Query 042660
Match_columns 261
No_of_seqs 264 out of 3267
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:20:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-29 8E-34 238.6 21.4 240 10-260 12-272 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.2E-21 2.6E-26 187.2 13.4 181 79-260 144-344 (968)
3 KOG4237 Extracellular matrix p 99.8 7.8E-22 1.7E-26 161.7 -0.1 199 62-261 41-335 (498)
4 KOG4194 Membrane glycoprotein 99.8 2.1E-21 4.6E-26 166.3 -0.3 179 76-260 198-377 (873)
5 KOG4194 Membrane glycoprotein 99.8 6.3E-19 1.4E-23 151.3 6.4 192 62-260 50-257 (873)
6 PLN03150 hypothetical protein; 99.7 1.2E-16 2.6E-21 145.1 14.0 158 22-187 367-531 (623)
7 KOG0617 Ras suppressor protein 99.7 5.5E-19 1.2E-23 130.2 -3.8 158 76-243 34-192 (264)
8 KOG0617 Ras suppressor protein 99.7 6.5E-19 1.4E-23 129.8 -5.2 157 95-261 29-186 (264)
9 KOG0444 Cytoskeletal regulator 99.6 3.1E-17 6.7E-22 142.4 -3.4 173 78-260 106-303 (1255)
10 KOG0444 Cytoskeletal regulator 99.6 7.2E-17 1.6E-21 140.1 -1.6 174 79-260 82-280 (1255)
11 PRK15370 E3 ubiquitin-protein 99.5 2.6E-13 5.6E-18 124.6 12.6 166 76-260 200-379 (754)
12 cd00116 LRR_RI Leucine-rich re 99.5 4.5E-15 9.8E-20 124.8 0.9 186 75-261 81-291 (319)
13 KOG0472 Leucine-rich repeat pr 99.5 2E-16 4.3E-21 130.7 -7.3 171 79-261 95-288 (565)
14 cd00116 LRR_RI Leucine-rich re 99.5 8.8E-15 1.9E-19 123.0 2.4 184 76-261 52-263 (319)
15 KOG0472 Leucine-rich repeat pr 99.4 4.4E-16 9.5E-21 128.6 -8.2 174 77-261 70-265 (565)
16 PLN03210 Resistant to P. syrin 99.4 2E-12 4.4E-17 125.4 14.1 178 76-258 612-835 (1153)
17 PRK15387 E3 ubiquitin-protein 99.4 1.7E-12 3.7E-17 118.9 11.7 76 172-261 383-458 (788)
18 PRK15370 E3 ubiquitin-protein 99.4 4.4E-13 9.6E-18 123.1 7.6 76 76-160 221-296 (754)
19 KOG4237 Extracellular matrix p 99.4 5.7E-15 1.2E-19 121.8 -4.7 177 78-260 94-358 (498)
20 KOG0618 Serine/threonine phosp 99.4 2.7E-14 5.9E-19 128.7 -2.5 130 122-259 358-487 (1081)
21 PRK15387 E3 ubiquitin-protein 99.4 1.1E-11 2.5E-16 113.6 13.2 32 224-260 383-414 (788)
22 PLN03210 Resistant to P. syrin 99.3 1.5E-11 3.2E-16 119.4 14.5 54 201-258 826-879 (1153)
23 KOG0532 Leucine-rich repeat (L 99.3 2.1E-14 4.5E-19 123.4 -5.3 159 78-243 78-253 (722)
24 PLN03150 hypothetical protein; 99.3 4.1E-12 8.9E-17 115.7 9.0 114 100-217 419-532 (623)
25 KOG0618 Serine/threonine phosp 99.3 6.5E-14 1.4E-18 126.3 -3.4 156 100-260 242-419 (1081)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 94.2 4.1 128 96-231 16-148 (175)
27 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.4E-16 105.2 5.6 172 76-260 117-289 (394)
28 KOG0532 Leucine-rich repeat (L 99.1 4.6E-12 9.9E-17 109.3 -1.9 144 79-234 125-271 (722)
29 PF14580 LRR_9: Leucine-rich r 99.1 7.1E-11 1.5E-15 89.8 3.1 128 119-256 15-148 (175)
30 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.2E-16 98.8 -1.2 131 97-238 282-414 (490)
31 PF13855 LRR_8: Leucine rich r 99.0 3.1E-10 6.8E-15 71.2 3.7 59 124-182 2-60 (61)
32 PF13855 LRR_8: Leucine rich r 99.0 2.7E-10 5.9E-15 71.5 3.2 61 99-159 1-61 (61)
33 KOG3207 Beta-tubulin folding c 98.9 2.3E-10 4.9E-15 96.1 0.4 177 79-260 125-313 (505)
34 COG4886 Leucine-rich repeat (L 98.9 1.1E-09 2.4E-14 95.0 4.6 170 80-261 98-268 (394)
35 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.2E-15 95.5 -0.2 181 76-261 147-339 (505)
36 KOG1259 Nischarin, modulator o 98.8 2.4E-10 5.3E-15 91.9 -1.7 130 121-261 282-412 (490)
37 KOG1909 Ran GTPase-activating 98.8 1.5E-09 3.3E-14 88.8 0.5 18 219-236 237-254 (382)
38 KOG1909 Ran GTPase-activating 98.7 3.1E-09 6.8E-14 87.0 0.7 185 75-260 30-253 (382)
39 KOG1859 Leucine-rich repeat pr 98.6 4.6E-10 9.9E-15 99.8 -7.6 127 124-260 165-291 (1096)
40 KOG2982 Uncharacterized conser 98.5 3.1E-08 6.7E-13 79.8 1.8 178 79-261 75-262 (418)
41 KOG0531 Protein phosphatase 1, 98.5 1.2E-08 2.7E-13 89.0 -0.5 99 79-183 99-198 (414)
42 PF08263 LRRNT_2: Leucine rich 98.5 2.1E-07 4.5E-12 53.7 4.0 42 26-72 2-43 (43)
43 KOG0531 Protein phosphatase 1, 98.4 2.4E-08 5.1E-13 87.2 -2.3 169 79-260 76-267 (414)
44 KOG1859 Leucine-rich repeat pr 98.4 2.3E-09 5E-14 95.4 -9.0 125 101-236 166-292 (1096)
45 KOG1644 U2-associated snRNP A' 98.2 2.7E-06 5.9E-11 65.0 5.9 57 101-159 44-100 (233)
46 COG5238 RNA1 Ran GTPase-activa 98.2 4.6E-07 1E-11 72.3 1.8 160 76-236 31-227 (388)
47 KOG4658 Apoptotic ATPase [Sign 98.2 1.2E-06 2.5E-11 82.6 3.2 105 77-182 547-653 (889)
48 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.5E-11 49.3 3.1 36 201-236 2-37 (44)
49 KOG4579 Leucine-rich repeat (L 98.0 1.2E-07 2.6E-12 68.0 -4.6 104 101-213 29-136 (177)
50 KOG1644 U2-associated snRNP A' 98.0 1.8E-05 3.8E-10 60.7 6.3 101 79-181 46-150 (233)
51 PF12799 LRR_4: Leucine Rich r 98.0 8.7E-06 1.9E-10 47.1 3.5 34 125-159 3-36 (44)
52 KOG4658 Apoptotic ATPase [Sign 98.0 4.8E-06 1E-10 78.6 3.5 107 99-211 545-653 (889)
53 COG5238 RNA1 Ran GTPase-activa 97.9 4.1E-06 8.9E-11 67.0 1.9 163 94-259 87-283 (388)
54 KOG4579 Leucine-rich repeat (L 97.8 3.2E-07 6.8E-12 65.9 -5.5 102 79-184 31-136 (177)
55 PRK15386 type III secretion pr 97.7 0.00025 5.4E-09 61.0 9.1 133 77-234 54-188 (426)
56 KOG2120 SCF ubiquitin ligase, 97.7 1.2E-06 2.6E-11 70.8 -5.0 155 101-257 187-372 (419)
57 KOG2120 SCF ubiquitin ligase, 97.7 1.1E-06 2.4E-11 71.1 -5.5 105 75-182 136-245 (419)
58 KOG2739 Leucine-rich acidic nu 97.6 3E-05 6.5E-10 61.7 2.0 84 98-183 42-128 (260)
59 KOG3665 ZYG-1-like serine/thre 97.6 4.1E-05 8.9E-10 70.6 2.8 61 124-184 123-186 (699)
60 KOG2982 Uncharacterized conser 97.4 1.6E-05 3.4E-10 64.6 -1.6 160 97-260 69-236 (418)
61 KOG3665 ZYG-1-like serine/thre 97.4 6.5E-05 1.4E-09 69.3 1.2 24 222-245 249-272 (699)
62 PF13306 LRR_5: Leucine rich r 97.3 0.0014 3E-08 47.2 7.0 83 94-179 7-89 (129)
63 PRK15386 type III secretion pr 97.2 0.0022 4.8E-08 55.3 8.9 54 98-157 51-104 (426)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00024 5.1E-09 56.7 2.6 109 140-255 36-150 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0024 5.3E-08 45.9 7.0 123 116-250 5-128 (129)
66 KOG2123 Uncharacterized conser 97.0 1.3E-05 2.8E-10 64.5 -6.2 105 98-206 18-123 (388)
67 KOG2123 Uncharacterized conser 96.4 0.00015 3.2E-09 58.5 -3.9 85 122-214 18-102 (388)
68 KOG4308 LRR-containing protein 96.3 1.7E-05 3.7E-10 70.0 -11.1 184 77-260 89-302 (478)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0052 1.1E-07 29.5 0.8 11 126-136 3-13 (22)
70 PF00560 LRR_1: Leucine Rich R 95.3 0.01 2.2E-07 28.5 1.2 12 149-160 2-13 (22)
71 smart00369 LRR_TYP Leucine-ric 94.2 0.051 1.1E-06 27.1 2.2 22 223-245 2-23 (26)
72 smart00370 LRR Leucine-rich re 94.2 0.051 1.1E-06 27.1 2.2 22 223-245 2-23 (26)
73 PF13504 LRR_7: Leucine rich r 93.1 0.061 1.3E-06 23.9 1.2 12 202-213 3-14 (17)
74 KOG4308 LRR-containing protein 92.9 0.001 2.2E-08 58.9 -9.1 160 101-261 89-275 (478)
75 KOG1947 Leucine rich repeat pr 91.7 0.08 1.7E-06 46.9 1.3 37 222-258 268-305 (482)
76 smart00369 LRR_TYP Leucine-ric 90.6 0.25 5.3E-06 24.5 2.0 13 124-136 3-15 (26)
77 smart00370 LRR Leucine-rich re 90.6 0.25 5.3E-06 24.5 2.0 13 124-136 3-15 (26)
78 KOG0473 Leucine-rich repeat pr 89.0 0.0048 1E-07 48.8 -7.6 82 77-161 44-125 (326)
79 KOG0473 Leucine-rich repeat pr 88.8 0.0054 1.2E-07 48.5 -7.5 90 92-184 35-124 (326)
80 PF13516 LRR_6: Leucine Rich r 88.2 0.2 4.4E-06 24.3 0.5 15 223-237 2-16 (24)
81 smart00365 LRR_SD22 Leucine-ri 80.1 1.6 3.5E-05 21.8 1.7 12 249-260 3-14 (26)
82 smart00368 LRR_RI Leucine rich 79.4 1.1 2.4E-05 22.7 1.0 13 224-236 3-15 (28)
83 PF07172 GRP: Glycine rich pro 76.3 3.5 7.5E-05 28.0 3.0 20 1-20 1-20 (95)
84 KOG3864 Uncharacterized conser 76.1 0.35 7.5E-06 37.6 -2.1 33 125-157 103-135 (221)
85 smart00364 LRR_BAC Leucine-ric 72.7 2.6 5.7E-05 21.0 1.3 16 224-240 3-18 (26)
86 KOG3864 Uncharacterized conser 71.9 0.62 1.4E-05 36.3 -1.6 86 145-233 99-186 (221)
87 KOG3763 mRNA export factor TAP 71.5 2.4 5.2E-05 38.0 1.7 13 201-213 271-283 (585)
88 KOG3763 mRNA export factor TAP 70.7 2.9 6.3E-05 37.5 2.0 64 169-238 216-285 (585)
89 KOG1947 Leucine rich repeat pr 69.1 2.7 5.9E-05 37.1 1.6 88 96-183 211-307 (482)
90 KOG4341 F-box protein containi 66.5 2.1 4.6E-05 37.1 0.3 136 97-234 292-437 (483)
91 PRK14758 hypothetical protein; 37.9 55 0.0012 16.2 2.9 20 1-20 1-20 (27)
92 smart00367 LRR_CC Leucine-rich 37.9 24 0.00053 17.1 1.3 12 171-182 2-13 (26)
93 TIGR00864 PCC polycystin catio 35.2 25 0.00054 38.2 2.0 34 129-162 1-34 (2740)
94 KOG4341 F-box protein containi 34.2 39 0.00084 29.7 2.7 59 200-258 372-436 (483)
95 TIGR00864 PCC polycystin catio 29.5 36 0.00078 37.1 2.1 32 81-112 1-32 (2740)
96 PF15240 Pro-rich: Proline-ric 26.6 38 0.00082 25.9 1.3 20 11-30 5-24 (179)
97 PF12661 hEGF: Human growth fa 24.7 4.7 0.0001 16.5 -2.2 9 62-70 4-12 (13)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=3.7e-29 Score=238.62 Aligned_cols=240 Identities=35% Similarity=0.571 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCccc
Q 042660 10 FFFFSLHLLFVVVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTG 89 (261)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~ 89 (261)
++++.+++.+......++|..||++||+++ .+|.+. ...|... .++ | .|.||+|+....++.|++++|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~w~~~---~~~-c--~w~gv~c~~~~~v~~L~L~~~~i~~ 83 (968)
T PLN00113 12 LIFMLFFLFLNFSMLHAEELELLLSFKSSI-NDPLKY-LSNWNSS---ADV-C--LWQGITCNNSSRVVSIDLSGKNISG 83 (968)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHhC-CCCccc-CCCCCCC---CCC-C--cCcceecCCCCcEEEEEecCCCccc
Confidence 444444444455566779999999999999 577665 6889643 343 5 9999999876678899999999999
Q ss_pred cCcccccCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhcc
Q 042660 90 RIVPALGSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMS 168 (261)
Q Consensus 90 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (261)
.++..+..+++|+.|++++|.+.+.+|..+. .+.+|++|++++|.+++.+|. +.+++|++|++++|.+.+..|..++
T Consensus 84 ~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 84 KISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred cCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh
Confidence 9999999999999999999999887776543 777788887777777655553 2355566666666666555555555
Q ss_pred CCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc-cCCCCCCCCEE
Q 042660 169 ELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP-SFGMLPNLKVL 228 (261)
Q Consensus 169 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L 228 (261)
.+++|++|++++|.+.+.+|..+..+..+. ..+|+.|++++|.+.+..| .++.+++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 566666666666655555555444443220 1234555555555555444 45555555555
Q ss_pred EcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++++|.+++.+|..+ ..+.+|+.|++++|.+
T Consensus 242 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 242 DLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKL 272 (968)
T ss_pred ECcCceeccccChhH-hCCCCCCEEECcCCee
Confidence 555555554444432 3345556666655543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.2e-21 Score=187.18 Aligned_cols=181 Identities=36% Similarity=0.550 Sum_probs=103.2
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
+|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..++.+++|++|++++|.
