Query 042655
Match_columns 392
No_of_seqs 53 out of 55
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 14:25:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042655.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042655hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w25a3 d.58.29.2 (A:294-455) 30.7 53 0.0038 24.8 6.4 37 235-275 12-48 (162)
2 d1j2pa_ d.153.1.4 (A:) Proteas 28.0 25 0.0019 29.8 4.3 58 249-308 136-214 (243)
3 d1cjaa_ d.144.1.3 (A:) Actin-f 15.8 43 0.0031 31.0 3.2 44 42-92 78-121 (342)
4 d1rypk_ d.153.1.4 (K:) Proteas 15.2 73 0.0053 25.5 4.3 53 253-307 112-186 (198)
5 d1wc1a_ d.58.29.1 (A:) Adenyla 13.6 2E+02 0.015 22.1 6.7 47 255-303 8-54 (197)
6 d1rypi_ d.153.1.4 (I:) Proteas 12.8 1E+02 0.0074 25.3 4.7 42 265-308 135-181 (222)
7 d2qn6b1 d.58.51.1 (B:176-264) 12.7 2.4E+02 0.018 20.5 6.6 38 254-301 48-86 (89)
8 d1rypl_ d.153.1.4 (L:) Proteas 12.5 1.4E+02 0.01 24.1 5.4 54 253-308 108-181 (212)
9 d1q8ka2 d.58.51.1 (A:186-302) 11.8 1.3E+02 0.0092 23.4 4.6 37 255-301 46-83 (117)
10 d1j2qh_ d.153.1.4 (H:) Proteas 11.7 1E+02 0.0075 24.3 4.2 39 266-306 138-181 (202)
No 1
>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}
Probab=30.71 E-value=53 Score=24.82 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhhhhcccCCCCceEEEEeccHHHHHHHhCCC
Q 042655 235 QNIKRAVDVHEHLAQSIRRPAELMMGSFDGIKALQEQYGLG 275 (392)
Q Consensus 235 ~~I~~~v~~h~dls~~~~~~pdLy~~~f~GlkaL~~~YG~~ 275 (392)
+.+.+.+..+.. ...+.-|..+++.+++.|.+.||..
T Consensus 12 ~~l~~~l~~~~~----~~~~~~l~~i~id~~~~in~~~G~~ 48 (162)
T d1w25a3 12 GQLDSLVKRATL----GGDPVSALLIDIDFFKKINDTFGHD 48 (162)
T ss_dssp HHHHHHHHHHHT----SSCCCEEEEEEETTHHHHHHHSCHH
T ss_pred HHHHHHHHHHHh----cCCCEEEEEeccccchhcccccccc
Confidence 444444544332 2346679999999999999999986
No 2
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.97 E-value=25 Score=29.79 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=44.2
Q ss_pred cccCCCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcE-EEEEEe
Q 042655 249 QSIRRPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQI-VGVVFF 307 (392)
Q Consensus 249 ~~~~~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~i-VgvVt~ 307 (392)
++.|+.|.||...-.| ...|+++|-++ ++|.++...+|....+. ..-.+++ |++|+.
T Consensus 136 ~G~D~~p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~y~~~ms~eeai~la~~~l~~~~~~--d~~~~~iei~iv~~ 213 (243)
T d1j2pa_ 136 AGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES--ELVPENIEVGYVKV 213 (243)
T ss_dssp EEESSSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS--CCCGGGEEEEEEET
T ss_pred EEecCCceEEEEeccCceeeeeEEEeCCCcHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhc--ccCCCceEEEEEEe
Confidence 3567788999876554 56788999888 89999999999887764 3444678 887775
Q ss_pred c
Q 042655 308 N 308 (392)
Q Consensus 308 ~ 308 (392)
+
T Consensus 214 ~ 214 (243)
T d1j2pa_ 214 D 214 (243)
T ss_dssp T
T ss_pred C
Confidence 5
No 3
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}
Probab=15.77 E-value=43 Score=31.02 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=35.6
Q ss_pred cCCCceEEEEeCCCCccccCCCchhhhhhcccChHHHHHHHHHHhCcCCCC
Q 042655 42 AEPSGSVFFIDNPTRQFIRTPSQNDVAQSRSMSLLEVSAAVSVLLGFAPPA 92 (392)
Q Consensus 42 ~~~~gs~~fid~~~~~~lr~~~~~~~~~~~~~s~~ev~~vvSvlLGfsp~~ 92 (392)
-.+++.||||++..-..+=.+|+. +..+-+...++-.||+.+|.
