Query 042655
Match_columns 392
No_of_seqs 53 out of 55
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 08:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4737 ATPase membrane sector 100.0 6.3E-44 1.4E-48 342.8 9.0 278 43-389 23-319 (326)
2 PF07850 Renin_r: Renin recept 99.7 2.6E-19 5.7E-24 150.7 -0.2 82 295-389 1-91 (98)
3 PRK14762 membrane protein; Pro 73.1 3.5 7.7E-05 27.6 2.3 19 353-371 2-20 (27)
4 PF01663 Phosphodiest: Type I 61.0 32 0.00068 33.1 7.3 57 254-310 183-244 (365)
5 PF12955 DUF3844: Domain of un 60.2 11 0.00023 32.9 3.4 27 350-377 66-92 (103)
6 PF15330 SIT: SHP2-interacting 32.8 70 0.0015 27.8 4.2 14 378-391 41-54 (107)
7 cd03763 proteasome_beta_type_7 31.5 1.3E+02 0.0028 27.4 6.0 51 254-306 107-179 (189)
8 PF07010 Endomucin: Endomucin; 28.0 75 0.0016 31.6 3.9 28 353-381 193-221 (259)
9 PRK03996 proteasome subunit al 26.8 1.2E+02 0.0027 28.7 5.2 53 253-307 146-219 (241)
10 PF05884 ZYG-11_interact: Inte 24.4 23 0.0005 36.1 -0.3 37 264-300 14-54 (299)
11 cd01949 GGDEF Diguanylate-cycl 23.5 2.1E+02 0.0046 22.9 5.3 22 254-275 31-52 (158)
12 TIGR03633 arc_protsome_A prote 23.3 2E+02 0.0042 27.0 5.7 54 252-307 138-212 (224)
13 KOG0203 Na+/K+ ATPase, alpha s 23.0 1.1E+02 0.0024 35.7 4.6 25 103-127 693-717 (1019)
14 cd03760 proteasome_beta_type_4 22.1 2.9E+02 0.0063 25.3 6.5 52 253-306 113-188 (197)
15 cd03765 proteasome_beta_bacter 21.6 2.8E+02 0.0062 26.9 6.6 55 253-309 122-199 (236)
16 PF06365 CD34_antigen: CD34/Po 21.6 70 0.0015 30.9 2.4 26 351-376 101-126 (202)
17 cd03757 proteasome_beta_type_1 21.1 2.9E+02 0.0062 25.8 6.3 52 253-306 116-198 (212)
No 1
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=100.00 E-value=6.3e-44 Score=342.81 Aligned_cols=278 Identities=20% Similarity=0.251 Sum_probs=231.8
Q ss_pred CCCceEEEEeCCCCccccCCCchhhhhhcccChHHHHHHHHHHhCcCCCCCCCcCccCCCCCccCCCCCCCCceEEEEEE
Q 042655 43 EPSGSVFFIDNPTRQFIRTPSQNDVAQSRSMSLLEVSAAVSVLLGFAPPASLSADGSSKLNEVLVPNPFDRPCAVFMLEV 122 (392)
Q Consensus 43 ~~~gs~~fid~~~~~~lr~~~~~~~~~~~~~s~~ev~~vvSvlLGfsp~~~l~~~~sskw~gllipnpF~RPrAvv~v~V 122 (392)
.+.+|+-|=|++ +.-++ ..|+++....|||+++++++ |+||.+.||||||||+++|.|
T Consensus 23 ~~P~sl~F~~gn-----------~~l~~-----~~i~dv~~~smG~Svk~d~~------w~gl~v~D~F~rpRa~vmV~V 80 (326)
T KOG4737|consen 23 AAPASLKFPDGN-----------ATLKT-----TLISDVNENSMGFSVKEDLS------WPGLAVGDLFHRPRATVMVMV 80 (326)
T ss_pred cCccceecCCCC-----------Ccccc-----eEchhHHHHhhhheeccccC------CCcccccccccCcccEEEEEE
Confidence 467788887765 33333 67899999999999997777 999999999999999999999
Q ss_pred ccCCC-----------CCCCCCccchhhhhhccccCCCCCcccccccCCCCceEEEeccccc-cccchHHHHhhhhhcCC
Q 042655 123 RGVGD-----------PKLTDDLDNTQLFDAYHSKIIPGPRKADIQIPDEDQVSVVFLDELS-EDRTDKEIRNFASWLGG 190 (392)
Q Consensus 123 ~Gvds-----------l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ee~v~v~sl~e~~-~d~t~~~l~~~~s~lgg 190 (392)
.|+|- +++.+++.+|++.|.+++.+.+++ ++..|+.-. +++++++.++. ||. .|+.