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 45555555555566666666667777777776666666666666666666666666666666666666666666666666
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc-c
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP-S 218 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~-~ 218 (261)
+.+..|..++.+++|++|++++|.+++..|..+..+..+. ..+|+.|++++|.+.+.+| .
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh
Confidence 6666666666666666666666666666665555543331 1233444444444444433 3
Q ss_pred CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+..+++|+.|++++|.+++.+|..+ ..+++|+.|++++|.+
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKF 344 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhH-hcCCCCCEEECcCCCC
Confidence 4444444444444444444333322 2334455555555443
No 3
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=7.8e-22 Score=161.74 Aligned_cols=199 Identities=24% Similarity=0.249 Sum_probs=160.6
Q ss_pred CCCCc---ceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660 62 CPVSW---TGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL 128 (261)
Q Consensus 62 c~~~~---~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 128 (261)
|.|+- ..|.|..+ ...|+|+|..|+|+.+.+.+|+.+++|+.|||++|.|+.+.|.+|.+++.+.+|
T Consensus 41 C~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~L 120 (498)
T KOG4237|consen 41 CTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSL 120 (498)
T ss_pred cccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHH
Confidence 45555 55888753 356799999999998889999999999999999999999999999999998887
Q ss_pred EccC-CcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCC---------
Q 042660 129 NLSM-NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA--------- 198 (261)
Q Consensus 129 ~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~--------- 198 (261)
.+.+ |+|+......|.++.+++.|.+.-|++.....+.|..++++..|.+..|.+.......+..+..++
T Consensus 121 vlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 121 VLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred HhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 7666 999986677788888888888877777777777777777777777777766532222222222221
Q ss_pred ------------------------------------------------------------------------CCCccEEE
Q 042660 199 ------------------------------------------------------------------------NTNLEVLD 206 (261)
Q Consensus 199 ------------------------------------------------------------------------~~~L~~L~ 206 (261)
.++|++|+
T Consensus 201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 46899999
Q ss_pred cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|++|++++..+ +|.+...++.|.|..|++. .+....|.++..|++|+|++|+||
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeE
Confidence 99999998777 8999999999999999997 788888999999999999999875
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.1e-21 Score=166.29 Aligned_cols=179 Identities=26% Similarity=0.273 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
+.+.|.|+.|+++...+..|+++++|+.|++..|+|.-..-..|.++++|+.|.+..|.+.....+.|..+.++++|+|+
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 45577778888876667777778888888888887764444556666666666666666665555666666677777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~ 234 (261)
.|++...-..++.++..|++|++++|.|...-++.|.-.. +|++|+|++|+++...+ .|..+..|+.|+|+.|.
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-----kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-----KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcc-----cceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 7777666666666677777777777776655555554443 44777777777766555 56666666666666666
Q ss_pred CcccCcHHHHhCCCCccEEEccCccC
Q 042660 235 LFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++ .+.+..|.++++|++|||++|.+
T Consensus 353 i~-~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 353 ID-HLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred hH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence 65 56666666666666666666654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.76 E-value=6.3e-19 Score=151.30 Aligned_cols=192 Identities=25% Similarity=0.286 Sum_probs=140.6
Q ss_pred CCCCcceEEcCCC---------------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCC
Q 042660 62 CPVSWTGVSCDPE---------------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLN 126 (261)
Q Consensus 62 c~~~~~gv~c~~~---------------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 126 (261)
|+|.-.-..|+.. ..+..|++++|.++..-+..|.++++|+++++..|.++ .+|........++
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence 5667777777642 12237999999999888888999999999999999998 5676555666788
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEE
Q 042660 127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206 (261)
Q Consensus 127 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~ 206 (261)
.|+|.+|.|+....+++..++.|+.|||+.|.|+...-..|..-.++++|+|++|+|+..--..|..+. +|..|.
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln-----sL~tlk 203 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN-----SLLTLK 203 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccc-----hheeee
Confidence 888888888877777888888888888888888776666677777888888888888755444555553 457777
Q ss_pred cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
|+.|+++..++ .|+.+++|+.|+|..|+|. .+..-.|.++.+|+.|.|..|.+
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCc
Confidence 77777776666 6777777777777777765 44334455555555555555554
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=145.09 Aligned_cols=158 Identities=26% Similarity=0.394 Sum_probs=127.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCC-CCCCCcceEEcCCCC-----CeEEEEcCCCCccccCcccc
Q 042660 22 VLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTK-SCPVSWTGVSCDPES-----GSVNLSLSGNNFTGRIVPAL 95 (261)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~-~c~~~~~gv~c~~~~-----~~~~L~l~~n~l~~~~~~~~ 95 (261)
.+..++|..||.++|+.+ .+|.. .+|.+. .| .+.+.|.||.|.... ....|+|++|.+.|.+|..+
T Consensus 367 ~~t~~~~~~aL~~~k~~~-~~~~~---~~W~g~----~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i 438 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSL-GLPLR---FGWNGD----PCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDI 438 (623)
T ss_pred cccCchHHHHHHHHHHhc-CCccc---CCCCCC----CCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHH
Confidence 344578999999999998 34432 368752 22 012489999995311 25589999999999999999
Q ss_pred cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCC-CCCC
Q 042660 96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL-KNVE 174 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~ 174 (261)
..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.+++|+.|++++|.+.+.+|..+... .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887654 4667
Q ss_pred EEecccCcccccC
Q 042660 175 FVDLSFNRFHGGL 187 (261)
Q Consensus 175 ~L~l~~n~l~~~~ 187 (261)
.+++.+|......
T Consensus 519 ~l~~~~N~~lc~~ 531 (623)
T PLN03150 519 SFNFTDNAGLCGI 531 (623)
T ss_pred eEEecCCccccCC
Confidence 8888888755433
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.5e-19 Score=130.20 Aligned_cols=158 Identities=30% Similarity=0.446 Sum_probs=134.9
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
..+.|.+++|.++ .+|+.++.+.+|+.|++.+|++. .+|.++..+++|++|++..|++. ..|..|+.++.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 4457889999998 57778899999999999999998 68888999999999999999988 589999999999999999
Q ss_pred cCcccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660 156 KNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 156 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 234 (261)
+|++.. .+|.-|..+..|+.|+++.|.+. .+|..++++. +|+.|.+.+|.+-..+..++.+..|+.|.+++|.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt-----~lqil~lrdndll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLT-----NLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhc-----ceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence 998854 57888888889999999999985 6777788775 4599999999888554488889999999999999
Q ss_pred CcccCcHHH
Q 042660 235 LFGMIPEEL 243 (261)
Q Consensus 235 l~~~~~~~~ 243 (261)
++ .+|+++
T Consensus 185 l~-vlppel 192 (264)
T KOG0617|consen 185 LT-VLPPEL 192 (264)
T ss_pred ee-ecChhh
Confidence 98 788776
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=6.5e-19 Score=129.82 Aligned_cols=157 Identities=31% Similarity=0.498 Sum_probs=128.9
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660 95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174 (261)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 174 (261)
+.++.+++.|.+++|.++ ..|..+..+.+|+.|++++|++. .+|.+++.+++|+.|+++.|++ ...|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh-hcCccccCCCchhh
Confidence 445678888999999998 55666788999999999999998 4888899999999999998888 67788899999999
Q ss_pred EEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEE
Q 042660 175 FVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQEL 253 (261)
Q Consensus 175 ~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 253 (261)
.||+.+|++.. .+|..+..+. .|+.|+|++|.+.-.+|..+.+.+|+.|.++.|.+- ..|.++.. +..|+.|
T Consensus 106 vldltynnl~e~~lpgnff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrel 178 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLREL 178 (264)
T ss_pred hhhccccccccccCCcchhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHH
Confidence 99999998864 4566665554 458899999999866668899999999999999887 78888743 5678888
Q ss_pred EccCccCC
Q 042660 254 DLSGNGFT 261 (261)
Q Consensus 254 ~L~~N~ls 261 (261)
.+++|+++
T Consensus 179 hiqgnrl~ 186 (264)
T KOG0617|consen 179 HIQGNRLT 186 (264)
T ss_pred hcccceee
Confidence 88888764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=3.1e-17 Score=142.36 Aligned_cols=173 Identities=28% Similarity=0.318 Sum_probs=100.6
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
..|||++|+++ ..|..+....++-+|++++|+|..+....|.++..|-.||||+|++. .+|+.+..+..|++|+|++|
T Consensus 106 t~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCC
Confidence 35666666666 45666666666666666666666444444556666666666666665 35555566666666666666
Q ss_pred cccc-------------------------ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCcc
Q 042660 158 KLWG-------------------------DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGI 212 (261)
Q Consensus 158 ~l~~-------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l 212 (261)
.+.- .+|.++-.+.+|+.+|++.|.+. ..|+.+.++. +|+.|+||+|.|
T Consensus 184 PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-----~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 184 PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-----NLRRLNLSGNKI 257 (1255)
T ss_pred hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-----hhheeccCcCce
Confidence 5422 24444445555556666655553 3344444332 446667777766
Q ss_pred CccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 213 TGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 213 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+..-...+.+.+|+.|+++.|+++ .+|..+.+ +++|+.|.+.+|++
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKL 303 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcc
Confidence 644334455666666777777766 56665543 45666666666654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.59 E-value=7.2e-17 Score=140.11 Aligned_cols=174 Identities=25% Similarity=0.291 Sum_probs=119.7
Q ss_pred EEEcCCCCccc-cCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTG-RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
.+++..|++.. .+|+.+..+..|+.||+++|++. ..|..+..-+++-+|+||+|+|..+.-..|-+++.|-.|||++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 57788888864 48889999999999999999999 78888888899999999999998644445678899999999999
Q ss_pred ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-----------------------CCCccEEEcccCccCc
Q 042660 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-----------------------NTNLEVLDLGDNGITG 214 (261)
Q Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-----------------------~~~L~~L~Ls~n~l~~ 214 (261)
++ ..+|.....+..|++|+|++|.+..- .+.+++++. ..+|..+|+|.|.+.
