Query 042660
Match_columns 261
No_of_seqs 264 out of 3267
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:27:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.6E-34 9E-39 240.0 17.1 229 23-260 2-256 (313)
2 4eco_A Uncharacterized protein 100.0 8E-31 2.7E-35 238.4 10.3 225 26-260 29-365 (636)
3 3rgz_A Protein brassinosteroid 100.0 2.7E-29 9.3E-34 232.9 18.8 222 21-260 6-259 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 4.8E-30 1.6E-34 238.7 13.0 227 25-261 267-608 (876)
5 4fcg_A Uncharacterized protein 100.0 1.1E-29 3.8E-34 213.3 12.0 230 23-260 23-289 (328)
6 2o6q_A Variable lymphocyte rec 99.9 8E-26 2.8E-30 184.7 20.0 197 59-261 11-218 (270)
7 3m19_A Variable lymphocyte rec 99.9 4.3E-26 1.5E-30 184.4 16.9 186 65-261 6-192 (251)
8 1ozn_A Reticulon 4 receptor; N 99.9 2.4E-25 8.3E-30 183.2 19.4 182 78-260 35-237 (285)
9 3zyj_A Leucine-rich repeat-con 99.9 2.1E-25 7.1E-30 194.5 18.5 123 58-180 37-169 (440)
10 2o6q_A Variable lymphocyte rec 99.9 3.5E-25 1.2E-29 180.9 17.3 189 64-261 5-194 (270)
11 3zyi_A Leucine-rich repeat-con 99.9 5.9E-25 2E-29 192.2 18.4 202 58-260 48-278 (452)
12 2z66_A Variable lymphocyte rec 99.9 6.4E-25 2.2E-29 182.4 17.0 193 62-260 5-235 (306)
13 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-25 4.8E-30 187.2 12.7 183 77-261 78-281 (313)
14 3rgz_A Protein brassinosteroid 99.9 7.5E-25 2.6E-29 203.2 17.7 181 79-260 446-692 (768)
15 2z80_A TOLL-like receptor 2, v 99.9 9.6E-25 3.3E-29 185.0 12.9 180 76-261 53-235 (353)
16 2id5_A Lingo-1, leucine rich r 99.9 3.7E-24 1.3E-28 188.3 16.1 196 57-258 4-210 (477)
17 1xku_A Decorin; proteoglycan, 99.9 2.1E-23 7.1E-28 175.1 19.4 196 61-260 28-252 (330)
18 2xwt_C Thyrotropin receptor; s 99.9 4.4E-24 1.5E-28 171.3 12.6 177 76-261 32-218 (239)
19 2ft3_A Biglycan; proteoglycan, 99.9 2.4E-23 8.3E-28 174.9 17.4 194 62-260 31-253 (332)
20 2z81_A CD282 antigen, TOLL-lik 99.9 5.4E-24 1.9E-28 190.2 13.9 180 76-261 27-209 (549)
21 3m19_A Variable lymphocyte rec 99.9 6.9E-23 2.4E-27 165.5 17.8 169 65-238 15-194 (251)
22 2z62_A TOLL-like receptor 4, v 99.9 3.1E-23 1.1E-27 169.7 16.0 180 79-261 56-237 (276)
23 2o6s_A Variable lymphocyte rec 99.9 1.5E-23 5.1E-28 164.6 12.8 171 62-243 5-185 (208)
24 1p9a_G Platelet glycoprotein I 99.9 7.6E-23 2.6E-27 168.8 17.6 177 75-261 31-208 (290)
25 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.9E-27 165.1 19.0 175 76-260 42-217 (272)
26 2z62_A TOLL-like receptor 4, v 99.9 2.1E-23 7E-28 170.8 13.1 179 76-261 29-213 (276)
27 2z66_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 171.9 14.2 179 76-261 79-261 (306)
28 3v47_A TOLL-like receptor 5B a 99.9 8.9E-23 3.1E-27 178.2 16.1 127 62-188 8-146 (455)
29 3v47_A TOLL-like receptor 5B a 99.9 1.6E-22 5.5E-27 176.6 16.8 131 125-261 277-408 (455)
30 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 165.0 17.3 175 75-261 10-185 (290)
31 3o6n_A APL1; leucine-rich repe 99.9 2.6E-22 8.8E-27 172.2 17.1 107 79-185 73-179 (390)
32 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.4E-27 169.7 14.8 175 77-260 129-313 (328)
33 1ozn_A Reticulon 4 receptor; N 99.9 6.2E-22 2.1E-26 162.8 17.8 174 78-260 14-189 (285)
34 2xot_A Amphoterin-induced prot 99.9 2.6E-22 8.9E-27 170.6 15.4 173 79-260 22-201 (361)
35 2z80_A TOLL-like receptor 2, v 99.9 7.9E-23 2.7E-27 173.1 12.1 186 75-261 76-314 (353)
36 1wwl_A Monocyte differentiatio 99.9 4.3E-23 1.5E-27 172.0 10.1 107 77-184 97-214 (312)
37 3oja_B Anopheles plasmodium-re 99.9 7.1E-22 2.4E-26 178.4 17.9 108 79-186 79-186 (597)
38 3e6j_A Variable lymphocyte rec 99.9 1.7E-21 5.7E-26 155.3 17.7 159 62-240 17-176 (229)
39 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-22 5.7E-27 182.6 13.3 178 76-260 33-216 (606)
40 3rfs_A Internalin B, repeat mo 99.9 5.1E-22 1.8E-26 162.3 14.9 159 75-240 63-222 (272)
41 3zyj_A Leucine-rich repeat-con 99.9 9E-22 3.1E-26 171.5 17.0 179 76-260 89-291 (440)
42 2v9t_B SLIT homolog 2 protein 99.9 1.6E-21 5.4E-26 154.5 16.8 160 62-240 9-169 (220)
43 2id5_A Lingo-1, leucine rich r 99.9 1.1E-21 3.6E-26 172.6 17.2 110 76-185 57-166 (477)
44 3zyi_A Leucine-rich repeat-con 99.9 9.2E-22 3.2E-26 172.0 16.3 177 76-260 100-302 (452)
45 2v70_A SLIT-2, SLIT homolog 2 99.9 1.6E-21 5.6E-26 154.4 16.2 157 79-243 15-173 (220)
46 3t6q_A CD180 antigen; protein- 99.9 5.9E-22 2E-26 179.1 15.3 166 66-236 14-192 (606)
47 4eco_A Uncharacterized protein 99.9 4.4E-22 1.5E-26 181.0 13.0 184 75-261 206-470 (636)
48 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.8E-26 177.2 15.5 175 79-261 380-558 (606)
49 1wwl_A Monocyte differentiatio 99.9 2.8E-22 9.5E-27 167.1 10.7 176 75-261 121-309 (312)
50 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-21 6.6E-26 177.9 16.5 175 62-241 2-189 (680)
51 3o6n_A APL1; leucine-rich repe 99.9 6.3E-21 2.2E-25 163.5 18.2 178 76-260 94-330 (390)
52 3oja_B Anopheles plasmodium-re 99.9 6.2E-21 2.1E-25 172.2 18.2 178 76-260 100-336 (597)
53 3t6q_A CD180 antigen; protein- 99.9 2.2E-21 7.4E-26 175.3 15.0 175 79-260 354-559 (606)
54 2z7x_B TOLL-like receptor 1, v 99.9 2E-21 7E-26 172.5 13.8 158 96-261 321-481 (520)
55 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-20 4.2E-25 172.6 18.7 183 77-260 383-596 (680)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.6E-21 1.6E-25 171.9 15.3 158 96-261 350-510 (562)
57 4g8a_A TOLL-like receptor 4; l 99.9 2.4E-21 8.3E-26 175.3 13.5 177 76-259 53-235 (635)
58 2z63_A TOLL-like receptor 4, v 99.9 3.7E-21 1.3E-25 172.4 13.6 179 76-261 348-531 (570)
59 2o6s_A Variable lymphocyte rec 99.9 1.2E-20 4E-25 148.1 14.8 166 79-260 11-177 (208)
60 4glp_A Monocyte differentiatio 99.9 9.1E-22 3.1E-26 163.8 8.8 178 77-261 93-307 (310)
61 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-20 4.5E-25 158.2 15.9 176 76-261 79-277 (332)
62 1xku_A Decorin; proteoglycan, 99.9 2.6E-20 9E-25 156.1 17.7 173 79-260 125-305 (330)
63 4glp_A Monocyte differentiatio 99.9 3E-21 1E-25 160.6 11.2 152 76-237 146-308 (310)
64 2v9t_B SLIT homolog 2 protein 99.8 2.4E-20 8E-25 147.7 14.8 150 102-260 14-164 (220)
65 3oja_A Leucine-rich immune mol 99.8 5.5E-21 1.9E-25 168.5 12.3 180 77-260 36-249 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.8 3.8E-21 1.3E-25 160.6 10.5 175 76-261 59-250 (317)
67 4ecn_A Leucine-rich repeat pro 99.8 6.2E-21 2.1E-25 177.7 12.8 181 76-261 492-710 (876)
68 3j0a_A TOLL-like receptor 5; m 99.8 5.4E-21 1.9E-25 179.0 12.5 191 64-260 14-216 (844)
69 4ay9_X Follicle-stimulating ho 99.8 8.3E-21 2.8E-25 160.6 12.2 195 62-261 7-215 (350)
70 2z63_A TOLL-like receptor 4, v 99.8 1E-20 3.6E-25 169.5 12.7 177 76-259 29-211 (570)
71 2xwt_C Thyrotropin receptor; s 99.8 2.7E-20 9.1E-25 149.2 13.1 172 76-259 56-237 (239)
72 1h6u_A Internalin H; cell adhe 99.8 5.6E-20 1.9E-24 152.8 15.5 168 75-261 63-230 (308)
73 3e6j_A Variable lymphocyte rec 99.8 9.2E-20 3.1E-24 145.2 15.9 152 101-261 21-172 (229)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-19 4.8E-24 162.2 18.7 107 75-184 52-159 (562)
75 1h6u_A Internalin H; cell adhe 99.8 2.1E-19 7E-24 149.4 18.1 167 76-261 42-208 (308)
76 4g8a_A TOLL-like receptor 4; l 99.8 3.3E-20 1.1E-24 167.9 13.7 171 83-261 39-214 (635)
77 1h6t_A Internalin B; cell adhe 99.8 1.4E-19 4.7E-24 149.3 16.3 166 76-260 47-212 (291)
78 2v70_A SLIT-2, SLIT homolog 2 99.8 8.9E-20 3.1E-24 144.4 14.0 151 102-261 14-166 (220)
79 2z81_A CD282 antigen, TOLL-lik 99.8 8.7E-20 3E-24 162.9 14.8 180 62-260 2-184 (549)
80 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-19 3.7E-24 170.3 14.8 59 201-260 267-326 (844)
81 3oja_A Leucine-rich immune mol 99.8 3E-20 1E-24 163.8 10.3 151 98-256 119-270 (487)
82 2z7x_B TOLL-like receptor 1, v 99.8 2.3E-19 7.9E-24 159.3 16.1 133 120-261 321-457 (520)
83 4ezg_A Putative uncharacterize 99.8 1.2E-19 4.2E-24 141.1 11.5 150 98-260 43-193 (197)
84 1w8a_A SLIT protein; signaling 99.8 4.2E-20 1.4E-24 143.2 8.3 131 79-217 12-143 (192)
85 4fmz_A Internalin; leucine ric 99.8 4.7E-19 1.6E-23 149.4 15.0 165 79-261 181-346 (347)
86 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.9E-24 154.3 10.4 181 54-238 10-204 (361)
87 3o53_A Protein LRIM1, AGAP0063 99.8 3.3E-20 1.1E-24 154.8 6.9 168 76-261 35-204 (317)
88 3cvr_A Invasion plasmid antige 99.8 2.2E-18 7.7E-23 153.9 17.9 169 65-261 49-243 (571)
89 3goz_A Leucine-rich repeat-con 99.8 3.1E-20 1E-24 157.8 4.5 183 77-259 53-264 (362)
90 1o6v_A Internalin A; bacterial 99.8 2.1E-18 7.2E-23 151.2 16.2 163 79-260 225-387 (466)
91 4fmz_A Internalin; leucine ric 99.8 3.9E-18 1.3E-22 143.7 17.1 152 95-261 173-324 (347)
92 4ezg_A Putative uncharacterize 99.8 2.1E-18 7.2E-23 134.1 13.8 150 76-237 45-195 (197)
93 3cvr_A Invasion plasmid antige 99.8 1.7E-18 5.9E-23 154.6 14.2 133 100-260 60-192 (571)
94 1xeu_A Internalin C; cellular 99.8 7.8E-19 2.7E-23 142.7 10.3 145 76-237 42-186 (263)
95 1m9s_A Internalin B; cell inva 99.8 3.4E-18 1.2E-22 154.1 15.4 165 77-260 45-209 (605)
96 1o6v_A Internalin A; bacterial 99.8 1.1E-17 3.6E-22 146.8 17.4 149 96-261 218-366 (466)
97 2ca6_A RAN GTPase-activating p 99.8 3.2E-20 1.1E-24 159.0 1.1 182 75-261 94-316 (386)
98 3goz_A Leucine-rich repeat-con 99.8 1.3E-19 4.4E-24 154.0 3.8 186 76-261 23-238 (362)
99 1w8a_A SLIT protein; signaling 99.8 1.5E-17 5.3E-22 128.7 14.3 134 102-243 11-146 (192)
100 4b8c_D Glucose-repressible alc 99.8 2.1E-19 7.1E-24 165.4 3.4 202 25-243 130-336 (727)
101 2o6r_A Variable lymphocyte rec 99.8 2.1E-17 7.2E-22 126.2 14.0 136 62-216 5-140 (177)
102 3bz5_A Internalin-J, INLJ; leu 99.8 6.4E-17 2.2E-21 141.5 18.7 162 76-260 65-245 (457)
103 3bz5_A Internalin-J, INLJ; leu 99.7 8E-17 2.7E-21 140.8 18.5 167 75-261 42-225 (457)
104 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.7E-22 136.4 13.6 162 81-261 30-191 (291)