T Consensus 81 ~Gvd~~~~~G~v~Sy~l~~~~~~G~Ds~~n~I~~~~~e~~-~vv~~~~~~-~~~~~~~~~e~fdd~--vq~~-------- 148 (326)
T KOG4737|consen 81 KGVDLALPPGSVISYPLENAVPFGLDSVANSIFSLFSEET-PVVLQLAPS-RVYAVGKANEVFDDL--VQLT-------- 148 (326)
T ss_pred eccccccCCCceeeeeccCccCcChhHHHHHHHHHhhhcC-Ceeecccch-hHHHhhhHHHHHHHH--HHHH--------
Confidence 99983 467789999999999999999988 667777433 79999888766 554 3555
Q ss_pred cccCCCcccCCCee-eeecCCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCceEEEEeccHHHHH
Q 042655 191 SYVADTLEPLNGEL-IIPVADGDHVKLHMSKKAEKDFALKLLVLSQNIKRAVDVHEHLAQSIRRPAELMMGSFDGIKALQ 269 (392)
Q Consensus 191 sy~~~~l~~~~~~l-~ipl~~g~s~~L~~skeaD~~Fl~EL~~L~~~I~~~v~~h~dls~~~~~~pdLy~~~f~GlkaL~ 269 (392)
+++++++..+ +.|++ +|.+|+..|++|..|++ .+|+|.-+.+.|+|+ +.++.||+|.....|+.++.
T Consensus 149 ----kr~f~~~e~~a~~pl~-----sl~~~~gv~ll~~ad~q-~l~~ig~l~s~~~hl--ae~a~pd~~s~~~a~~d~I~ 216 (326)
T KOG4737|consen 149 ----KRLFQENELLASYPLN-----SLSRNNGVDLLFLADLQ-VLHDIGSLGSTHKHL--AEDASPDLYSLELAGLDEIG 216 (326)
T ss_pred ----HHhhhhhhhhhhcchh-----hhCcccccchhhhhhhh-hhhhhhhhhhHHHHH--HhhcCccHHHHHHHhHHHHH
Confidence 3778888888 88994 99999999999999996 559999999999999 79999999999999999999
Q ss_pred HHhCCC----hhHHHHHHHHHHHHHHHHHHhhCCcE-EEEEEecCCCCCCccccccccccccCCcchhhhhcCccchhhh
Q 042655 270 EQYGLG----QQGMKILLATLSRIFDSLQTAYEGQI-VGVVFFNETPSPQSESVLNLMYTSRPSPRMLAETEGSRNATLA 344 (392)
Q Consensus 270 ~~YG~~----k~a~~lL~~aL~kl~dsl~~aY~G~i-VgvVt~~~~~~~~~~~~~~~~~~~~r~~R~L~e~~~~~n~~~~ 344 (392)
++||++ .+|.|++..|.+|+.++.+.-|+|.- |... + ++ +.|.+| |.. +.+-.
T Consensus 217 kayGe~sv~~~~A~k~ls~A~~kl~~s~~i~~~~iq~v~t~-~-~t--------------~~r~~R---ea~---~lav~ 274 (326)
T KOG4737|consen 217 KAYGEDSVQFLLASKILSGAAEKLTESREIPNHGIQKVDTK-S-KT--------------PTRLAR---EAL---QLAVP 274 (326)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHhhhCCCCCcEEEEee-c-cc--------------hhHHHH---Hhh---ceeee
Confidence 999999 79999999999999999999998877 5433 2 23 445566 322 23224
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeeeccc
Q 042655 345 AAEVLLVR-RTLAWLTGIILIIATLFGIYFLLNMPLTRDTLLYSNV 389 (392)
Q Consensus 345 ~~~~~~V~-n~llW~t~IiLlvatLl~i~~L~nMdpgRDSIIYr~v 389 (392)
|+.+|+|+ ||++|+ ||+|.++.|..+|.||+|||||||||||=+
T Consensus 275 y~sdYpviFni~Lw~-mvil~lali~i~y~ia~mDPg~DSIIYRMT 319 (326)
T KOG4737|consen 275 YSSDYPVIFNIFLWL-MVILVLALIYIVYGIASMDPGKDSIIYRMT 319 (326)
T ss_pred ccCCccHHHHHHHHH-HHHHHHHHHHHHhhhhccCCCcceeEEEec
Confidence 55556655 999999 799999999999999999999999999943
No 2
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=99.73 E-value=2.6e-19 Score=150.69 Aligned_cols=82 Identities=24% Similarity=0.366 Sum_probs=7.9
Q ss_pred HhhCCcE-EEEEEecCCCCCCccccccccccc-cCCcchhhhhcC------ccchhhhhhHHHHHH-HHHHHHHHHHHHH
Q 042655 295 TAYEGQI-VGVVFFNETPSPQSESVLNLMYTS-RPSPRMLAETEG------SRNATLAAAEVLLVR-RTLAWLTGIILII 365 (392)
Q Consensus 295 ~aY~G~i-VgvVt~~~~~~~~~~~~~~~~~~~-~r~~R~L~e~~~------~~n~~~~~~~~~~V~-n~llW~t~IiLlv 365 (392)