T Consensus 161 rL-e~LPPQ~RRL~~LqtL~Ls~NPL~hf---QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp- 235 (1255)
T KOG0444|consen 161 RL-EMLPPQIRRLSMLQTLKLSNNPLNHF---QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP- 235 (1255)
T ss_pred hh-hhcCHHHHHHhhhhhhhcCCChhhHH---HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-
Confidence 99 55666678888999999999977421 111222210 124455566666555
Q ss_pred cCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 215 ELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 215 ~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
..| .+..+++|+.|+|++|+|+ .+.... ..+.+|.+|++|.|++
T Consensus 236 ~vPecly~l~~LrrLNLS~N~it-eL~~~~-~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKIT-ELNMTE-GEWENLETLNLSRNQL 280 (1255)
T ss_pred cchHHHhhhhhhheeccCcCcee-eeeccH-HHHhhhhhhccccchh
Confidence 333 5555556666666666555 222211 1123555566665554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=2.6e-13 Score=124.65 Aligned_cols=166 Identities=25% Similarity=0.382 Sum_probs=92.2
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|+++. +|..+. .+|++|++++|.++. +|..+. ..|+.|++++|.+. .+|..+. .+|+.|+++
T Consensus 200 ~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 200 QITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred CCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 34467777777763 444333 367777777777663 444332 35666666666666 3454443 356777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCcccc--------------ccccCCCCCccEEEcccCccCccCccCCC
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD--------------NVSSIANTNLEVLDLGDNGITGELPSFGM 221 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--------------~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 221 (261)
+|++.. +|..+. ++|+.|++++|.+++ +|..+. .++....++|+.|++++|.+++.+..+
T Consensus 271 ~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l-- 344 (754)
T PRK15370 271 HNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL-- 344 (754)
T ss_pred CCccCc-cccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--
Confidence 776653 444332 367777777776653 222111 000001235666666666666433233
Q ss_pred CCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 222 LPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 222 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.++|+.|++++|+|+ .+|..+ .++|+.|++++|.+
T Consensus 345 ~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~L 379 (754)
T PRK15370 345 PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNAL 379 (754)
T ss_pred cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcC
Confidence 246777777777776 566544 24667777777665
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=4.5e-15 Score=124.78 Aligned_cols=186 Identities=28% Similarity=0.319 Sum_probs=112.7
Q ss_pred CCeEEEEcCCCCccccCcccccCCCC---CCEEECcCCcCcC----CCCccccCC-CCCCEEEccCCcCcCC----CCcc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISS---LQYLDLSNNKFIG----PIPGRITDL-WGLNYLNLSMNGFKGG----FPGN 142 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~ 142 (261)
.....|++++|.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++. ++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 35667888888887655555544444 8888888887763 222334555 7788888888887732 2334
Q ss_pred ccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-
Q 042660 143 LRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP- 217 (261)
Q Consensus 143 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~- 217 (261)
+..+++|++|++++|.+.+. ++..+...++|++|++++|.+.+.....+..... ..++|++|++++|.+++...
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHH
Confidence 55667788888888877642 3334455668888888888776432222211110 12456888888887765211
Q ss_pred cC-----CCCCCCCEEEcccCcCcccCcHH---HHhCCCCccEEEccCccCC
Q 042660 218 SF-----GMLPNLKVLRLGSNQLFGMIPEE---LLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 218 ~~-----~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~N~ls 261 (261)
.+ ...+.|+.|++++|.+++..... .+...++|+.+++++|+++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 11 12357888888888776322221 2233357788888887764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=2e-16 Score=130.69 Aligned_cols=171 Identities=30% Similarity=0.403 Sum_probs=74.4
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.++.++|.+. .+|+.+..+..+..++.++|.+. .+|+.++.+..+..++..+|.++. .|+.++.+.++..+++.+|+
T Consensus 95 ~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 95 SLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred HhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccc
Confidence 4455555554 34445555555555555555544 333334444444444444444442 33333333333333333333
Q ss_pred cccc----------------------cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 159 LWGD----------------------IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 159 l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
+... +|+.++.+.+|..|++..|.+. .+| .|..++ .|++++++.|++.-.+
T Consensus 172 l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs-----~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 172 LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCS-----LLKELHVGENQIEMLP 244 (565)
T ss_pred hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccH-----HHHHHHhcccHHHhhH
Confidence 3222 2333333333333333333332 112 122221 2355555555554222
Q ss_pred c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
. ...+++++..|||+.|+++ .+|.+++. +++|..||+|+|.||
T Consensus 245 ae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 245 AEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS 288 (565)
T ss_pred HHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc
Confidence 2 2335555555555555555 55555432 345555555555543
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=8.8e-15 Score=123.04 Aligned_cols=184 Identities=30% Similarity=0.351 Sum_probs=134.3
Q ss_pred CeEEEEcCCCCccc------cCcccccCCCCCCEEECcCCcCcCCCCccccCCCC---CCEEEccCCcCcC----CCCcc
Q 042660 76 GSVNLSLSGNNFTG------RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWG---LNYLNLSMNGFKG----GFPGN 142 (261)
Q Consensus 76 ~~~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~p~~ 142 (261)
....++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..+.. |++|++++|++++ .+...
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 45678888887762 23456777889999999999998666666655555 9999999999873 23344
Q ss_pred ccCC-CCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCcccc-ccccCCCCCccEEEcccCccCccC
Q 042660 143 LRNL-QQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGAD-NVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 143 ~~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
+..+ ++|+.|++++|.+++. .+..+..++.|++|++++|.+++.....+. .+.. .++|++|++++|.+++..
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHH
Confidence 5566 8999999999999743 445567778999999999999753211111 1211 257899999999987532
Q ss_pred ----c-cCCCCCCCCEEEcccCcCcccCcHHHHhC----CCCccEEEccCccCC
Q 042660 217 ----P-SFGMLPNLKVLRLGSNQLFGMIPEELLES----VIPIQELDLSGNGFT 261 (261)
Q Consensus 217 ----~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~N~ls 261 (261)
+ .+..+++|+.|++++|.+++.....+... ...|+.|++++|.++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 2 45678899999999999986444444433 268999999999874
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.45 E-value=4.4e-16 Score=128.65 Aligned_cols=174 Identities=30% Similarity=0.422 Sum_probs=137.6
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (261)
.+.+++++|++. ..|++++.+..++.++.++|++. .+|+++..+.++..++.++|++. ..|+.++.+..+..++..+
T Consensus 70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence 458899999998 68889999999999999999999 78999999999999999999998 5888899999999999999
Q ss_pred CccccccchhccCCCCCCEEecccCcccc----------------------cCCccccccccCCCCCccEEEcccCccCc
Q 042660 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHG----------------------GLGVGADNVSSIANTNLEVLDLGDNGITG 214 (261)
Q Consensus 157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~ 214 (261)
|++.. .|+.+..+.++..+++.+|.+.. .+|..++.+. +|+-|+|..|.+.
T Consensus 147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~-----~L~~LyL~~Nki~- 219 (565)
T KOG0472|consen 147 NQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE-----SLELLYLRRNKIR- 219 (565)
T ss_pred ccccc-CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh-----hhHHHHhhhcccc-
Confidence 99955 44445555555555555554442 4444454443 3466777777776
Q ss_pred cCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 215 ELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 215 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
..|.|.++..|.+|+++.|+|. .+|.+..+++.++..||+.+|+++
T Consensus 220 ~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 5567777777888888888887 788888888889999999999874
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=2e-12 Score=125.41 Aligned_cols=178 Identities=23% Similarity=0.293 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
+.+.|++.++.+. .++..+..+++|+.++++++.....+|. +..+++|++|++++|..-..+|..+..+++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4456777777766 4566666777777777777654445553 5667777777777766545677777777777777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccC--------------------Cccc--ccccc-----------------
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGL--------------------GVGA--DNVSS----------------- 196 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------p~~~--~~~~~----------------- 196 (261)
+|.....+|..+ ++++|+.|++++|...+.+ |..+ ..+..
T Consensus 690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccc
Confidence 765444455433 4455555555554332222 2111 00000
Q ss_pred ------CCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 197 ------IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 197 ------l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
..+++|+.|++++|...+.+| .++.+++|+.|++++|..-+.+|..+ .+++|+.|++++|
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c 835 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC 835 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence 002356777777776555566 67777778888887764333555543 3445555555554
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=1.7e-12 Score=118.94 Aligned_cols=76 Identities=26% Similarity=0.248 Sum_probs=51.5
Q ss_pred CCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCcc
Q 042660 172 NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQ 251 (261)
Q Consensus 172 ~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~ 251 (261)
+|+.|++++|.+++ +|.. ..+|+.|++++|++++.+.. ..+|+.|++++|+++ .+|..+ ..+.+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l--------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl-~~L~~L~ 448 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL--------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESL-IHLSSET 448 (788)
T ss_pred ccceEEecCCcccC-CCCc--------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHH-hhccCCC
Confidence 45566666666552 2221 13567888888887753322 246778888889988 788775 3567899
Q ss_pred EEEccCccCC
Q 042660 252 ELDLSGNGFT 261 (261)
Q Consensus 252 ~L~L~~N~ls 261 (261)
.|++++|+|+
T Consensus 449 ~LdLs~N~Ls 458 (788)
T PRK15387 449 TVNLEGNPLS 458 (788)
T ss_pred eEECCCCCCC
Confidence 9999999985
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=4.4e-13 Score=123.09 Aligned_cols=76 Identities=28% Similarity=0.413 Sum_probs=41.7
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
+...|++++|+++ .+|..+. ..|+.|++++|.+. .+|..+. .+|+.|++++|.++. +|..+. .+|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence 4456777777776 3444332 35666666666665 3444332 356666666666653 444332 355566666
Q ss_pred cCccc
Q 042660 156 KNKLW 160 (261)
Q Consensus 156 ~n~l~ 160 (261)
+|+++
T Consensus 292 ~N~Lt 296 (754)
T PRK15370 292 DNSIR 296 (754)
T ss_pred CCccc
Confidence 55554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=5.7e-15 Score=121.79 Aligned_cols=177 Identities=25% Similarity=0.258 Sum_probs=131.5
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCC------------------------CCEEEccC
Q 042660 78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWG------------------------LNYLNLSM 132 (261)
Q Consensus 78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~------------------------L~~L~l~~ 132 (261)
.+|||++|+|+-+-|.+|.+++.+..|-+.+ |+|+......|.++.. +..|.+.+
T Consensus 94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD 173 (498)
T KOG4237|consen 94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD 173 (498)
T ss_pred ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence 3899999999999999999999887776665 8887655555555544 44445555
Q ss_pred CcCcCCCCccccCCCCCCEEEcccCccc----------------------------------------------------
Q 042660 133 NGFKGGFPGNLRNLQQLKVLDLRKNKLW---------------------------------------------------- 160 (261)
Q Consensus 133 n~l~~~~p~~~~~l~~L~~L~l~~n~l~---------------------------------------------------- 160 (261)
|.+.......|..+..++.+.+..|.+.
