Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>042655
NFLLLVKPQIRLCFVTMDFPTRRIFHLIVFSSLLCFQIRAQAEPSGSVFFIDNPTRQFIR
TPSQNDVAQSRSMSLLEVSAAVSVLLGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFML
EVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRKADIQIPDEDQVSVVFLDELSEDRTDKE
IRNFASWLGGSYVADTLEPLNGELIIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRA
VDVHEHLAQSIRRPAELMMGSFDGIKALQEQYGLGQQGMKILLATLSRIFDSLQTAYEGQ
IVGVVFFNETPSPQSESVLNLMYTSRPSPRMLAETEGSRNATLAAAEVLLVRRTLAWLTG
IILIIATLFGIYFLLNMPLTRDTLLYSNVKLD

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042655
        (392 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2093706 - symbol:PMP "AT3G24160" species:3702 ...   832  5.0e-83   1


>TAIR|locus:2093706 [details] [associations]
            symbol:PMP "AT3G24160" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005783 "endoplasmic
            reticulum" evidence=IDA] [GO:0005774 "vacuolar membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0000902 "cell morphogenesis"
            evidence=RCA] [GO:0006623 "protein targeting to vacuole"
            evidence=RCA] [GO:0006816 "calcium ion transport" evidence=RCA]
            [GO:0007030 "Golgi organization" evidence=RCA] [GO:0007033 "vacuole
            organization" evidence=RCA] [GO:0009651 "response to salt stress"
            evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0048193
            "Golgi vesicle transport" evidence=RCA] GO:GO:0005783 GO:GO:0005794
            GO:GO:0005774 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028621
            EMBL:AF104329 EMBL:AY053413 EMBL:AY085022 EMBL:AY133587
            IPI:IPI00547534 PIR:T52336 RefSeq:NP_189058.1 UniGene:At.20418
            PaxDb:Q9ZSJ7 PRIDE:Q9ZSJ7 EnsemblPlants:AT3G24160.1 GeneID:822002
            KEGG:ath:AT3G24160 TAIR:At3g24160 eggNOG:NOG290973
            HOGENOM:HOG000029185 InParanoid:Q9ZSJ7 OMA:AWITGII PhylomeDB:Q9ZSJ7
            ProtClustDB:CLSN2684502 Genevestigator:Q9ZSJ7 Uniprot:Q9ZSJ7
        Length = 364

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 183/372 (49%), Positives = 252/372 (67%)

Query:    23 RIFHLIVFSSLLCFQIRAQAEPSGSVFFIDNPTRQFIRTPSQNDVAQSRXXXXXXXXXXX 82
             + F++ V + LL    R +A  SGSVFFID    Q++R  S ++                
Sbjct:     2 KAFYVFVVALLLTLNYRGEA--SGSVFFIDGSNNQYLRPRSSSEALPM---SPVEISAAV 56

Query:    83 XXXXGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDA 142
                 GFAP A+L+ADGSSKLN++L PNPF+RP A F+LE+ G  D  L     ++ L +A
Sbjct:    57 SALLGFAPSATLTADGSSKLNKILKPNPFERPRAAFVLEIAGADDMLLETSPSHSFLGNA 116

Query:   143 YHSKIIPGPRKADIQIPDEDQVSVVFLDELSEDRTDKEIRNFASWLGGSYVADTLEPLNG 202
               S I     KAD ++PD ++V VV ++E S D TDK+I +FASWLGGSYVA   EP +G
Sbjct:   117 IRSSIKSDSYKADTELPD-NEVVVVSVNEPSSDVTDKDINDFASWLGGSYVAGA-EPSSG 174

Query:   203 ELIIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRAVDVHEHLAQSIRRPAELMMGSF 262
              L IP+A G +V+ ++ K+AE+ FAL LL L QNI++AV V++ L+  I R AEL +G F
Sbjct:   175 LLSIPLAGGANVEFNLEKEAERKFALNLLGLYQNIRQAVSVYDDLSHGIDRTAELTVGRF 234

Query:   263 DGIKALQEQYGLG--QQGMKILLATLSRIFDSLQTAYEGQIVGVVFFNETPSPQSESVLN 320
              GI AL ++YG G  +QGM +LL+TLS++F+ L+T+++GQIVGV+  +E  + +SE++LN
Sbjct:   235 GGIDALAQEYGQGMAKQGMDVLLSTLSKLFNLLETSHKGQIVGVIVLDERVNQESENLLN 294

Query:   321 LMYTSRPSPRMLAETEGSRNATLAAAEVLLVRRTLAWLTGIILIIATLFGIYFLLNMPLT 380
                +SR S R + E EG  +A + A EV+LVR TLAWLTGIIL+IAT+ G+YFL+NMPLT
Sbjct:   295 FG-SSRSSARSMVEVEGIPSAAIIA-EVILVRLTLAWLTGIILLIATILGVYFLMNMPLT 352

Query:   381 RDTLLYSNVKLD 392
             +DTLLYSNVKLD
Sbjct:   353 KDTLLYSNVKLD 364


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      392       377   0.00089  117 3  11 22  0.36    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  212 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.39u 0.10s 30.49t   Elapsed:  00:00:01
  Total cpu time:  30.39u 0.10s 30.49t   Elapsed:  00:00:01
  Start:  Fri May 10 18:27:29 2013   End:  Fri May 10 18:27:30 2013

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