BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042660
(261 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 87 FTGRIVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
F+G I+P L ++LQ L L NN F G IP +++ L L+LS N G P +L
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
+L +L+ L L N L G+I + +K +E + L FN G + G N TNL
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-----TNLNW 494
Query: 205 LDLGDNGITGELPSF-GMLPNLKVLRLGSNQLFGMIPEEL 243
+ L +N +TGE+P + G L NL +L+L +N G IP EL
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
+P LG S+LQ+LD+S NK G I+ L LN+S N F G P L+ L+
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 273
Query: 152 LDLRKNKLWGDIGGIMS-ELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN 210
L L +NK G+I +S + +DLS N F+G + + S + + L N
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS-----N 328
Query: 211 GITGELPSFGMLP--NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+GELP +L LKVL L N+ G +PE L + LDLS N F+
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
FTG+I P L + S L L LS N G IP + L L L L +N +G P L +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
+ L+ L L N L G+I +S N+ ++ LS NR G + + NL +L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-----NLAILK 520
Query: 207 LGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLE 245
L +N +G +P+ G +L L L +N G IP + +
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR-N 145
+G A+ + + L+ L++S+N+F+GPIP L L YL+L+ N F G P L
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 146 LQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVL 205
L LDL N +G + +E + LS N F G L + + + L+VL
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD----TLLKMRGLKVL 348
Query: 206 DLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVI-PIQELDLSGNGFT 261
DL N +GELP + +L L L SN G I L ++ +QEL L NGFT
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRIT---DLWGLNYLNLSMNGFKGGFPGNL------R 144
+LGS S L++L++S+N PG+++ L L L+LS N G N+
Sbjct: 121 SLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISG---ANVVGWVLSD 175
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
+LK L + NK+ GD+ +S N+EF+D+S N F G+ D + L+
Sbjct: 176 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA------LQH 227
Query: 205 LDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LD+ N ++G+ + LK+L + SNQ G IP L+S +Q L L+ N FT
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFT 282
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
+ G P + S+ +LD+S N G IP I + L LNL N G P + +L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185
+ L +LDL NKL G I MS L + +DLS N G
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 33/200 (16%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIP-------GRITD--LWGLNYLNLSMNGFKG 137
F+G I LG SL +LDL+ N F G IP G+I + G Y+ + +G K
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 138 GF--PGNLRNLQ-----QLKVLDLRK-----NKLWGDIGGIMSELKN---VEFVDLSFNR 182
GNL Q QL L R ++++G G N + F+D+S+N
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG--GHTSPTFDNNGSMMFLDMSYNM 643
Query: 183 FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPE 241
G + + S+ L +L+LG N I+G +P G L L +L L SN+L G IP+
Sbjct: 644 LSGYI---PKEIGSMPY--LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 242 ELLESVIPIQELDLSGNGFT 261
+ ++ + E+DLS N +
Sbjct: 699 A-MSALTMLTEIDLSNNNLS 717
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 30 GSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTG 89
G+L+EF+ GI+ + L R+ ST N ++ T T + D +G
Sbjct: 591 GNLLEFQ-GIRSEQLNRL-STRNPCNI--TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 90 RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQL 149
I +GS+ L L+L +N G IP + DL GLN L+LS N G P + L L
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 706
Query: 150 KVLDLRKNKLWGDI 163
+DL N L G I
Sbjct: 707 TEIDLSNNNLSGPI 720
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 88 TGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP 140
+G I +G + L LDLS+NK G IP ++ L L ++LS N G P
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 87 FTGRIVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144
F+G I+P L ++LQ L L NN F G IP +++ L L+LS N G P +L
Sbjct: 377 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
+L +L+ L L N L G+I + +K +E + L FN G + G N TNL
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC-----TNLNW 491
Query: 205 LDLGDNGITGELPSF-GMLPNLKVLRLGSNQLFGMIPEEL 243
+ L +N +TGE+P + G L NL +L+L +N G IP EL
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
+P LG S+LQ+LD+S NK G I+ L LN+S N F G P L+ L+
Sbjct: 213 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQY 270
Query: 152 LDLRKNKLWGDIGGIMS-ELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN 210
L L +NK G+I +S + +DLS N F+G + + S + + L N
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS-----N 325
Query: 211 GITGELPSFGMLP--NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+GELP +L LKVL L N+ G +PE L + LDLS N F+
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
FTG+I P L + S L L LS N G IP + L L L L +N +G P L +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
+ L+ L L N L G+I +S N+ ++ LS NR G + + NL +L
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-----NLAILK 517
Query: 207 LGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLE 245
L +N +G +P+ G +L L L +N G IP + +
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR-N 145
+G A+ + + L+ L++S+N+F+GPIP L L YL+L+ N F G P L
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 146 LQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVL 205
L LDL N +G + +E + LS N F G L + + + L+VL
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD----TLLKMRGLKVL 345
Query: 206 DLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVI-PIQELDLSGNGFT 261
DL N +GELP + +L L L SN G I L ++ +QEL L NGFT
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRIT---DLWGLNYLNLSMNGFKGGFPGNL------R 144
+LGS S L++L++S+N PG+++ L L L+LS N G N+
Sbjct: 118 SLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISG---ANVVGWVLSD 172
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
+LK L + NK+ GD+ +S N+EF+D+S N F G+ D + L+
