BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042655
(392 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9EVH5|LEU3_BUCUE 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon erigeronensis GN=leuB PE=3 SV=1
Length = 364
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSMSLLEVS---AAVSVLLGFAPPASLS-------- 95
S +IDN Q I+ PSQ DV ++ VS AA++ +G P ASL+
Sbjct: 222 SHLYIDNAIMQIIKDPSQFDVILCSNLFGDIVSDECAAITGSIGMLPSASLNEKNFGLYE 281
Query: 96 -ADGSS-KLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
A GS+ + + NP + +V ML G+ K+ D +D + + S + G R
Sbjct: 282 PAGGSAPDIAGKNIANPIAQILSVSMLVRHGMNLKKIADKIDESVV-----SVLKQGYRT 336
Query: 154 ADI 156
ADI
Sbjct: 337 ADI 339
>sp|P73960|LEU3_SYNY3 3-isopropylmalate dehydrogenase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=leuB PE=3 SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 18/126 (14%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSSKLN 103
S ++DN Q +R+P Q D + ++ L +++A ++ +G P ASL +DG
Sbjct: 221 SHLYVDNAAMQLVRSPRQFDTIVTGNLFGDILSDIAAMLTGSIGMLPSASLGSDGPGLFE 280
Query: 104 EVL----------VPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
V NP + + M+ G+ P+ D L+ DA + G R
Sbjct: 281 PVHGSAPDIAGQDKANPLAQVLSAAMMLRYGLDQPQAADRLE-----DAVKKVLEQGYRT 335
Query: 154 ADIQIP 159
DI P
Sbjct: 336 GDILSP 341
>sp|Q46LE2|LEU3_PROMT 3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain
NATL2A) GN=leuB PE=3 SV=1
Length = 359
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 50 FIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADG 98
++DN Q +R PSQ DV + ++ L +++A ++ +G P ASL+ DG
Sbjct: 222 YVDNAAMQLVRNPSQFDVILTGNLFGDILSDIAAMLTGSIGMLPSASLTTDG 273
>sp|Q9EVG9|LEU3_BUCUM 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon ambrosiae GN=leuB PE=3 SV=1
Length = 365
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSMSLLEVSAAVSVL---LGFAPPASLS-------- 95
S +IDN T Q I+ P+Q D+ ++ VS +++ +G P ASL+
Sbjct: 224 SHLYIDNATMQIIKDPNQFDILLCSNLFGDIVSDECAIITGSIGMLPSASLNEKKFGLYE 283
Query: 96 -ADGSS-KLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
A GS+ + + NP + +V ML G+ K+ D +D + + S + G R
Sbjct: 284 PAGGSAPDIEGKNIANPIAQILSVSMLVRYGMNLKKIADKIDQSVI-----SVLKKGYRT 338
Query: 154 ADI 156
ADI
Sbjct: 339 ADI 341
>sp|Q9K8E9|LEU3_BACHD 3-isopropylmalate dehydrogenase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=leuB PE=3 SV=1
Length = 363
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 22/132 (16%)
Query: 49 FFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSSKLNEV 105
+DN Q IR P Q DV + ++ L + ++ V+ LG P ASL++DG +
Sbjct: 220 MLVDNAAMQLIRRPKQFDVLVTENLFGDILSDEASMVTGSLGMLPSASLTSDGPGLYEPI 279
Query: 106 L----------VPNPFDR--PCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
V NP CA+ + G+ + T + DA + + G R
Sbjct: 280 HGSAPDIAGKGVANPLATIASCAMMLKYSFGLHEEAKT-------IEDAIEAVLKQGYRT 332
Query: 154 ADIQIPDEDQVS 165
ADI P E+ S
Sbjct: 333 ADIAKPGEESSS 344
>sp|Q5KWJ4|LEU3_GEOKA 3-isopropylmalate dehydrogenase OS=Geobacillus kaustophilus (strain
HTA426) GN=leuB PE=3 SV=1
Length = 371
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 49 FFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSS 100
+DN Q IR P Q DV + +M L + ++ +S LG P ASLSA G S
Sbjct: 221 MLVDNAAMQLIRAPKQFDVIVTENMFGDILSDEASMLSGSLGMLPSASLSASGPS 275
>sp|Q2VZV2|LEU3_MAGSA 3-isopropylmalate dehydrogenase OS=Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264) GN=leuB PE=3 SV=1
Length = 369
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 49 FFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLS-ADGSSKLNE 104
