BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042656
(289 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STX2|VEP1_ARATH 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Arabidopsis thaliana
GN=VEP1 PE=1 SV=1
Length = 388
Score = 204 bits (519), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 163/279 (58%), Gaps = 19/279 (6%)
Query: 20 GASSRSLHNSLLPLAVH-TNICKYQGLPFRYFGQLIG-----HDPPFKEDSVRLPFPNFY 73
G+ R++ +++P A + ++C G Y G HDPPF ED RL NFY
Sbjct: 120 GSMLRNVLQAIIPYAPNLRHVCLQTGTK-HYLGPFTNVDGPRHDPPFTEDMPRLQIQNFY 178
Query: 74 YAVEDI---AASYSPAVTYSVHRSSIIIGASSRSLNNSLLTLAVYATICRHQGLPFRYLA 130
Y EDI VT+S+HR ++I G S SL N + TL VYA IC+H+G P +
Sbjct: 179 YTQEDILFEEIKKIETVTWSIHRPNMIFGFSPYSLMNIVGTLCVYAAICKHEGSPLLF-- 236
Query: 131 IHGSSLSGNKYTWEHFCDMSDSRVLAEQQIWAATTDRAKNQAFNCTNGDVFTWKSLWKLL 190
G+K WE F SD+ ++AEQQIWAA AKN+AFNC N D+F WK LWK+L
Sbjct: 237 ------PGSKKAWEGFMTASDADLIAEQQIWAAVDPYAKNEAFNCNNADIFKWKHLWKIL 290
Query: 191 SEIFDVEFVPFDEKEKFDVVEMMEEKGEIWDEIVEKHGLYKTKMEEITCFEALNTVLHLQ 250
+E F +E F+E + +VEMM+ K +W+E+V+++ L + K+EE+ + + +L ++
Sbjct: 291 AEQFGIEEYGFEEGKNLGLVEMMKGKERVWEEMVKENQLQEKKLEEVGVWWFADVILGVE 350
Query: 251 FQHVSSMNKSREFGFFGFVDTMKSIRTWVKKLREMKIIP 289
+ SMNKS+E+GF GF ++ S +W+ K + KI+P
Sbjct: 351 -GMIDSMNKSKEYGFLGFRNSNNSFISWIDKYKAFKIVP 388
>sp|Q6PQJ9|5BPOR_DIGLA 3-oxo-Delta(4,5)-steroid 5-beta-reductase OS=Digitalis lanata PE=1
SV=1
Length = 389
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 160/276 (57%), Gaps = 20/276 (7%)
Query: 24 RSLHNSLLP-------LAVHTNICKYQGLPFRYFGQLIGHDPPFKEDSVRLPFPNFYYAV 76
R++ ++++P +++ T Y G PF +G++ HDPP+ ED RL + NFYY +
Sbjct: 124 RNVLDAVIPNCPNLKHISLQTGRKHYMG-PFESYGKIESHDPPYTEDLPRLKYMNFYYDL 182
Query: 77 EDI---AASYSPAVTYSVHRSSIIIGASSRSLNNSLLTLAVYATICRHQGLPFRYLAIHG 133
EDI +T+SVHR I G S S+ N + TL VYA IC+H+G R+
Sbjct: 183 EDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRF----- 237
Query: 134 SSLSGNKYTWEHFCDMSDSRVLAEQQIWAATTDRAKNQAFNCTNGDVFTWKSLWKLLSEI 193
+G K W+ + D SD+ ++AE IWAA AKN+AFN +NGDVF WK WK+L+E
Sbjct: 238 ---TGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQ 294
Query: 194 FDVEFVPFDEKEKFDVVEMMEEKGEIWDEIVEKHGLYKTKMEEITCFEALNTVLHLQFQH 253
F V ++E + ++M+ K +W+EIV ++GL TK++++ + + +L +
Sbjct: 295 FGVGCGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNEC-F 353
Query: 254 VSSMNKSREFGFFGFVDTMKSIRTWVKKLREMKIIP 289
+ SMNKS+E GF GF ++ + +W+ K + KI+P
Sbjct: 354 LDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP 389
>sp|O74913|YJ72_SCHPO Uncharacterized protein C757.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC757.02c PE=4 SV=1
Length = 405
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 125/289 (43%), Gaps = 56/289 (19%)
Query: 47 FRYFGQLIGH-DPPFKEDSVRLP-----FPNFYYAVEDIAASYSPAVT--YSVHRSSIII 98
+++G +G P E +R+P PNFYY EDI +S Y++ + I
Sbjct: 125 LKFYGLHLGEVRLPMIETDIRVPETFSGTPNFYYVQEDILKEFSNGKKWDYTIAMPNDIC 184
Query: 99 GASSRSLNNSLLTLAVYATICRHQGLPFRYLAIHGSSLSGNKYTWEHFCDMSDSRVLAEQ 158
G S S N T+A+YA +CR PFR+ GN+ + F D+S S+++A+
Sbjct: 185 GVSKGSYMNEAFTIALYALVCRELHEPFRF--------PGNEKFYLGFDDISYSKLIADF 236
Query: 159 QIWAATTDRAKNQAFNCTNGDVFTWKSLWKLLSEIFDVEFVPFD---------------- 202
Q+W + FN NGD+ +W W ++E F VE VP +
Sbjct: 237 QLWMTFKAECSEEKFNIVNGDIHSWSRTWPKIAEYFGVE-VPKNQFATDFTLSTEVTLST 295
Query: 203 -------EKE-------------KFDVVEMMEEKG--EIWDEIVEKHGLYKTKMEEITCF 240
EKE + + + +++K + W I E+ L + E+ +
Sbjct: 296 PSPINLYEKELGIKHTPNSKIINQISLQQWVKQKKVQDAWRTIAEREKLNAHAL-EVGTW 354
Query: 241 EALNTVLHLQFQHVSSMNKSREFGFFGFVDTMKSIRTWVKKLREMKIIP 289