Sbjct: 173 GCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSA------LQH 224
Query: 205 LDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LD+ N ++G+ + LK+L + SNQ G IP L+S +Q L L+ N FT
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFT 279
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNL 146
+ G P + S+ +LD+S N G IP I + L LNL N G P + +L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185
+ L +LDL NKL G I MS L + +DLS N G
Sbjct: 677 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 94/224 (41%), Gaps = 57/224 (25%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP------ 140
TG I +G + +L L LSNN F G IP + D L +L+L+ N F G P
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 141 -----------------------------GNLRNLQ-----QLKVLDLRK-----NKLWG 161
GNL Q QL L R ++++G
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 162 DIGGIMSELKN---VEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP- 217
G N + F+D+S+N G + + S+ L +L+LG N I+G +P
Sbjct: 619 --GHTSPTFDNNGSMMFLDMSYNMLSGYI---PKEIGSMPY--LFILNLGHNDISGSIPD 671
Query: 218 SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
G L L +L L SN+L G IP+ + ++ + E+DLS N +
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLS 714
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 30 GSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTG 89
G+L+EF+ GI+ + L R+ ST N ++ T T + D +G
Sbjct: 588 GNLLEFQ-GIRSEQLNRL-STRNPCNI--TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 90 RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQL 149
I +GS+ L L+L +N G IP + DL GLN L+LS N G P + L L
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTML 703
Query: 150 KVLDLRKNKLWGDI 163
+DL N L G I
Sbjct: 704 TEIDLSNNNLSGPI 717
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 88 TGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP 140
+G I +G + L LDLS+NK G IP ++ L L ++LS N G P
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 16/196 (8%)
Query: 49 STWNITSLPDTKSCPVSWTGVSCDPEXXXXXXXXXXXXFTG--RIVPALGSISSLQYLDL 106
S+W LP T C +W GV CD + + P S+++L YL+
Sbjct: 25 SSW----LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80
Query: 107 SN----NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD 162
N +GPIP I L L+YL ++ G P L ++ L LD N L G
Sbjct: 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 163 IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL-PSFGM 221
+ +S L N+ + NR G + + S + + + N +TG++ P+F
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----FTSMTISRNRLTGKIPPTFAN 196
Query: 222 LPNLKVLRLGSNQLFG 237
L NL + L N L G
Sbjct: 197 L-NLAFVDLSRNMLEG 211
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 14/157 (8%)
Query: 88 TGRIVPALGSISSL-QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP---GNL 143
+G I + GS S L + +S N+ G IP +L L +++LS N +G G+
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD 220
Query: 144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203
+N Q++ L KN L D+G + KN+ +DL NR +G L G + L
Sbjct: 221 KNTQKIH---LAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKF-----LH 271
Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP 240
L++ N + GE+P G L V +N+ P
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 237 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 290
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 291 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFANNK 341
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 342 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 387
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 102 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 157
Query: 147 QQL----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TN 201
QQL +V DL+ ++ L +E +D+S N+ ++S +A TN
Sbjct: 158 QQLSFGNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLTN 199
Query: 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N +
Sbjct: 200 LESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 287 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFSNNK 337
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 338 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 383
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 153
Query: 147 QQL----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TN 201
QQL +V DL+ ++ L +E +D+S N+ ++S +A TN
Sbjct: 154 QQLNFGNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLTN 195
Query: 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N +
Sbjct: 196 LESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS 251
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 288 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFSNNK 338
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 339 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 384
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 153
Query: 147 QQL-----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
QQL +V DL+ ++ L +E +D+S N+ ++S +A T
Sbjct: 154 QQLSFSSNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
NLE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N
Sbjct: 196 NLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQI 251
Query: 261 T 261
+
Sbjct: 252 S 252
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 200 TNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
TN ++L L DN IT P F L NLK L LGSNQL G +P + +S+ + LDL N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98
Query: 259 GFT 261
T
Sbjct: 99 QLT 101
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLK 150
VPA G ++ Q L L +N+ PG L L L L N G P G +L QL
Sbjct: 34 VPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLT 91
Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRF 183
VLDL N+L + L +++ + + N+
Sbjct: 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 238 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 291
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 292 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFYNNK 342
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 343 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 388
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 103 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 158