105 2ell_A Acidic leucine-rich nuc 99.7 8.6E-18 3E-22 127.2 10.1 135 98-240 23-163 (168)
106 2ast_B S-phase kinase-associat 99.7 7.3E-19 2.5E-23 147.5 4.0 174 79-258 97-282 (336)
107 2ast_B S-phase kinase-associat 99.7 6.2E-19 2.1E-23 147.9 3.5 178 76-259 71-258 (336)
108 2wfh_A SLIT homolog 2 protein 99.7 4.7E-17 1.6E-21 126.1 13.8 126 80-214 15-140 (193)
109 2ca6_A RAN GTPase-activating p 99.7 6.9E-19 2.4E-23 150.6 3.0 181 76-261 61-287 (386)
110 2ell_A Acidic leucine-rich nuc 99.7 2.7E-17 9.3E-22 124.4 11.1 133 121-261 22-160 (168)
111 1m9s_A Internalin B; cell inva 99.7 8E-17 2.7E-21 145.1 13.6 164 79-261 25-188 (605)
112 2wfh_A SLIT homolog 2 protein 99.7 3.6E-16 1.2E-20 121.1 14.6 130 102-240 13-143 (193)
113 2je0_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 121.3 8.2 127 99-256 17-148 (149)
114 2o6r_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 118.8 14.4 132 101-240 9-141 (177)
115 2je0_A Acidic leucine-rich nuc 99.7 5.3E-17 1.8E-21 120.4 8.9 108 147-261 17-126 (149)
116 1jl5_A Outer protein YOPM; leu 99.7 1E-15 3.6E-20 133.6 18.5 120 99-236 131-250 (454)
117 1xeu_A Internalin C; cellular 99.7 5.7E-16 2E-20 125.8 15.4 162 79-260 23-184 (263)
118 1jl5_A Outer protein YOPM; leu 99.7 8.7E-16 3E-20 134.1 17.3 97 76-184 132-228 (454)
119 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-15 5.8E-20 136.8 17.8 57 200-261 241-297 (622)
120 4b8c_D Glucose-repressible alc 99.7 7.8E-18 2.7E-22 154.9 2.2 118 91-217 216-333 (727)
121 1z7x_W Ribonuclease inhibitor; 99.7 6.4E-18 2.2E-22 147.6 0.7 59 201-260 342-410 (461)
122 3g39_A Variable lymphocyte rec 99.7 9.2E-16 3.1E-20 116.4 12.1 105 79-186 13-117 (170)
123 3g06_A SSPH2 (leucine-rich rep 99.7 3.2E-15 1.1E-19 134.9 17.2 165 76-261 82-274 (622)
124 4ay9_X Follicle-stimulating ho 99.7 7.7E-16 2.6E-20 130.1 12.2 172 79-260 13-190 (350)
125 1z7x_W Ribonuclease inhibitor; 99.6 1.1E-17 3.7E-22 146.2 0.2 186 76-261 171-383 (461)
126 1a9n_A U2A', U2A'; complex (nu 99.6 1.4E-15 4.9E-20 115.9 9.6 135 93-236 13-153 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.6 9.7E-16 3.3E-20 116.8 8.3 128 76-214 20-154 (176)
128 2r9u_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 111.5 12.7 104 79-185 16-119 (174)
129 1ds9_A Outer arm dynein; leuci 99.6 3.9E-18 1.3E-22 132.7 -6.3 149 96-254 15-180 (198)
130 1dce_A Protein (RAB geranylger 99.6 2.5E-14 8.7E-19 128.0 12.7 158 88-255 398-567 (567)
131 1dce_A Protein (RAB geranylger 99.6 2.3E-14 7.9E-19 128.3 12.1 121 100-230 442-567 (567)
132 3g39_A Variable lymphocyte rec 99.5 8.3E-14 2.8E-18 105.5 12.3 108 101-216 11-118 (170)
133 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 104.1 12.2 107 102-216 15-121 (174)
134 2ifg_A High affinity nerve gro 99.5 9.5E-14 3.2E-18 116.9 11.8 110 62-185 5-117 (347)
135 1ds9_A Outer arm dynein; leuci 99.5 2.9E-17 9.9E-22 127.7 -9.1 146 79-236 22-185 (198)
136 3sb4_A Hypothetical leucine ri 99.5 9.3E-14 3.2E-18 116.2 10.9 47 98-145 100-146 (329)
137 3un9_A NLR family member X1; l 99.4 3.3E-15 1.1E-19 127.1 -3.4 183 76-260 73-282 (372)
138 3sb4_A Hypothetical leucine ri 99.4 7.7E-13 2.6E-17 110.6 10.3 154 98-260 48-309 (329)
139 3un9_A NLR family member X1; l 99.4 6.9E-15 2.4E-19 125.1 -4.2 163 98-261 71-252 (372)
140 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.3E-17 110.1 9.2 106 102-215 11-118 (347)
141 3ogk_B Coronatine-insensitive 99.4 2.8E-14 9.7E-19 128.3 -1.0 62 200-261 463-526 (592)
142 3ogk_B Coronatine-insensitive 99.3 1.9E-12 6.5E-17 116.3 4.2 103 77-180 140-252 (592)
143 2p1m_B Transport inhibitor res 99.2 6.8E-12 2.3E-16 112.7 2.2 180 76-256 106-346 (594)
144 2p1m_B Transport inhibitor res 99.1 1.6E-12 5.4E-17 116.9 -2.9 180 76-260 290-518 (594)
145 4fdw_A Leucine rich hypothetic 99.1 7.7E-10 2.6E-14 94.9 13.9 173 79-259 161-356 (401)
146 4fdw_A Leucine rich hypothetic 99.1 2E-09 6.9E-14 92.3 13.6 172 79-258 139-333 (401)
147 2ra8_A Uncharacterized protein 99.1 1.5E-10 5.2E-15 97.8 6.1 165 94-261 134-320 (362)
148 2ra8_A Uncharacterized protein 98.9 1.2E-09 4E-14 92.3 4.9 162 91-259 164-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 1.4E-09 4.7E-14 83.3 0.7 119 117-236 30-164 (185)
150 1io0_A Tropomodulin; LRR prote 98.6 4E-09 1.4E-13 80.6 0.4 122 91-213 28-164 (185)
151 3rw6_A Nuclear RNA export fact 98.5 1.4E-07 4.7E-12 76.0 5.2 84 104-188 148-237 (267)
152 3rw6_A Nuclear RNA export fact 98.4 4.1E-08 1.4E-12 79.1 1.2 40 145-184 168-209 (267)
153 3e4g_A ATP synthase subunit S, 98.2 5.6E-07 1.9E-11 67.6 2.4 83 100-182 62-150 (176)
154 4fs7_A Uncharacterized protein 98.1 5.2E-05 1.8E-09 64.5 12.6 51 76-128 72-122 (394)
155 3e4g_A ATP synthase subunit S, 98.0 3.8E-06 1.3E-10 63.0 3.0 36 201-236 115-153 (176)
156 1pgv_A TMD-1, tropomodulin TMD 97.9 4.9E-06 1.7E-10 63.7 2.5 116 119-235 37-169 (197)
157 4h09_A Hypothetical leucine ri 97.7 0.00028 9.5E-09 59.6 11.4 142 95-247 213-355 (379)
158 4fs7_A Uncharacterized protein 97.7 0.00044 1.5E-08 58.7 11.8 127 119-258 249-376 (394)
159 4h09_A Hypothetical leucine ri 97.7 0.00057 2E-08 57.6 12.4 131 118-258 212-343 (379)
160 4gt6_A Cell surface protein; l 97.6 0.00028 9.6E-09 60.0 9.9 147 100-260 243-390 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.1E-05 7E-10 60.2 1.6 118 94-212 36-169 (197)
162 4gt6_A Cell surface protein; l 97.6 0.00046 1.6E-08 58.6 10.1 156 93-259 199-368 (394)
163 3rfe_A Platelet glycoprotein I 97.5 0.00019 6.4E-09 51.2 5.9 55 175-236 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.0012 4E-08 47.0 6.5 55 103-159 12-67 (130)
165 2lz0_A Uncharacterized protein 67.9 21 0.00071 23.4 6.4 45 87-132 8-52 (100)
166 2lz0_A Uncharacterized protein 60.8 32 0.0011 22.5 6.4 48 109-157 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.6e-34 Score=240.05 Aligned_cols=229 Identities=29% Similarity=0.459 Sum_probs=182.9
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCC---CCeEEEEcCCCCccc--cCcccccC
Q 042660 23 LGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPE---SGSVNLSLSGNNFTG--RIVPALGS 97 (261)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~---~~~~~L~l~~n~l~~--~~~~~~~~ 97 (261)
.+.++|..||++||+++ .+|. .+.+|... .+| |.|.|.||.|+.. ..+++|++++|++++ .+|+.+..
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~--~l~~W~~~---~~~-C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~ 74 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT--TLSSWLPT---TDC-CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLAN 74 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG--GGTTCCTT---SCT-TTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGG
T ss_pred CCCHHHHHHHHHHHHhc-CCcc--cccCCCCC---CCC-CcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhC
Confidence 35688999999999999 5675 37889753 344 6556999999864 577899999999999 89999999
Q ss_pred CCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 98 ISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 98 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 99999999995 99999999999999999999999999998899999999999999999999988999999999999999
Q ss_pred ecccCcccccCCccccccc-cCC------------------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660 177 DLSFNRFHGGLGVGADNVS-SIA------------------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~-~l~------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~ 236 (261)
++++|.+++.+|..+..+. .+. ..+|++|++++|.+++.+| .+..+++|+.|++++|.++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 9999999888888777665 331 1125566666666655555 5666666777777777766
Q ss_pred ccCcHHHHhCCCCccEEEccCccC
Q 042660 237 GMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+.++. +..+++|+.|++++|.+
T Consensus 235 ~~~~~--~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 235 FDLGK--VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CBGGG--CCCCTTCCEEECCSSCC
T ss_pred eecCc--ccccCCCCEEECcCCcc
Confidence 44443 34456777777777765
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=8e-31 Score=238.44 Aligned_cols=225 Identities=20% Similarity=0.303 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCC-------CCCcCCCCCCCCCCCCCc---ceEEcCCCCCeEEEEcCCCCccccCcccc
Q 042660 26 ESELGSLIEFKKGIQDDPLGRIH-------STWNITSLPDTKSCPVSW---TGVSCDPESGSVNLSLSGNNFTGRIVPAL 95 (261)
Q Consensus 26 ~~~~~~l~~~~~~~~~~p~~~~~-------~~w~~~~~~~~~~c~~~~---~gv~c~~~~~~~~L~l~~n~l~~~~~~~~ 95 (261)
..|..||.++|.++. ++.+... ..|+.. .+ .|.| .||+|+..+.++.|+|+++++.|.+|+++
T Consensus 29 ~~d~~aL~~~~~~~~-~~~w~~~~~~~~~~~~W~~~---~~---~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 29 IKDYLALKEIWDALN-GKNWSQQGFGTQPGANWNFN---KE---LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHTT-GGGCCCCC------CCCCCS---SC---GGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGG
T ss_pred HHHHHHHHHHHHHcC-CCCcccCCcCCccCCCCCCC---CC---cccccCCCCeEEcCCCCEEEEEecCcccCCcCChHH
Confidence 479999999999994 3333212 268753 23 2499 99999877788899999999999999999
Q ss_pred cCCCCCCEEECcCCcC----------------------------------------------------------------
Q 042660 96 GSISSLQYLDLSNNKF---------------------------------------------------------------- 111 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l---------------------------------------------------------------- 111 (261)
+++++|++|++++|.+
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 9999999999998843
Q ss_pred --------------cCCCCccccCCCCCCEEEccCCcCcCC-----------------CCcccc--CCCCCCEEEcccCc
Q 042660 112 --------------IGPIPGRITDLWGLNYLNLSMNGFKGG-----------------FPGNLR--NLQQLKVLDLRKNK 158 (261)
Q Consensus 112 --------------~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~ 158 (261)
++ +|..+.++++|++|++++|.+++. +|..++ ++++|++|++++|.