T Consensus 174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s 253 (498)
T KOG4237|consen 174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS 253 (498)
T ss_pred hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence 5554322235556666666666555410
Q ss_pred ---------cccc-hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEE
Q 042660 161 ---------GDIG-GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLR 229 (261)
Q Consensus 161 ---------~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~ 229 (261)
+..| ..|..+++|+.|++++|.+++.-+..|..... +++|+|..|++..... .|.++..|+.|+
T Consensus 254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~-----l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE-----LQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh-----hhhhhcCcchHHHHHHHhhhccccceeee
Confidence 0011 23456889999999999999887777777764 5999999999986555 788999999999
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
|++|+|+ .+.+..|..+..|.+|.+-.|+|
T Consensus 329 L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 329 LYDNQIT-TVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecCCeeE-EEecccccccceeeeeehccCcc
Confidence 9999999 67777788888999999999886
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=2.7e-14 Score=128.69 Aligned_cols=130 Identities=32% Similarity=0.354 Sum_probs=90.7
Q ss_pred CCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCC
Q 042660 122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN 201 (261)
Q Consensus 122 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~ 201 (261)
++.|+.|++.+|.++...-+.+-+..+|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..+. .
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~-----~ 431 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLG-----R 431 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhh-----h
Confidence 334677777777777666666777788888888888886565666778888888888888886 5566665554 3
Q ss_pred ccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 202 LEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 202 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
|++|...+|++. ..|.+..+++|+.+|++.|+++...-++.. ..++|++||+++|.
T Consensus 432 L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCcee-echhhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 477888888877 445777778888888888887632222221 12578888888875
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=1.1e-11 Score=113.62 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=17.5
Q ss_pred CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+|+.|++++|.|+ .+|.. ..+|+.|++++|.|
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l----~s~L~~LdLS~N~L 414 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVL----PSELKELMVSGNRL 414 (788)
T ss_pred ccceEEecCCccc-CCCCc----ccCCCEEEccCCcC
Confidence 4556666666665 34421 23566666666655
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=1.5e-11 Score=119.42 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=32.3
Q ss_pred CccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
+|+.|++++|......|.. ..+|+.|+|++|.++ .+|..+ ..+++|+.|++++|
T Consensus 826 sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~-~iP~si-~~l~~L~~L~L~~C 879 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE-EVPWWI-EKFSNLSFLDMNGC 879 (1153)
T ss_pred ccCEEECCCCCcccccccc--ccccCEeECCCCCCc-cChHHH-hcCCCCCEEECCCC
Confidence 3455555554332233311 245777777777777 676654 45678888888874
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=2.1e-14 Score=123.44 Aligned_cols=159 Identities=30% Similarity=0.364 Sum_probs=76.7
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
+..|++.|++. .+|..+..+..|+.+.+.+|.+. .+|..+.++..|++++++.|+++ .+|..+..++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34555666555 34444444444555555555544 34444555555555555555554 2444444443 455555555
Q ss_pred ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-----------------CCCccEEEcccCccCccCccCC
Q 042660 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-----------------NTNLEVLDLGDNGITGELPSFG 220 (261)
Q Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-----------------~~~L~~L~Ls~n~l~~~~~~~~ 220 (261)
++ +.+|..++..+.|..||.+.|++. ++|..+..+.++. .-.|..||+|.|++..++-.|.
T Consensus 154 kl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 154 KL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhh
Confidence 54 333444444445555555555543 2333333332220 0134556666666653322555
Q ss_pred CCCCCCEEEcccCcCcccCcHHH
Q 042660 221 MLPNLKVLRLGSNQLFGMIPEEL 243 (261)
Q Consensus 221 ~~~~L~~L~L~~n~l~~~~~~~~ 243 (261)
.+.+|++|-|.+|.+. .-|.++
T Consensus 232 ~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred hhhhheeeeeccCCCC-CChHHH
Confidence 6666666666666665 344444
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=4.1e-12 Score=115.71 Aligned_cols=114 Identities=27% Similarity=0.400 Sum_probs=89.8
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP 217 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 217 (261)
+|.++|.+|..+.... .++..+++.+|...+..|
T Consensus 499 ~N~l~g~iP~~l~~~~----~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRL----LHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhcc----ccCceEEecCCccccCCC
Confidence 8888888887765432 244677777776544333
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=6.5e-14 Score=126.31 Aligned_cols=156 Identities=30% Similarity=0.390 Sum_probs=85.4
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
+++++++++|++++ +|+.+..+.+|+.+...+|+++ .+|..+..+.+|+.+....|.+. -+|......+.|++|+|.
T Consensus 242 nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 45555555555553 3355555555555555555554 34555555555555555555552 233334445555555555
Q ss_pred cCcccccCCccccccccC---------------------CCCCccEEEcccCccCcc-CccCCCCCCCCEEEcccCcCcc
Q 042660 180 FNRFHGGLGVGADNVSSI---------------------ANTNLEVLDLGDNGITGE-LPSFGMLPNLKVLRLGSNQLFG 237 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l---------------------~~~~L~~L~Ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~ 237 (261)
.|++.. +|+.+-..... ..+.|+.|++.+|.+++. .|.+.+..+|+.|+|++|.+.
T Consensus 319 ~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 319 SNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 555432 22211111100 023567777777777653 446666777777777777776
Q ss_pred cCcHHHHhCCCCccEEEccCccC
Q 042660 238 MIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.+|...+..+..|+.|+||+|++
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL 419 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKL 419 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchh
Confidence 67776666666777777777765
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.1e-11 Score=94.21 Aligned_cols=128 Identities=29% Similarity=0.291 Sum_probs=43.2
Q ss_pred cCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660 96 GSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 174 (261)
.+...+++|++.+|.|+.+. .++ .+.+|+.|++++|.++. + +.+..++.|++|++++|.++...+.....+++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 34456788888888887432 243 46778888888888874 2 2466778888888888888654333234577888
Q ss_pred EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcc
Q 042660 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLG 231 (261)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~ 231 (261)
+|++++|++... ..+..+.. .++|+.|+|.+|.++...- .+..+|+|+.||-.
T Consensus 92 ~L~L~~N~I~~l--~~l~~L~~--l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 92 ELYLSNNKISDL--NELEPLSS--LPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EEE-TTS---SC--CCCGGGGG---TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EEECcCCcCCCh--HHhHHHHc--CCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888888887531 12333332 2567777777777764322 34556777776543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.5e-11 Score=105.22 Aligned_cols=172 Identities=37% Similarity=0.499 Sum_probs=122.1
Q ss_pred CeEEEEcCCCCccccCcccccCCC-CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSIS-SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....+++.+|+++ .+++....+. +|+.|++++|++. .+|..+..++.|+.|++++|.++. +|...+..+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheec
Confidence 3457888888888 4555666664 8888888888888 444556788888888888888884 5665557788888888
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 234 (261)
++|++.. +|........|+.+.+++|.+. ..+..+... .++..+.+.+|++...+..++.++.++.|++++|.
T Consensus 194 s~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-----~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 194 SGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNL-----KNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred cCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhc-----ccccccccCCceeeeccchhccccccceecccccc
Confidence 8888844 4444344556888888888532 223333333 34577778888877543466777889999999999
Q ss_pred CcccCcHHHHhCCCCccEEEccCccC
Q 042660 235 LFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++ .++. +....+++.|++++|.+
T Consensus 267 i~-~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 IS-SISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cc-cccc--ccccCccCEEeccCccc
Confidence 98 5655 44556889999988865
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=4.6e-12 Score=109.27 Aligned_cols=144 Identities=29% Similarity=0.385 Sum_probs=95.9
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.++|+.|+++ .+|..++.++ |+.|-+++|+++ .+|..++.+..|..|+.+.|.+.. +|..++++.+|+.|.+..|.
T Consensus 125 ~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 125 FLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNH 200 (722)
T ss_pred Hhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhh
Confidence 4566666665 4555555544 566666666666 455556666666667777776663 56666667777777777776
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccC---CCCCCCCEEEcccCc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSF---GMLPNLKVLRLGSNQ 234 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~~~L~~L~L~~n~ 234 (261)
+. .+|+.+..++ |..||++.|+++ .+|..|.++. .|++|-|.+|.+...+..+ +...-.++|+.+.++
T Consensus 201 l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~-----~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 201 LE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMR-----HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhh-----hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 63 3455555444 888999999997 7888888885 5599999999998443332 233346778887774
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=7.1e-11 Score=89.78 Aligned_cols=128 Identities=29% Similarity=0.310 Sum_probs=50.9
Q ss_pred ccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccc-ccccc
Q 042660 119 ITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGA-DNVSS 196 (261)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~~ 196 (261)
+.+..++++|+|.+|.|+. + +.++ .+.+|+.|++++|.+.... .+..++.|++|++++|.++.. +..+ ..+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i-~~~l~~~l-- 87 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSI-SEGLDKNL-- 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S--CHHHHHH---
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcc-ccchHHhC--
Confidence 3455678999999999985 2 3455 5789999999999997642 467789999999999999732 2222 123
Q ss_pred CCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccC--cHHHHhCCCCccEEEcc
Q 042660 197 IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMI--PEELLESVIPIQELDLS 256 (261)
Q Consensus 197 l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~~L~~L~L~ 256 (261)
++|++|++++|++..... .+..+++|+.|++.+|+++..- ...++..+++|+.||-.
T Consensus 88 ---p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 88 ---PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp ---TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ---CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 577999999999986433 6778999999999999998432 23355667899988753
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=1.5e-11 Score=98.85 Aligned_cols=131 Identities=33% Similarity=0.365 Sum_probs=102.2
Q ss_pred CCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 97 SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 97 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
....|+++|+++|.|+ .+.++..-.|.++.|++++|++.. -+.+..+++|+.||+++|.+ ..+..+-..+.+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchh-HhhhhhHhhhcCEeee
Confidence 3456888999999998 566677778899999999999874 23377889999999999988 4445566678889999
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCccc
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~ 238 (261)
.+++|.+. +++.+.++ -+|..||+++|+|..... .++++|-|+++.|.+|.+.+.
T Consensus 358 ~La~N~iE-----~LSGL~KL--YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIE-----TLSGLRKL--YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHh-----hhhhhHhh--hhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 99999884 33333333 356999999999986443 789999999999999999743
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=3.1e-10 Score=71.24 Aligned_cols=59 Identities=36% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCc
Q 042660 124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182 (261)
Q Consensus 124 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 182 (261)
+|++|++++|+++...+..|.++++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555554444333444455555555555555544444445555555555555444
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=2.7e-10 Score=71.54 Aligned_cols=61 Identities=39% Similarity=0.517 Sum_probs=50.6
Q ss_pred CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 99 SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
++|++|++++|++..+.+..|.++++|++|++++|.++...|..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888877777888888888888888888877777888888888888888865
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.3e-10 Score=96.07 Aligned_cols=177 Identities=24% Similarity=0.199 Sum_probs=106.6
Q ss_pred EEEcCCCCccccCc-ccccCCCCCCEEECcCCcCcCCC--CccccCCCCCCEEEccCCcCcCCCCccc-cCCCCCCEEEc
Q 042660 79 NLSLSGNNFTGRIV-PALGSISSLQYLDLSNNKFIGPI--PGRITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVLDL 154 (261)
Q Consensus 79 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l 154 (261)
++.|.+..+....- .....+++++.||+++|-+.... -.....+++|+.|+++.|++........ ..+++|+.|.+
T Consensus 125 ~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l 204 (505)
T KOG3207|consen 125 EISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVL 204 (505)
T ss_pred heeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEe
Confidence 55666666653211 35567788888888888776321 1223568888888888888753222211 24577888888
Q ss_pred ccCccccccc-hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC--ccCCCCCCCCEEEcc
Q 042660 155 RKNKLWGDIG-GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLG 231 (261)
Q Consensus 155 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~ 231 (261)
+.|.++.... ..+..+|+|+.|++..|..... ...+.--++.|++|+|++|++.... +..+.++.|+.|+++
T Consensus 205 ~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-----~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 205 NSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-----KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred ccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-----ecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 8888764432 3345678888888887753211 1111111245688888888776544 356677777777777
Q ss_pred cCcCcccCcHHH-----HhCCCCccEEEccCccC
Q 042660 232 SNQLFGMIPEEL-----LESVIPIQELDLSGNGF 260 (261)
Q Consensus 232 ~n~l~~~~~~~~-----~~~~~~L~~L~L~~N~l 260 (261)
.+.+...--++. ....++|+.|+++.|++
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 777653211111 22335777777777776
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.91 E-value=1.1e-09 Score=94.99 Aligned_cols=170 Identities=36% Similarity=0.461 Sum_probs=125.9
Q ss_pred EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCC-CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLW-GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
++...+.+.. ....+..++.++.|++.+|.++. ++.....+. +|+.|++++|.+.. +|..+..++.|+.|++++|+
T Consensus 98 l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRS-NISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eecccccccc-CchhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCch
Confidence 5666666642 23344556789999999999994 444555664 89999999999984 66778899999999999999
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 238 (261)
+.. +|...+..+.|+.|++++|.++ .+|...... ..|+++.+++|.+...+..+..+..+..+.+.+|++. .