Query: 147 QQL----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TN 201
QQL +V DL+ ++ L +E +D+S N+ ++S +A TN
Sbjct: 159 QQLSFGNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLTN 200
Query: 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N +
Sbjct: 201 LESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 288 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFYNNK 338
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 339 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 384
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 153
Query: 147 QQL-----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
QQL +V DL+ ++ L +E +D+S N+ ++S +A T
Sbjct: 154 QQLSFSSNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
NLE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N
Sbjct: 196 NLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQI 251
Query: 261 T 261
+
Sbjct: 252 S 252
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 233 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 286
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 287 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFYNNK 337
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 338 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 383
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 33/180 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 153
Query: 147 QQL----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TN 201
QQL +V DL+ ++ L +E +D+S N+ ++S +A TN
Sbjct: 154 QQLNFGNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLTN 195
Query: 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
LE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N +
Sbjct: 196 LESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQIS 251
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 94 ALGSISSLQYLDLSNNKF--IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L S+++L LDL+NN+ + P+ G L L L L N P L L L
Sbjct: 234 TLASLTNLTDLDLANNQISNLAPLSG----LTKLTELKLGANQISNISP--LAGLTALTN 287
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L +N+L DI I S LKN+ ++ L FN VSS+ T L+ L +N
Sbjct: 288 LELNENQL-EDISPI-SNLKNLTYLTLYFNNIS-----DISPVSSL--TKLQRLFFYNNK 338
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+ ++ S L N+ L G NQ+ + P L ++ I +L L+ +T
Sbjct: 339 V-SDVSSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWT 384
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 89 GRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK--GGFPGNLRNL 146
I P L ++++L L L NN+ P + +L LN L LS N G L +L
Sbjct: 98 ADITP-LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSG-LTSL 153
Query: 147 QQL-----KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-T 200
QQL +V DL+ ++ L +E +D+S N+ ++S +A T
Sbjct: 154 QQLNFSSNQVTDLKP----------LANLTTLERLDISSNKVS--------DISVLAKLT 195
Query: 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
NLE L +N I+ P G+L NL L L NQL + L S+ + +LDL+ N
Sbjct: 196 NLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQI 251
Query: 261 T 261
+
Sbjct: 252 S 252
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 11/168 (6%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLRK 156
+S+L+ L LS NKF ++ L +L++ N + G L NL+ L+ LDL
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 157 NKL-WGDIGGI-MSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN--GI 212
+ + D + + L +++ ++LS+N L + + LE+LDL +
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLKTEAFKECPQ--LELLDLAFTRLKV 414
Query: 213 TGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
F L LKVL L S+ L + E+L + + +Q L+L GN F
Sbjct: 415 KDAQSPFQNLHLLKVLNL-SHSLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLD 153
A S+ + ++DLS+N+ ++ L G+ YLNL+ N P L L Q + ++
Sbjct: 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553
Query: 154 LRKNKLWGDIGGI 166
LR+N L I
Sbjct: 554 LRQNPLDCTCSNI 566
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 58/197 (29%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
+ SL++LDLS N + YL S KG +P L+ L L +N
Sbjct: 359 LKSLEFLDLSENLMVE------------EYLKNS--ACKGAWPS-------LQTLVLSQN 397
Query: 158 KLWG--DIGGIMSELKNVEFVDLSFNRFH---------------GGLGVGADNVSSIANT 200
L G I+ LKN+ +D+S N FH G V +
Sbjct: 398 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 457
Query: 201 NLEVLDLGDNGITG-------------------ELPSFGMLPNLKVLRLGSNQLFGMIPE 241
LEVLD+ +N + LP + P L V+++ SNQL +P+
Sbjct: 458 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIASNQL-KSVPD 516
Query: 242 ELLESVIPIQELDLSGN 258
+ + + +Q++ L N
Sbjct: 517 GIFDRLTSLQKIWLHTN 533
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-----GFKGGFPGNLRNLQQ 148
A S+ SL++LDLS+N L L YLNL N G FP NL NLQ
Sbjct: 95 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQT 153
Query: 149 LKV--LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
L++ ++ D G+ S L +E LS + + ++ SI + + L
Sbjct: 154 LRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQ------SQSLKSIRDIHHLTLH 206
Query: 207 LGDNGITGELPSFGMLPNLKVLRLGSNQL--FGMIPEELLESVIPIQELDLSGNGFT 261
L ++ E+ + +L +++ L L L F P + E P+++L G+ T
Sbjct: 207 LSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 262
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
IP +T + L+LS N G+LR L+VL L+ +++ G L ++E
Sbjct: 46 IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 103
Query: 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234
+DLS N +SS+ NL G+T P+ L NL+ LR+G+ +
Sbjct: 104 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN---LTNLQTLRIGNVE 160
Query: 235 LFGMIPEELLESVIPIQELDLSG 257
F I + + EL++
Sbjct: 161 TFSEIRRIDFAGLTSLNELEIKA 183
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 28/177 (15%)
Query: 104 LDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDI 163
+D S+ K IP I L+L N L +L++L L NKL
Sbjct: 21 VDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 164 GGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVSSIAN-------------------TNLE 203
GI ELKN+E + ++ N+ L +G D + ++A T L
Sbjct: 78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 204 VLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
L LG N + LP F L +LK LRL +NQL +PE + + ++ L L N
