDMA----SRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAA 114 (270)
Q Consensus 44 ~a~a~~yDp~T~t~~-pl~----v~td~FCsgg~~L~----~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~ 114 (270)
-..-.+||..|++.- .+. +..-.|+..|+.|. .++||++||... +--+ |... -.+-==+-+..|.|
T Consensus 153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~-e~~~--heG~k~~Raifl~~- 227 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVS-EGVA--HEGAKPARAIFLAS- 227 (472)
T ss_pred CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEee-eccc--ccCCCcceeEEecc-
Confidence 335678999888632 122 34557999999998 899999999842 1111 1110 00111234678999
Q ss_pred CCcEEEEcCC--CCceeEeccC--CCCCCCCCCCCCCCceecccCCcCCCCceeEEEEEcCCC
Q 042654 115 NDRVILVGGR--GSFIYEFVPK--LSSSSSDKNCPSSGSSVLLCLDHSNNFRKVKVMVCGGAA 173 (270)
Q Consensus 115 ~GrVliiGG~--~~~t~E~~pp--L~~T~d~R~yp~sg~svmLPl~~~~~y~~~~VLv~GG~~ 173 (270)
|++|..|=+ ..-.+-+|+| |..-. .-.---+++.||||..-.+ ..-|.+||=++
T Consensus 228 -g~i~tTGfsr~seRq~aLwdp~nl~eP~-~~~elDtSnGvl~PFyD~d---t~ivYl~GKGD 285 (472)
T KOG0303|consen 228 -GKIFTTGFSRMSERQIALWDPNNLEEPI-ALQELDTSNGVLLPFYDPD---TSIVYLCGKGD 285 (472)
T ss_pred -CceeeeccccccccceeccCcccccCcc-eeEEeccCCceEEeeecCC---CCEEEEEecCC
Confidence 998777654 3445777877 32200 0001123678999974221 24577888664
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.63 E-value=2.1 Score=28.95 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=15.4
Q ss_pred cccceeecCCCCCcEEEEcCC
Q 042654 104 WYASNQILPAANDRVILVGGR 124 (270)
Q Consensus 104 WYpT~~tL~D~~GrVliiGG~ 124 (270)
.|..+....| ++|+|+||.
T Consensus 2 r~~hs~~~~~--~kiyv~GG~ 20 (49)
T PF07646_consen 2 RYGHSAVVLD--GKIYVFGGY 20 (49)
T ss_pred ccceEEEEEC--CEEEEECCc
Confidence 3556666778 999999998
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=71.56 E-value=2.8 Score=27.50 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=21.0
Q ss_pred cccccceeecCCCCCcEEEEcCCCC-----ceeEeccCC
Q 042654 102 ARWYASNQILPAANDRVILVGGRGS-----FIYEFVPKL 135 (270)
Q Consensus 102 ~RWYpT~~tL~D~~GrVliiGG~~~-----~t~E~~ppL 135 (270)
+|-+++++.+- ++|+|+||.+. .+.|.|++.
T Consensus 1 pR~~~~~~~~~---~~iyv~GG~~~~~~~~~~v~~yd~~ 36 (47)
T PF01344_consen 1 PRSGHAAVVVG---NKIYVIGGYDGNNQPTNSVEVYDPE 36 (47)
T ss_dssp -BBSEEEEEET---TEEEEEEEBESTSSBEEEEEEEETT
T ss_pred CCccCEEEEEC---CEEEEEeeecccCceeeeEEEEeCC
Confidence 35566666665 59999999853 356777763
No 39
>PF13854 Kelch_5: Kelch motif
Probab=70.24 E-value=4.4 Score=26.69 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCCCcccCceeecCCccEEEEcCcc
Q 042654 209 MPEPRLLNNMLILPTGHILIINGAK 233 (270)
Q Consensus 209 Mp~~R~m~~~vlLPDG~Vli~gGa~ 233 (270)
+|.+|..|.+++. +++++|.||..