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-----~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~ 246 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-----SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-D 246 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhh-----hhhhhhhhcCCcceecchhhhhcccccccccCCceee-e
Confidence 954 4444457889999999999997 333332222 2469999999975545557788888889999999987 3
Q ss_pred CcHHHHhCCCCccEEEccCccCC
Q 042660 239 IPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 239 ~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.+ .....+..++.|++++|.++
T Consensus 247 ~~-~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 247 LP-ESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred cc-chhccccccceecccccccc
Confidence 32 33345667999999999874
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.9e-10 Score=95.47 Aligned_cols=181 Identities=23% Similarity=0.215 Sum_probs=122.7
Q ss_pred CeEEEEcCCCCcccc--CcccccCCCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCC-CccccCCCCCCE
Q 042660 76 GSVNLSLSGNNFTGR--IVPALGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKV 151 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~ 151 (261)
....|||+.|-+... +..-...+++|+.|+++.|.+........ ..++.|+.|.++.|.++... -.....+|+|+.
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~ 226 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV 226 (505)
T ss_pred cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence 556899999988753 22334578999999999999874433322 35788999999999987422 223346789999
Q ss_pred EEcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCcc-CccC------CCCC
Q 042660 152 LDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGE-LPSF------GMLP 223 (261)
Q Consensus 152 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~------~~~~ 223 (261)
|++..|.....-......++.|+.|||++|++-.... ...+. .+.|+.|.++.+++... .|.. ..++
T Consensus 227 L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~-----l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 227 LYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT-----LPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred hhhhcccccceecchhhhhhHHhhccccCCccccccccccccc-----ccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 9999996444444455667889999999998853211 11222 35678889998888763 2222 4578
Q ss_pred CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|++|++..|++.+.-...-...+.+|+.|.+..|.++
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 89999999999963222222233456777776666653
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=2.4e-10 Score=91.92 Aligned_cols=130 Identities=25% Similarity=0.290 Sum_probs=97.1
Q ss_pred CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCC
Q 042660 121 DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANT 200 (261)
Q Consensus 121 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~ 200 (261)
....|+++|+++|.|+ .+.++..-.++++.|++++|.+.... .++.+++|+.||+++|.++... .+ .....
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~-----Gw-h~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECV-----GW-HLKLG 352 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhh-----hh-Hhhhc
Confidence 3457899999999998 47777788899999999999995543 3788999999999999987321 11 11124
Q ss_pred CccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcH-HHHhCCCCccEEEccCccCC
Q 042660 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPE-ELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~L~~N~ls 261 (261)
+.+.|.|++|.+. ....+..+-+|..|++++|+|. ...+ .-+..++-|.++.|.+|+++
T Consensus 353 NIKtL~La~N~iE-~LSGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE-TLSGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred CEeeeehhhhhHh-hhhhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence 6699999999987 4445667778999999999996 3321 12344567888888898874
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.77 E-value=1.5e-09 Score=88.80 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=8.2
Q ss_pred CCCCCCCCEEEcccCcCc
Q 042660 219 FGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 219 ~~~~~~L~~L~L~~n~l~ 236 (261)
+..+++|+.+++++|.+.
T Consensus 237 L~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLE 254 (382)
T ss_pred hcccchheeecccccccc
Confidence 334444444444444444
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.71 E-value=3.1e-09 Score=86.96 Aligned_cols=185 Identities=26% Similarity=0.257 Sum_probs=127.3
Q ss_pred CCeEEEEcCCCCcccc----CcccccCCCCCCEEECcCCcC---cCCCCc-------cccCCCCCCEEEccCCcCcCCCC
Q 042660 75 SGSVNLSLSGNNFTGR----IVPALGSISSLQYLDLSNNKF---IGPIPG-------RITDLWGLNYLNLSMNGFKGGFP 140 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l---~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~p 140 (261)
...+.++|++|.+... +...+.+.+.|+..++++-.- ...+|. ++...++|++++||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 3556899999999754 455567778888888875432 223443 34567799999999999875545
Q ss_pred ccc----cCCCCCCEEEcccCccccccc-------------hhccCCCCCCEEecccCcccccCCccccccccCCCCCcc
Q 042660 141 GNL----RNLQQLKVLDLRKNKLWGDIG-------------GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203 (261)
Q Consensus 141 ~~~----~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~ 203 (261)
..| ..+..|++|.|.+|.+...-. +..+.-+.|+++..++|++....-..+...- -..+.|+
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~-~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF-QSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH-Hhccccc
Confidence 443 467899999999998843322 2234457899999999998533222222211 1135789
Q ss_pred EEEcccCccCcc----Cc-cCCCCCCCCEEEcccCcCcccCcHHH---HhCCCCccEEEccCccC
Q 042660 204 VLDLGDNGITGE----LP-SFGMLPNLKVLRLGSNQLFGMIPEEL---LESVIPIQELDLSGNGF 260 (261)
Q Consensus 204 ~L~Ls~n~l~~~----~~-~~~~~~~L~~L~L~~n~l~~~~~~~~---~~~~~~L~~L~L~~N~l 260 (261)
.+.++.|.|... .. .+..+++|+.|+|+.|.|+-.....+ +..+++|+.+++++|.+
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 999999998631 12 57889999999999999984443333 34455788888888765
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=4.6e-10 Score=99.76 Aligned_cols=127 Identities=28% Similarity=0.287 Sum_probs=78.3
Q ss_pred CCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCcc
Q 042660 124 GLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE 203 (261)
Q Consensus 124 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~ 203 (261)
.|.+.+.++|++. ....++.-++.++.|+|+.|+++..- .+..++.|++||++.|.+.. +..+... .+.|+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-----vp~l~~~-gc~L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-----VPQLSMV-GCKLQ 235 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-----ccccchh-hhhhe
Confidence 3555666666665 35556666677777777777775542 56667777777777777752 1122111 13467
Q ss_pred EEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 204 VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 204 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.|.+.+|.++ ..-.+.++.+|+.||+++|-+.+.-....+..+..|+.|.|.+|++
T Consensus 236 ~L~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 236 LLNLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7777777776 3334456677777777777776543333333344677777777765
No 40
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=3.1e-08 Score=79.80 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=98.6
Q ss_pred EEEcCCCCccc--cCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC-CCccccCCCCCCEEEcc
Q 042660 79 NLSLSGNNFTG--RIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG-FPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 79 ~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~l~ 155 (261)
++||.+|.|+. .+...+.++++|+.|++++|.+...+...-....+|++|.|.+..+... ....+..++.++.|.++
T Consensus 75 elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS 154 (418)
T KOG2982|consen 75 ELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMS 154 (418)
T ss_pred hhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence 67777777764 2444556777788888888877644433223556777777777766532 23344567777777777
Q ss_pred cCcccccc--chhccCC-CCCCEEecccCcccccCCccccccccC--CCCCccEEEcccCccCccCc--cCCCCCCCCEE
Q 042660 156 KNKLWGDI--GGIMSEL-KNVEFVDLSFNRFHGGLGVGADNVSSI--ANTNLEVLDLGDNGITGELP--SFGMLPNLKVL 228 (261)
Q Consensus 156 ~n~l~~~~--~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L 228 (261)
.|.+.... .+....+ +.++++++..|... .|.+..++ .++++..+.+..|.+...-. .....+.+..|
T Consensus 155 ~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-----~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 155 DNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-----LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred cchhhhhccccccccccchhhhhhhcCCcHHH-----HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 77442210 0011111 13334443333221 11111110 03455666666666654322 44556666677
Q ss_pred EcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|+.|+|......+.+...+.|+.|.+++|+++
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 777777765555555566667777777777653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.54 E-value=1.2e-08 Score=88.96 Aligned_cols=99 Identities=35% Similarity=0.325 Sum_probs=41.4
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.+++.+|.|... ...+..+++|++|++++|.|+.+.+ +..++.|+.|++++|.++. ...+..+..|+.+++++|.
T Consensus 99 ~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 99 ALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDLSYNR 173 (414)
T ss_pred eeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhcccCCcch
Confidence 444444444421 1113344444555555555443322 2333344445555554442 1222334444455555554
Q ss_pred cccccc-hhccCCCCCCEEecccCcc
Q 042660 159 LWGDIG-GIMSELKNVEFVDLSFNRF 183 (261)
Q Consensus 159 l~~~~~-~~~~~l~~L~~L~l~~n~l 183 (261)
+...-+ . ...+.+++.+++.+|.+
T Consensus 174 i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 174 IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhhhhhhh-hhhccchHHHhccCCch
Confidence 433322 1 23344444444444444
No 42
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.49 E-value=2.1e-07 Score=53.72 Aligned_cols=42 Identities=45% Similarity=0.991 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcC
Q 042660 26 ESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCD 72 (261)
Q Consensus 26 ~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~ 72 (261)
++|+.||++||+++..+|.+ .+.+|+... .. .+|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~-~l~~W~~~~--~~--~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSG-VLSSWNPSS--DS--DPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-C-CCTT--TT----S---CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCc-ccccCCCcC--CC--CCeeeccEEeC
Confidence 57999999999999666755 489999753 12 24599999995
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.40 E-value=2.4e-08 Score=87.19 Aligned_cols=169 Identities=32% Similarity=0.361 Sum_probs=108.7
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.+.+..|.+.. +-..+..+.+++.+++.+|.|..+.. .+..+++|++|++++|.|+.. ..+..++.|+.|++++|.
T Consensus 76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hhccchhhhhh-hhcccccccceeeeeccccchhhccc-chhhhhcchheeccccccccc--cchhhccchhhheeccCc
Confidence 45566666663 33446778899999999999985443 267789999999999999863 235667779999999999
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc---------------------
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--------------------- 217 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--------------------- 217 (261)
+... ..+..+..|+.+++++|.+...-+.....+ ..++.+++.+|.+.....