Sbjct: 137 YLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNN 191
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
S++ L YL L N+ G L L L L N K G L +LK L L
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190
Query: 157 NKLWGDIGGIMSELKNVEFVDLSFN 181
N+L G L+ ++ + L N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 90 RIVPAL--GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK-----GGFPGN 142
R+V L IS +LD SNN + L L L L MN K
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
Query: 143 LRNLQQLKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN 201
+++LQQL D+ +N + + + G S K++ +++S N + D +
Sbjct: 373 MKSLQQL---DISQNSVSYDEKKGDCSWTKSLLSLNMSSN-------ILTDTIFRCLPPR 422
Query: 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
++VLDL N I L L+ L + SNQL +P+ + + + +Q++ L N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 58/197 (29%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
+ SL++LDLS N + YL S KG +P L+ L L +N
Sbjct: 333 LKSLEFLDLSENLMVE------------EYLKNS--ACKGAWPS-------LQTLVLSQN 371
Query: 158 KLWG--DIGGIMSELKNVEFVDLSFNRFH---------------GGLGVGADNVSSIANT 200
L G I+ LKN+ +D+S N FH G V +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431
Query: 201 NLEVLDLGDNGITG-------------------ELPSFGMLPNLKVLRLGSNQLFGMIPE 241
LEVLD+ +N + LP + P L V+++ NQL +P+
Sbjct: 432 TLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQL-KSVPD 490
Query: 242 ELLESVIPIQELDLSGN 258
+ + + +Q++ L N
Sbjct: 491 GIFDRLTSLQKIWLHTN 507
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-----GFKGGFPGNLRNLQQ 148
A S+ SL++LDLS+N L L YLNL N G FP NL NLQ
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQT 127
Query: 149 LKV--LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206
L++ ++ D G+ S L +E LS + + ++ SI + + L
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTS-LNELEIKALSLRNYQ------SQSLKSIRDIHHLTLH 180
Query: 207 LGDNGITGELPSFGMLPNLKVLRLGSNQL--FGMIPEELLESVIPIQELDLSGNGFT 261
L ++ E+ + +L +++ L L L F P + E P+++L G+ T
Sbjct: 181 LSESAFLLEIFA-DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
IP +T + L+LS N G+LR L+VL L+ +++ G L ++E
Sbjct: 20 IPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE 77
Query: 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234
+DLS N +SS+ NL G+T P+ L NL+ LR+G+ +
Sbjct: 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN---LTNLQTLRIGNVE 134
Query: 235 LFGMIPEELLESVIPIQELDLSG 257
F I + + EL++
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKA 157
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 81/207 (39%), Gaps = 62/207 (29%)
Query: 91 IVPALGS--ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ 148
+VP L S + SL+YLDLS N + L + + +P
Sbjct: 324 LVPCLLSQHLKSLEYLDLSENLMVEEY--------------LKNSACEDAWPS------- 362
Query: 149 LKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFHG------------GLGVGADNV 194
L+ L LR+N L G + LKN+ +D+S N FH L + + +
Sbjct: 363 LQTLILRQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI 422
Query: 195 SSIANT---NLEVLD--------------------LGDNGITGELPSFGMLPNLKVLRLG 231
S+ LE+LD + N + LP +LP L VL++
Sbjct: 423 HSVTGCIPKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMT-LPDASLLPMLLVLKIS 481
Query: 232 SNQLFGMIPEELLESVIPIQELDLSGN 258
NQL +P+ + + + +Q++ L N
Sbjct: 482 RNQL-KSVPDGIFDRLTSLQKIWLHTN 507
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 112 IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELK 171
+ IP +T+ + L+LS N +L+ L+ L L N + S L
Sbjct: 17 LNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 172 NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT-GELPSFGMLPNLKVLRL 230
++E +DLS+N +SS+ NL LG+ T GE F L L++LR+
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----LGNPYKTLGETSLFSHLTKLQILRV 130
Query: 231 GSNQLFGMIPEELLESVIPIQELDLSGNGF 260
G+ F I + + ++EL++ +
Sbjct: 131 GNMDTFTKIQRKDFAGLTFLEELEIDASDL 160
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 15/146 (10%)
Query: 115 IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
IP + T YL+L N K G L L L L NKL G+ ++L ++
Sbjct: 26 IPAQTT------YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79
Query: 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGS 232
+++LS N+ D + T L+ L L N + LP F L LK LRL
Sbjct: 80 YLNLSTNQLQSLPNGVFDKL-----TQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQ 133
Query: 233 NQLFGMIPEELLESVIPIQELDLSGN 258
NQL +P+ + + + +Q + L N
Sbjct: 134 NQL-KSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
++SL YL+LS N+ G L L L L+ N + G L QLK L L +N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 158 KLWGDIGGIMSELKNVEFVDLSFN 181
+L G+ L +++++ L N
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
++SL L L NK G L L YLNLS N + G L QLK L L N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 158 KLWGDIGGIMSELKNVEFVDLSFNRFHG 185
+L G+ +L ++ + L N+
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKS 138
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 32/195 (16%)
Query: 88 TGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQ 147
TG PA S S+ + + + +P I YLNL N + ++L+
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLR 59
Query: 148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDL 207
L++L L KN + G + L ++ ++L NR + +S L L L
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSK-----LRELWL 114
Query: 208 GDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLE-------------------- 245
+N I +PS F +P+L+ L LG + I E E
Sbjct: 115 RNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 246 --SVIPIQELDLSGN 258
+++ ++EL+LSGN
Sbjct: 174 LTALVRLEELELSGN 188
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 65/169 (38%), Gaps = 33/169 (19%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
+ AL +++L YL L+ N+ G L L L L N + G L L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L+L N+L G+ +L N+ +DLS+N+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-------------------------- 171
Query: 212 ITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
LP F L LK LRL NQL +P+ + + + +Q + L N
Sbjct: 172 ----LPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 32/195 (16%)
Query: 88 TGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQ 147
TG PA S S+ + + + +P I YLNL N + ++L+
