BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042656
         (289 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
           Lanata
 pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
           Lanata In Complex With Nadp
          Length = 364

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/276 (34%), Positives = 151/276 (54%), Gaps = 20/276 (7%)

Query: 24  RSLHNSLLP-------LAVHTNICKYQGLPFRYFGQLIGHDPPFKEDSVRLPFPNFYYAV 76
           R++ ++++P       +++ T    Y G PF  +G++  HDPP+ ED  RL + NFYY +
Sbjct: 99  RNVLDAVIPNCPNLKHISLQTGRKHYMG-PFESYGKIESHDPPYTEDLPRLKYMNFYYDL 157

Query: 77  EDIA---ASYSPAVTYSVHXXXXXXXXXXXXXXXXXXXXAVYATICRHQGLPFRYLAIHG 133
           EDI          +T+SVH                     VYA IC+H+G   R+     
Sbjct: 158 EDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRF----- 212

Query: 134 SSLSGNKYTWEHFCDMSDSRVLAEQQIWAATTDRAKNQAFNCTNGDVFTWKSLWKLLSEI 193
              +G K  W+ + D SD+ ++AE  IWAA    AKN+AFN +NGDVF WK  WK+L+E 
Sbjct: 213 ---TGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQ 269

Query: 194 FDVEFVPFDEKEKFDVVEMMEEKGEIWDEIVEKHGLYKTKMEEITCFEALNTVLHLQFQH 253
           F VE   ++E     + ++M+ K  +W+EIV ++GL  TK++++  +   + +L  +   
Sbjct: 270 FGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNEC-F 328

Query: 254 VSSMNKSREFGFFGFVDTMKSIRTWVKKLREMKIIP 289
           + SMNKS+E GF GF ++  +  +W+ K +  KI+P
Sbjct: 329 LDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 364


>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
 pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
           From Rhizobium Species Strain Nt-26
          Length = 175

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 14/72 (19%)

Query: 115 YATICRHQGLPFRYLAIHGSSLSGNKYTWE---HFCDMSDSRVLAEQQIWAATTDRAKNQ 171
           ++TIC H+G P  Y        S +  T+    HF      +    QQ+W   T      
Sbjct: 99  FSTICPHKGFPLSY--------SADNKTFNCPGHFSVFDPEK--GGQQVWGQATQNLPQY 148

Query: 172 AFNCT-NGDVFT 182
                 NGD+F 
Sbjct: 149 VLRVADNGDIFA 160


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,408,454
Number of Sequences: 62578
Number of extensions: 323082
Number of successful extensions: 819
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 814
Number of HSP's gapped (non-prelim): 3
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)