Query 042655
Match_columns 392
No_of_seqs 53 out of 55
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 14:24:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q3q_A Alkaline phosphatase; h 76.4 15 0.00052 38.4 11.0 70 237-310 274-347 (565)
2 2gso_A Phosphodiesterase-nucle 26.4 2.9E+02 0.01 25.9 9.3 57 254-310 159-220 (393)
3 2qn6_B Translation initiation 24.4 98 0.0033 25.0 4.7 37 255-301 51-88 (93)
4 3nkq_A Ectonucleotide pyrophos 20.6 1.8E+02 0.0063 31.6 7.3 59 252-310 262-325 (831)
5 3mtk_A Diguanylate cyclase/pho 17.7 2E+02 0.007 23.5 5.5 22 254-275 36-57 (178)
6 4gtw_A Ectonucleotide pyrophos 16.9 2.9E+02 0.01 29.7 7.8 60 251-310 261-325 (823)
7 3icl_A EAL/ggdef domain protei 16.6 2.4E+02 0.0083 22.5 5.7 23 253-275 29-51 (171)
8 1ryp_H 20S proteasome; multica 16.4 1.9E+02 0.0064 25.2 5.3 52 253-306 115-188 (205)
9 2cyb_A Tyrosyl-tRNA synthetase 14.1 1.7E+02 0.0058 27.9 4.6 41 261-301 279-323 (323)
10 1iru_J 20S proteasome; cell cy 13.2 1.7E+02 0.0057 25.5 4.0 41 266-308 148-193 (205)
No 1
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Probab=76.41 E-value=15 Score=38.42 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred HHHHHHhhhhhhcccCCCCceEEEEeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHhhCCcEEEEEEecCC
Q 042655 237 IKRAVDVHEHLAQSIRRPAELMMGSFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTAYEGQIVGVVFFNET 310 (392)
Q Consensus 237 I~~~v~~h~dls~~~~~~pdLy~~~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~aY~G~iVgvVt~~~~ 310 (392)
..+++.. .++ .++..||++.+.|.+++..+-.||++ +++.+-+-..|.++++.+++.. ++..-+||.+-+
T Consensus 274 A~~~l~~-~~l--~~~~~pdll~vy~~~~D~~gH~~Gp~S~e~~~~l~~lD~~lg~Ll~~l~~~~-~~t~vivtSDHG 347 (565)
T 3q3q_A 274 AAAAIEN-MQL--GKQAQTDIISIGLSATDYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDKDG-IDYVVVLTADHG 347 (565)
T ss_dssp HHHHHHH-TTT--TSSSSCEEEEEEECHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEECSCC
T ss_pred HHHHHHh-ccc--CCCCCCCEEEEEcCCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEEcCCC
Confidence 3344443 345 57779999999999999999999999 6788888899999999998876 677667777744
No 2
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP, hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A 2gsu_A* 2rh6_A*
Probab=26.40 E-value=2.9e+02 Score=25.95 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=47.1
Q ss_pred CCceEEEEeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEecCC
Q 042655 254 PAELMMGSFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTAY-EGQIVGVVFFNET 310 (392)
Q Consensus 254 ~pdLy~~~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~aY-~G~iVgvVt~~~~ 310 (392)
.|.++.+.+..++.....||++ .++.+-+-..+.++.+.|.+.- ..+.+-++|.+-+
T Consensus 159 ~P~fl~~~~~~~d~~~h~~g~~~~~y~~~i~~~D~~ig~ll~~L~~~g~~~nT~vi~tSDHG 220 (393)
T 2gso_A 159 RNRLVTLYFEHVDEAGHDHGPESRQYADAVRAVDAAIGRLLAGMQRDGTRARTNIIVVSDHG 220 (393)
T ss_dssp CEEEEEEEECHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHTCGGGEEEEEECSCC
T ss_pred CCeEEEEecCCCCccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCC
Confidence 6899999999999999999998 5688888899999999998752 1556666777755
No 3
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=24.43 E-value=98 Score=24.98 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=31.3
Q ss_pred CceEEEEeccHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHHhhCCcE
Q 042655 255 AELMMGSFDGIKALQEQYGLG-QQGMKILLATLSRIFDSLQTAYEGQI 301 (392)
Q Consensus 255 pdLy~~~f~GlkaL~~~YG~~-k~a~~lL~~aL~kl~dsl~~aY~G~i 301 (392)
|-+|.++. .++| ++|.++|..++.++.+...+ ++|..