Sbjct: 2 TGTSCPAACSCSNQASRVICTRRELAEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLR 59
Query: 148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDL 207
L++L L KN + G + L ++ ++L NR + +S L L L
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSK-----LRELWL 114
Query: 208 GDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLE-------------------- 245
+N I +PS F +P+L+ L LG + I E E
Sbjct: 115 RNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN 173
Query: 246 --SVIPIQELDLSGN 258
+++ ++EL+LSGN
Sbjct: 174 LTALVRLEELELSGN 188
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 13/175 (7%)
Query: 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL--R 144
F + P S SS +L+ + N F + + L L L L NG K F L +
Sbjct: 343 FIHMVCPP--SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400
Query: 145 NLQQLKVLDLRKNKLWGD-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203
N+ L+ LD+ N L + +++ ++LS N G V ++
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS-------VFRCLPPKVK 453
Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
VLDL +N I L L+ L + SNQL +P+ + + + +Q + L N
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 21/130 (16%)
Query: 149 LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-------------GLGVGADNVS 195
+K DL K+K++ + + S ++E + L+ N + L + + +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 196 SIANT------NLEVLDLGDNGITGE-LPSFGMLPNLKVLRLGSNQLFGMIPEELLESVI 248
SI + LEVLDL N I SF LPNLK L L +NQL +P+ + + +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLT 395
Query: 249 PIQELDLSGN 258
+Q++ L N
Sbjct: 396 SLQKIWLHTN 405
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 117 GRITDLWGLNYLNLSMNGFKGG--FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
G + L L L+LS N + L+NL L+ L+L N+ G E +E
Sbjct: 341 GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 175 FVDLSFNRFH 184
+DL+F R H
Sbjct: 401 LLDLAFTRLH 410
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
VPA G ++ Q L L N+ PG L L YLNL++N G L +L
Sbjct: 34 VPA-GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTH 92
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
L L N+L G+ LK++ + L FN
Sbjct: 93 LALHINQLKSIPMGVFDNLKSLTHIYL-FN 121
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG 188
NL MN + +L L LK +L ++++++N+ ++L N
Sbjct: 109 NLGMNITRQ----HLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSH 164
Query: 189 VGADNVSSIANTNLEVLDLGDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLES 246
+ D NLE ++ G N + ++P FG +P LK L L SNQL +P+ + +
Sbjct: 165 LFDDL------ENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKS-VPDGIFDR 216
Query: 247 VIPIQELDLSGN 258
+ +Q++ L N
Sbjct: 217 LTSLQKIWLHTN 228
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 98 ISSLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
+SSL+ L ++ N F +P T+L L +L+LS + P +L L+VL++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 157 NKLWGDIGGIMSELKNVE 174
N+L GI L +++
Sbjct: 504 NQLKSVPDGIFDRLTSLQ 521
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 118 RITDL---WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
R+ D +G +L L F G FP L+ LK L NK + +L ++E
Sbjct: 296 RVKDFSYNFGWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLE 350
Query: 175 FVDLSFNRFHGGLGV-GADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
F+DLS N GL G + S T+L+ LDL NG+ +F L L+ L +
Sbjct: 351 FLDLSRN----GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 234 QLFGMIPEELLESVIPIQELDLS 256
L M + S+ + LD+S
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDIS 429
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 36/191 (18%)
Query: 99 SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG--FKG-----------------GF 139
SS L+L +NK G L L L+LS NG FKG F
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 140 PG------NLRNLQQLKVLDLRKNKL--WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA 191
G N L+QL+ LD + + L + +S L+N+ ++D+S
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIF 146
Query: 192 DNVSSIANTNLEVLDLGDNGITGE-LPS-FGMLPNLKVLRLGSNQLFGMIPEELLESVIP 249
+ +SS LEVL + N LP F L NL L L QL + P S+
Sbjct: 147 NGLSS-----LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSS 200
Query: 250 IQELDLSGNGF 260
+Q L++S N F
Sbjct: 201 LQVLNMSHNNF 211
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLR 155
S+ +L YLD+S+ G L L L ++ N F+ F P L+ L LDL
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGI 212
+ +L + L +++ +++S N F D +L+VLD N I
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE-LKNVEFVDLSFNRFHGG 186
LNL+ N G L QL++LDL N++ + G L+N+ + LS+N++
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQL 445
Query: 187 LGVGADNVSSIANTNLEVLDLGDNGITGELPS-FGMLPNLKVLRLGSNQLFGMIPEELLE 245
V S+ L + L + I+ PS F L NL +L L +N + I E+LLE
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNI-ANINEDLLE 501
Query: 246 SVIPIQELDLSGNGFT 261
+ ++ LD N
Sbjct: 502 GLENLEILDFQHNNLA 517
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFK-----GGFPG----NLR 144
+ + SL+YL L N P L L YL+L K P + +
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204
L+ L+ L++ N + + L +++++ LS F + + S+A++ L
Sbjct: 327 WLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLS-KTFTSLQTLTNETFVSLAHSPLLT 385
Query: 205 LDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
L+L N I+ +F L L++L LG N++ + + + I E+ LS N +
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVL 152
A S+ L YLD+S G L LN L ++ N FK N+ N L L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 153 DLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
DL K +L G+ L ++ +++S N
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHN 507
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLW--GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
++ SL YLDLS N +DL L +L+LS NG N L++L+ LD
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 406
Query: 155 RKNKL--WGDIGGIMSELKNVEFVDLSFNR----FHG-GLGVGADNVSSIANTNLEVLDL 207
+ + L + +S L+ + ++D+S+ F G LG+ + N +A + +
Sbjct: 407 QHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK---- 461
Query: 208 GDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259
DN ++ F NL L L QL I + +++ +Q L++S N