++|+|++ |+++|.... + .+ .|+.|.+.+.++ +.|.+..|+.+|+++ ||++|+ +|+|++
T Consensus 1 ~~y~g~~vve~~t~~s~---------~---~~~~r~~r~~~~~~~~~~~~~~~n~a~~~~~dypviFnIiLW~-~v~l~~ 67 (98)
T PF07850_consen 1 NAYGGNAVVELVTVESF---------D---AELVRSTREILEAKQEKNSRKPYNVAQPYSSDYPVIFNIILWF-SVVLAL 67 (98)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEEeeccC---------c---cceeeecccccccccccccCCccccccccCCCchHHHHHHHHH-HHHHHH
Confidence 5899999 888884422 3 22 566666666555 445544566667766 999999 899988
Q ss_pred HHHHHHHHHhcCCCCCceeeeccc
Q 042655 366 ATLFGIYFLLNMPLTRDTLLYSNV 389 (392)
Q Consensus 366 atLl~i~~L~nMdpgRDSIIYr~v 389 (392)
+.+++||.||||||||||||||-+
T Consensus 68 all~i~~~m~~mDPGrDSIIYRmt 91 (98)
T PF07850_consen 68 ALLAICYAMWNMDPGRDSIIYRMT 91 (98)
T ss_dssp --------------TTTSGGGS--
T ss_pred HHHHHHHHheecCCCCceEEEEec
Confidence 888888899999999999999954
No 3
>PRK14762 membrane protein; Provisional
Probab=73.09 E-value=3.5 Score=27.59 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042655 353 RTLAWLTGIILIIATLFGI 371 (392)
Q Consensus 353 n~llW~t~IiLlvatLl~i 371 (392)
+|++|+.+||+++..|...
T Consensus 2 ki~lw~i~iifligllvvt 20 (27)
T PRK14762 2 KIILWAVLIIFLIGLLVVT 20 (27)
T ss_pred eeHHHHHHHHHHHHHHHHH
Confidence 5899999999977766543
No 4
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=60.99 E-value=32 Score=33.14 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=43.3
Q ss_pred CCceEEEEeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHh-hCCcEEEEEEecCC
Q 042655 254 PAELMMGSFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTA-YEGQIVGVVFFNET 310 (392)
Q Consensus 254 ~pdLy~~~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~a-Y~G~iVgvVt~~~~ 310 (392)
.||++.+.|.+++..+-.||++ .++.+.+-.++.++.+.+.+. ..++..-+|+.+-+
T Consensus 183 ~pdl~~~~~~~~D~~~H~~g~~s~~~~~~~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG 244 (365)
T PF01663_consen 183 RPDLIFVYFPEPDHIGHRYGPDSPEIEDAYRRIDQAIGRLLEALDENGLLEDTNIIVTSDHG 244 (365)
T ss_dssp TESEEEEEEECCHHHHHHH-TTSHHHHHHHHHHHHHHHHHHHHHHHTT-TTTEEEEEEES--
T ss_pred CCCEEEEEecCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEEccCc
Confidence 4999999999999999999998 467777888899999999887 22445445666644
No 5
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=60.16 E-value=11 Score=32.88 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 042655 350 LVRRTLAWLTGIILIIATLFGIYFLLNM 377 (392)
Q Consensus 350 ~V~n~llW~t~IiLlvatLl~i~~L~nM 377 (392)
.=|+.++|+ .|+|++....+|..|++|
T Consensus 66 ~~F~L~~~~-ti~lv~~~~~~I~lL~sv 92 (103)
T PF12955_consen 66 VPFWLFAGF-TIALVVLVAGAIGLLFSV 92 (103)
T ss_pred chhhHHHHH-HHHHHHHHHHHHHHHHHc
Confidence 346899999 599989999999999887
No 6
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.78 E-value=70 Score=27.80 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=10.4
Q ss_pred CCCCceeeeccccC
Q 042655 378 PLTRDTLLYSNVKL 391 (392)
Q Consensus 378 dpgRDSIIYr~vKl 391 (392)
-+.-|.+||.|...