++DN Q +R P Q DV + +M L + +A ++ LG P ASL AD K
Sbjct: 223 MYVDNAAMQLVRNPKQFDVMVTENMFGDILSDCAAMLTGSLGMLPSASLGEADAQGKRKA 282
Query: 105 VLVP----------NPFDRPCAVFM---LEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGP 151
+ P P A M + +R D DL T A + + G
Sbjct: 283 LYEPVHGSAPDIAGKDMANPLATIMSFAMCLRYSFDMAAEADLIET----AVKNVLKGGL 338
Query: 152 RKADIQIPDEDQVSVVFLDELSEDRTDK 179
R ADI P + +VS + E DK
Sbjct: 339 RTADIMQPGKAKVSTTVMGEAVVRELDK 366
>sp|Q3JCC4|LEU3_NITOC 3-isopropylmalate dehydrogenase OS=Nitrosococcus oceani (strain
ATCC 19707 / NCIMB 11848) GN=leuB PE=3 SV=1
Length = 362
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSSKLN 103
S ++DN Q +R P Q DV + +M L + +A ++ +G P ASL G
Sbjct: 219 SHMYVDNAAMQLVRAPKQFDVVVTTNMFGDILSDCAAMLTGSIGMLPSASLDQSGRGMYE 278
Query: 104 EVL----------VPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
+ + NP +V M+ + P T+L A + + G R
Sbjct: 279 PIHGSAPDIAGQGIANPLATILSVAMMLRYSLDSPA-----QATRLEKAVGAVLDQGLRT 333
Query: 154 ADIQIPDEDQVS 165
DI P QVS
Sbjct: 334 PDIYSPGTTQVS 345
>sp|A5GJD3|SYP_SYNPW Proline--tRNA ligase OS=Synechococcus sp. (strain WH7803) GN=proS
PE=3 SV=1
Length = 594
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 57 QFIRTPSQNDVAQSRSMSLLEVSAAVSVLL-------GFAPPASLSADGSSKLNEVLVPN 109
+ I TP Q+ + Q + + L+ + V VL+ G P +S G LNEV + N
Sbjct: 255 RMIETPDQSSIEQLCAANGLDPTQTVKVLVLLARLDDGREQPTLVSLRGDQDLNEVKLAN 314
Query: 110 PFDRPCAVFMLEVRGVGDPKLT 131
R +LE+R + + +L
Sbjct: 315 AVSRSLNAAVLEIRPISENQLC 336
>sp|Q31B91|LEU3_PROM9 3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain
MIT 9312) GN=leuB PE=3 SV=1
Length = 357
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADG 98
S ++DN Q +R PSQ DV + ++ L +++A ++ +G P ASL+ +G
Sbjct: 219 SNMYVDNAAMQLVRDPSQFDVILTSNLFGDILSDLAAMLTGSIGMLPSASLNNNG 273
>sp|Q47WG3|LEU3_COLP3 3-isopropylmalate dehydrogenase OS=Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) GN=leuB PE=3 SV=1
Length = 362
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 49 FFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADG 98
++DN Q +R P+Q DV ++ L ++ A ++ +G P ASL++DG
Sbjct: 221 LYVDNAAMQLVRDPNQFDVMLCPNLFGDILSDICAMITGSMGLLPSASLNSDG 273
>sp|Q21IY5|LEU3_SACD2 3-isopropylmalate dehydrogenase OS=Saccharophagus degradans (strain
2-40 / ATCC 43961 / DSM 17024) GN=leuB PE=3 SV=1
Length = 357
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSAD 97
S ++DN Q +R P Q DV + +M L + +A ++ +G P ASL+ D
Sbjct: 219 SHMYVDNAAMQLVRAPKQFDVVVTGNMFGDILSDTAAMLTGSIGMLPSASLNQD 272
>sp|Q2NVW4|LEU3_SODGM 3-isopropylmalate dehydrogenase OS=Sodalis glossinidius (strain
morsitans) GN=leuB PE=3 SV=1
Length = 364
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 28 IVFSSLLCFQIRAQAEP-----SGSVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVS 79
++ SS+L ++ +Q P + S +IDN T Q I+ PSQ DV ++ L +
Sbjct: 199 VLQSSILWRKVVSQVAPDYPDVALSHLYIDNATMQLIKDPSQFDVMLCSNLFGDILSDEC 258
Query: 80 AAVSVLLGFAPPASLSADG 98
A ++ +G P ASL+ G
Sbjct: 259 AMITGSMGMLPSASLNEQG 277
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 173 SEDRTDKEIRNFASWLGG--SYVADTLEPLNGELIIPVADGDHVKLHMSKKAEKDFALKL 230
+ ++TD +RN ASWL G VAD + LI G +++ ++K + + L++
Sbjct: 125 TSEKTDSLLRNGASWLSGLSVVVADEV-----HLIDSPNRGPTLEVTLAKLRKINVNLQI 179
Query: 231 LVLSQNIKRAVDVHEH----LAQSIRRPAELMMGSFDG 264
L LS I A + + L QS RP L G F G
Sbjct: 180 LALSATIGNAKALAKWMDAALVQSEWRPTTLKEGVFYG 217
>sp|Q9EVE1|LEU3_BUCUD 3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp.