Sbjct: 462 -DNTLSN---VFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNN 508
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLR 155
S+ +L YLD+S+ G L L L ++ N F+ F P L+ L LDL
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGI 212
+ +L + L +++ +++S N F D +L+VLD N I
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLDTFPYKCLNSLQVLDYSLNHI 530
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 13/143 (9%)
Query: 118 RITDL---WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
R+ D +G +L L F G FP L+ LK L NK + +L ++E
Sbjct: 296 RVKDFSYNFGWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLE 350
Query: 175 FVDLSFNRFHGGLGV-GADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
F+DLS N GL G + S T+L+ LDL NG+ +F L L+ L +
Sbjct: 351 FLDLSRN----GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406
Query: 234 QLFGMIPEELLESVIPIQELDLS 256
L M + S+ + LD+S
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDIS 429
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVL 152
A S+ L YLD+S G L LN L ++ N FK N+ N L L
Sbjct: 414 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 473
Query: 153 DLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
DL K +L G+ L ++ +++S N
Sbjct: 474 DLSKCQLEQISWGVFDTLHRLQLLNMSHN 502
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLW--GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
++ SL YLDLS N +DL L +L+LS NG N L++L+ LD
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF 401
Query: 155 RKNKL--WGDIGGIMSELKNVEFVDLSFNR----FHG-GLGVGADNVSSIANTNLEVLDL 207
+ + L + +S L+ + ++D+S+ F G LG+ + N +A + +
Sbjct: 402 QHSTLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK---- 456
Query: 208 GDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259
DN ++ F NL L L QL I + +++ +Q L++S N
Sbjct: 457 -DNTLSN---VFANTTNLTFLDLSKCQL-EQISWGVFDTLHRLQLLNMSHNN 503
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLR 155
S+ +L YLD+S+ G L L L ++ N F+ F P L+ L LDL
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGI 212
+ +L + L +++ +++S N F D +L+VLD N I
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 118 RITDL---WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174
R+ D +G +L L F G FP L+ LK L NK + +L ++E
Sbjct: 320 RVKDFSYNFGWQHLELVNCKF-GQFPT--LKLKSLKRLTFTSNKGGNAFSEV--DLPSLE 374
Query: 175 FVDLSFNRFHGGLGV-GADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSN 233
F+DLS N GL G + S +L+ LDL NG+ +F L L+ L +
Sbjct: 375 FLDLSRN----GLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 430
Query: 234 QLFGMIPEELLESVIPIQELDLS 256
L M + S+ + LD+S
Sbjct: 431 NLKQMSEFSVFLSLRNLIYLDIS 453
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
VP+ G + + LDL + L L +LNL N + G +L +L
Sbjct: 29 VPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L L N+L G+ L ++ + L N+ D + T L+ L L N
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-----TKLKELRLNTNQ 142
Query: 212 ITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
+ +P +F L NL+ L L +NQL +P + + +Q + L GN F
Sbjct: 143 LQS-IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
VP+ G + + LDL + L L +LNL N + G +L +L
Sbjct: 29 VPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211
L L N+L G+ L ++ + L N+ D + T L+ L L N
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-----TKLKELRLNTNQ 142
Query: 212 ITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260
+ +P +F L NL+ L L +NQL +P + + +Q + L GN F
Sbjct: 143 LQS-IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Query: 112 IGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELK 171
+ IP +T+ + L+LS N +L+ L+ L L N + S L
Sbjct: 43 LNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 172 NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT-GELPSFGMLPNLKVLRL 230
++E +DLS+N +SS+ NL LG+ T GE F L L++LR+
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL----LGNPYKTLGETSLFSHLTKLQILRV 156
Query: 231 GSNQLFGMIPEELLESVIPIQELDLSGN 258
G+ F I + + ++EL++ +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDAS 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 143 LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN- 201
RNL L++LDL +K++ L ++ + L F GL N
Sbjct: 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF----CGLSDAVLKDGYFRNLKA 124
Query: 202 LEVLDLGDNGITGEL--PSFGMLPNLKVLRLGSNQLFGMIPEEL 243
L LDL N I PSFG L +LK + SNQ+F + EL
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF--PGNLRNLQQLKV 151
A ++ +L+ LDL ++K P L+ L L L G G RNL+ L
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 152 LDLRKNKL--------WGDIGGIMS--------------EL-----KNVEFVDLSFNRFH 184
LDL KN++ +G + + S EL K + F L+ N +
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 185 GGLGVG-ADNVSSIANTNLEVLDLGDNGITGEL 216
+ V ++ N LE+LD+ NG T ++
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI 220
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
+T + +F LPNL++L LGS++++ + P+ + + + EL L G +
Sbjct: 62 LTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFELRLYFCGLS 110
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 95 LGSISSLQYLDLSNNK----FIGPIPGRITDLWGLNYLNLSM------NGFKGGFPGN-- 142
L S+S+L+ LDL+NN +GP I L N N+S G K + N
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGP---SIETLHAANN-NISRVSCSRGQGKKNIYLANNK 131
Query: 143 ---LRNLQQ-----LKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
LR+L + ++ LDL+ N++ + + + +E ++L +N + G
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----- 186
Query: 194 VSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
+ L+ LDL N + P F + + L +N+L ++ E+ L ++
Sbjct: 187 --QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHF 242
Query: 254 DLSGNGF 260
DL GNGF
Sbjct: 243 DLRGNGF 249
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
Query: 121 DLWGLNYLNLSMNGFKGGF--------------PGNLRNLQQLKVLDLRKNKLW---GDI 163
DL L N+S N FK F P ++NL L+VLDL N+L ++
Sbjct: 230 DLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289
Query: 164 GGIMSELKNVEFVD 177
G +LK F D
Sbjct: 290 GSCF-QLKYFYFFD 302
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLD 153
A + ++ +LDLS+N G ++ L GL YLN++ N + P L L Q +++
Sbjct: 494 AFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 154 LRKNKLWGDIGGI 166
L N L I
Sbjct: 553 LSHNPLDCTCSNI 565