T Consensus 1 ~P~~R~~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred CCCCccceEEEEE-CCEEEEEcCcc
Confidence 5889999999987 69999999986
No 40
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=62.81 E-value=10 Score=27.19 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=24.4
Q ss_pred CceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCCCCCce
Q 042654 216 NNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKTLGKVF 262 (270)
Q Consensus 216 ~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~~G~rf 262 (270)
....++||||||++|-...+ ..+..+.-.-|+|.-.+-..|
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~------~~~~~~~l~Rln~DGsLDttF 44 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNS------SGNNDFVLARLNADGSLDTTF 44 (55)
T ss_pred EEEEECCCCcEEEEEEeecC------CCcccEEEEEECCCCCccCCc
Confidence 35679999999999865432 122223344566665544444
No 41
>PLN02772 guanylate kinase
Probab=59.40 E-value=23 Score=35.05 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=42.3
Q ss_pred eeEEEEEcCCCCCchhhhcccccccCCCceeEEEe-cCCCCceee----cCCCCCcccCceeecCCccEEEEcCcc
Q 042654 163 KVKVMVCGGAAAGAYRVAAQGRFLKGLSSCGTMVL-TRNKHVWKM----EHMPEPRLLNNMLILPTGHILIINGAK 233 (270)
Q Consensus 163 ~~~VLv~GG~~~~~~~~~~~~~~~pAs~~~~~I~l-~~~~~~W~~----e~Mp~~R~m~~~vlLPDG~Vli~gGa~ 233 (270)
..|+.|.||.+.+. .+ |..+.+ +.....|.. ..-|.+|--|.+++|-|.++||+.+..
T Consensus 34 gdk~yv~GG~~d~~----------~~---~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 34 GDKTYVIGGNHEGN----------TL---SIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCEEEEEcccCCCc----------cc---cceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 57999999976421 12 322332 334678984 378999999999999999999999764
No 42
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=54.22 E-value=1.2e+02 Score=30.80 Aligned_cols=125 Identities=21% Similarity=0.347 Sum_probs=72.9
Q ss_pred CCceeecc-ccccccccccceeecCCCCCcEEEEcCC-CCceeEeccC------CCC-CCC--CCC-----CCCCCceec
Q 042654 89 HYNWKQLK-WLLSDARWYASNQILPAANDRVILVGGR-GSFIYEFVPK------LSS-SSS--DKN-----CPSSGSSVL 152 (270)
Q Consensus 89 ~~~W~~~~-~~M~~~RWYpT~~tL~D~~GrVliiGG~-~~~t~E~~pp------L~~-T~d--~R~-----yp~sg~svm 152 (270)
+..|.... +.--.+|--+.++..+. |-.+|.||- .+|+-|-|-- |.. |.- .-. -|.||.- |
T Consensus 107 ~~eWkk~~spn~P~pRsshq~va~~s--~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHR-M 183 (521)
T KOG1230|consen 107 KNEWKKVVSPNAPPPRSSHQAVAVPS--NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHR-M 183 (521)
T ss_pred ccceeEeccCCCcCCCccceeEEecc--CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccce-e
Confidence 56787431 11235888899999999 999999996 3455443311 110 000 001 1222322 3
Q ss_pred ccCCcCCCCceeEEEEEcCCCCC--chhhhcccccccCCCceeEEEecCCCCceee-c---CCCCCcccCceeecCCccE
Q 042654 153 LCLDHSNNFRKVKVMVCGGAAAG--AYRVAAQGRFLKGLSSCGTMVLTRNKHVWKM-E---HMPEPRLLNNMLILPTGHI 226 (270)
Q Consensus 153 LPl~~~~~y~~~~VLv~GG~~~~--~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~~-e---~Mp~~R~m~~~vlLPDG~V 226 (270)
.- ++-+++++||-... .| +++ +.....+|. .=+|.. + .-|.+|+-.++.+-|+|.+
T Consensus 184 va-------wK~~lilFGGFhd~nr~y------~Yy---NDvy~FdLd--tykW~Klepsga~PtpRSGcq~~vtpqg~i 245 (521)
T KOG1230|consen 184 VA-------WKRQLILFGGFHDSNRDY------IYY---NDVYAFDLD--TYKWSKLEPSGAGPTPRSGCQFSVTPQGGI 245 (521)
T ss_pred EE-------eeeeEEEEcceecCCCce------EEe---eeeEEEecc--ceeeeeccCCCCCCCCCCcceEEecCCCcE
Confidence 32 56789999997431 11 011 111223332 245663 2 3589999999999999999
Q ss_pred EEEcCccc
Q 042654 227 LIINGAKR 234 (270)
Q Consensus 227 li~gGa~~ 234 (270)
+|-||..+
T Consensus 246 ~vyGGYsK 253 (521)
T KOG1230|consen 246 VVYGGYSK 253 (521)
T ss_pred EEEcchhH
Confidence 99999754
No 43
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=47.18 E-value=14 Score=26.51 Aligned_cols=16 Identities=6% Similarity=0.241 Sum_probs=13.2
Q ss_pred ceeecCCCCCcEEEEcCC
Q 042654 107 SNQILPAANDRVILVGGR 124 (270)
Q Consensus 107 T~~tL~D~~GrVliiGG~ 124 (270)
+.++++| |||||+|-.