T Consensus 51 aP~Y~i~~---------~~~D~k~ge~~L~~ai~~i~~~i~~-~gG~~ 88 (93)
T 2qn6_B 51 APRYRVDV---------VGTNPKEASEALNQIISNLIKIGKE-ENVDI 88 (93)
T ss_dssp TTEEEEEE---------EESCHHHHHHHHHHHHHHHHHHHHH-TTEEE
T ss_pred CCeEEEEE---------EecCHHHHHHHHHHHHHHHHHHHHH-hCCEE
Confidence 56788888 4678 89999999999999998877 88876
No 4
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=20.62 E-value=1.8e+02 Score=31.57 Aligned_cols=59 Identities=8% Similarity=0.040 Sum_probs=49.1
Q ss_pred CCCCceEEEEeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEecCC
Q 042655 252 RRPAELMMGSFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTAY-EGQIVGVVFFNET 310 (392)
Q Consensus 252 ~~~pdLy~~~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~aY-~G~iVgvVt~~~~ 310 (392)
+..|+++.+.+.+++..+..||++ .++.+-+-..+.++.+.|.+.- ..+.+-+||.+-+
T Consensus 262 ~~~P~f~~ly~~~~D~~gH~~Gp~s~ey~~al~~vD~~IG~Ll~~Lk~~GL~dnT~VI~TSDHG 325 (831)
T 3nkq_A 262 NERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLKLHRCVNVIFVGDHG 325 (831)
T ss_dssp TTCCSEEEEEEEEEHHHHHHHCTTCGGGHHHHHHHHHHHHHHHHHHHHTTCTTTCEEEEEESCC
T ss_pred ccCCceEEEecCCcchhccccCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEcCCC
Confidence 347999999999999999999999 6888889999999999998862 2456667777755
No 5
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}
Probab=17.66 E-value=2e+02 Score=23.54 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.0
Q ss_pred CCceEEEEeccHHHHHHHhCCC
Q 042655 254 PAELMMGSFDGIKALQEQYGLG 275 (392)
Q Consensus 254 ~pdLy~~~f~GlkaL~~~YG~~ 275 (392)
+.-|..+.+.+++.+-+.||.+
T Consensus 36 ~~~l~~idid~f~~in~~~G~~ 57 (178)
T 3mtk_A 36 DTYLIFLEVRDLEKLNVTYGYD 57 (178)
T ss_dssp TEEEEEEEETTHHHHHHHHCHH
T ss_pred ceEEEEEEhhHhhHHHHHhChH
Confidence 6679999999999999999976
No 6
>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*
Probab=16.92 E-value=2.9e+02 Score=29.69 Aligned_cols=60 Identities=5% Similarity=0.011 Sum_probs=47.7
Q ss_pred cCCCCceEEEEeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHhh-CCcEEEEEEecCC
Q 042655 251 IRRPAELMMGSFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTAY-EGQIVGVVFFNET 310 (392)
Q Consensus 251 ~~~~pdLy~~~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~aY-~G~iVgvVt~~~~ 310 (392)
.+..|+++...|...+..+..||++ .++.+-+-..+.++++.|.+.- .++.+-+++.+-+
T Consensus 261 ~~~~P~fl~~y~~~pD~~gH~~Gp~s~e~~~~i~~vD~~IG~ll~~L~~~gl~dnT~VI~tSDHG 325 (823)
T 4gtw_A 261 SHERPHFYTLYLEEPDSSGHSHGPVSSEVIKALQKVDRLVGMLMDGLKDLGLDKCLNLILISDHG 325 (823)
T ss_dssp TTTCCSEEEEEECTTHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEECSCC
T ss_pred ccCCCeEEEECCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEcCCC
Confidence 3458999999999999999999999 5777778889999999998753 2455556666654
No 7
>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}
Probab=16.56 E-value=2.4e+02 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCCceEEEEeccHHHHHHHhCCC
Q 042655 253 RPAELMMGSFDGIKALQEQYGLG 275 (392)
Q Consensus 253 ~~pdLy~~~f~GlkaL~~~YG~~ 275 (392)
.+.-|..+++.+++.+.+.||..
T Consensus 29 ~~~~l~~i~id~f~~in~~~G~~ 51 (171)
T 3icl_A 29 NPVVLLFLDVDNFKSINDSLGHL 51 (171)
T ss_dssp SCCEEEEEEETTHHHHHHHHCHH
T ss_pred CcEEEEEEEChHhhHHHHHhChH
Confidence 36678999999999999999976
No 8
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=16.44 E-value=1.9e+02 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=37.5
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhh-CCcE-EEEEE
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAY-EGQI-VGVVF 306 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY-~G~i-VgvVt 306 (392)
.-|.||..+-.| .-.|.++|-++ .||.++...+|....+. ..| ++++ |++|+
T Consensus 115 ~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~--d~~sg~~i~v~vi~ 188 (205)
T 1ryp_H 115 NKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKW--DGSSGGVIRMVVLT 188 (205)
T ss_dssp TEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHH--BTTCCSCEEEEEEE
T ss_pred CCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHh--CCccCCeEEEEEEc
Confidence 358888876444 46788889887 79999999999877653 356 4555 66555
No 9
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=14.07 E-value=1.7e+02 Score=27.90 Aligned_cols=41 Identities=10% Similarity=0.193 Sum_probs=34.0
Q ss_pred EeccHHHHHHHhCCC----hhHHHHHHHHHHHHHHHHHHhhCCcE
Q 042655 261 SFDGIKALQEQYGLG----QQGMKILLATLSRIFDSLQTAYEGQI 301 (392)
Q Consensus 261 ~f~GlkaL~~~YG~~----k~a~~lL~~aL~kl~dsl~~aY~G~i 301 (392)
+...+++|.+.|..+ .+.++.|.+++.+++.-.++.|.-++
T Consensus 279 ~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~l~pir~~~~~~~ 323 (323)
T 2cyb_A 279 EYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLGVSV 323 (323)
T ss_dssp EESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 556899999999764 79999999999999999999997553
No 10
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=13.22 E-value=1.7e+02 Score=25.48 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=29.0
Q ss_pred HHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhh-CCcE-EEEEEec
Q 042655 266 KALQEQYGLG---QQGMKILLATLSRIFDSLQTAY-EGQI-VGVVFFN 308 (392)
Q Consensus 266 kaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY-~G~i-VgvVt~~ 308 (392)
-.|.++|-++ .||.++...+|....+ ...+ ++++ |.+|+-+
T Consensus 148 ~~Le~~~~~~~s~eea~~l~~~al~~~~~--~d~~s~~~i~v~vi~~~ 193 (205)
T 1iru_J 148 GMCESLWEPNMDPDHLFETISQAMLNAVD--RDAVSGMGVIVHIIEKD 193 (205)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHHHHHHHGG--GBTTSCSCEEEEEEESS
T ss_pred HHHhcccCCCCCHHHHHHHHHHHHHHHHH--hCcccCCceEEEEEcCC
Confidence 4677788887 7899999999987665 3456 4566 6666543
Done!