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 34 778899999999999999999985 899999 99999999999999
Q ss_pred cccccchhccCCCCCCEEecccCc-ccc-cCCcccccccc-CCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccC
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNR-FHG-GLGVGADNVSS-IANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSN 233 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n 233 (261)
+.+.+|..++++++|++|++++|. ++| .+|..+..+.. ...++|++|++++|+++..+. .++.+++|+.|++++|
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 999999999999999999999998 988 78887776510 011356888888888885444 5788888888888888
Q ss_pred cCcccCcHHHHhCCCCccEEEccCccC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.++|.+| .+..+++|+.|++++|.+
T Consensus 341 ~l~g~ip--~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 341 QLEGKLP--AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp CCEEECC--CCEEEEEESEEECCSSEE
T ss_pred cCccchh--hhCCCCCCCEEECCCCcc
Confidence 8887777 334455677777777654
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.7e-29 Score=232.92 Aligned_cols=222 Identities=26% Similarity=0.386 Sum_probs=164.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCcccc---Cc-----
Q 042660 21 VVLGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGR---IV----- 92 (261)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~~---~~----- 92 (261)
++++.++|+.||++||+++. ||. . +++|+.. .+| | .|.||+|+ .+.++.|+++++.+.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~-~~~-~-l~~W~~~---~~~-C--~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~ 75 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP-DKN-L-LPDWSSN---KNP-C--TFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLS 75 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS-CTT-S-STTCCTT---SCG-G--GSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHhhCC-Ccc-c-ccCCCCC---CCC-c--CCcceEEC-CCcEEEEECCCCCcCCccCccChhHhc
Confidence 44556799999999999995 777 4 8899743 343 4 99999998 46677999999998876 44
Q ss_pred ------------------ccccCCCCCCEEECcCCcCcCCCCc--cccCCCCCCEEEccCCcCcCCCCccc-cCCCCCCE
Q 042660 93 ------------------PALGSISSLQYLDLSNNKFIGPIPG--RITDLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKV 151 (261)
Q Consensus 93 ------------------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~ 151 (261)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ ..+++|++
T Consensus 76 L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 155 (768)
T 3rgz_A 76 LTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155 (768)
T ss_dssp CTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSE
T ss_pred cCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCE
Confidence 4566677778888888887777776 77777888888888887776666655 67777888
Q ss_pred EEcccCccccccchh---ccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEE
Q 042660 152 LDLRKNKLWGDIGGI---MSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVL 228 (261)
Q Consensus 152 L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 228 (261)
|++++|.+.+..+.. +..+++|++|++++|.+++..|. .. .++|++|++++|.+++.+|.++.+++|++|
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~-----l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 228 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SR-----CVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TT-----CTTCCEEECCSSCCCSCCCBCTTCCSCCEE
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--cc-----CCcCCEEECcCCcCCCCCcccccCCCCCEE
Confidence 888888777776665 66777777777777777654432 22 246688888888888777777778888888
Q ss_pred EcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 229 RLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 229 ~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++++|.+++.+|.. +..+++|+.|++++|.+
T Consensus 229 ~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 229 DISGNKLSGDFSRA-ISTCTELKLLNISSNQF 259 (768)
T ss_dssp ECCSSCCCSCHHHH-TTTCSSCCEEECCSSCC
T ss_pred ECcCCcCCCcccHH-HhcCCCCCEEECCCCcc
Confidence 88888887655544 45567788888887765
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=4.8e-30 Score=238.72 Aligned_cols=227 Identities=18% Similarity=0.287 Sum_probs=180.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCcCCC-CCCCCCCCCCc------------ceEEcCCCCCeEEEEcCCCCccccC
Q 042660 25 SESELGSLIEFKKGIQDDPLGRIHSTWNITS-LPDTKSCPVSW------------TGVSCDPESGSVNLSLSGNNFTGRI 91 (261)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~-~~~~~~c~~~~------------~gv~c~~~~~~~~L~l~~n~l~~~~ 91 (261)
..+|..||++||+++ .+| +|+... .+....|.|.| .||.|+..+.++.|+|+++++.|.+
T Consensus 267 ~~~d~~ALl~~k~~l-~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 267 YIKDYKALKAIWEAL-DGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp HHHHHHHHHHHHHHT-TGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred chHHHHHHHHHHHHc-CCC------CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 458999999999999 566 465432 00111134699 9999987678889999999999999
Q ss_pred cccccCCCCCCEEEC-cCCcCcCC--------------------------------------------------------
Q 042660 92 VPALGSISSLQYLDL-SNNKFIGP-------------------------------------------------------- 114 (261)
Q Consensus 92 ~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------------------------------- 114 (261)
|++++++++|++|++ ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77765433
Q ss_pred --------------------CCccccCCCCCCEEEccCCcCcC-----------------CCCcccc--CCCCCCEEEcc
Q 042660 115 --------------------IPGRITDLWGLNYLNLSMNGFKG-----------------GFPGNLR--NLQQLKVLDLR 155 (261)
Q Consensus 115 --------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~l~ 155 (261)
+|..+.++++|++|++++|.+++ .+|..++ ++++|+.|+++
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 77888999999999999999998 3898887 99999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCc-ccc-cCCccccccc--cCCCCCccEEEcccCccCccCc--cCCCCCCCCEEE
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNR-FHG-GLGVGADNVS--SIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLR 229 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~~~--~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~ 229 (261)
+|.+.+.+|..++++++|+.|++++|. ++| .+|..+..+. ....++|+.|++++|.++..++ .+..+++|+.|+
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence 999999999999999999999999998 888 7887776653 1122466888888888874444 477777788888
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+++|.++ .+| .+..+++|+.|++++|.++
T Consensus 580 Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 580 CVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CTTSCCC-BCC--CCCTTSEESEEECCSSCCS
T ss_pred CCCCCcc-cch--hhcCCCcceEEECcCCccc
Confidence 8888777 666 3455567777777777653
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.1e-29 Score=213.30 Aligned_cols=230 Identities=20% Similarity=0.306 Sum_probs=158.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCC---------CCCeEEEEcCCCCccccCcc
Q 042660 23 LGSESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDP---------ESGSVNLSLSGNNFTGRIVP 93 (261)
Q Consensus 23 ~~~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~---------~~~~~~L~l~~n~l~~~~~~ 93 (261)
++..++..||++||..+..+|.+. ...|........ ..|.|.|+.|.. ...++.|++++|+++ .+|+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~-~~~w~~~~~~~~--~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNP--QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTH-HHHHHHHTTTCT--TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccCchHHHHHHHHHHhccCCchhh-hhhhcccccccc--cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 345689999999999987777664 678852211122 234999999952 246668888888887 6677
Q ss_pred cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccC----
Q 042660 94 ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE---- 169 (261)
Q Consensus 94 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---- 169 (261)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 7777888888888888887 67777777888888888888777 56777777777777777776666665554432
Q ss_pred -----CCCCCEEecccCcccccCCccccccccCC------------------CCCccEEEcccCccCccCc-cCCCCCCC
Q 042660 170 -----LKNVEFVDLSFNRFHGGLGVGADNVSSIA------------------NTNLEVLDLGDNGITGELP-SFGMLPNL 225 (261)
Q Consensus 170 -----l~~L~~L~l~~n~l~~~~p~~~~~~~~l~------------------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L 225 (261)
+++|++|++++|.++ .+|..+..+..+. .++|++|++++|.+.+..| .+..+++|
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 555666666555554 4444444433221 2456777777777777666 67777777
Q ss_pred CEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 226 KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+.|++++|.+.+.+|..+ ..+++|+.|++++|++
T Consensus 256 ~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVN 289 (328)
T ss_dssp CEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTT
T ss_pred CEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCc
Confidence 777777777777776654 4566788888887764
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=8e-26 Score=184.73 Aligned_cols=197 Identities=25% Similarity=0.334 Sum_probs=169.6
Q ss_pred CCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660 59 TKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL 128 (261)
Q Consensus 59 ~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 128 (261)
.|.|...+..+.|... .....|++++|++++..+..+..+++|++|++++|.+....+..|..+++|++|
T Consensus 11 ~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 11 VCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL 90 (270)
T ss_dssp SBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred CCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence 3334446777888632 234589999999998777889999999999999999998777778999999999
Q ss_pred EccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcc
Q 042660 129 NLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLG 208 (261)
Q Consensus 129 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls 208 (261)
++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+ ++|++|+++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~ 165 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-----TSLKELRLY 165 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECC
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC-----cccceeEec
Confidence 999999998777788999999999999999999888889999999999999999986655555555 466999999
Q ss_pred cCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 209 DNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 209 ~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|++++.++ .+..+++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCee
Confidence 999998877 6889999999999999998 677777778889999999999863
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=4.3e-26 Score=184.39 Aligned_cols=186 Identities=24% Similarity=0.351 Sum_probs=146.4
Q ss_pred CcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc
Q 042660 65 SWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR 144 (261)
Q Consensus 65 ~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 144 (261)
.|.|..|.. +..+++++++.++ .+|..+. +.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus 6 ~~~gC~C~~--~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 6 TVTGCTCNE--GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp HHHSSEEEG--GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCceEcCC--CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 677778842 3346788888887 4555444 5788888888888888888888888888888888888887777788
Q ss_pred CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCC
Q 042660 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP 223 (261)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~ 223 (261)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+. +|++|+|++|++++.++ .+..++
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----KLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----cccEEECcCCcCCccCHHHcCcCc
Confidence 888888888888888877777888888888888888888765555455553 55888888888887777 688888
Q ss_pred CCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 224 NLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 224 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus 156 ~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence 8888888888888 566666677778888888888764
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.4e-25 Score=183.19 Aligned_cols=182 Identities=24% Similarity=0.253 Sum_probs=110.7
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-CcCCCCccccCCCCCCEEEccc
Q 042660 78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG-FKGGFPGNLRNLQQLKVLDLRK 156 (261)
Q Consensus 78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~l~~ 156 (261)
.+|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|. ++...|..+..+++|++|++++
T Consensus 35 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~ 114 (285)
T 1ozn_A 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114 (285)
T ss_dssp SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCC
Confidence 366666666665555556666666666666666665555555556666666666664 5444455555555555555555
Q ss_pred CccccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCccCc
Q 042660 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGELP 217 (261)
Q Consensus 157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~~~ 217 (261)
|.+.+..+..+..+++|++|++++|.+++..+..+..+..+. .++|++|++++|.+++..|
T Consensus 115 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (285)
T 1ozn_A 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH
Confidence 555555555555555555555555555433333333332221 2456777777777777666
Q ss_pred -cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 218 -SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 218 -~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.+..+++|+.|++++|.++ .++.+.+..+++|+.|++++|++
T Consensus 195 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCE
T ss_pred hHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCc
Confidence 6777778888888888887 46666666777888888888875
No 9
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=194.48 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=95.3
Q ss_pred CCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCE
Q 042660 58 DTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNY 127 (261)
Q Consensus 58 ~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 127 (261)
..|.|...+..|.|... .....|++++|++++..+..|.++++|++|++++|.+.++.+..|.++++|++
T Consensus 37 ~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 116 (440)
T 3zyj_A 37 SVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116 (440)
T ss_dssp SSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE
T ss_pred CCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE
Confidence 34445445678888642 23458999999999888888999999999999999998888888888999999
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 128 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
|++++|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence 99999998876666788888899999988888766655566656666666555
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.5e-25 Score=180.91 Aligned_cols=189 Identities=25% Similarity=0.296 Sum_probs=164.3
Q ss_pred CCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccc
Q 042660 64 VSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL 143 (261)
Q Consensus 64 ~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 143 (261)
|.|.|+.|.-......+++++++++. +|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.++...+..|
T Consensus 5 C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 5 CKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp BGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence 48999988644455689999999994 665544 579999999999998888899999999999999999997666677
Q ss_pred cCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCC
Q 042660 144 RNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGML 222 (261)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~ 222 (261)
..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+. +|++|++++|.+++.++ .+..+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----KLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----CCCEEECCCCcCCccCHhHccCC
Confidence 8999999999999999888888899999999999999999877766666654 56999999999998777 68999
Q ss_pred CCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 223 PNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 223 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|+.|++++|.++ .++...+..+++|+.|++++|+++
T Consensus 157 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 157 TSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCC
Confidence 99999999999998 677777777889999999999874
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.9e-25 Score=192.24 Aligned_cols=202 Identities=23% Similarity=0.231 Sum_probs=130.3
Q ss_pred CCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCE
Q 042660 58 DTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNY 127 (261)
Q Consensus 58 ~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 127 (261)
..|.|...+..|.|... .....|++++|++++..+..|.++++|++|++++|.+.++.+..|.++++|++
T Consensus 48 ~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 127 (452)
T 3zyi_A 48 SVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127 (452)
T ss_dssp TTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE
Confidence 34334334677888642 24558999999999988999999999999999999999888899999999999
Q ss_pred EEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCC--------
Q 042660 128 LNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIA-------- 198 (261)
Q Consensus 128 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~-------- 198 (261)
|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|...+.++ ..+..+..+.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence 9999999998777778899999999999999876666556555555555555532222221 1222221111
Q ss_pred ---------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 199 ---------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 199 ---------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.++|++|+|++|.+++..| .+..+++|+.|++++|.+++ ++...+..+++|+.|+|++|++
T Consensus 208 l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 208 IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCC
T ss_pred ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcC
Confidence 1344555555555554444 44444445555554444442 2222233344444444444443
No 12
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=6.4e-25 Score=182.41 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=114.2
Q ss_pred CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-----------------
Q 042660 62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP----------------- 114 (261)
Q Consensus 62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------- 114 (261)
|.|.|.++.|... ....+|++++|+++...+..+..+++|++|++++|.+...