T Consensus 5 ~~~~q~D--GkIlv~G~~ 20 (55)
T TIGR02608 5 AVAVQSD--GKILVAGYV 20 (55)
T ss_pred EEEECCC--CcEEEEEEe
Confidence 4677899 999999964
No 44
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=43.33 E-value=57 Score=32.97 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=40.8
Q ss_pred CCCceeec---CCCCCcccCceeecCCccEEEEcCccccC---CCccCCCCCCccceeecCCCCCCCceeecccC
Q 042654 200 NKHVWKME---HMPEPRLLNNMLILPTGHILIINGAKRGS---AGWNNAASLSFRPYLYKPRKTLGKVFSSSLHK 268 (270)
Q Consensus 200 ~~~~W~~e---~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~---aG~~~a~~Pv~~pelYdP~~~~G~rft~~~~~ 268 (270)
.+..|..- .-|-||.-|++|+.|.|.++|.||--..- +.|-+ -.-.+||=.+. +|+++...
T Consensus 106 k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HY-----kD~W~fd~~tr---kweql~~~ 172 (521)
T KOG1230|consen 106 KKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHY-----KDLWLFDLKTR---KWEQLEFG 172 (521)
T ss_pred cccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhh-----hheeeeeeccc---hheeeccC
Confidence 45789843 67889999999999999999999963211 11100 02346676666 77776543
No 45
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.03 E-value=2.3e+02 Score=26.65 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=61.6
Q ss_pred ccccccccccceeecCCCCCcEE-EEcCCCCceeEeccCCCCCCCCCCCCCCCceecccCCcCCCCceeEEEEEcCCCCC
Q 042654 97 WLLSDARWYASNQILPAANDRVI-LVGGRGSFIYEFVPKLSSSSSDKNCPSSGSSVLLCLDHSNNFRKVKVMVCGGAAAG 175 (270)
Q Consensus 97 ~~M~~~RWYpT~~tL~D~~GrVl-iiGG~~~~t~E~~ppL~~T~d~R~yp~sg~svmLPl~~~~~y~~~~VLv~GG~~~~ 175 (270)
+.|-+.|-+.+...+.=..|+|+ ..||..+..+++ +- -+|-..--+.+++-.. ..+.|+++-=.+.+
T Consensus 156 ~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~-~~-------~~f~~QHdar~~~~~~----~~~~IslFDN~~~~ 223 (299)
T PF14269_consen 156 DYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTL-PA-------TNFSWQHDARFLNESN----DDGTISLFDNANSD 223 (299)
T ss_pred cEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccc-cC-------CcEeeccCCEEeccCC----CCCEEEEEcCCCCC
Confidence 45777888888887741127776 457764444554 21 1122222233443221 24567776553221
Q ss_pred chhhhcccccccCCCceeEEEecCCCCcee--ec-----CCCCCcccCceeecCCccEEEEcCcc
Q 042654 176 AYRVAAQGRFLKGLSSCGTMVLTRNKHVWK--ME-----HMPEPRLLNNMLILPTGHILIINGAK 233 (270)
Q Consensus 176 ~~~~~~~~~~~pAs~~~~~I~l~~~~~~W~--~e-----~Mp~~R~m~~~vlLPDG~Vli~gGa~ 233 (270)
.. . ........|.|+..+...+ .+ .--..+.++++-+||+|.+||.=|..