T Consensus 152 i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-----~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 152 ISDI--SGLESLKSLKLLDLSYNRIVDIENDELSEL-----ISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred chhc--cCCccchhhhcccCCcchhhhhhhhhhhhc-----cchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence 9654 234458899999999999874433101222 345666777766542111
Q ss_pred cCCCCC--CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 218 SFGMLP--NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 218 ~~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.+.... +|+.+++.+|.+. .++ ..+..+..+..+++.+|++
T Consensus 225 ~l~~~~~~~L~~l~l~~n~i~-~~~-~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 225 GLNELVMLHLRELYLSGNRIS-RSP-EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred CcccchhHHHHHHhcccCccc-ccc-ccccccccccccchhhccc
Confidence 001111 2566677777665 332 1123345667777777665
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.38 E-value=2.3e-09 Score=95.42 Aligned_cols=125 Identities=29% Similarity=0.300 Sum_probs=65.0
Q ss_pred CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
|...+++.|.+. ....++.-++.++.|+|++|+++.. +.+..+++|++||+++|.+.. +|..-..-..|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheeeeecc
Confidence 444455555555 3344455555666666666666532 255566666666666666632 222211112266666666
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCc
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~ 236 (261)
|.++ .+..+.++ .+|+.||+++|-+.+.-. .++.+..|..|+|.+|.+-
T Consensus 242 N~l~-----tL~gie~L--ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALT-----TLRGIENL--KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHH-----hhhhHHhh--hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 6664 23333332 345666666666654322 3445556666666666653
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.24 E-value=2.7e-06 Score=65.02 Aligned_cols=57 Identities=26% Similarity=0.233 Sum_probs=25.5
Q ss_pred CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
...+||++|.+... ..|..++.|++|.+.+|+|+..-|.--.-+++|..|.+.+|.|
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 34455555555421 1234444555555555555543333222334455555555444
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.23 E-value=4.6e-07 Score=72.32 Aligned_cols=160 Identities=22% Similarity=0.229 Sum_probs=88.2
Q ss_pred CeEEEEcCCCCccccC----cccccCCCCCCEEECcCCcCc---CCCC-------ccccCCCCCCEEEccCCcCcCCCCc
Q 042660 76 GSVNLSLSGNNFTGRI----VPALGSISSLQYLDLSNNKFI---GPIP-------GRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~---~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
..++++|++|.|...- ...+++-.+|+..+++.-... ..++ .++.+++.|+..+||+|.+....|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 4458888888887543 334555567777777653322 1122 2345678888888888888765554
Q ss_pred c----ccCCCCCCEEEcccCcccccc----ch---------hccCCCCCCEEecccCcccccCCccccccccCCCCCccE
Q 042660 142 N----LRNLQQLKVLDLRKNKLWGDI----GG---------IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204 (261)
Q Consensus 142 ~----~~~l~~L~~L~l~~n~l~~~~----~~---------~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~ 204 (261)
. ++..+.|++|.+++|.+...- .+ ....-|.|+++..+.|++-. .+........-...+|+.
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCcee
Confidence 3 345677888888888763221 11 11234677888887777742 111111110000124566
Q ss_pred EEcccCccCcc--Cc----cCCCCCCCCEEEcccCcCc
Q 042660 205 LDLGDNGITGE--LP----SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 205 L~Ls~n~l~~~--~~----~~~~~~~L~~L~L~~n~l~ 236 (261)
+.+.+|.|.-. .. .+..+.+|+.|+|+.|-|+
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 66666655421 00 1233455666666666655
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.16 E-value=1.2e-06 Score=82.61 Aligned_cols=105 Identities=30% Similarity=0.405 Sum_probs=86.0
Q ss_pred eEEEEcCCCC--ccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 77 SVNLSLSGNN--FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 77 ~~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
..+|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+|++|+++++.+. .+|..+.++..|.+|++
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 3366677775 44344455788999999999998877889999999999999999999998 68999999999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCc
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNR 182 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 182 (261)
..+.....+|.....+++|++|.+....
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccc
Confidence 9887666667777778999999886654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.6e-06 Score=49.30 Aligned_cols=36 Identities=47% Similarity=0.657 Sum_probs=27.5
Q ss_pred CccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660 201 NLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 236 (261)
+|++|++++|+++..++.+..+++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 578888888888865556788888888888888887
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=1.2e-07 Score=68.02 Aligned_cols=104 Identities=25% Similarity=0.440 Sum_probs=55.0
Q ss_pred CCEEECcCCcCcCCCCcc---ccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 101 LQYLDLSNNKFIGPIPGR---ITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
+..++++.+++-. ++.. +.....|+..++++|.+.. .|+.|. ..+.++.+++++|.+ ..+|..+..++.|+.+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhc
Confidence 3455666665541 2222 2334445556677776664 444443 334666666766666 3344456666666666
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT 213 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~ 213 (261)
+++.|.+. ..|..+..+ .++..|+..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L-----~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPL-----IKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHH-----HhHHHhcCCCCccc
Confidence 66666664 223333332 23355555555554
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.8e-05 Score=60.69 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=54.9
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCC-CccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGF-PGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n 157 (261)
.+||++|.+.. .+.|..++.|.+|.++.|+|+.+.|.--.-+++|+.|.+.+|++.... -..+..+++|++|.+-+|
T Consensus 46 ~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 46 AIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred eecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence 56666666653 223445566666667777666555544445566666666666654211 122345566666666666
Q ss_pred ccccccc---hhccCCCCCCEEecccC
Q 042660 158 KLWGDIG---GIMSELKNVEFVDLSFN 181 (261)
Q Consensus 158 ~l~~~~~---~~~~~l~~L~~L~l~~n 181 (261)
.....-- -.+..+|+|++||+..-
T Consensus 124 pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 124 PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhcccCceeEEEEecCcceEeehhhh
Confidence 6533211 12345566666665543
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=8.7e-06 Score=47.06 Aligned_cols=34 Identities=38% Similarity=0.583 Sum_probs=12.3
Q ss_pred CCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 125 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
|++|++++|.++. +|..++++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITD-LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCC
Confidence 3344444444432 233333444444444444433
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.98 E-value=4.8e-06 Score=78.60 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=78.5
Q ss_pred CCCCEEECcCCc--CcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 99 SSLQYLDLSNNK--FIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 99 ~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
+.|+.|-+..|. +.......|..++.|++||+++|.--+.+|..++.+.+|++|++++..+ ..+|..++++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhhee
Confidence 368888888876 5545555577888888888888776567888888888888888888888 4778888888888888
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~ 211 (261)
++..+.....+|.....+ ++|++|.+-...
T Consensus 624 nl~~~~~l~~~~~i~~~L-----~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLEL-----QSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhc-----ccccEEEeeccc
Confidence 888776554444433334 355777776554
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=4.1e-06 Score=67.03 Aligned_cols=163 Identities=26% Similarity=0.251 Sum_probs=96.2
Q ss_pred cccCCCCCCEEECcCCcCcCCCCcc----ccCCCCCCEEEccCCcCcCCCCccc-------------cCCCCCCEEEccc
Q 042660 94 ALGSISSLQYLDLSNNKFIGPIPGR----ITDLWGLNYLNLSMNGFKGGFPGNL-------------RNLQQLKVLDLRK 156 (261)
Q Consensus 94 ~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~l~~ 156 (261)
++.++++++..+++.|.+....|.. +..-..|.+|.+++|.+...-...+ ..-|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4557788888888888887655544 3556678888888887753222112 2346788888888
Q ss_pred Cccccc----cchhccCCCCCCEEecccCcccccCCccccccccC---CCCCccEEEcccCccCccC----c-cCCCCCC
Q 042660 157 NKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI---ANTNLEVLDLGDNGITGEL----P-SFGMLPN 224 (261)
Q Consensus 157 n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l---~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~ 224 (261)
|++..- ....+..-..|+.+.+..|.|. |..+..+... ..++|+.|||.+|-++... . .+..++.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 777221 1122233357777778777775 2222222111 1356788888888776421 1 4556667
Q ss_pred CCEEEcccCcCcccCcHHHHhCC-----CCccEEEccCcc
Q 042660 225 LKVLRLGSNQLFGMIPEELLESV-----IPIQELDLSGNG 259 (261)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~-----~~L~~L~L~~N~ 259 (261)
|+.|.+..|.++.....+++... ++|..|-..+|.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 77787777777655444444322 355555555543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=3.2e-07 Score=65.90 Aligned_cols=102 Identities=26% Similarity=0.308 Sum_probs=71.2
Q ss_pred EEEcCCCCccccCccc---ccCCCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 79 NLSLSGNNFTGRIVPA---LGSISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
.++|+++++. .+++. +....+|+..++++|.+.. .|+.| ..++.++++++++|.++. +|..+..++.|+.+++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 4666666665 23333 3445567777888888874 44444 455678888888888884 7777888888888888
Q ss_pred ccCccccccchhccCCCCCCEEecccCccc
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFH 184 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (261)
+.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 888884 34555555788888888877764
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00025 Score=61.00 Aligned_cols=133 Identities=15% Similarity=0.224 Sum_probs=73.5
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcCCCCccccCCCCCCEEEcc
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...|++++|.++. +|. + -.+|+.|.++++.--..+|..+. .+|++|++++| .+. .+|. +|+.|++.
T Consensus 54 l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~ 120 (426)
T PRK15386 54 SGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIK 120 (426)
T ss_pred CCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeC
Confidence 3478888887773 341 1 23588888876443335555442 47888888887 444 3443 36666666
Q ss_pred cCccccccchhccCC-CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660 156 KNKLWGDIGGIMSEL-KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 234 (261)
.+.... +..+ ++|+.|.+.+++.. .+ ......-+.+|+.|++++|.....++.+ ..+|+.|.++.+.
T Consensus 121 ~n~~~~-----L~~LPssLk~L~I~~~n~~--~~---~~lp~~LPsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 121 GSATDS-----IKNVPNGLTSLSINSYNPE--NQ---ARIDNLISPSLKTLSLTGCSNIILPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred CCCCcc-----cccCcchHhheeccccccc--cc---cccccccCCcccEEEecCCCcccCcccc--cccCcEEEecccc
Confidence 554421 1222 24566666432210 00 0001111357899999988866332233 2578889887763
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=1.2e-06 Score=70.84 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=77.6
Q ss_pred CCEEECcCCcCcC-CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc-cccc-cchhccCCCCCCEEe
Q 042660 101 LQYLDLSNNKFIG-PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK-LWGD-IGGIMSELKNVEFVD 177 (261)
Q Consensus 101 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~ 177 (261)
+++||++...|+. .....+..+.+|+.|.+.++++...+...+.+-..|+.++++.+. ++.. ..-.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5566666555542 122223445566666666666665555555555666666666542 2111 112244566666666
Q ss_pred cccCcccccCCc-ccccc----ccC-------------------CCCCccEEEcccCc-cCccCc-cCCCCCCCCEEEcc
Q 042660 178 LSFNRFHGGLGV-GADNV----SSI-------------------ANTNLEVLDLGDNG-ITGELP-SFGMLPNLKVLRLG 231 (261)
Q Consensus 178 l~~n~l~~~~p~-~~~~~----~~l-------------------~~~~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~L~L~ 231 (261)
++++.+...... .+... ..+ ..++|.+|||++|- ++.... .+..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 666655421100 00000 000 14567777777643 332222 56667777777777
Q ss_pred cCcCcccCcHHHH--hCCCCccEEEccC
Q 042660 232 SNQLFGMIPEELL--ESVIPIQELDLSG 257 (261)
Q Consensus 232 ~n~l~~~~~~~~~--~~~~~L~~L~L~~ 257 (261)
.|.. .+|..+. ...++|.+||.-+
T Consensus 347 RCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 347 RCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhcC--CChHHeeeeccCcceEEEEecc
Confidence 7654 2444332 2334677776654
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.1e-06 Score=71.10 Aligned_cols=105 Identities=23% Similarity=0.234 Sum_probs=70.9
Q ss_pred CCeEEEEcCCCCccccCcccccCC--CCCCEEECcCCcCcCC-CCccccC-CCCCCEEEccCCcCcCC-CCccccCCCCC
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSI--SSLQYLDLSNNKFIGP-IPGRITD-LWGLNYLNLSMNGFKGG-FPGNLRNLQQL 149 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~l~~n~l~~~-~p~~~~~l~~L 149 (261)
...+.+|+.+-+|. |..+..+ ..+..+.+....+... +.+.+.- -..||++||++..++.. .-.-++.+.+|
T Consensus 136 ~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL 212 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL 212 (419)
T ss_pred cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence 34557888887776 3333333 2344455553333221 2222222 23599999999998732 23345678899
Q ss_pred CEEEcccCccccccchhccCCCCCCEEecccCc
Q 042660 150 KVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNR 182 (261)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 182 (261)
+.|.+.++++.+.+...+++..+|+.++++++.