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 94 ALGSISSLQYLDLSNNKFIGP--IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
L + +LQ LDLS++ ++ +L L YLNLS N G + QL++
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLEL 403
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN----VSSIANTNLEVLDL 207
LD+ L + S +N+ + + N H L + + + + NL+
Sbjct: 404 LDVAFTHLH--VKAPHSPFQNLHLLRV-LNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 208 GDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
D I+ + M+ +L++L L S L I ++ + + LDLS N T
Sbjct: 461 QDGSIS-KTNLLQMVGSLEILILSSCNLLS-IDQQAFHGLRNVNHLDLSHNSLT 512
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 34/187 (18%)
Query: 95 LGSISSLQYLDLSNNK----FIGPIPGRITDLWGLNYLNLSM------NGFKGGFPGN-- 142
L S+S+L+ LDL+NN +GP I L N N+S G K + N
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGP---SIETLHAANN-NISRVSCSRGQGKKNIYLANNK 131
Query: 143 ---LRNLQQ-----LKVLDLRKNKL-WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN 193
LR+L + ++ LDL+ N++ + + + +E ++L +N + G
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----- 186
Query: 194 VSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253
+ L+ LDL N + P F + + L +N+L ++ E+ L ++
Sbjct: 187 --QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL--VLIEKALRFSQNLEHF 242
Query: 254 DLSGNGF 260
DL GNGF
Sbjct: 243 DLRGNGF 249
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ--------- 148
+ L++L++ +N G T L L YL+LS N F LR L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTS-----LRTLTNETFVSLAHS 391
Query: 149 -LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN----RFHGGLGVGADNVSSIANTNLE 203
L +L+L KNK+ S L ++E +DL N G G +N+ I + +
Sbjct: 392 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 451
Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRL 230
L L N SF ++P+L+ L L
Sbjct: 452 YLQLTRN-------SFALVPSLQRLML 471
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG 161
+YL L+ N F + L L +++ P + L+ L +LDL N +
Sbjct: 451 KYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIAN 504
Query: 162 DIGGIMSELKNVEFVDLSFNRF-----HGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
++ L+ +E +DL N H G + ++ +L +L+L NG E+
Sbjct: 505 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS--HLHILNLESNGF-DEI 561
Query: 217 P--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
P F L LK++ LG N L +P + + + ++ L+L N T
Sbjct: 562 PVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLIT 607
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ--------- 148
+ L++L++ +N G T L L YL+LS N F LR L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTS-----LRTLTNETFVSLAHS 386
Query: 149 -LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN----RFHGGLGVGADNVSSIANTNLE 203
L +L+L KNK+ S L ++E +DL N G G +N+ I + +
Sbjct: 387 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 446
Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRL 230
L L N SF ++P+L+ L L
Sbjct: 447 YLQLTRN-------SFALVPSLQRLML 466
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG 161
+YL L+ N F + L L +++ P + L+ L +LDL N +
Sbjct: 446 KYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIAN 499
Query: 162 DIGGIMSELKNVEFVDLSFNRF-----HGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
++ L+ +E +DL N H G + ++ +L +L+L NG E+
Sbjct: 500 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS--HLHILNLESNGF-DEI 556
Query: 217 P--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
P F L LK++ LG N L +P + + + ++ L+L N T
Sbjct: 557 PVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLIT 602
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 62/147 (42%), Gaps = 27/147 (18%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ--------- 148
+ L++L++ +N G T L L YL+LS N F LR L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTS-----LRTLTNETFVSLAHS 381
Query: 149 -LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN----RFHGGLGVGADNVSSIANTNLE 203
L +L+L KNK+ S L ++E +DL N G G +N+ I + +
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441
Query: 204 VLDLGDNGITGELPSFGMLPNLKVLRL 230
L L N SF ++P+L+ L L
Sbjct: 442 YLQLTRN-------SFALVPSLQRLML 461
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 17/167 (10%)
Query: 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG 161
+YL L+ N F + L L +++ P + L+ L +LDL N +
Sbjct: 441 KYLQLTRNSF-----ALVPSLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIAN 494
Query: 162 DIGGIMSELKNVEFVDLSFNRF-----HGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
++ L+ +E +DL N H G + ++ +L +L+L NG E+
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS--HLHILNLESNGF-DEI 551
Query: 217 P--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261
P F L LK++ LG N L +P + + + ++ L+L N T
Sbjct: 552 PVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKNLIT 597
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258
FG LP+L L L NQL G+ P E IQEL L N
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGEN 88
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 88 TGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQ 147
+ + P++ S S+ + K + +P I+ LNL N + + ++L+
Sbjct: 31 SAQTCPSVCSCSNQFSKVICVRKNLREVPDGIST--NTRLLNLHENQIQIIKVNSFKHLR 88
Query: 148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDL 207
L++L L +N + G + L N+ ++L NR N + + + L+ L L
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-----TTIPNGAFVYLSKLKELWL 143
Query: 208 GDNGITGELPS--FGMLPNLKVLRLGSNQLFGMIPEELLE-------------------- 245
+N I +PS F +P+L+ L LG + I E E
Sbjct: 144 RNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202
Query: 246 --SVIPIQELDLSGNGFT 261
+I + ELDLSGN +
Sbjct: 203 LTPLIKLDELDLSGNHLS 220
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%)
Query: 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKV 151
+ AL +++L YL L+ N+ G L L L L N + G L L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185
L L N+L G+ +L N+ +DL N+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%)
Query: 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157
+++L YL L +N+ G L L L+L N + G L QLK L L N
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 158 KLWGDIGGIMSELKNVEFV 176
+L G+ L ++ +
Sbjct: 192 QLKSVPDGVFDRLTSLTHI 210