T Consensus 224 ~~-------~-~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~ 280 (299)
T PF14269_consen 224 FN-------G-TEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNN 280 (299)
T ss_pred CC-------C-CcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCC
Confidence 10 0 0111122344544443222 22 23468889999999999999977764
No 46
>PLN02772 guanylate kinase
Probab=34.64 E-value=51 Score=32.74 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=41.7
Q ss_pred CCCCcccCCCeecC---CCcEEEecCCCCCCCceeecc--ccccccccccceeecCCCCCcEEEEcCC
Q 042654 62 FDTDSWCSSVVDMA---SRRIRYFRPCENGHYNWKQLK--WLLSDARWYASNQILPAANDRVILVGGR 124 (270)
Q Consensus 62 v~td~FCsgg~~L~---~~~~r~ydP~~~~~~~W~~~~--~~M~~~RWYpT~~tL~D~~GrVliiGG~ 124 (270)
+...+++=||.... ...+.+||+. +.+|+... ..--.+|==+|+.+|.| .|+||+++-
T Consensus 33 igdk~yv~GG~~d~~~~~~~v~i~D~~---t~~W~~P~V~G~~P~~r~GhSa~v~~~--~rilv~~~~ 95 (398)
T PLN02772 33 IGDKTYVIGGNHEGNTLSIGVQILDKI---TNNWVSPIVLGTGPKPCKGYSAVVLNK--DRILVIKKG 95 (398)
T ss_pred ECCEEEEEcccCCCccccceEEEEECC---CCcEecccccCCCCCCCCcceEEEECC--ceEEEEeCC
Confidence 34556665655443 3578899998 68998532 22335788899999999 999999975
No 47
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=30.99 E-value=42 Score=20.13 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.9
Q ss_pred CcccCceeecCCccEEEEcCcc
Q 042654 212 PRLLNNMLILPTGHILIINGAK 233 (270)
Q Consensus 212 ~R~m~~~vlLPDG~Vli~gGa~ 233 (270)
.+++|.=+++-|++.+++|++.
T Consensus 2 ~~~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 2 DGVLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred CCcEEeEEEEEcCCEEEEeCcc
Confidence 4678888999999999999885
No 48
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=30.97 E-value=43 Score=32.02 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=31.4
Q ss_pred CCcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCC
Q 042654 211 EPRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKT 257 (270)
Q Consensus 211 ~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~ 257 (270)
+--+...+.-||||+|+-+||-.. .|-+..|+|.|-|=+.+
T Consensus 233 ETTvLv~~YtLPDGRvIkvG~ERF------eAPE~LFqP~Li~VE~~ 273 (389)
T KOG0677|consen 233 ETTVLVESYTLPDGRVIKVGGERF------EAPEALFQPHLINVEGP 273 (389)
T ss_pred hheeeeeeeecCCCcEEEecceec------cCchhhcCcceeccCCC
Confidence 344566778899999999999863 46667888988876654
No 49
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.66 E-value=52 Score=32.43 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=43.7
Q ss_pred EEEecCCCCceee-cCCCC-CcccCceeecCCccEEEEcCccccCCCccCCCCCCc--cceeecCCCCCCCceeecc
Q 042654 194 TMVLTRNKHVWKM-EHMPE-PRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSF--RPYLYKPRKTLGKVFSSSL 266 (270)
Q Consensus 194 ~I~l~~~~~~W~~-e~Mp~-~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~--~pelYdP~~~~G~rft~~~ 266 (270)
.++|.+++..|+. ...|- +|--.-+ ..=+|++.+.||...-.. ..|+. ..-.|||..+ .|+.+.
T Consensus 62 ~ldL~~~~k~W~~~a~FpG~~rnqa~~-a~~~~kLyvFgG~Gk~~~-----~~~~~~nd~Y~y~p~~n---sW~kl~ 129 (381)
T COG3055 62 VLDLKKPGKGWTKIADFPGGARNQAVA-AVIGGKLYVFGGYGKSVS-----SSPQVFNDAYRYDPSTN---SWHKLD 129 (381)
T ss_pred ehhhhcCCCCceEcccCCCcccccchh-eeeCCeEEEeeccccCCC-----CCceEeeeeEEecCCCC---hhheec
Confidence 5788889999995 47775 5555544 445899999999864222 11211 3458999999 888763
No 50
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=29.96 E-value=33 Score=27.22 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=10.1
Q ss_pred cCceeecCCccEEEE
Q 042654 215 LNNMLILPTGHILII 229 (270)
Q Consensus 215 m~~~vlLPDG~Vli~ 229 (270)
-..+|+||||++|..