T Consensus 78 ~~Gs~Gv~FV~~e~gaiVlK~s~t-------ta~E~y~~eLAr~LGvpvPq 121 (342)
T d1cjaa_ 78 EKGTEGLFFVETESGVFIVKRSTN-------IESETFCSLLCMRLGLHAPK 121 (342)
T ss_dssp CSTTSCEEEEEESSCEEEEECCTT-------HHHHHHHHHHHHHHTCCCCC
T ss_pred ecCCceEEEEEcCCceEEEecCCc-------hHHHHHHHHHHHHhCCCCCc
Confidence 346778999999988888877774 23388999999999998873
No 4
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.17 E-value=73 Score=25.53 Aligned_cols=53 Identities=17% Similarity=0.269 Sum_probs=36.7
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCC-cE-EEEEEe
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEG-QI-VGVVFF 307 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G-~i-VgvVt~ 307 (392)
+-|.||..+-.| ...|.++|-++ +||.+++..+++.+...- .|.| ++ |.+|+-
T Consensus 112 ~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~eea~~l~~~~l~~~~~~d--~~s~~~~~v~vi~~ 186 (198)
T d1rypk_ 112 NKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRM--PMDFKGVIVKIVDK 186 (198)
T ss_dssp TEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHC--SBCCCCEEEEEEET
T ss_pred CceEEEEecccccEEecceEEEeccchhhHHHHHhcccccCCHHHHHHHHHHHHHHHHHhc--CcCCCcEEEEEEcC
Confidence 357788776543 23477889888 899999999998776653 4555 45 666653
No 5
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}
Probab=13.61 E-value=2e+02 Score=22.10 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=34.4
Q ss_pred CceEEEEeccHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHhhCCcEEE
Q 042655 255 AELMMGSFDGIKALQEQYGLGQQGMKILLATLSRIFDSLQTAYEGQIVG 303 (392)
Q Consensus 255 pdLy~~~f~GlkaL~~~YG~~k~a~~lL~~aL~kl~dsl~~aY~G~iVg 303 (392)
-.++...+.|.-.+.+.+++ ++..+++.+....+.+.+ ..|+|.++-
T Consensus 8 vtvlF~Di~gfT~l~~~~~~-~~~~~~l~~~~~~~~~~i-~~~~G~v~k 54 (197)
T d1wc1a_ 8 ITILFSDIVGFTRMSNALQS-QGVAELLNEYLGEMTRAV-FENQGTVDK 54 (197)
T ss_dssp EEEEEEEETTHHHHHHHSCH-HHHHHHHHHHHHHHHHHH-HHTTCEEEE
T ss_pred EEEEEEEeCCHHHHHHhCCH-HHHHHHHHHHHHHHHhhH-hhhhhhcee
Confidence 34788899999999999886 456677777666555555 469998753
No 6
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.77 E-value=1e+02 Score=25.30 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhC-CcE-EEEEEec
Q 042655 265 IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYE-GQI-VGVVFFN 308 (392)
Q Consensus 265 lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~-G~i-VgvVt~~ 308 (392)
.-.|.++|-++ .||.++...+|....+ ...+. |++ |++|+-+
T Consensus 135 ~~~Le~~~k~~ms~eea~~l~~~al~~a~~--~D~~sg~~i~i~vi~~~ 181 (222)
T d1rypi_ 135 MAVLESHWKQDLTKEEAIKLASDAIQAGIW--NDLGSGSNVDVCVMEIG 181 (222)
T ss_dssp HHHHHHHCCSSCCHHHHHHHHHHHHHHHHH--HCTTCCSCEEEEEEETT
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhc--ccCCCCCcEEEEEEEcC
Confidence 45688889888 8999999999988873 34554 446 7666544
No 7
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.74 E-value=2.4e+02 Score=20.45 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCceEEEEeccHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHHhhCCcE