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 6679999999752 2445888998888855555577888888888888877522
Q ss_pred --------CCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc
Q 042660 115 --------IPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185 (261)
Q Consensus 115 --------~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (261)
+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 12234444555555555555544322 345555666666666666555555555566666666666666654
Q ss_pred -cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 186 -GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 186 -~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
..|..+..+. +|++|++++|.+++..| .+..+++|+.|++++|.++ .++...+..+++|+.|++++|++
T Consensus 165 ~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 165 NFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp GEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCC
T ss_pred ccchhHHhhCc-----CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCC
Confidence 3444444432 44666666666665545 5555666666666666665 33333344455566666666554
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.4e-25 Score=187.15 Aligned_cols=183 Identities=26% Similarity=0.440 Sum_probs=154.6
Q ss_pred eEEEEcCC-CCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 77 SVNLSLSG-NNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 77 ~~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 34888884 88888888888889999999999999988888888888999999999999888888888888899999999
Q ss_pred cCccccccchhccCCC-CCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccCcc
Q 042660 156 KNKLWGDIGGIMSELK-NVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGITGE 215 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~~~ 215 (261)
+|.+.+.+|..+..++ +|++|++++|.+++..|..+..+. +. .++|+.|++++|.+++.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9988888888888887 888888888888877776665543 21 36789999999999988
Q ss_pred CccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 216 LPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 216 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|.+..+++|++|++++|.+++.+|..+ ..+++|+.|++++|+++
T Consensus 237 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp GGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSSEEE
T ss_pred cCcccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCCccc
Confidence 8888888999999999999998887665 55789999999999863
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=7.5e-25 Score=203.19 Aligned_cols=181 Identities=30% Similarity=0.487 Sum_probs=112.0
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|.
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 56666666666666666666666666666666666666666666666666666666666666666666677777777777
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccC-----------------------------------------
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI----------------------------------------- 197 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l----------------------------------------- 197 (261)
+.+.+|..+..+++|+.|++++|.++|.+|..+......
T Consensus 526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (768)
T 3rgz_A 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605 (768)
T ss_dssp CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence 766666666667777777777777666666544321100
Q ss_pred ------------------------CCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660 198 ------------------------ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252 (261)
Q Consensus 198 ------------------------~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 252 (261)
...+|+.|++++|+++|.+| .++.++.|+.|+|++|.++|.+|..+ ..+++|+.
T Consensus 606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~L~~L~~ 684 (768)
T 3rgz_A 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GDLRGLNI 684 (768)
T ss_dssp GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCE
T ss_pred ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-hCCCCCCE
Confidence 01345566666666666555 56666666666666666666665544 33455666
Q ss_pred EEccCccC
Q 042660 253 LDLSGNGF 260 (261)
Q Consensus 253 L~L~~N~l 260 (261)
|||++|++
T Consensus 685 LdLs~N~l 692 (768)
T 3rgz_A 685 LDLSSNKL 692 (768)
T ss_dssp EECCSSCC
T ss_pred EECCCCcc
Confidence 66666554
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=9.6e-25 Score=184.96 Aligned_cols=180 Identities=21% Similarity=0.192 Sum_probs=157.7
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|++++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45699999999998777789999999999999999998888899999999999999999997555568999999999999
Q ss_pred cCccccccc-hhccCCCCCCEEecccCc-ccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660 156 KNKLWGDIG-GIMSELKNVEFVDLSFNR-FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS 232 (261)
Q Consensus 156 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~ 232 (261)
+|.+....+ ..+..+++|++|++++|. +.+..+..+..+ ++|++|++++|.+++..| .+..+++|++|++++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-----TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-----CCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 999976555 578999999999999994 665555666655 466999999999998877 899999999999999
Q ss_pred CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 233 NQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 233 n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|.++ .+|...+..+++|+.|++++|.++
T Consensus 208 n~l~-~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 208 KQHI-LLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp SCST-THHHHHHHHTTTEEEEEEESCBCT
T ss_pred Cccc-cchhhhhhhcccccEEECCCCccc
Confidence 9997 788877777889999999999874
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.7e-24 Score=188.27 Aligned_cols=196 Identities=22% Similarity=0.256 Sum_probs=151.6
Q ss_pred CCCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCC
Q 042660 57 PDTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLN 126 (261)
Q Consensus 57 ~~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 126 (261)
|..|.|...|..|.|... .....|++++|++++..+..|..+++|++|++++|.+.+..|..|.++++|+
T Consensus 4 p~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 83 (477)
T 2id5_A 4 PPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR 83 (477)
T ss_dssp STTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC
Confidence 445545446778999642 2344899999999988889999999999999999999998899999999999
Q ss_pred EEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEE
Q 042660 127 YLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLD 206 (261)
Q Consensus 127 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~ 206 (261)
+|++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+. +|++|+
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~ 158 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN-----SLEQLT 158 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT-----TCCEEE
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC-----CCCEEE
Confidence 999999999976667789999999999999999998899999999999999999999877777776654 447777
Q ss_pred cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
+++|.+++.++ .+..+++|+.|++++|.+++ ++...+..+.+|+.|++++|
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECC
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCC
Confidence 77777765555 46666666666666666653 33333334444444444443
No 17
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=2.1e-23 Score=175.10 Aligned_cols=196 Identities=24% Similarity=0.286 Sum_probs=130.2
Q ss_pred CCCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEc
Q 042660 61 SCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNL 130 (261)
Q Consensus 61 ~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 130 (261)
.|.|.+..+.|... .....|++++|++++..+..+..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 36679999999642 23458999999999888888999999999999999999888999999999999999
Q ss_pred cCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc--cCCccccccccCC----------
Q 042660 131 SMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG--GLGVGADNVSSIA---------- 198 (261)
Q Consensus 131 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~---------- 198 (261)
++|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+..+.
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 9999884 555443 567777777777766666666666666666666666642 3333333332221
Q ss_pred ------CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 199 ------NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 199 ------~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.++|++|++++|.+++..+ .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus 185 ~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 185 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGSTTCCEEECCSSCC
T ss_pred cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCCCCCEEECCCCcC
Confidence 1345555555555555444 45555555555555555553 2222233344555555555544
No 18
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=4.4e-24 Score=171.27 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=146.8
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCc-CcCCCCccccCCCCCCEEEccC-CcCcCCCCccccCCCCCCEEE
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNK-FIGPIPGRITDLWGLNYLNLSM-NGFKGGFPGNLRNLQQLKVLD 153 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ 153 (261)
....|++++|++++..+..+..+++|++|++++|. +..+.+..|.++++|++|++++ |.++...+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56689999999998778789999999999999997 8877777899999999999998 999977778899999999999
Q ss_pred cccCccccccchhccCCCCCC---EEecccC-cccccCCccccccccCCCCCcc-EEEcccCccCccCc-cCCCCCCCCE
Q 042660 154 LRKNKLWGDIGGIMSELKNVE---FVDLSFN-RFHGGLGVGADNVSSIANTNLE-VLDLGDNGITGELP-SFGMLPNLKV 227 (261)
Q Consensus 154 l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~l~~~~L~-~L~Ls~n~l~~~~~-~~~~~~~L~~ 227 (261)
+++|.+.+ +|. +..+++|+ +|++++| .+++..+..+..+. +|+ +|++++|+++..++ .+.. ++|+.
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----SSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh-----cceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 99999977 555 78888888 9999999 88766555566554 458 89999998885555 4444 78889
Q ss_pred EEcccCc-CcccCcHHHHhCC-CCccEEEccCccCC
Q 042660 228 LRLGSNQ-LFGMIPEELLESV-IPIQELDLSGNGFT 261 (261)
Q Consensus 228 L~L~~n~-l~~~~~~~~~~~~-~~L~~L~L~~N~ls 261 (261)
|++++|+ ++ .++...+..+ ++|+.|++++|+++
T Consensus 184 L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 184 VYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred EEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccc
Confidence 9999985 87 6777777777 78899999888774
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.4e-23 Score=174.87 Aligned_cols=194 Identities=24% Similarity=0.260 Sum_probs=133.6
Q ss_pred CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660 62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS 131 (261)
Q Consensus 62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 131 (261)
|.|.|..+.|... .....|++++|.+++..+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6678999999642 244589999999998888899999999999999999998889999999999999999
Q ss_pred CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc--cCCccccccccCC-----------
Q 042660 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG--GLGVGADNVSSIA----------- 198 (261)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~----------- 198 (261)
+|.++. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ .+.
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999984 665554 789999999999887777778888889999998888852 334333322 110
Q ss_pred -----CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 199 -----NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 199 -----~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.++|++|++++|.+++..+ .+..+++|+.|++++|.+++ ++...+..+++|+.|++++|++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l 253 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKL 253 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCC
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcC
Confidence 1244555555555544443 44444444444444444442 2222233334444444444443
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=5.4e-24 Score=190.17 Aligned_cols=180 Identities=18% Similarity=0.171 Sum_probs=157.9
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|++++..|..+.++++|++|++++|++.+..|..|.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 45699999999998889999999999999999999999888999999999999999999998777779999999999999
Q ss_pred cCcccc-ccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660 156 KNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS 232 (261)
Q Consensus 156 ~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~ 232 (261)
+|.+.+ ..|..++.+++|++|++++|.+.+.+| ..+..+ ++|++|++++|.+++..| .+..+++|+.|+++.
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL-----TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc-----cccCeeeccCCcccccChhhhhccccCceEeccc
Confidence 999987 457789999999999999998554554 455555 467999999999998777 888899999999999
Q ss_pred CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 233 NQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 233 n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|.+. .+|..++..+++|+.|++++|+++
T Consensus 182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 182 SESA-FLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp SBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred Cccc-ccchhhHhhcccccEEEccCCccc
Confidence 9886 677777777789999999998764
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=6.9e-23 Score=165.52 Aligned_cols=169 Identities=23% Similarity=0.278 Sum_probs=150.7
Q ss_pred CcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc
Q 042660 65 SWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG 134 (261)
Q Consensus 65 ~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 134 (261)
.+..+.|... .....|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 5677777632 234589999999999888899999999999999999999998889999999999999999
Q ss_pred CcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660 135 FKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG 214 (261)
Q Consensus 135 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~ 214 (261)
+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+. +|+.|+|++|++++
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-----NLQTLSLSTNQLQS 169 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSC
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc-----CCCEEECCCCcCCc
Confidence 9987778889999999999999999988888889999999999999999876665666664 56999999999998
Q ss_pred cCc-cCCCCCCCCEEEcccCcCccc
Q 042660 215 ELP-SFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 215 ~~~-~~~~~~~L~~L~L~~n~l~~~ 238 (261)
.++ .+..+++|+.|++++|.+++.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 887 788999999999999999865
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.1e-23 Score=169.75 Aligned_cols=180 Identities=24% Similarity=0.211 Sum_probs=105.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 56 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 135 (276)
T 2z62_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence 45555555544444444455555555555555554444445555555555555555554334345555555555555555
Q ss_pred cccc-cchhccCCCCCCEEecccCcccccCCccccccccCCCCCcc-EEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660 159 LWGD-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLE-VLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 159 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~-~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 236 (261)
+.+. +|..+..+++|++|++++|.+++..+..+..+..+ ..+. .|++++|.+++.++......+|+.|++++|.++
T Consensus 136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM--PLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC--TTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc--cccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence 5442 35555555555555555555554444444444332 1122 677777777766554444458999999999998
Q ss_pred ccCcHHHHhCCCCccEEEccCccCC
Q 042660 237 GMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.+|...+..+++|+.|++++|+++
T Consensus 214 -~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 214 -SVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp -CCCTTTTTTCCSCCEEECCSSCBC
T ss_pred -ecCHhHhcccccccEEEccCCccc
Confidence 677777788889999999999874
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.5e-23 Score=164.65 Aligned_cols=171 Identities=27% Similarity=0.303 Sum_probs=129.9
Q ss_pred CCCCcceEEcCCCC----------CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660 62 CPVSWTGVSCDPES----------GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS 131 (261)
Q Consensus 62 c~~~~~gv~c~~~~----------~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 131 (261)
|.|.|.++.|...+ ...+|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 66799999997422 34478888888886666667788888888888888887766677788888888888
Q ss_pred CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211 (261)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~ 211 (261)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+ ++|+.|++++|.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~ 159 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-----TSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSCC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC-----CCccEEEecCCC
Confidence 888886666667788888888888888877777777888888888888888875555445444 355888888887
Q ss_pred cCccCccCCCCCCCCEEEcccCcCcccCcHHH
Q 042660 212 ITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL 243 (261)
Q Consensus 212 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 243 (261)
+. +.++.|+.|+++.|.++|.+|..+
T Consensus 160 ~~------~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 160 WD------CTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp BC------CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ee------cCCCCHHHHHHHHHhCCceeeccC
Confidence 66 345577788888888888887654
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.6e-23 Score=168.76 Aligned_cols=177 Identities=25% Similarity=0.203 Sum_probs=155.8
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
.....|++++|.+++..+..+..+++|++|++++|.+++..+. ..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 3556899999999988889999999999999999999865443 78999999999999998 57888999999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN 233 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n 233 (261)
++|++++..+..|..+++|++|++++|.+++..+..+..+ ++|+.|+|++|++++.++ .+..+++|+.|++++|
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT-----PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc-----cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 9999998888999999999999999999987666555555 456999999999997777 6788999999999999
Q ss_pred cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.++ .+|..++. ..+|+.+++++|++.