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 92 VPALG-SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
+P LG ++ +L LD+S N+ G + L L L L N K PG L +L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
L L N+L G+++ L+N++ + L N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
++ +L L L NNK PG L L L LS N K + LQ+L+V +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HE 130
Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
N++ + + L + V+L N G +N + L + + D IT +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNIT-TI 186
Query: 217 PSFGMLPNLKVLRLGSNQL 235
P G+ P+L L L N++
Sbjct: 187 PQ-GLPPSLTELHLDGNKI 204
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
SL L L NK + L L L LS N G+L N L+ L L NKL
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 160 WGDIGGIMSELKNVEFVDLSFN 181
GG +++ K ++ V L N
Sbjct: 253 VKVPGG-LADHKYIQVVYLHNN 273
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 92 VPALG-SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
+P LG ++ +L LD+S N+ G + L L L L N K PG L +L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
L L N+L G+++ L+N++ + L N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 92 VPALG-SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
+P LG ++ +L LD+S N+ G + L L L L N K PG L +L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
L L N+L G+++ L+N++ + L N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 92 VPALG-SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150
+P LG ++ +L LD+S N+ G + L L L L N K PG L +L+
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 151 VLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184
L L N+L G+++ L+N++ + L N +
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156
++ +L L L NNK PG L L L LS N K + LQ+L+V +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRV---HE 130
Query: 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216
N++ + + L + V+L N G +N + L + + D IT +
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAFQGMKKLSYIRIADTNIT-TI 186
Query: 217 PSFGMLPNLKVLRLGSNQL 235
P G+ P+L L L N++
Sbjct: 187 PQ-GLPPSLTELHLDGNKI 204
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159
SL L L NK + L L L LS N G+L N L+ L L NKL
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
Query: 160 WGDIGGIMSELKNVEFVDLSFN 181
GG +++ K ++ V L N
Sbjct: 253 VKVPGG-LADHKYIQVVYLHNN 273
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 26/122 (21%)
Query: 88 TGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF----KGGFPG 141
T +++P A L+ +DLSNN+ P L LN L L N K F G
Sbjct: 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 142 N--------------------LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
++L L +L L NKL G S L+ ++ + L+ N
Sbjct: 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Query: 182 RF 183
F
Sbjct: 163 PF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 26/122 (21%)
Query: 88 TGRIVP--ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF----KGGFPG 141
T +++P A L+ +DLSNN+ P L LN L L N K F G
Sbjct: 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102
Query: 142 N--------------------LRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181
++L L +L L NKL G S L+ ++ + L+ N
Sbjct: 103 LFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Query: 182 RF 183
F
Sbjct: 163 PF 164
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 72/167 (43%), Gaps = 28/167 (16%)
Query: 95 LGSISSLQYL------DLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ 148
+ +I +QYL +L +N+ P + +L + L LS N K + LQ
Sbjct: 53 VTTIEGVQYLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQS 108
Query: 149 LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-----------GLGVGADNVSSI 197
+K LDL ++ D+ ++ L N++ + L N+ L +G VS +
Sbjct: 109 IKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166
Query: 198 ---AN-TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP 240
AN + L L DN I+ P LPNL + L +NQ+ + P
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP 212
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 42/174 (24%)
Query: 95 LGSISSLQYL------DLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQ 148
+ +I +QYL +L +N+ P + +L + L LS N K + LQ
Sbjct: 59 VTTIEGIQYLNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQS 114
Query: 149 LKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN-TNLEVLDL 207
+K LDL ++ D+ ++ L N++ + L N+ N+S +A TNL+ L +
Sbjct: 115 IKTLDLTSTQIT-DVTP-LAGLSNLQVLYLDLNQIT--------NISPLAGLTNLQYLSI 164
Query: 208 GDNGIT---------------------GELPSFGMLPNLKVLRLGSNQLFGMIP 240
G+N + ++ LPNL + L NQ+ + P
Sbjct: 165 GNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNLIEVHLKDNQISDVSP 218
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 60/159 (37%), Gaps = 24/159 (15%)
Query: 95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154
S L+ L+L+ N PG +L+ L L L N K G L L LD+
Sbjct: 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 155 RKNKLWGDIGGIMSELKNV--------EFVDLSFNRFHG-----GLGVGADNVSSIANTN 201
+NK+ + + +L N+ + V +S F G L + N++SI
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 202 LEVL---------DLGDNGITGELPSFGMLPNLKVLRLG 231
L L L N I SF L LKVL +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEIS 208
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNV 194
+ P +++ L VLD K+ + G I G+ E + +EF+ + VG ++
Sbjct: 16 LRNRTPSDVKEL----VLDNCKS-IEGKIEGLTDEFEELEFL--------STINVGLTSI 62
Query: 195 SSIANTNLEVL-DLGDNGITGELPSFG-MLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252
S++ N +L +N I+G+L PNLK L L N++ + E L+ + ++
Sbjct: 63 SNLPKLNKLKKLELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKS 122
Query: 253 LDL 255
LDL
Sbjct: 123 LDL 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,392,254
Number of Sequences: 62578
Number of extensions: 309629
Number of successful extensions: 918
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 199
length of query: 261
length of database: 14,973,337
effective HSP length: 97
effective length of query: 164
effective length of database: 8,903,271
effective search space: 1460136444
effective search space used: 1460136444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)