T Consensus 41 ~~~E~~p~YgNL~~ 54 (107)
T PF15330_consen 41 QPTEDDPCYGNLEL 54 (107)
T ss_pred CCCCCCcccccccc
Confidence 45568899999753
No 7
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=31.48 E-value=1.3e+02 Score=27.38 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcE--EEEEE
Q 042655 254 PAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQI--VGVVF 306 (392)
Q Consensus 254 ~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~i--VgvVt 306 (392)
-|.||..+-.| ...|.++|.++ +||.+++..+|.+..+ +..+.|+- |++|+
T Consensus 107 g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~--rd~~~~~~~~v~ii~ 179 (189)
T cd03763 107 GPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIF--NDLGSGSNVDLCVIT 179 (189)
T ss_pred CCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH--hcCcCCCceEEEEEc
Confidence 48999988888 66788899999 8999999999988876 44565554 55555
No 8
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=28.01 E-value=75 Score=31.60 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCCCC
Q 042655 353 RTLAWLTGIILIIATLFGIY-FLLNMPLTR 381 (392)
Q Consensus 353 n~llW~t~IiLlvatLl~i~-~L~nMdpgR 381 (392)
-.|+-+ .|.|++|+|+|.| .-|.=|||+
T Consensus 193 vvIali-Vitl~vf~LvgLyr~C~k~dPg~ 221 (259)
T PF07010_consen 193 VVIALI-VITLSVFTLVGLYRMCWKTDPGT 221 (259)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhhcCCCCC
Confidence 445555 6888899999999 667788874
No 9
>PRK03996 proteasome subunit alpha; Provisional
Probab=26.82 E-value=1.2e+02 Score=28.70 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=41.1
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcE-EEEEEe
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQI-VGVVFF 307 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~i-VgvVt~ 307 (392)
.-|.||.++-.| ...|.++|-++ +||.+++..+|.+..+. ..-++++ |++|+-
T Consensus 146 ~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~--~~~~~~i~i~ii~~ 219 (241)
T PRK03996 146 GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG--KLDPENVEIAYIDV 219 (241)
T ss_pred CcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc--CCCCCcEEEEEEEC
Confidence 469999998888 67788889888 89999999999998764 3444555 666653
No 10
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=24.45 E-value=23 Score=36.06 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.1
Q ss_pred cHHHHHHHhC---CC-hhHHHHHHHHHHHHHHHHHHhhCCc
Q 042655 264 GIKALQEQYG---LG-QQGMKILLATLSRIFDSLQTAYEGQ 300 (392)
Q Consensus 264 GlkaL~~~YG---~~-k~a~~lL~~aL~kl~dsl~~aY~G~ 300 (392)
+.-++.++-| .+ +.+...+.++.+|+...++..|.-.
T Consensus 14 ~~~~~~~~~g~~~~~~~~~i~~v~~~y~~~~~d~~~~~~eg 54 (299)
T PF05884_consen 14 ADPAAAKNAGCTAGEQDASIRDVTRTYSNYGQDLQQYYAEG 54 (299)
T ss_pred cChHHHhccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777 33 7788899999999999999977543
No 11
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=23.52 E-value=2.1e+02 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=19.6
Q ss_pred CCceEEEEeccHHHHHHHhCCC
Q 042655 254 PAELMMGSFDGIKALQEQYGLG 275 (392)
Q Consensus 254 ~pdLy~~~f~GlkaL~~~YG~~ 275 (392)
..-+..+++.+++.+.+.||..