T Consensus 183 ~l~-~ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 183 SLY-TIPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred cCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence 998 88888765 468999999999863
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-22 Score=165.13 Aligned_cols=175 Identities=26% Similarity=0.363 Sum_probs=117.7
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|+++++.++. .+.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 34467777776663 22466677777777777777653 356677777777777777776556666777777777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~ 234 (261)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|++++.++ .+..+++|+.|++++|.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 7777766666677777777777777777655444444443 45777777777776655 46667777777777777
Q ss_pred CcccCcHHHHhCCCCccEEEccCccC
Q 042660 235 LFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+++ +++..+..+++|+.|++++|++
T Consensus 193 l~~-~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 193 LKS-VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-cCHHHHhCCcCCCEEEccCCCc
Confidence 773 4445555666777777777765
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=2.1e-23 Score=170.84 Aligned_cols=179 Identities=26% Similarity=0.217 Sum_probs=155.8
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|++++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45699999999998888899999999999999999998888889999999999999999998888899999999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCccccc-CCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC----EEE
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGG-LGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK----VLR 229 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~----~L~ 229 (261)
+|.+.+..+..+..+++|++|++++|.+++. +|..+..+. +|++|++++|++++.++ .+..+.+|+ .|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-----CCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 9999888777899999999999999999863 577777664 56999999999998766 666666666 899
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+++|.++ .++...+.. .+|+.|++++|.++
T Consensus 184 ls~n~l~-~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 184 LSLNPMN-FIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp CCSSCCC-EECTTSSCS-CCEEEEECCSSCCS
T ss_pred cCCCccc-ccCccccCC-CcccEEECCCCcee
Confidence 9999998 555555443 48999999999874
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=3.6e-23 Score=171.85 Aligned_cols=179 Identities=24% Similarity=0.325 Sum_probs=156.2
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 79 ~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 157 (306)
T 2z66_A 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 157 (306)
T ss_dssp CCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence 4558889998888 467778999999999999999997665 67899999999999999999888899999999999999
Q ss_pred ccCcccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEccc
Q 042660 155 RKNKLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGS 232 (261)
Q Consensus 155 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~ 232 (261)
++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..+ .+..+++|+.|++++
T Consensus 158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC-----CCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 9999987 6888999999999999999999987777776664 56999999999998777 788999999999999
Q ss_pred CcCcccCcHHHHhCC-CCccEEEccCccCC
Q 042660 233 NQLFGMIPEELLESV-IPIQELDLSGNGFT 261 (261)
Q Consensus 233 n~l~~~~~~~~~~~~-~~L~~L~L~~N~ls 261 (261)
|.+++..+..+ ..+ .+|+.|++++|+++
T Consensus 233 N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 233 NHIMTSKKQEL-QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCBCSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred CCCcccCHHHH-HhhhccCCEEEccCCCee
Confidence 99997666554 444 48999999999863
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=8.9e-23 Score=178.25 Aligned_cols=127 Identities=22% Similarity=0.199 Sum_probs=82.0
Q ss_pred CCCCcceEEcCCC---------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCC-CccccCCCCCCEEEcc
Q 042660 62 CPVSWTGVSCDPE---------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI-PGRITDLWGLNYLNLS 131 (261)
Q Consensus 62 c~~~~~gv~c~~~---------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 131 (261)
|.|....+.|... .....|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 8 c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 8 CSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp CEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred eEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 5445555777642 23457888888888777777777777777777777776433 4556777777777777
Q ss_pred CCcCcCCCCccccCCCCCCEEEcccCccccccchh--ccCCCCCCEEecccCcccccCC
Q 042660 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGI--MSELKNVEFVDLSFNRFHGGLG 188 (261)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p 188 (261)
+|.+++..|..++++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence 77776666666666666666666666665533332 5555555555555555554434
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.6e-22 Score=176.62 Aligned_cols=131 Identities=27% Similarity=0.269 Sum_probs=92.6
Q ss_pred CCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccE
Q 042660 125 LNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEV 204 (261)
Q Consensus 125 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~ 204 (261)
|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+ ++|++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~ 351 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL-----DKLEV 351 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTC-----TTCCE
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCc-----ccCCE
Confidence 3333333333333345555666666666666666666666666666777777777777665555555444 45699
Q ss_pred EEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 205 LDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 205 L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|++++|++++..| .+..+++|++|++++|.++ .+|.+.+..+++|+.|++++|+++
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCcccccChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcc
Confidence 9999999988777 7888999999999999998 577777777889999999999874
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=164.97 Aligned_cols=175 Identities=24% Similarity=0.268 Sum_probs=152.3
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....++++++++++. +|..+. +.+++|++++|.+.+..+..|..+++|++|++++|.+++. +.. ..+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEEC
Confidence 456688999999984 555543 6899999999999988889999999999999999999864 332 78999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN 233 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n 233 (261)
++|.+. .+|..+..+++|++|++++|.+++..+..+..+. +|++|++++|++++.++ .+..+++|+.|++++|
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----CCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 999996 6677889999999999999999977667777664 56999999999998777 6889999999999999
Q ss_pred cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+++ .+|...+..+++|+.|++++|+++
T Consensus 159 ~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 159 NLT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 998 788888888899999999999875
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.6e-22 Score=172.18 Aligned_cols=107 Identities=20% Similarity=0.117 Sum_probs=81.1
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.|++++|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 73 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 152 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 152 (390)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence 67777777776666677777788888888888777777777778888888888888775444446777888888888888
Q ss_pred cccccchhccCCCCCCEEecccCcccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHG 185 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (261)
+.+..+..+..+++|++|++++|.+++
T Consensus 153 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 153 LERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred cCccChhhccCCCCCCEEECCCCcCCc
Confidence 877777777778888888888887764
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.6e-22 Score=169.73 Aligned_cols=175 Identities=21% Similarity=0.242 Sum_probs=136.3
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccC---------CCCCCEEEccCCcCcCCCCccccCCC
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITD---------LWGLNYLNLSMNGFKGGFPGNLRNLQ 147 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~l~ 147 (261)
...|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..++.++
T Consensus 129 L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~ 206 (328)
T 4fcg_A 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ 206 (328)
T ss_dssp CSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCT
T ss_pred CCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCC
Confidence 346677777776 55666777777777777776666666665543 777777777777777 5677777788
Q ss_pred CCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC
Q 042660 148 QLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK 226 (261)
Q Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~ 226 (261)
+|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+. +|++|++++|.+.+..| .+..+++|+
T Consensus 207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-----~L~~L~L~~n~~~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLE 280 (328)
T ss_dssp TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-----CCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCC-----CCCEEECCCCCchhhcchhhhcCCCCC
Confidence 88888888888865 455677888888888888888888877776664 56999999999998888 889999999
Q ss_pred EEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 227 VLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 227 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.|++++|.+.+.+|..+ ..+++++.+++..|.+
T Consensus 281 ~L~L~~n~~~~~iP~~l-~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLI-AQLPANCIILVPPHLQ 313 (328)
T ss_dssp EEECTTCTTCCCCCGGG-GGSCTTCEEECCGGGS
T ss_pred EEeCCCCCchhhccHHH-hhccCceEEeCCHHHH
Confidence 99999999999999776 4578999999987754
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=6.2e-22 Score=162.78 Aligned_cols=174 Identities=20% Similarity=0.153 Sum_probs=131.8
Q ss_pred EEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 78 VNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 78 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
+.++.++++++. +|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456777777774 45433 468999999999999888888999999999999999999878999999999999999999
Q ss_pred c-cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcC
Q 042660 158 K-LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 158 ~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l 235 (261)
. +....+..+..+++|++|++++|.+++..|..+..+.. |++|++++|++++.++ .+..+++|+.|++++|.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-----LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC-----CCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence 7 87777889999999999999999999777776666644 4666666666665444 455566666666666666
Q ss_pred cccCcHHHHhCCCCccEEEccCccC
Q 042660 236 FGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+ .++...+..+++|+.|++++|.+
T Consensus 166 ~-~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 166 S-SVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp C-EECTTTTTTCTTCCEEECCSSCC
T ss_pred c-ccCHHHhcCccccCEEECCCCcc
Confidence 5 34444344445555555555544
No 34
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.89 E-value=2.6e-22 Score=170.58 Aligned_cols=173 Identities=26% Similarity=0.205 Sum_probs=140.9
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCcccc-CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRIT-DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
.+++++++++. +|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 35556666764 555443 3588999999999988888787 8999999999999999877788999999999999999
Q ss_pred ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cC---CCCCCCCEEEcccC
Q 042660 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SF---GMLPNLKVLRLGSN 233 (261)
Q Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~---~~~~~L~~L~L~~n 233 (261)
++....+..|..+++|++|++++|.+++..|..+..+. +|+.|+|++|++++.++ .+ ..+++|+.|+|++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 99888888899999999999999999877777777664 56999999999997666 44 56889999999999
Q ss_pred cCcccCcHHHHhCCCC--ccEEEccCccC
Q 042660 234 QLFGMIPEELLESVIP--IQELDLSGNGF 260 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~--L~~L~L~~N~l 260 (261)
.|+ .+|...+..++. ++.|++++|++
T Consensus 174 ~l~-~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 174 KLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence 998 677776666664 58899999986
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=7.9e-23 Score=173.15 Aligned_cols=186 Identities=19% Similarity=0.226 Sum_probs=154.1
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEE
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLD 153 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ 153 (261)
.....|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.++...+ ..+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~ 155 (353)
T 2z80_A 76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR 155 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEE
Confidence 355689999999998888889999999999999999997666668999999999999999986433 4788999999999
Q ss_pred cccC-ccccccchhccCCCCCCEEecccCcccccCCccccccccCC-------------------CCCccEEEcccCccC
Q 042660 154 LRKN-KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA-------------------NTNLEVLDLGDNGIT 213 (261)
Q Consensus 154 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~-------------------~~~L~~L~Ls~n~l~ 213 (261)
+++| .+....+..+..+++|++|++++|.+++..|..+..+..+. .++|+.|++++|.++
T Consensus 156 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9998 46666678889999999999999999887777776654432 357788888888887
Q ss_pred ccCc--------------------------------cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 214 GELP--------------------------------SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 214 ~~~~--------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+..+ .+..+++|+.|++++|.++ .+|..++..+++|+.|++++|+++
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 6332 2456788999999999998 788888788889999999999874
No 36
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.3e-23 Score=172.00 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=55.5
Q ss_pred eEEEEcCCCCccccCcccc--cCCCCCCEEECcCCcCcCCCCccccCC-----CCCCEEEccCCcCcCCCCccccCCCCC
Q 042660 77 SVNLSLSGNNFTGRIVPAL--GSISSLQYLDLSNNKFIGPIPGRITDL-----WGLNYLNLSMNGFKGGFPGNLRNLQQL 149 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L 149 (261)
..+|++++|.+++.+|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+++..|..++.+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 3355555555555555544 5555555555555555544 4444443 555555555555555444555555555
Q ss_pred CEEEcccCccccc--cchhc--cCCCCCCEEecccCccc
Q 042660 150 KVLDLRKNKLWGD--IGGIM--SELKNVEFVDLSFNRFH 184 (261)
Q Consensus 150 ~~L~l~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~ 184 (261)
++|++++|++.+. .+..+ ..+++|++|++++|.++
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 5555555554433 12222 44455555555555543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=7.1e-22 Score=178.39 Aligned_cols=108 Identities=19% Similarity=0.106 Sum_probs=86.1
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.|++++|.+++..+..+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+..|+.+++|++|++++|.
T Consensus 79 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~ 158 (597)
T 3oja_B 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158 (597)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence 67788888877777778888888888888888887777777888888888888888886555556788888888888888
Q ss_pred cccccchhccCCCCCCEEecccCccccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGG 186 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 186 (261)
+.+..|..+..+++|++|++++|.+++.