T Consensus 8 ~p~~V~~PdG~~~t~ 22 (90)
T PF06627_consen 8 GPRYVTGPDGSPLTR 22 (90)
T ss_dssp SSSEEE-TTS-EEET
T ss_pred CCceEECCCCCcccc
Confidence 356899999999953
No 51
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.97 E-value=46 Score=31.86 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=29.0
Q ss_pred eeEEEecCCCCceee-cCCC-CCcccCceeecCCc-cEEEEcCcc
Q 042654 192 CGTMVLTRNKHVWKM-EHMP-EPRLLNNMLILPTG-HILIINGAK 233 (270)
Q Consensus 192 ~~~I~l~~~~~~W~~-e~Mp-~~R~m~~~vlLPDG-~Vli~gGa~ 233 (270)
-.+|-+.+....++. ++.+ .+--=|+.+++||| +++|.||.-
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGI 120 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCC
Confidence 356766666655653 3444 35556899999999 888888864
No 52
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=24.71 E-value=1.2e+02 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.348 Sum_probs=0.0
Q ss_pred CceeEE-EecCCC---CceeecCCCCCcccCceeecCCccEEEEcCccccCCCccCCCCCCccceeecCCCC
Q 042654 190 SSCGTM-VLTRNK---HVWKMEHMPEPRLLNNMLILPTGHILIINGAKRGSAGWNNAASLSFRPYLYKPRKT 257 (270)
Q Consensus 190 ~~~~~I-~l~~~~---~~W~~e~Mp~~R~m~~~vlLPDG~Vli~gGa~~G~aG~~~a~~Pv~~pelYdP~~~ 257 (270)
+.|.+| +|..+. |.-..+=+...-.+-..-|||||+-||+||-.. +-.|||=+++
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeas-------------tlsiWDLAap 497 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAS-------------TLSIWDLAAP 497 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccc-------------eeeeeeccCC
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=23.98 E-value=3.1e+02 Score=27.41 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred EEeCCCCc-eEecCCCCCcccCCCeecC--------CCcEEEecCCCCCCCceeeccccccccccccceeecCCCCCcEE
Q 042654 49 EYNILGNK-IRPLRFDTDSWCSSVVDMA--------SRRIRYFRPCENGHYNWKQLKWLLSDARWYASNQILPAANDRVI 119 (270)
Q Consensus 49 ~yDp~T~t-~~pl~v~td~FCsgg~~L~--------~~~~r~ydP~~~~~~~W~~~~~~M~~~RWYpT~~tL~D~~GrVl 119 (270)
+||+.|+. ...+.-..-.+|....-+. ++-+|+|||...++.--.. .-..-.-|-.+.-.-|- -..+
T Consensus 285 ~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~--s~~gH~nwVssvkwsp~--~~~~ 360 (423)
T KOG0313|consen 285 VWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ--SLIGHKNWVSSVKWSPT--NEFQ 360 (423)
T ss_pred EEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE--eeecchhhhhheecCCC--CceE
Q ss_pred EEcCCCCceeEeccCCCCCCCCCCCCCCCceecccCCcCCC------CceeEEEEEcCCC
Q 042654 120 LVGGRGSFIYEFVPKLSSSSSDKNCPSSGSSVLLCLDHSNN------FRKVKVMVCGGAA 173 (270)
Q Consensus 120 iiGG~~~~t~E~~ppL~~T~d~R~yp~sg~svmLPl~~~~~------y~~~~VLv~GG~~ 173 (270)
.++|+.-.+..+|| .|. ..+-|+.+..++. +.+++-++.||++
T Consensus 361 ~~S~S~D~t~klWD-------vRS----~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWD-------VRS----TKAPLYDIAGHNDKVLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred EEEEecCCeEEEEE-------ecc----CCCcceeeccCCceEEEEeccCCceEEeccCc
No 54
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=23.04 E-value=63 Score=19.79 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.6
Q ss_pred cccceeecCCCCCcEEEEcC
Q 042654 104 WYASNQILPAANDRVILVGG 123 (270)
Q Consensus 104 WYpT~~tL~D~~GrVliiGG 123 (270)
+++|..++.| |+|+..|-
T Consensus 8 ~~ht~al~~~--g~v~~wG~ 25 (30)
T PF13540_consen 8 GYHTCALTSD--GEVYCWGD 25 (30)
T ss_dssp SSEEEEEE-T--TEEEEEE-
T ss_pred CCEEEEEEcC--CCEEEEcC
Confidence 6899999999 99999884
No 55
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=22.83 E-value=2e+02 Score=28.93 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred ccccccccCCCCCCCCcCCCCCCcCCCceEeecCCCeeeeEEEeCCCCceEecC------CCCCcccCCCeecC----CC
Q 042654 8 HRCRSHAYGINSPQHCHNATSPIQWNKPSVFEDWSCYAHFVEYNILGNKIRPLR------FDTDSWCSSVVDMA----SR 77 (270)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~gkv~~~~~~~~~a~a~~yDp~T~t~~pl~------v~td~FCsgg~~L~----~~ 77 (270)
.||-|---|-..|--|..-. | =|+.++.+.-|. .+-+||+.|.+-...- |..-.|-+.|..++ ..