T Consensus 31 ~~~l~~i~i~~~~~i~~~~g~~ 52 (158)
T cd01949 31 PLALLLIDIDHFKQINDTYGHA 52 (158)
T ss_pred eEEEEEEEchhhhHHHHhhChH
Confidence 4568899999999999999976
No 12
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=23.33 E-value=2e+02 Score=27.00 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=40.4
Q ss_pred CCCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcE-EEEEEe
Q 042655 252 RRPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQI-VGVVFF 307 (392)
Q Consensus 252 ~~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~i-VgvVt~ 307 (392)
+.-|.||.+.-.| ..-|.++|=++ +||.++...+|....+ ...=++++ |++|+-
T Consensus 138 ~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~--d~~~~~~i~i~ii~~ 212 (224)
T TIGR03633 138 DGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE--DKLTPENVEVAYITV 212 (224)
T ss_pred CCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc--ccCCCCcEEEEEEEc
Confidence 4479999998888 66788888888 8999999999999776 33333444 666653
No 13
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=23.05 E-value=1.1e+02 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCccCCCCCCCCceEEEEEEccCCC
Q 042655 103 NEVLVPNPFDRPCAVFMLEVRGVGD 127 (392)
Q Consensus 103 ~gllipnpF~RPrAvv~v~V~Gvds 127 (392)
..+.|-.-++|--|+|.|+=+|+++
T Consensus 693 QKLiIVe~cQr~GaiVaVTGDGVND 717 (1019)
T KOG0203|consen 693 QKLIIVEGCQRQGAIVAVTGDGVND 717 (1019)
T ss_pred ceEEeEhhhhhcCcEEEEeCCCcCC
Confidence 4567777799999999999999986
No 14
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.11 E-value=2.9e+02 Score=25.31 Aligned_cols=52 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhCC--C---hhHHHHHHHHHHHHHHHHHHhhCCcE--EEEEE
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYGL--G---QQGMKILLATLSRIFDSLQTAYEGQI--VGVVF 306 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG~--~---k~a~~lL~~aL~kl~dsl~~aY~G~i--VgvVt 306 (392)
.-|.||+.+-.| .-.|.++|-+ + .||.+++..++..+.+- ..+.|.- |++|+
T Consensus 113 ~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~r--d~~~~~~~~i~ii~ 188 (197)
T cd03760 113 GEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYYR--DARSINKYQIAVVT 188 (197)
T ss_pred CCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHh--ccccCCceEEEEEC
Confidence 469999999888 6788999998 7 89999999999888663 3344544 44444
No 15
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.59 E-value=2.8e+02 Score=26.93 Aligned_cols=55 Identities=11% Similarity=0.177 Sum_probs=40.4
Q ss_pred CCCceEEEEecc----HH----------------HHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcEEEEEEecC
Q 042655 253 RPAELMMGSFDG----IK----------------ALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQIVGVVFFNE 309 (392)
Q Consensus 253 ~~pdLy~~~f~G----lk----------------aL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~iVgvVt~~~ 309 (392)
.-|.||+++-.| .+ -|.++|-++ .||.++...+|....+ ...+.|.-|.+++.++
T Consensus 122 ~Gp~LY~idpsG~~~e~~a~~~~~AiG~~~~a~~~Lek~yk~~ms~eeai~la~~al~~a~~--rd~~sg~~iev~vI~k 199 (236)
T cd03765 122 EEPRLFLIYPQGNFIEATPDTPFLQIGETKYGKPILDRVITPDTSLEDAAKCALVSMDSTMR--SNLSVGPPLDLLVYER 199 (236)
T ss_pred CCCEEEEECCCCCEEeecCCCceeeeCCchhhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--hcCCCCCCEEEEEEEC
Confidence 469999999998 33 477888887 8999999999998866 3456666544444443
No 16
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=21.55 E-value=70 Score=30.91 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 042655 351 VRRTLAWLTGIILIIATLFGIYFLLN 376 (392)
Q Consensus 351 V~n~llW~t~IiLlvatLl~i~~L~n 376 (392)
++-+|+=+-+++||++++.++||+|+
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~ 126 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQ 126 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhh
Confidence 44333334257888999999999886
No 17
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.11 E-value=2.9e+02 Score=25.83 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=37.6
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhC---------CC---hhHHHHHHHHHHHHHHHHHHhhCCcE--
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYG---------LG---QQGMKILLATLSRIFDSLQTAYEGQI-- 301 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG---------~~---k~a~~lL~~aL~kl~dsl~~aY~G~i-- 301 (392)
+.|.||..+-.| .--|.++|. ++ .||.+++..+|..+.+ +..+.|+-
T Consensus 116 ~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~--rd~~sg~~i~ 193 (212)
T cd03757 116 GKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAE--RDIYTGDSLE 193 (212)
T ss_pred CCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH--hCcccCCCEE
Confidence 358999988887 456677775 56 8999999999988876 34455555
Q ss_pred EEEEE
Q 042655 302 VGVVF 306 (392)
Q Consensus 302 VgvVt 306 (392)
|++|+
T Consensus 194 i~iit 198 (212)
T cd03757 194 IVIIT 198 (212)
T ss_pred EEEEc
Confidence 55444
Done!