T Consensus 159 l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 159 LERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 8887777888888888888888877653
No 38
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=1.7e-21 Score=155.32 Aligned_cols=159 Identities=25% Similarity=0.277 Sum_probs=134.0
Q ss_pred CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660 62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
|.|+|.+|.|.. ++++ .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.++...+.
T Consensus 17 ~~Cs~~~v~c~~-----------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 17 CSCSGTTVDCRS-----------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp CEEETTEEECTT-----------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CEEeCCEeEccC-----------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 566999998863 3343 3444433 7899999999999998899999999999999999999876667
Q ss_pred cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCC
Q 042660 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFG 220 (261)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~ 220 (261)
.|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+. +|+.|+|++|++++.++ .+.
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~ 156 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----HLTHLALDQNQLKSIPHGAFD 156 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----TCSEEECCSSCCCCCCTTTTT
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----CCCEEECCCCcCCccCHHHHh
Confidence 7889999999999999998888888899999999999999998 6677665554 56999999999998777 688
Q ss_pred CCCCCCEEEcccCcCcccCc
Q 042660 221 MLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 221 ~~~~L~~L~L~~n~l~~~~~ 240 (261)
.+++|+.|++++|.+.+..+
T Consensus 157 ~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TCTTCCEEECTTSCBCTTBG
T ss_pred CCCCCCEEEeeCCCccCCcc
Confidence 89999999999999986554
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.7e-22 Score=182.61 Aligned_cols=178 Identities=24% Similarity=0.216 Sum_probs=155.7
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 45699999999998888899999999999999999998889999999999999999999998889999999999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCC----CEEE
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNL----KVLR 229 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L----~~L~ 229 (261)
+|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+. +|++|++++|++++..+ .+..+.+| ..|+
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-----NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-----TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-----CCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 999988888889999999999999999986 5688777775 55999999999998777 66665554 4899
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+++|.++ .++...+... +|+.|++++|.+
T Consensus 188 l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~ 216 (606)
T 3vq2_A 188 MSLNPID-FIQDQAFQGI-KLHELTLRGNFN 216 (606)
T ss_dssp CTTCCCC-EECTTTTTTC-EEEEEEEESCCS
T ss_pred ccCCCcc-eeCcccccCc-eeeeeeccCCcc
Confidence 9999998 5666666544 899999999875
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5.1e-22 Score=162.30 Aligned_cols=159 Identities=26% Similarity=0.308 Sum_probs=141.5
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
.....|++++|.+++. +.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4566899999999873 47889999999999999999888888999999999999999999877778899999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccC
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSN 233 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n 233 (261)
++|.+.+..+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|.+++.++ .+..+++|+.|++++|
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc-----cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 99999988888899999999999999999876666566554 56999999999998888 6889999999999999
Q ss_pred cCcccCc
Q 042660 234 QLFGMIP 240 (261)
Q Consensus 234 ~l~~~~~ 240 (261)
.+.+..|
T Consensus 216 ~~~~~~~ 222 (272)
T 3rfs_A 216 PWDCTCP 222 (272)
T ss_dssp CBCCCTT
T ss_pred CccccCc
Confidence 9986554
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=9e-22 Score=171.47 Aligned_cols=179 Identities=21% Similarity=0.229 Sum_probs=123.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 45588999999988778888889999999999999987777788888899999999888886556566667777777776
Q ss_pred cCc-cccccchhccCCCCCCEEecccCcc----------------------cccCCccccccccCCCCCccEEEcccCcc
Q 042660 156 KNK-LWGDIGGIMSELKNVEFVDLSFNRF----------------------HGGLGVGADNVSSIANTNLEVLDLGDNGI 212 (261)
Q Consensus 156 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~l----------------------~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l 212 (261)
+|. +....+..+..+++|++|++++|.+ ++..|..+..+ ++|+.|++++|++
T Consensus 169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n~l 243 (440)
T 3zyj_A 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL-----MHLQKLWMIQSQI 243 (440)
T ss_dssp CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTCCC
T ss_pred CCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccC-----ccCCEEECCCCce
Confidence 633 3333333455555555555555554 44334333333 3456666666666
Q ss_pred CccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 213 TGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 213 ~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++..+ .+..+++|+.|+|++|.++ .++.+.+..+++|+.|++++|++
T Consensus 244 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred eEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 66555 5666777777777777776 56666666666777777777764
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=1.6e-21 Score=154.50 Aligned_cols=160 Identities=23% Similarity=0.274 Sum_probs=127.1
Q ss_pred CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660 62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
|.|.|..+.|. +++++ .+|..+. +.+++|++++|.+.++.+..|..+++|++|++++|.+++..|.
T Consensus 9 C~C~~~~v~c~-----------~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 74 (220)
T 2v9t_B 9 CTCSNNIVDCR-----------GKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74 (220)
T ss_dssp SEEETTEEECT-----------TSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT
T ss_pred CEECCCEEEcC-----------CCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH
Confidence 66677766664 44555 3454443 5788999999998887777888888999999999998887788
Q ss_pred cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCC
Q 042660 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFG 220 (261)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~ 220 (261)
.|.++++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+. +|+.|+|++|.+++.++ .+.
T Consensus 75 ~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~ 149 (220)
T 2v9t_B 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----NLNLLSLYDNKLQTIAKGTFS 149 (220)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTT
T ss_pred HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC-----CCCEEECCCCcCCEECHHHHh
Confidence 888899999999999998877777788889999999999998877777666664 45899999999988777 688
Q ss_pred CCCCCCEEEcccCcCcccCc
Q 042660 221 MLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 221 ~~~~L~~L~L~~n~l~~~~~ 240 (261)
.+++|+.|++++|.+.....
T Consensus 150 ~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCEEEeCCCCcCCCCc
Confidence 88889999999998864433
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.1e-21 Score=172.57 Aligned_cols=110 Identities=23% Similarity=0.160 Sum_probs=76.0
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|.+++..|..+.++++|++|++++|.+....+..|.++++|++|++++|.+++..|..|..+++|+.|+++
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~ 136 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEEC
T ss_pred CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECC
Confidence 44577777777777667777777777777777777776666666777777777777777766666666666777777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (261)
+|.+.+..+..+..+++|+.|++++|.+++
T Consensus 137 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp CTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred CCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 666666666666666666666666666553
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=9.2e-22 Score=171.96 Aligned_cols=177 Identities=23% Similarity=0.180 Sum_probs=137.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 45589999999998888888899999999999999987777778888999999999988876555455555555555555
Q ss_pred c-------------------------CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccC
Q 042660 156 K-------------------------NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDN 210 (261)
Q Consensus 156 ~-------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n 210 (261)
+ |.+.+. | .+..+++|+.|++++|.+++..|..+..+ ++|+.|++++|
T Consensus 180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n 252 (452)
T 3zyi_A 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGL-----SSLKKLWVMNS 252 (452)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTC-----TTCCEEECTTS
T ss_pred CCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCc-----cCCCEEEeCCC
Confidence 4 444332 1 24455566666666666665555555555 46799999999
Q ss_pred ccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 211 GITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 211 ~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
++++..+ .+..+++|+.|+|++|.++ .++.+.+..+++|+.|++++|++
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence 9998878 8999999999999999998 78888888888999999999986
No 45
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=154.42 Aligned_cols=157 Identities=22% Similarity=0.176 Sum_probs=131.3
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
.+++++|.++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45666777774 565543 356899999999997755 45789999999999999999877778999999999999999
Q ss_pred ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~ 236 (261)
.+.+..+..+..+++|++|++++|.+++..|..+..+. +|+.|+|++|++++..| .+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-----SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT-----TCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc-----cCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99988888899999999999999999987787777664 56999999999998877 8889999999999999998
Q ss_pred ccCcHHH
Q 042660 237 GMIPEEL 243 (261)
Q Consensus 237 ~~~~~~~ 243 (261)
+..+..+
T Consensus 167 c~c~l~~ 173 (220)
T 2v70_A 167 CNCYLAW 173 (220)
T ss_dssp CSGGGHH
T ss_pred CCCchHH
Confidence 6665443
No 46
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=5.9e-22 Score=179.05 Aligned_cols=166 Identities=18% Similarity=0.088 Sum_probs=131.7
Q ss_pred cceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcC
Q 042660 66 WTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGF 135 (261)
Q Consensus 66 ~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 135 (261)
+..+.|... .....|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 456777532 2455999999999988899999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660 136 KGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE 215 (261)
Q Consensus 136 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 215 (261)
++..|..|+++++|++|++++|.+.+..+..++.+++|++|++++|.+.+.....+..+ ++|++|++++|.+++.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-----EKLKVLDFQNNAIHYL 168 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC-----TTCCEEECCSSCCCEE
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCC-----cccCEEEcccCccccc
Confidence 98889999999999999999999988878889999999999999999986332222223 3456777776666655
Q ss_pred Cc-cCCCCCCCC--EEEcccCcCc
Q 042660 216 LP-SFGMLPNLK--VLRLGSNQLF 236 (261)
Q Consensus 216 ~~-~~~~~~~L~--~L~L~~n~l~ 236 (261)
.+ .+..+++|+ .|++++|.++
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ChhhhhhhcccceeEEecCCCccC
Confidence 44 455555555 5555555544
No 47
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.4e-22 Score=181.00 Aligned_cols=184 Identities=18% Similarity=0.315 Sum_probs=129.5
Q ss_pred CCeEEEEcCCCCcccc-----------------Cccccc--CCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-
Q 042660 75 SGSVNLSLSGNNFTGR-----------------IVPALG--SISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG- 134 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~- 134 (261)
.....|++++|.+++. +|+.+. ++++|++|++++|.+.+.+|..+.++++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 3556899999999885 888888 89999999999999988899888899999999999998
Q ss_pred CcC-CCCccccCC------CCCCEEEcccCccccccch--hccCCCCCCEEecccCcccccCCccccccccCC-------
Q 042660 135 FKG-GFPGNLRNL------QQLKVLDLRKNKLWGDIGG--IMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA------- 198 (261)
Q Consensus 135 l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~------- 198 (261)
+++ .+|..++.+ ++|++|++++|.+. .+|. .++.+++|++|++++|.++|.+| .+..+..+.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 877 677766665 77777777777776 6666 67777777777777777776666 444333322
Q ss_pred -----------CCC-ccEEEcccCccC-------------------------ccCc-cCC-------CCCCCCEEEcccC
Q 042660 199 -----------NTN-LEVLDLGDNGIT-------------------------GELP-SFG-------MLPNLKVLRLGSN 233 (261)
Q Consensus 199 -----------~~~-L~~L~Ls~n~l~-------------------------~~~~-~~~-------~~~~L~~L~L~~n 233 (261)
.++ |++|++++|.++ +..| .+. ..++|+.|++++|
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 123 455555555444 4333 333 4445666666666
Q ss_pred cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.++ .+|..++..+++|+.|++++|.++
T Consensus 444 ~l~-~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 444 QIS-KFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCC-SCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccC-cCCHHHHccCCCCCEEECCCCCCC
Confidence 666 566666666667777777777653
No 48
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.1e-21 Score=177.24 Aligned_cols=175 Identities=21% Similarity=0.230 Sum_probs=117.1
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
.|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 380 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence 45555555543 33555666666666666666666555 45666677777777777776666666777777777777777
Q ss_pred cccc-ccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcC
Q 042660 158 KLWG-DIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 158 ~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l 235 (261)
.+.+ ..|..++.+++|++|++++|.+++..|..+..+. +|++|++++|++++..| .+..+++|+.|++++|.+
T Consensus 459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc-----cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 7765 3566667777777777777777766666555553 45777777777777666 677777778888888777
Q ss_pred cccCcHHHHhCCC-CccEEEccCccCC
Q 042660 236 FGMIPEELLESVI-PIQELDLSGNGFT 261 (261)
Q Consensus 236 ~~~~~~~~~~~~~-~L~~L~L~~N~ls 261 (261)
+ .+|.. +..++ +|+.|++++|+++
T Consensus 534 ~-~~p~~-~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 534 E-TSKGI-LQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp C-CEESC-GGGSCTTCCEEECCSCCCC
T ss_pred c-ccCHh-HhhhcccCcEEEccCCCcc
Confidence 7 66666 33444 5778888877763
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=2.8e-22 Score=167.06 Aligned_cols=176 Identities=23% Similarity=0.263 Sum_probs=145.5
Q ss_pred CCeEEEEcCCCCccccCcccccCC-----CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC--CCccc--cC
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG--FPGNL--RN 145 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~ 145 (261)
.....|++++|++++. |..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|.+.+. .|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 3566899999999987 7777776 8999999999999998889999999999999999998764 34444 88
Q ss_pred CCCCCEEEcccCcccc---ccchhccCCCCCCEEecccCcccccCCc-cccccccCCCCCccEEEcccCccCccCccCCC
Q 042660 146 LQQLKVLDLRKNKLWG---DIGGIMSELKNVEFVDLSFNRFHGGLGV-GADNVSSIANTNLEVLDLGDNGITGELPSFGM 221 (261)
Q Consensus 146 l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 221 (261)
+++|++|++++|.+.+ .....+..+++|++|++++|.+++..|. .+..+ ++|++|++++|.++..+..+.