Q 042655 254 PAELMMGSFDGIKALQEQYGLG-QQGMKILLATLSRIFDSLQTAYEGQI 301 (392)
Q Consensus 254 ~pdLy~~~f~GlkaL~~~YG~~-k~a~~lL~~aL~kl~dsl~~aY~G~i 301 (392)
-|-.|.++. .++| ++|.++|..+++.+.+. .+.++|.+
T Consensus 48 gaP~Yri~v---------~a~D~k~ae~~l~~a~~~i~~~-ik~~gg~~ 86 (89)
T d2qn6b1 48 GAPRYRVDV---------VGTNPKEASEALNQIISNLIKI-GKEENVDI 86 (89)
T ss_dssp STTEEEEEE---------EESCHHHHHHHHHHHHHHHHHH-HHHTTEEE
T ss_pred cCCeEEEEE---------EeCCHHHHHHHHHHHHHHHHHH-HHHhCCEE
Confidence 456788888 4678 89999999999988875 45566765
No 8
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.53 E-value=1.4e+02 Score=24.06 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCceEEEEecc-----------------HHHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCcEEEEEEec
Q 042655 253 RPAELMMGSFDG-----------------IKALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQIVGVVFFN 308 (392)
Q Consensus 253 ~~pdLy~~~f~G-----------------lkaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~iVgvVt~~ 308 (392)
+-|.||..+-.| .-.|.++|-++ .||.+++..+|.... ....+.|+-|.+.+.+
T Consensus 108 ~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l~~~al~~~~--~rd~~sg~~v~v~vi~ 181 (212)
T d1rypl_ 108 EGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAA--HRDAYSGGSVNLYHVT 181 (212)
T ss_dssp TEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH--HHBTTCCSEEEEEEEE
T ss_pred CCCEEEEECCCceEEecceEEEccCcccchhHHHHhccCCCCHHHHHHHHHHHHHHHH--HhcCCCCCceEEEEEc
Confidence 346787766544 34578889888 899999999999776 3456766664444444
No 9
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.81 E-value=1.3e+02 Score=23.40 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.1
Q ss_pred CceEEEEeccHHHHHHHhCCC-hhHHHHHHHHHHHHHHHHHHhhCCcE
Q 042655 255 AELMMGSFDGIKALQEQYGLG-QQGMKILLATLSRIFDSLQTAYEGQI 301 (392)
Q Consensus 255 pdLy~~~f~GlkaL~~~YG~~-k~a~~lL~~aL~kl~dsl~~aY~G~i 301 (392)
|-+|.++. ..+| +.|.++|..++..+.....+ ++|.+
T Consensus 46 aP~Y~i~v---------~a~D~k~g~~~l~~a~~~i~~~I~~-~gG~f 83 (117)
T d1q8ka2 46 PPRYVMTT---------TTLERTEGLSVLSQAMAVIKEKIEE-KRGVF 83 (117)
T ss_dssp TTEEEEEE---------ECSSHHHHHHHHHHHHHHHHHHHHT-TSCEE
T ss_pred CCeEEEEE---------ecCCHHHHHHHHHHHHHHHHHHHHH-cCCEE
Confidence 44666666 3566 88999999999999998887 79987
No 10
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=11.72 E-value=1e+02 Score=24.34 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHhhCCc-E-EEEEE
Q 042655 266 KALQEQYGLG---QQGMKILLATLSRIFDSLQTAYEGQ-I-VGVVF 306 (392)
Q Consensus 266 kaL~~~YG~~---k~a~~lL~~aL~kl~dsl~~aY~G~-i-VgvVt 306 (392)
..|.++|-++ +||.+++..+|....+. ..+.|. + |++|+
T Consensus 138 ~~Le~~~~~~ms~~ea~~l~~~al~~~~~~--d~~~g~~v~v~~i~ 181 (202)
T d1j2qh_ 138 GVLEDRFTPEIGVDEAVELAVRAIYSAMKR--DSASGDGIDVVKIT 181 (202)
T ss_dssp HHHHHHCCTTCCHHHHHHHHHHHHHHHHTT--CTTSCSCEEEEEEC
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHh--cCCCCCeEEEEEEE
Confidence 4578889888 89999999999887753 344454 5 55443
Done!