Uroleucon rudbeckiae GN=leuB PE=3 SV=1
Length = 363
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 18/123 (14%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLS-------- 95
S +IDN T Q I+ P+Q D+ ++ + + A ++ +G P ASL+
Sbjct: 222 SHLYIDNATMQIIKDPNQFDILLCSNLFGDIISDECAIITGSIGMLPSASLNEKKFGLYE 281
Query: 96 -ADGSS-KLNEVLVPNPFDRPCAVFMLEVRGVGDPKLTDDLDNTQLFDAYHSKIIPGPRK 153
A GS+ + + NP + +V ML G+ + D +D + + S + G R
Sbjct: 282 PAGGSAPDIEGKNIANPIAQILSVSMLVRYGMNLKTIADKIDQSVI-----SVLKKGYRT 336
Query: 154 ADI 156
ADI
Sbjct: 337 ADI 339
>sp|Q7M886|LEU3_WOLSU 3-isopropylmalate dehydrogenase OS=Wolinella succinogenes (strain
ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC
602W) GN=leuB PE=3 SV=1
Length = 358
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSSKLN 103
S +IDN Q IR P Q DV + ++ L + ++ +S +G P AS+ G + L
Sbjct: 215 SHMYIDNAAMQLIRNPKQFDVILTGNLFGDILSDEASMLSGSIGLLPSASIG--GKAALY 272
Query: 104 EVL-----------VPNPFDRPCAVFMLEVRGVGDPKLTDDLDNT---QLFDAYHSKIIP 149
E + + NP + M+ +G+ + D +D L + Y +K I
Sbjct: 273 EPIHGSAPDIAGQGIANPIATIASASMMLRHSLGEVEAADAIDKAIVKTLKEGYRTKDIA 332
Query: 150 GPRKADIQIPDE 161
+I DE
Sbjct: 333 AFGAKEICTTDE 344
>sp|B2J938|HRCA_NOSP7 Heat-inducible transcription repressor HrcA OS=Nostoc punctiforme
(strain ATCC 29133 / PCC 73102) GN=hrcA PE=3 SV=1
Length = 376
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 264 GIKALQEQYGLGQQGMKILLATLSRIFDSLQTAYEGQIVGVVF-----FNETPSPQSESV 318
G KAL E+Y LG + AT+ + L+ + G+++ PS +
Sbjct: 28 GSKALVEEYDLG-----VSSATIRNVMGVLEKS------GLLYQPHASAGRVPSDSGYRI 76
Query: 319 -LNLMYTSRPSPRMLAETEGSRNATLAAAEVLLVRRTLAW--------LTGIILIIATLF 369
++ + T R +++T+ +R TL + +++ L W L G I+ATL
Sbjct: 77 YVDQLITPSLRSRSVSQTDATRTETLGREIEVALQKHLQWEDRSLETLLQGAAQILATLS 136
Query: 370 GIYFLLNMPLTRDTLL 385
G L+ MP T LL
Sbjct: 137 GCISLITMPQTTTALL 152
>sp|Q2SJD6|LEU3_HAHCH 3-isopropylmalate dehydrogenase OS=Hahella chejuensis (strain KCTC
2396) GN=leuB PE=3 SV=1
Length = 360
Score = 31.6 bits (70), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 47 SVFFIDNPTRQFIRTPSQNDVAQSRSM---SLLEVSAAVSVLLGFAPPASLSADGSS 100
S ++DN Q +R P Q DV + +M L + +A ++ +G P ASL+A G
Sbjct: 219 SHMYVDNAAMQLVRAPKQFDVIVTGNMFGDILSDEAAMLTGSIGMLPSASLNAAGKG 275
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,022,283
Number of Sequences: 539616
Number of extensions: 5434458
Number of successful extensions: 14864
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 14849
Number of HSP's gapped (non-prelim): 49
length of query: 392
length of database: 191,569,459
effective HSP length: 119
effective length of query: 273
effective length of database: 127,355,155
effective search space: 34767957315
effective search space used: 34767957315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)