T Consensus 213 k~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 213 KNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhccccccccCcHHHHHHhccccceeecccccc
Confidence 999999999999999999999999999998863
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.61 E-value=3e-05 Score=61.66 Aligned_cols=84 Identities=27% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC--cCcCCCCccccCCCCCCEEEcccCccccc-cchhccCCCCCC
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN--GFKGGFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNVE 174 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 174 (261)
+..++.+.+.+..++.. ..|..+++|+.|.++.| ++.+.++.....+++|+++++++|++... --..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 33444444444443311 12345556666666666 44443443334446666666666655321 111123344455
Q ss_pred EEecccCcc
Q 042660 175 FVDLSFNRF 183 (261)
Q Consensus 175 ~L~l~~n~l 183 (261)
.|++.+|..
T Consensus 120 ~Ldl~n~~~ 128 (260)
T KOG2739|consen 120 SLDLFNCSV 128 (260)
T ss_pred hhhcccCCc
Confidence 555555444
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=4.1e-05 Score=70.62 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=28.1
Q ss_pred CCCEEEccCCcC-cCCCCcccc-CCCCCCEEEcccCccc-cccchhccCCCCCCEEecccCccc
Q 042660 124 GLNYLNLSMNGF-KGGFPGNLR-NLQQLKVLDLRKNKLW-GDIGGIMSELKNVEFVDLSFNRFH 184 (261)
Q Consensus 124 ~L~~L~l~~n~l-~~~~p~~~~-~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 184 (261)
+|++|++++... ...-|..++ .+|+|+.|.+.+-.+. +.+...+.++++|..||+++.+++
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 455555555332 111222222 2455555555554432 223344455556666666555554
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=1.6e-05 Score=64.58 Aligned_cols=160 Identities=21% Similarity=0.137 Sum_probs=96.5
Q ss_pred CCCCCCEEECcCCcCcC--CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccc-cchhccCCCCC
Q 042660 97 SISSLQYLDLSNNKFIG--PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNV 173 (261)
Q Consensus 97 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 173 (261)
...+++.+|+.+|.|+. .+...+.++|.|++|+++.|.+...+...-....+|+++.|.+..+... ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35789999999999973 2333457899999999999998754333223567889999988877543 33445677888
Q ss_pred CEEecccCcccccC--CccccccccCCCCCccEEEcccCccCcc--Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCC
Q 042660 174 EFVDLSFNRFHGGL--GVGADNVSSIANTNLEVLDLGDNGITGE--LP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVI 248 (261)
Q Consensus 174 ~~L~l~~n~l~~~~--p~~~~~~~~l~~~~L~~L~Ls~n~l~~~--~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 248 (261)
+.++++.|.+.-.. ....... .+.+++++...|....- .. .-..++++..+-+..|.+.......-++..+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~----s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDW----STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred hhhhhccchhhhhcccccccccc----chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 88888888553111 1111111 12234444444432210 00 1123556677777778776444444444555
Q ss_pred CccEEEccCccC
Q 042660 249 PIQELDLSGNGF 260 (261)
Q Consensus 249 ~L~~L~L~~N~l 260 (261)
.+..|.|+.|.|
T Consensus 225 ~~~~LnL~~~~i 236 (418)
T KOG2982|consen 225 SLSCLNLGANNI 236 (418)
T ss_pred cchhhhhccccc
Confidence 666777776654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=6.5e-05 Score=69.32 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=13.4
Q ss_pred CCCCCEEEcccCcCcccCcHHHHh
Q 042660 222 LPNLKVLRLGSNQLFGMIPEELLE 245 (261)
Q Consensus 222 ~~~L~~L~L~~n~l~~~~~~~~~~ 245 (261)
+|+|+.||.+++.+++.+-+.+..
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHH
Confidence 556666666666655544444443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.0014 Score=47.18 Aligned_cols=83 Identities=16% Similarity=0.154 Sum_probs=33.6
Q ss_pred cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCC
Q 042660 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNV 173 (261)
Q Consensus 94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 173 (261)
+|.+..+|+.+.+.. .+..+....|.+..+|+.+.+..+ +.......|..+.+++.+.+.+ .+.......|..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455566666553 344444455555555666665553 4433344455555555555543 3322333344444555
Q ss_pred CEEecc
Q 042660 174 EFVDLS 179 (261)
Q Consensus 174 ~~L~l~ 179 (261)
+.+++.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 554443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0022 Score=55.27 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=24.0
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
+..++.|++++|.+. .+|. + -.+|++|.++++.--..+|+.+. .+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 345555565555544 2231 1 12355555554322123343331 34555555555
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00024 Score=56.66 Aligned_cols=109 Identities=28% Similarity=0.304 Sum_probs=68.2
Q ss_pred CccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC--cccccCCccccccccCCCCCccEEEcccCccCc--c
Q 042660 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN--RFHGGLGVGADNVSSIANTNLEVLDLGDNGITG--E 215 (261)
Q Consensus 140 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~--~ 215 (261)
.........|+.+++.+..++.. ..+..+++|+.|.++.| .+.+.++...... ++|+++++++|++.. .
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-----P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-----PNLKVLNLSGNKIKDLST 108 (260)
T ss_pred ccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhC-----CceeEEeecCCccccccc
Confidence 33334455666666666555332 22456788999999999 4444333322222 577999999999874 2
Q ss_pred CccCCCCCCCCEEEcccCcCcc--cCcHHHHhCCCCccEEEc
Q 042660 216 LPSFGMLPNLKVLRLGSNQLFG--MIPEELLESVIPIQELDL 255 (261)
Q Consensus 216 ~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~L 255 (261)
++.+..+.+|..|++.+|..+. .....+|.-+++|+.||-
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 2245667778888998887663 223446666667777654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.0024 Score=45.89 Aligned_cols=123 Identities=21% Similarity=0.192 Sum_probs=65.0
Q ss_pred CccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccc
Q 042660 116 PGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS 195 (261)
Q Consensus 116 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 195 (261)
...|.+..+|+.+.+.. .+.......|..+.+|+.+.+..+ +.......|..+++++.+.+.. .+.......+...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~- 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC- 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT--
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc-
Confidence 45677888999999875 566556677888889999999875 6666667788888899999965 3321222223323
Q ss_pred cCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCc
Q 042660 196 SIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPI 250 (261)
Q Consensus 196 ~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L 250 (261)
.+++.+++..+ +..... .+... .++.+.+.. .++ .++...|....+|
T Consensus 81 ----~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 ----TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp ----TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred ----ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 46688988765 554444 66666 888888876 444 5677777665444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=1.3e-05 Score=64.47 Aligned_cols=105 Identities=22% Similarity=0.114 Sum_probs=65.4
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccc-hhccCCCCCCEE
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG-GIMSELKNVEFV 176 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 176 (261)
+.+++.|++-++.+..+. ....++.|++|.|+-|.|+..- .+..+++|++|+|..|.|..... ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445667777777776431 2356777888888888877532 35677788888888887744322 346677888888
Q ss_pred ecccCcccccCCccccccccCCCCCccEEE
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLD 206 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~ 206 (261)
.|..|.-.|..+.......-...++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888877766554433322111134556654
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00015 Score=58.50 Aligned_cols=85 Identities=20% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCC
Q 042660 122 LWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTN 201 (261)
Q Consensus 122 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~ 201 (261)
+.+.+.|+..++.++.+ ....+|+.|++|.|+-|+|+..- .+..+.+|++|+|..|.|.+. ..+.-+..+ ++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sl--dEL~YLknl--ps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESL--DELEYLKNL--PS 89 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccH--HHHHHHhcC--ch
Confidence 44556666666666532 22346677777777777775442 245566677777776666411 111112222 45
Q ss_pred ccEEEcccCccCc
Q 042660 202 LEVLDLGDNGITG 214 (261)
Q Consensus 202 L~~L~Ls~n~l~~ 214 (261)
|+.|+|..|.=.+
T Consensus 90 Lr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 90 LRTLWLDENPCCG 102 (388)
T ss_pred hhhHhhccCCccc
Confidence 5666666655443
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.29 E-value=1.7e-05 Score=69.99 Aligned_cols=184 Identities=27% Similarity=0.288 Sum_probs=117.0
Q ss_pred eEEEEcCCCCccccC----cccccCCCCCCEEECcCCcCcCCCCc----cccCC-CCCCEEEccCCcCcCC----CCccc
Q 042660 77 SVNLSLSGNNFTGRI----VPALGSISSLQYLDLSNNKFIGPIPG----RITDL-WGLNYLNLSMNGFKGG----FPGNL 143 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~l~~~----~p~~~ 143 (261)
...+.+.+|.+.... ...+...+.|+.|++++|.+.+.-.. .+... ..+++|++..+.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 346788888887653 33456778899999999998743222 22222 5677788888887753 34555
Q ss_pred cCCCCCCEEEcccCcccc----ccchhcc----CCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660 144 RNLQQLKVLDLRKNKLWG----DIGGIMS----ELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE 215 (261)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 215 (261)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++...-..+...-......+..++++.|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 567788999999998732 1233333 47789999999988863211111111111112256688888888742
Q ss_pred -----CccCCCC-CCCCEEEcccCcCcccCcHHHHh---CCCCccEEEccCccC
Q 042660 216 -----LPSFGML-PNLKVLRLGSNQLFGMIPEELLE---SVIPIQELDLSGNGF 260 (261)
Q Consensus 216 -----~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~---~~~~L~~L~L~~N~l 260 (261)
.|.+... ..++.++++.|.|++.-...+.. ....++.+.+++|++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2344555 67889999999988655544433 223778888888875
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.61 E-value=0.0052 Score=29.55 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=4.4
Q ss_pred CEEEccCCcCc
Q 042660 126 NYLNLSMNGFK 136 (261)
Q Consensus 126 ~~L~l~~n~l~ 136 (261)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.28 E-value=0.01 Score=28.46 Aligned_cols=12 Identities=50% Similarity=0.573 Sum_probs=6.3
Q ss_pred CCEEEcccCccc
Q 042660 149 LKVLDLRKNKLW 160 (261)
Q Consensus 149 L~~L~l~~n~l~ 160 (261)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555554
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.18 E-value=0.051 Score=27.09 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=15.8
Q ss_pred CCCCEEEcccCcCcccCcHHHHh
Q 042660 223 PNLKVLRLGSNQLFGMIPEELLE 245 (261)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~~~~ 245 (261)
++|+.|+|++|.|+ .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777888888877 67776654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.18 E-value=0.051 Score=27.09 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=15.8
Q ss_pred CCCCEEEcccCcCcccCcHHHHh
Q 042660 223 PNLKVLRLGSNQLFGMIPEELLE 245 (261)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~~~~ 245 (261)
++|+.|+|++|.|+ .+|...|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHcc
Confidence 46777888888877 67776654
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.05 E-value=0.061 Score=23.94 Aligned_cols=12 Identities=50% Similarity=0.772 Sum_probs=4.6
Q ss_pred ccEEEcccCccC
Q 042660 202 LEVLDLGDNGIT 213 (261)
Q Consensus 202 L~~L~Ls~n~l~ 213 (261)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 455555555544
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.89 E-value=0.001 Score=58.94 Aligned_cols=160 Identities=27% Similarity=0.280 Sum_probs=105.8
Q ss_pred CCEEECcCCcCcCCCC----ccccCCCCCCEEEccCCcCcCCCC----ccccCC-CCCCEEEcccCccccc----cchhc
Q 042660 101 LQYLDLSNNKFIGPIP----GRITDLWGLNYLNLSMNGFKGGFP----GNLRNL-QQLKVLDLRKNKLWGD----IGGIM 167 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l-~~L~~L~l~~n~l~~~----~~~~~ 167 (261)
+..+.+.+|.+..... ..+...+.|+.|+++.|.+..... ..+... ..+++|++..|.++.. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7788889998875433 345778899999999999874221 222232 5677788888887654 44556
Q ss_pred cCCCCCCEEecccCccccc----CCccccccccCCCCCccEEEcccCccCccCc-----cCCCCCC-CCEEEcccCcCcc
Q 042660 168 SELKNVEFVDLSFNRFHGG----LGVGADNVSSIANTNLEVLDLGDNGITGELP-----SFGMLPN-LKVLRLGSNQLFG 237 (261)
Q Consensus 168 ~~l~~L~~L~l~~n~l~~~----~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-----~~~~~~~-L~~L~L~~n~l~~ 237 (261)
.....++.++++.|.+... ++..+.. ......++++|.++++.++.... .+...+. +..+++..|.+.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~-~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALES-AASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhh-hhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 6678899999999988411 1111111 00123578999999999874221 3444555 7779999999985
Q ss_pred cCcHHHHhCCC----CccEEEccCccCC
Q 042660 238 MIPEELLESVI----PIQELDLSGNGFT 261 (261)
Q Consensus 238 ~~~~~~~~~~~----~L~~L~L~~N~ls 261 (261)
.....+...+. .+++++++.|.|+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~ 275 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSIT 275 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCcc
Confidence 54444433333 5689999999874
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.69 E-value=0.08 Score=46.91 Aligned_cols=37 Identities=35% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCCCEEEcccCc-CcccCcHHHHhCCCCccEEEccCc
Q 042660 222 LPNLKVLRLGSNQ-LFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 222 ~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
++.|+.|.+.++. +++..-..+....+.|++|+++++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 4455555544444 343333344444444555555544
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.63 E-value=0.25 Score=24.50 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=6.1
Q ss_pred CCCEEEccCCcCc
Q 042660 124 GLNYLNLSMNGFK 136 (261)
Q Consensus 124 ~L~~L~l~~n~l~ 136 (261)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.63 E-value=0.25 Score=24.50 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=6.1
Q ss_pred CCCEEEccCCcCc
Q 042660 124 GLNYLNLSMNGFK 136 (261)
Q Consensus 124 ~L~~L~l~~n~l~ 136 (261)
+|++|++++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.97 E-value=0.0048 Score=48.75 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=52.9
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (261)
.+.||++.|++.. ...-+.-++.+..|+++.|++. ..|..+..+..+..+++..|..+ ..|.+++..++++++++-+
T Consensus 44 ~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence 3456777766552 3333444556666777777766 56666666666777777666666 4677777777777777777
Q ss_pred Ccccc
Q 042660 157 NKLWG 161 (261)
Q Consensus 157 n~l~~ 161 (261)
|.+..