+ + + +SSM+K+R+ G+ + DT + +L++ K IP
Sbjct: 355 AFCDFLFGRTYNVISSMSKARKLGYTDYYDTFDGFKETFDELKKQKQIP 403
>sp|A8LE09|PYRB_FRASN Aspartate carbamoyltransferase OS=Frankia sp. (strain EAN1pec)
GN=pyrB PE=3 SV=1
Length = 309
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 26 LHNSLLPLAVHTNICKYQGLPFRYFGQLIGHDPP--FKEDSVRLPFPNFYYAVEDIAASY 83
L ++LL L + + P R L G F EDS R +F A + ++A
Sbjct: 12 LDDALLVLDTADRMARVADAPVRKLPTLRGRTVVNLFFEDSTRT-RTSFEVAAKRLSADV 70
Query: 84 SPAVTYSVHRSSIIIGASSRSLNNSLLTLAVYATICRH--QGLPFRYLA-IHGSSLSGNK 140
+ +S SS+ G S + +L + A +CRH G P R + + GS ++
Sbjct: 71 ---INFSARGSSVSKGESLKDTAQTLEAMGADAVVCRHPASGAPHRLASWVRGSVVNAGD 127
Query: 141 YTWEH 145
T EH
Sbjct: 128 GTHEH 132
>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cft1 PE=3 SV=1
Length = 1441
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 11/122 (9%)
Query: 151 DSRVLAEQQIWAATTDRAKNQAFNCTNGDVFTWKSLWKLLSEIF---DVEFVPFDEKEKF 207
D L + I A TD K + +N + + ++ L +F + E F+++
Sbjct: 790 DQESLEKHPILFALTDEGKLKVYNLADFSLLMECDVFDLPPTLFNGMESERTYFNKESSQ 849
Query: 208 DVVEMMEEKGEIWDEIVEKHGLYKTKMEEITCFEAL---NTVLH---LQFQHVSSMNKSR 261
++VE++ ++ D+ E H ++++ EIT ++A NT H L F V +R
Sbjct: 850 ELVELL--VADLGDDFKEPHLFLRSRLNEITVYKAFLYSNTDKHKNLLAFAKVPQETMTR 907
Query: 262 EF 263
EF
Sbjct: 908 EF 909
>sp|Q2J833|PYRB_FRASC Aspartate carbamoyltransferase OS=Frankia sp. (strain CcI3) GN=pyrB
PE=3 SV=1
Length = 318
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 60 FKEDSVRLPFPNFYYAVEDIAASYSPAVTYSVHRSSIIIGASSRSLNNSLLTLAVYATIC 119
F EDS R +F A + ++A + +S SS+ G S + +L + A +C
Sbjct: 60 FFEDSTR-TRTSFEVAAKRLSADV---INFSARGSSVSKGESLKDTAQTLEAMGADAVVC 115
Query: 120 RH--QGLPFRYLA-IHGSSLSGNKYTWEH 145
RH G P R + + GS ++ T EH
Sbjct: 116 RHAASGAPHRLASWVRGSVVNAGDGTHEH 144
>sp|Q0RF77|PYRB_FRAAA Aspartate carbamoyltransferase OS=Frankia alni (strain ACN14a)
GN=pyrB PE=3 SV=1
Length = 318
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 60 FKEDSVRLPFPNFYYAVEDIAASYSPAVTYSVHRSSIIIGASSRSLNNSLLTLAVYATIC 119
F EDS R +F A + ++A + +S SS+ G S + +L + A +C
Sbjct: 60 FFEDSTR-TRTSFEVAAKRLSADV---INFSARGSSVSKGESLKDTAQTLEAMGADAVVC 115
Query: 120 RH--QGLPFRYLA-IHGSSLSGNKYTWEH 145
RH G P R + GS ++ T EH
Sbjct: 116 RHSASGAPHRLATWVRGSVVNAGDGTHEH 144
>sp|Q9FK29|UBC33_ARATH Probable ubiquitin-conjugating enzyme E2 33 OS=Arabidopsis thaliana
GN=UBC33 PE=2 SV=1
Length = 243
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 19/158 (12%)
Query: 43 QGLPFR---YFGQL-IGHDPPFKEDSVRLPFPNFYYAVEDI---------AASYSPAVTY 89
+G PF Y+G++ + P+K + + PN + + S++P +
Sbjct: 45 EGTPFAGGFYYGKIKFPPEYPYKPPGITMTTPNGRFVTQKKICLSMSDFHPESWNP--MW 102
Query: 90 SVHRSSIIIGASSRSLNNSLLTLAVYATICRHQGLPFRYLAIHGSSLSGNKYTWEHFCDM 149
SV SSI+ G S ++NS T +V ++ Q L LA + S++ K E+
Sbjct: 103 SV--SSILTGLLSFMMDNSPTTGSVNTSVAEKQRLAKSSLAFNCKSVTFRKLFPEYVEKY 160
Query: 150 SDSRVLAEQQIWAATTDRAKNQAF-NCTNGDVFTWKSL 186
S +V AE++ T ++NQ F N V + KS+
Sbjct: 161 SQQQV-AEEEAATQQTTTSENQDFPQKDNAKVESEKSV 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,318,321
Number of Sequences: 539616
Number of extensions: 4372928
Number of successful extensions: 10103
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10088
Number of HSP's gapped (non-prelim): 12
length of query: 289
length of database: 191,569,459
effective HSP length: 116
effective length of query: 173
effective length of database: 128,974,003
effective search space: 22312502519
effective search space used: 22312502519
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)