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l-----~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP-----SQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC-----TTCCEEECTTSCCSSCCSSCC-
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc-----CCCCEEECCCCccChhhhhcc-
Confidence 9999999999999973 2334557889999999999999876642 22222 577999999999994444554
Q ss_pred CCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 222 LPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 222 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|+.|++++|++++ +|. +..+++|+.|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCC
Confidence 889999999999995 455 667889999999999985
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.9e-21 Score=177.93 Aligned_cols=175 Identities=25% Similarity=0.194 Sum_probs=146.3
Q ss_pred CCCCcceEEcCC----------CCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEcc
Q 042660 62 CPVSWTGVSCDP----------ESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLS 131 (261)
Q Consensus 62 c~~~~~gv~c~~----------~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 131 (261)
|.|.+..+.|.. ......|++++|.+++..+..+.++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 2 C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 2 CTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp --CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred ceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 455566666643 1345689999999998888889999999999999999999999999999999999999
Q ss_pred CCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCc
Q 042660 132 MNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG 211 (261)
Q Consensus 132 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~ 211 (261)
+|.++...+..|+++++|++|++++|.+.+..+..++++++|++|++++|.+++..|..+..+. +|++|++++|.
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~ 156 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNK 156 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSC
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCc
Confidence 9999976566799999999999999999888888999999999999999999887777766654 56999999999
Q ss_pred cCccCc-cC--CCCCCCCEEEcccCcCcccCcH
Q 042660 212 ITGELP-SF--GMLPNLKVLRLGSNQLFGMIPE 241 (261)
Q Consensus 212 l~~~~~-~~--~~~~~L~~L~L~~n~l~~~~~~ 241 (261)
+++..+ .+ ...++|+.|++++|.+++..|.
T Consensus 157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred ccccCHHHhhccccccccEEECCCCcccccChh
Confidence 988776 33 3567899999999999854443
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=6.3e-21 Score=163.52 Aligned_cols=178 Identities=20% Similarity=0.146 Sum_probs=117.5
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+++..|..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 44578888888887777778888888888888888886555556788888888888888887667777888888888888
Q ss_pred cCccccccch-----------------------------------------------------------hccCCCCCCEE
Q 042660 156 KNKLWGDIGG-----------------------------------------------------------IMSELKNVEFV 176 (261)
Q Consensus 156 ~n~l~~~~~~-----------------------------------------------------------~~~~l~~L~~L 176 (261)
+|.+.+.... .+..+++|++|
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L 253 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEE
Confidence 8777543221 23334555666
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 256 (261)
++++|.+++..|..+..+. +|++|++++|++++.+..+..+++|+.|++++|.++ .+|..+ ..+++|+.|+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~L~L~ 326 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLD 326 (390)
T ss_dssp ECCSSCCCEEESGGGTTCS-----SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECC
T ss_pred ECCCCcCCCcChhHccccc-----cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccc-cccCcCCEEECC
Confidence 6666665555454444443 446666666666654334555666666666666666 455443 234556666666
Q ss_pred CccC
Q 042660 257 GNGF 260 (261)
Q Consensus 257 ~N~l 260 (261)
+|++
T Consensus 327 ~N~i 330 (390)
T 3o6n_A 327 HNSI 330 (390)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 6655
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=6.2e-21 Score=172.24 Aligned_cols=178 Identities=20% Similarity=0.146 Sum_probs=129.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+++..|..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 44589999999998888888999999999999999997777777889999999999999988788888889999999998
Q ss_pred cCccccccch-----------------------------------------------------------hccCCCCCCEE
Q 042660 156 KNKLWGDIGG-----------------------------------------------------------IMSELKNVEFV 176 (261)
Q Consensus 156 ~n~l~~~~~~-----------------------------------------------------------~~~~l~~L~~L 176 (261)
+|.+.+.... .+..+++|+.|
T Consensus 180 ~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L 259 (597)
T 3oja_B 180 SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 259 (597)
T ss_dssp TSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEE
Confidence 8887654222 23445566666
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 256 (261)
++++|.+++..|..+..+. +|+.|+|++|.+++.++.+..+++|+.|+|++|.++ .+|..+ ..+++|+.|+++
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~-~~l~~L~~L~L~ 332 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQ-----RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ-PQFDRLENLYLD 332 (597)
T ss_dssp ECCSSCCCEEESGGGTTCS-----SCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGH-HHHTTCSEEECC
T ss_pred ECCCCccCCCCHHHhcCcc-----CCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccc-ccCCCCCEEECC
Confidence 6666666665555555543 447777777777655445566677777777777776 566554 334566666666
Q ss_pred CccC
Q 042660 257 GNGF 260 (261)
Q Consensus 257 ~N~l 260 (261)
+|.+
T Consensus 333 ~N~l 336 (597)
T 3oja_B 333 HNSI 336 (597)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6665
No 53
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.2e-21 Score=175.32 Aligned_cols=175 Identities=23% Similarity=0.244 Sum_probs=89.6
Q ss_pred EEEcCCCCccccC--cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcc-ccCCCCCCEEEcc
Q 042660 79 NLSLSGNNFTGRI--VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGN-LRNLQQLKVLDLR 155 (261)
Q Consensus 79 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~ 155 (261)
+|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|.. +..+++|++|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 5566666555443 445555555555555555555555555555555555555555555433322 4555555555555
Q ss_pred cCccccccchhccCCCCCCEEecccCccc---------------------------ccCCccccccccCCCCCccEEEcc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFH---------------------------GGLGVGADNVSSIANTNLEVLDLG 208 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------------~~~p~~~~~~~~l~~~~L~~L~Ls 208 (261)
+|.+.+..|..+..+++|++|++++|.+. +..|..+..+. +|+.|+++
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls 508 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK-----MMNHVDLS 508 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECC
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-----CCCEEECC
Confidence 55555555555555555555555555554 33333333332 33555555
Q ss_pred cCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 209 DNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 209 ~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+|++++..| .+..++.| .|++++|.+++ ++++.+..+++|+.+++++|++
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCCE
T ss_pred CCccCcCChhHhCccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCCc
Confidence 555554444 44555555 55555555552 3333333344555555555554
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=172.50 Aligned_cols=158 Identities=25% Similarity=0.260 Sum_probs=126.3
Q ss_pred cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcC--CCCccccCCCCCCEEEcccCccccccch-hccCCCC
Q 042660 96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKG--GFPGNLRNLQQLKVLDLRKNKLWGDIGG-IMSELKN 172 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 172 (261)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 567778888888888887778788888888888888888875 4556777888888888888888774554 4777788
Q ss_pred CCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660 173 VEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252 (261)
Q Consensus 173 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 252 (261)
|++|++++|.+++..|..+. ++|+.|++++|+++..++.+..+++|+.|++++|.++ .+|...+..+++|+.
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~-------~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP-------PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC-------TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCEEECcCCCCCcchhhhhc-------ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 88888888888766555432 4679999999999955446678999999999999998 788876777889999
Q ss_pred EEccCccCC
Q 042660 253 LDLSGNGFT 261 (261)
Q Consensus 253 L~L~~N~ls 261 (261)
|++++|+++
T Consensus 473 L~l~~N~~~ 481 (520)
T 2z7x_B 473 IWLHTNPWD 481 (520)
T ss_dssp EECCSSCBC
T ss_pred EECcCCCCc
Confidence 999999874
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.2e-20 Score=172.60 Aligned_cols=183 Identities=23% Similarity=0.302 Sum_probs=99.8
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCEEEccCCc---------------------
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNYLNLSMNG--------------------- 134 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~--------------------- 134 (261)
...|++++|++++..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 3355555555555555555555555555555555543332 334444444444444444
Q ss_pred ---Cc--CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccc---cCCCCCccEEE
Q 042660 135 ---FK--GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVS---SIANTNLEVLD 206 (261)
Q Consensus 135 ---l~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~---~l~~~~L~~L~ 206 (261)
++ +..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+.... ....++|+.|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 33 23455666667777777777777666666667777777777777776643221110000 00113456666
Q ss_pred cccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 207 LGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 207 Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+++|+++..++ .+..+++|+.|++++|.++ .+|...|..+++|+.|++++|++
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcC
Confidence 66666664444 4566666666666666665 45555555555666666666654
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.6e-21 Score=171.90 Aligned_cols=158 Identities=25% Similarity=0.289 Sum_probs=134.2
Q ss_pred cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCC--CCccccCCCCCCEEEcccCccccccc-hhccCCCC
Q 042660 96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGG--FPGNLRNLQQLKVLDLRKNKLWGDIG-GIMSELKN 172 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~ 172 (261)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .|..+..+++|++|++++|.+.+.+| ..+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 5678899999999999988888899999999999999999862 35678899999999999999988444 45888899
Q ss_pred CCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccE
Q 042660 173 VEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQE 252 (261)
Q Consensus 173 L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 252 (261)
|++|++++|.+++..|..+. ++|+.|++++|+++..++.+..+++|+.|++++|+++ .+|...+..+++|+.
T Consensus 430 L~~L~l~~n~l~~~~~~~l~-------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC-------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred CCEEECCCCCCCcchhhhhc-------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 99999999999876655442 3679999999999965556669999999999999999 788876777889999
Q ss_pred EEccCccCC
Q 042660 253 LDLSGNGFT 261 (261)
Q Consensus 253 L~L~~N~ls 261 (261)
|++++|+++
T Consensus 502 L~l~~N~~~ 510 (562)
T 3a79_B 502 IWLHDNPWD 510 (562)
T ss_dssp EECCSCCBC
T ss_pred EEecCCCcC
Confidence 999999874
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=2.4e-21 Score=175.31 Aligned_cols=177 Identities=25% Similarity=0.192 Sum_probs=136.4
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|+|++|+|++..+.+|.++++|++|++++|+|+++.+.+|.++++|++|+|++|++++..+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 45689999999988777889999999999999999988888888999999999999999987666778889999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCC----CCCEEE
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLP----NLKVLR 229 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~----~L~~L~ 229 (261)
+|++++..+..|+++++|++|++++|.+++ ..|..+..+. +|++|++++|++++..+ .+..+. ....++
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----hhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence 999988777788899999999999998865 3455555554 55899999999887666 454333 234677
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
++.|.++ .++...+.. ..+..+++.+|.
T Consensus 208 ls~n~l~-~i~~~~~~~-~~~~~l~l~~n~ 235 (635)
T 4g8a_A 208 LSLNPMN-FIQPGAFKE-IRLHKLTLRNNF 235 (635)
T ss_dssp CTTCCCC-EECTTTTTT-CEEEEEEEESCC
T ss_pred cccCccc-ccCcccccc-hhhhhhhhhccc
Confidence 8888776 444444332 245566666653
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=172.44 Aligned_cols=179 Identities=26% Similarity=0.312 Sum_probs=154.2
Q ss_pred CeEEEEcCCCCccccC--cccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEE
Q 042660 76 GSVNLSLSGNNFTGRI--VPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVL 152 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L 152 (261)
....|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4457888888888653 67788899999999999998865554 8899999999999999987655 568899999999
Q ss_pred EcccCccccccchhccCCCCCCEEecccCccc-ccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEc
Q 042660 153 DLRKNKLWGDIGGIMSELKNVEFVDLSFNRFH-GGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRL 230 (261)
Q Consensus 153 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L 230 (261)
++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+. +|++|++++|++++..| .+..+++|+.|++
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc-----CCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 99999999999999999999999999999997 56787776664 56999999999998877 8899999999999
Q ss_pred ccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 231 GSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 231 ~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|.++ .+++..+..+++|+.|++++|+++
T Consensus 502 ~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 502 ASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcCC-CCCHHHhhcccCCcEEEecCCccc
Confidence 999999 456666677889999999999874
No 59
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.2e-20 Score=148.05 Aligned_cols=166 Identities=22% Similarity=0.224 Sum_probs=138.1
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.++.+++.++. +|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 68888888874 44433 3589999999999998888888999999999999999997667778999999999999999
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFG 237 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~ 237 (261)
+.+..+..+..+++|++|++++|.+++..+..+..+. +|+.|++++|++++.++ .+..+++|+.|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 9988888889999999999999999866665555554 56999999999998777 68889999999999999986
Q ss_pred cCcHHHHhCCCCccEEEccCccC
Q 042660 238 MIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
..+ +|+.|+++.|.+
T Consensus 163 ~~~--------~l~~L~~~~n~~ 177 (208)
T 2o6s_A 163 TCP--------GIRYLSEWINKH 177 (208)
T ss_dssp CTT--------TTHHHHHHHHHC
T ss_pred CCC--------CHHHHHHHHHhC
Confidence 543 445555555443
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=9.1e-22 Score=163.79 Aligned_cols=178 Identities=23% Similarity=0.227 Sum_probs=104.8
Q ss_pred eEEEEcCCCCccccCcccc--cCCCCCCEEECcCCcCcCCCC----ccccCCCCCCEEEccCCcCcCCCCccccCCCCCC
Q 042660 77 SVNLSLSGNNFTGRIVPAL--GSISSLQYLDLSNNKFIGPIP----GRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK 150 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 150 (261)
..+|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4478888888887777776 677777777777777775444 2334566777777777777666666677777777
Q ss_pred EEEcccCccccc--c--chh---------------------------ccCCCCCCEEecccCcccccCCccccccccCCC
Q 042660 151 VLDLRKNKLWGD--I--GGI---------------------------MSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199 (261)
Q Consensus 151 ~L~l~~n~l~~~--~--~~~---------------------------~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 199 (261)
+|++++|++.+. . +.. +..+++|++|++++|.+++..|..+..+...