T Consensus 121 ~~~~~ 125 (326)
T KOG0473|consen 121 TEFFR 125 (326)
T ss_pred CcchH
Confidence 66533
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.84 E-value=0.0054 Score=48.50 Aligned_cols=90 Identities=20% Similarity=0.196 Sum_probs=73.1
Q ss_pred cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCC
Q 042660 92 VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELK 171 (261)
Q Consensus 92 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 171 (261)
-..+..+...+.||++.|++. ..-..|.-+..+..|+++.|.+.. .|..++....++.+++.+|.. ...|.++...+
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~-~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKF-LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhh-ChhhHHHHHHHHHHHhhccch-hhCCccccccC
Confidence 345677788999999999987 334456667778889999999884 788888888888888888877 66788899999
Q ss_pred CCCEEecccCccc
Q 042660 172 NVEFVDLSFNRFH 184 (261)
Q Consensus 172 ~L~~L~l~~n~l~ 184 (261)
.++.+++-.|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 9999999988875
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.16 E-value=0.2 Score=24.30 Aligned_cols=15 Identities=47% Similarity=0.729 Sum_probs=7.2
Q ss_pred CCCCEEEcccCcCcc
Q 042660 223 PNLKVLRLGSNQLFG 237 (261)
Q Consensus 223 ~~L~~L~L~~n~l~~ 237 (261)
++|+.|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345566666665554
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.15 E-value=1.6 Score=21.80 Aligned_cols=12 Identities=50% Similarity=0.689 Sum_probs=6.0
Q ss_pred CccEEEccCccC
Q 042660 249 PIQELDLSGNGF 260 (261)
Q Consensus 249 ~L~~L~L~~N~l 260 (261)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 345555555544
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.39 E-value=1.1 Score=22.73 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=7.3
Q ss_pred CCCEEEcccCcCc
Q 042660 224 NLKVLRLGSNQLF 236 (261)
Q Consensus 224 ~L~~L~L~~n~l~ 236 (261)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 83
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.26 E-value=3.5 Score=28.03 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=9.1
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 042660 1 MTLHHFSVAFFFFSLHLLFV 20 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (261)
|..+.++++.+++.++|++.
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 77444444444444444333
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.06 E-value=0.35 Score=37.63 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=13.3
Q ss_pred CCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 125 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
++.++-++..|..+.-+.+..+++++.|.+.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 334444444443333333334444444444433
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.73 E-value=2.6 Score=21.04 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=9.5
Q ss_pred CCCEEEcccCcCcccCc
Q 042660 224 NLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 224 ~L~~L~L~~n~l~~~~~ 240 (261)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4566666666665 444
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.92 E-value=0.62 Score=36.25 Aligned_cols=86 Identities=16% Similarity=0.185 Sum_probs=58.6
Q ss_pred CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccC-ccCccCc-cCCCC
Q 042660 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN-GITGELP-SFGML 222 (261)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~-~~~~~ 222 (261)
.-..++.++-++..|..+.-+.+..++.++.|.+.++.--+.. .+..+.. ..++|+.|++++| +|+..-- .+..+
T Consensus 99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~l 175 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKL 175 (221)
T ss_pred CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HHHHhcc-cccchheeeccCCCeechhHHHHHHHh
Confidence 3346889999999998888888889999999998887543211 1112222 2367899999976 4553222 56777
Q ss_pred CCCCEEEcccC
Q 042660 223 PNLKVLRLGSN 233 (261)
Q Consensus 223 ~~L~~L~L~~n 233 (261)
++|+.|.+.+=
T Consensus 176 knLr~L~l~~l 186 (221)
T KOG3864|consen 176 KNLRRLHLYDL 186 (221)
T ss_pred hhhHHHHhcCc
Confidence 78887777653
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.54 E-value=2.4 Score=38.03 Aligned_cols=13 Identities=38% Similarity=0.353 Sum_probs=7.1
Q ss_pred CccEEEcccCccC
Q 042660 201 NLEVLDLGDNGIT 213 (261)
Q Consensus 201 ~L~~L~Ls~n~l~ 213 (261)
.|++|.+.||.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 4555555555554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.67 E-value=2.9 Score=37.54 Aligned_cols=64 Identities=30% Similarity=0.343 Sum_probs=39.7
Q ss_pred CCCCCCEEecccCcccccCCccccccccCC--CCCccEEEcccC--ccCccCccCCC--CCCCCEEEcccCcCccc
Q 042660 169 ELKNVEFVDLSFNRFHGGLGVGADNVSSIA--NTNLEVLDLGDN--GITGELPSFGM--LPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 169 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~--~~~L~~L~Ls~n--~l~~~~~~~~~--~~~L~~L~L~~n~l~~~ 238 (261)
+.+.+..++|++|++.. +..++.+. .++|+.|+|++| .+... +++.+ ...|++|-+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~-----Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-----LDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhc-----hhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccc
Confidence 45677888888888862 22222221 467889999988 44322 22222 33588888888887643
No 89
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=69.13 E-value=2.7 Score=37.13 Aligned_cols=88 Identities=24% Similarity=0.103 Sum_probs=41.6
Q ss_pred cCCCCCCEEECcCC-cCcCCCC----ccccCCCCCCEEEccCCc-CcCCCCcccc-CCCCCCEEEcccCc-ccccc-chh
Q 042660 96 GSISSLQYLDLSNN-KFIGPIP----GRITDLWGLNYLNLSMNG-FKGGFPGNLR-NLQQLKVLDLRKNK-LWGDI-GGI 166 (261)
Q Consensus 96 ~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~l~~n~-l~~~~-~~~ 166 (261)
...+.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..+. .+++|+.|.+.++. ++... ...
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 34566666666652 1111111 112334566666666665 4332222222 25566666655554 33322 222
Q ss_pred ccCCCCCCEEecccCcc
Q 042660 167 MSELKNVEFVDLSFNRF 183 (261)
Q Consensus 167 ~~~l~~L~~L~l~~n~l 183 (261)
...++.|++|+++++..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 34456677777765544
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=66.46 E-value=2.1 Score=37.10 Aligned_cols=136 Identities=24% Similarity=0.221 Sum_probs=71.8
Q ss_pred CCCCCCEEECcCCcCcC-CCCccc-cCCCCCCEEEccCCc-CcCCCCccc-cCCCCCCEEEcccCcccc--ccchhccCC
Q 042660 97 SISSLQYLDLSNNKFIG-PIPGRI-TDLWGLNYLNLSMNG-FKGGFPGNL-RNLQQLKVLDLRKNKLWG--DIGGIMSEL 170 (261)
Q Consensus 97 ~l~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~-l~~~~p~~~-~~l~~L~~L~l~~n~l~~--~~~~~~~~l 170 (261)
.+..|++++.+++.-.+ ..-.++ .+.++|+.+.+..++ ++..--..+ .+.+.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34566777766554321 111122 345677777777665 222111111 355677777777665422 122333456
Q ss_pred CCCCEEecccCcccccCCcccccccc--CCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCc
Q 042660 171 KNVEFVDLSFNRFHGGLGVGADNVSS--IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 171 ~~L~~L~l~~n~l~~~~p~~~~~~~~--l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~ 234 (261)
+.|+.+.++.+...... .+..+.. -....|+.+.|+++......- .+..+++|+.+++..++
T Consensus 372 ~~lr~lslshce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 77888888877653211 1111111 112456777777777654322 45667778887777664
No 91
>PRK14758 hypothetical protein; Provisional
Probab=37.89 E-value=55 Score=16.21 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=10.2
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 042660 1 MTLHHFSVAFFFFSLHLLFV 20 (261)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (261)
|+++-.+...+.++++..++
T Consensus 1 Mv~RYrFEliLivlIlCali 20 (27)
T PRK14758 1 MVGRYRFEFILIILILCALI 20 (27)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 66665555544444444443
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.87 E-value=24 Score=17.09 Aligned_cols=12 Identities=33% Similarity=0.196 Sum_probs=6.5
Q ss_pred CCCCEEecccCc
Q 042660 171 KNVEFVDLSFNR 182 (261)
Q Consensus 171 ~~L~~L~l~~n~ 182 (261)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455555555553
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.22 E-value=25 Score=38.22 Aligned_cols=34 Identities=29% Similarity=0.223 Sum_probs=28.0
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEcccCccccc
Q 042660 129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD 162 (261)
Q Consensus 129 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 162 (261)
||++|+|+...+..|..+++|+.|+|++|.+.-.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 5788999877777788889999999999988544
No 94
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=34.24 E-value=39 Score=29.74 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCccEEEcccCccCccC-----c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 200 TNLEVLDLGDNGITGEL-----P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~-----~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
+.|+++.++.+...... . .-.....|..+.|+++..+.....+.....++|+.+++.++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 45666766655433221 1 12334566677777765543333333344456777766554
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.54 E-value=36 Score=37.13 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.9
Q ss_pred EcCCCCccccCcccccCCCCCCEEECcCCcCc
Q 042660 81 SLSGNNFTGRIVPALGSISSLQYLDLSNNKFI 112 (261)
Q Consensus 81 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 112 (261)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888777777888888888888888775
No 96
>PF15240 Pro-rich: Proline-rich
Probab=26.56 E-value=38 Score=25.89 Aligned_cols=20 Identities=5% Similarity=0.137 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCChhHHH
Q 042660 11 FFFSLHLLFVVVLGSESELG 30 (261)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (261)
+|.+++|+|.+|...+.|+.
T Consensus 5 LLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 5 LLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred HHHHHHHHhhhccccccccc
Confidence 33344444446665555543
No 97
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=24.69 E-value=4.7 Score=16.47 Aligned_cols=9 Identities=56% Similarity=1.483 Sum_probs=4.2
Q ss_pred CCCCcceEE
Q 042660 62 CPVSWTGVS 70 (261)
Q Consensus 62 c~~~~~gv~ 70 (261)
|+..|.|..
T Consensus 4 C~~G~~G~~ 12 (13)
T PF12661_consen 4 CPPGWTGPN 12 (13)
T ss_dssp E-TTEETTT
T ss_pred CcCCCcCCC
Confidence 444566543
Done!