T Consensus 105 trCssS~~GH~e~Vl~~~fs-p--~g~~l~tGsGD~--TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFS-P--TGSRLVTGSGDT--TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred ceeccccCCCCCcEEEEEec-C--CCceEEecCCCc--eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 47776555544444443111 1 244555554444 4678999887632221 11223445566665 67
Q ss_pred cEEEecCCCC
Q 042654 78 RIRYFRPCEN 87 (270)
Q Consensus 78 ~~r~ydP~~~ 87 (270)
.|+++||..+
T Consensus 180 ~I~lwdpktg 189 (480)
T KOG0271|consen 180 SIRLWDPKTG 189 (480)
T ss_pred eEEEecCCCC
Confidence 8999999754
No 56
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=21.34 E-value=7.7e+02 Score=24.01 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=61.0
Q ss_pred CCCCCcCCCCCCcCCCceEeecCCCeeeeEEEeCCCCceEecCCCCCcccCCCeecC---------CCcEEEecCCCCCC
Q 042654 19 SPQHCHNATSPIQWNKPSVFEDWSCYAHFVEYNILGNKIRPLRFDTDSWCSSVVDMA---------SRRIRYFRPCENGH 89 (270)
Q Consensus 19 ~~~~~~~~~~~~~~gkv~~~~~~~~~a~a~~yDp~T~t~~pl~v~td~FCsgg~~L~---------~~~~r~ydP~~~~~ 89 (270)
++|.--+|-+|.-=|-|++..+-. ....-+||.|+++....+.+-.-=-+..+-+ ...|+-+||.....
T Consensus 59 p~G~ap~dvapapdG~VWft~qg~--gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~ev 136 (353)
T COG4257 59 PNGSAPFDVAPAPDGAVWFTAQGT--GAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEV 136 (353)
T ss_pred CCCCCccccccCCCCceEEecCcc--ccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccce
Confidence 455555666666677788876443 2345689999999887653221111111111 34788899974333
Q ss_pred Cceeeccccccccccccceeec---CCCCCcEEEEcCCC--------CceeEeccC
Q 042654 90 YNWKQLKWLLSDARWYASNQIL---PAANDRVILVGGRG--------SFIYEFVPK 134 (270)
Q Consensus 90 ~~W~~~~~~M~~~RWYpT~~tL---~D~~GrVliiGG~~--------~~t~E~~pp 134 (270)
..|. |...+-|.-.+++ ++ |++..+|=.. ...+++||.
T Consensus 137 t~f~-----lp~~~a~~nlet~vfD~~--G~lWFt~q~G~yGrLdPa~~~i~vfpa 185 (353)
T COG4257 137 TRFP-----LPLEHADANLETAVFDPW--GNLWFTGQIGAYGRLDPARNVISVFPA 185 (353)
T ss_pred EEee-----cccccCCCcccceeeCCC--ccEEEeeccccceecCcccCceeeecc
Confidence 3453 2334445554444 55 9998887541 234677763
No 57
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=20.51 E-value=28 Score=23.77 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.9
Q ss_pred CCCcccccccc
Q 042654 2 AAPSQQHRCRS 12 (270)
Q Consensus 2 ~~~~~~~~~~~ 12 (270)
..||-||-||.
T Consensus 2 ~v~SLQHLCR~ 12 (42)
T cd03737 2 SVSTLQHLCRK 12 (42)
T ss_pred CcccHHHHHHH
Confidence 45889999985
Done!