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~-- 250 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS-- 250 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC--
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc--
Confidence 777777765431 1 111 2334555555555555554444444433211
Q ss_pred CCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|++|++++|+++..+..+. ++|+.|++++|++++ +|. +..+++|+.|++++|+|+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC--TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch--hhhCCCccEEECcCCCCC
Confidence 355666666666663322332 466666666666663 222 234456666666666653
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.3e-20 Score=158.18 Aligned_cols=176 Identities=24% Similarity=0.266 Sum_probs=115.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+++..|..+..+++|++|++++|.+.. +|..+. ++|++|++++|.++...+..+..+++|++|+++
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 45689999999998888999999999999999999884 444333 678888888888876656667788888888888
Q ss_pred cCcccc--ccchhccCC--------------------CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660 156 KNKLWG--DIGGIMSEL--------------------KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT 213 (261)
Q Consensus 156 ~n~l~~--~~~~~~~~l--------------------~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~ 213 (261)
+|.+.. ..+..+..+ ++|++|++++|.+++..+..+..+ ++|+.|++++|.++
T Consensus 156 ~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l-----~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRY-----SKLYRLGLGHNQIR 230 (332)
T ss_dssp SCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTC-----TTCSCCBCCSSCCC
T ss_pred CCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCC-----CCCCEEECCCCcCC
Confidence 887742 444444433 234444444444443333333333 34566666666666
Q ss_pred ccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 214 GELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 214 ~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+..+ .+..+++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l-~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTTG-GGCTTCCEEECCSSCCC
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChhh-hcCccCCEEECCCCCCC
Confidence 6555 5566666666666666666 555543 34556666666666553
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.6e-20 Score=156.15 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=118.3
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcC--CCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIG--PIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (261)
+|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++. +|..+. ++|++|++++
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTT
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCC
Confidence 45555555555445556666777777777776642 555666667777777777777664 444433 6777777777
Q ss_pred CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 236 (261)
|.+.+..+..+..+++|+.|++++|.+++..+..+..+. +|++|++++|+++..+..+..+++|+.|++++|.++
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-----HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST-----TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC-----CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence 777777777788888888888888888766665565553 458888888888744447777888888888888887
Q ss_pred ccCcHHHHhCC------CCccEEEccCccC
Q 042660 237 GMIPEELLESV------IPIQELDLSGNGF 260 (261)
Q Consensus 237 ~~~~~~~~~~~------~~L~~L~L~~N~l 260 (261)
.++...|... ..++.+++++|++
T Consensus 277 -~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 277 -AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp -CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred -ccChhhcCCcccccccccccceEeecCcc
Confidence 4555444322 4677788888775
No 63
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3e-21 Score=160.62 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=123.6
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC---C-CccccCCCCCCEEEccCCcCcCCCCc----cccCCC
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP---I-PGRITDLWGLNYLNLSMNGFKGGFPG----NLRNLQ 147 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l~ 147 (261)
....|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.++. ++. .+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence 556889999999888888888999999999999987642 1 2234678899999999999873 333 246789
Q ss_pred CCCEEEcccCccccccchhccCC---CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCC
Q 042660 148 QLKVLDLRKNKLWGDIGGIMSEL---KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPN 224 (261)
Q Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 224 (261)
+|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|+|++|++++. |.+..+++
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-------~~L~~L~Ls~N~l~~~-~~~~~l~~ 295 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-------AKLRVLDLSSNRLNRA-PQPDELPE 295 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-------SCCSCEECCSCCCCSC-CCTTSCCC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-------CCCCEEECCCCcCCCC-chhhhCCC
Confidence 99999999999998888777776 69999999999998 5565542 4779999999999965 44677899
Q ss_pred CCEEEcccCcCcc
Q 042660 225 LKVLRLGSNQLFG 237 (261)
Q Consensus 225 L~~L~L~~n~l~~ 237 (261)
|+.|++++|.+++
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999974
No 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=2.4e-20 Score=147.74 Aligned_cols=150 Identities=23% Similarity=0.253 Sum_probs=131.0
Q ss_pred CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181 (261)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 181 (261)
+.++.+++.++. +|..+. +++++|++++|.+++..+..|..+++|+.|++++|.+.+..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 578889999884 555443 68999999999999877778999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.+++..+..+..+ ++|+.|+|++|++++..+ .+..+++|+.|+|++|.++ .++...+..+++|+.|++++|++
T Consensus 91 ~l~~l~~~~f~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGL-----FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTC-----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCC-----CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCc
Confidence 9986555555555 456999999999998888 8999999999999999999 67777777788999999999986
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=5.5e-21 Score=168.52 Aligned_cols=180 Identities=24% Similarity=0.277 Sum_probs=90.2
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc---------------
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG--------------- 141 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--------------- 141 (261)
...|++++|.+++..|..+..+++|++|++++|.+.+..| +..+++|++|++++|.+++..+.
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence 3456666666655555555556666666666665554333 44555555554444444321100
Q ss_pred -cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCcccc-ccccC-----------------CCCCc
Q 042660 142 -NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGAD-NVSSI-----------------ANTNL 202 (261)
Q Consensus 142 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l-----------------~~~~L 202 (261)
....+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+..+ ..++|
T Consensus 114 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L 193 (487)
T 3oja_A 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193 (487)
T ss_dssp EEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTC
T ss_pred CCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCC
Confidence 001123444444444444444444444444444444444444443333332 12111 12455
Q ss_pred cEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 203 EVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 203 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+.|+|++|.+++.+|.+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|++
T Consensus 194 ~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCB
T ss_pred CEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchh-hccCCCCCEEEcCCCCC
Confidence 6666666666665555556666666666666666 34443 33445666677766665
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=3.8e-21 Score=160.55 Aligned_cols=175 Identities=25% Similarity=0.255 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc----------------cccCCCCCCEEEccCCcCcCCC
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG----------------RITDLWGLNYLNLSMNGFKGGF 139 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~~~~l~~L~~L~l~~n~l~~~~ 139 (261)
....|++++|.+++..+ +..+++|++|++++|.+.+..+. ....+++|++|++++|.+++..
T Consensus 59 ~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~ 136 (317)
T 3o53_A 59 KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR 136 (317)
T ss_dssp TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence 34466666666654333 55666666666666655432110 0112334455555555555444
Q ss_pred CccccCCCCCCEEEcccCccccccchhc-cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCcc
Q 042660 140 PGNLRNLQQLKVLDLRKNKLWGDIGGIM-SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPS 218 (261)
Q Consensus 140 p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 218 (261)
+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+. . ..++|++|++++|.+++.++.
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~--~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----V--VFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----C--CCTTCCEEECCSSCCCEECGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-----c--ccccCCEEECCCCcCCcchhh
Confidence 4455556666666666666665555544 3566666666666666533111 1 135678888888888876667
Q ss_pred CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|+++
T Consensus 210 ~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCcc
Confidence 777788888888888887 56654 355678888888888763
No 67
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=6.2e-21 Score=177.71 Aligned_cols=181 Identities=19% Similarity=0.250 Sum_probs=118.3
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCc-CcC-CCCccccCC-------CCCCEEEccCCcCcCCCCc--ccc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNK-FIG-PIPGRITDL-------WGLNYLNLSMNGFKGGFPG--NLR 144 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~--~~~ 144 (261)
....|++++|++.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 44577888888777777777777778888887776 666 555544333 36677777777666 4666 666
Q ss_pred CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCcccccccc-CC--------------------CCCcc
Q 042660 145 NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSS-IA--------------------NTNLE 203 (261)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~-l~--------------------~~~L~ 203 (261)
.+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+.. +. .++|+
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence 6666666666666665 444 5566666666666666665 45544444433 21 12367
Q ss_pred EEEcccCccCccCccCC------CCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 204 VLDLGDNGITGELPSFG------MLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 204 ~L~Ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.|++++|.+.+.+|.+. ..++|+.|++++|.++ .+|..++..+++|+.|+|++|+++
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence 77777777766555222 2346778888888887 677777777778888888888764
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=179.00 Aligned_cols=191 Identities=22% Similarity=0.197 Sum_probs=154.4
Q ss_pred CCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCC-CccccCCCCCCEEEccCCcCcCCCCcc
Q 042660 64 VSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPI-PGRITDLWGLNYLNLSMNGFKGGFPGN 142 (261)
Q Consensus 64 ~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~ 142 (261)
+.|..|.+ -......|++++|.+++..+..+.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 36666766 4467779999999999888999999999999999999665554 788999999999999999999888999
Q ss_pred ccCCCCCCEEEcccCccccccchh--ccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc-c
Q 042660 143 LRNLQQLKVLDLRKNKLWGDIGGI--MSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP-S 218 (261)
Q Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~ 218 (261)
|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..+..+. +|++|++++|.+++..+ .
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-----~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-----SLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-----SCCEEEEESSCCCCCCSGG
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-----CCCEEECCCCcCCeeCHHH
Confidence 999999999999999998866654 8899999999999999986544 3555554 56999999999987766 6
Q ss_pred CCCC--CCCCEEEcccCcCcccCcHHHHhC-----CCCccEEEccCccC
Q 042660 219 FGML--PNLKVLRLGSNQLFGMIPEELLES-----VIPIQELDLSGNGF 260 (261)
Q Consensus 219 ~~~~--~~L~~L~L~~n~l~~~~~~~~~~~-----~~~L~~L~L~~N~l 260 (261)
+..+ ++|+.|++++|.+++..|..+... ..+|+.|++++|.+
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 6655 788888888888887666543211 11488888888854
No 69
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=8.3e-21 Score=160.61 Aligned_cols=195 Identities=18% Similarity=0.115 Sum_probs=146.8
Q ss_pred CCCCcceEEcCCC----------CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCC-ccccCCCCCCE-EE
Q 042660 62 CPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIP-GRITDLWGLNY-LN 129 (261)
Q Consensus 62 c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~ 129 (261)
|.|.+..|.|... .+.++|+|++|+|+...+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred cEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 6778999999632 245689999999997666789999999999999999866544 56788888776 56
Q ss_pred ccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc-CcccccCCccccccccCCCCCccEEEcc
Q 042660 130 LSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF-NRFHGGLGVGADNVSSIANTNLEVLDLG 208 (261)
Q Consensus 130 l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~~~l~~~~L~~L~Ls 208 (261)
+..|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+.... ..++.|+++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~----~~l~~L~L~ 162 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS----FESVILWLN 162 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB----SSCEEEECC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcc----hhhhhhccc
Confidence 677889887788899999999999999999877766666667777888765 455433333333332 246788888
Q ss_pred cCccCccCccCCCCCCCCEEEccc-CcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 209 DNGITGELPSFGMLPNLKVLRLGS-NQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 209 ~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|+++..++......+|+.+++.+ |.++ .+|.+.|..+++|+.||+++|+|+
T Consensus 163 ~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC
Confidence 888886655444556788888865 5555 788887777778888888888774
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=169.50 Aligned_cols=177 Identities=25% Similarity=0.195 Sum_probs=154.1
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 45689999999998888899999999999999999998888899999999999999999998778899999999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCC----CEEE
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNL----KVLR 229 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L----~~L~ 229 (261)
+|.+.+..+..++.+++|++|++++|.+.+ .+|..+..+. +|++|++++|.+++..+ .+..+.+| ..++
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccchhhhhcc
Confidence 999988777679999999999999999986 4687777765 56999999999998777 67777777 8999
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
+++|.+++ +++..+... +|+.|++++|.
T Consensus 184 l~~n~l~~-~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 184 LSLNPMNF-IQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CTTCCCCE-ECTTTTTTC-EEEEEEEESCC
T ss_pred cCCCCcee-cCHHHhccC-cceeEeccccc
Confidence 99999985 444555443 79999998873
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.7e-20 Score=149.17 Aligned_cols=172 Identities=19% Similarity=0.198 Sum_probs=147.3
Q ss_pred CeEEEEcCCCC-ccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCC---
Q 042660 76 GSVNLSLSGNN-FTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLK--- 150 (261)
Q Consensus 76 ~~~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~--- 150 (261)
....|++++|. ++...+..+..+++|++|++++ |.+.+..+..|.++++|++|++++|.+++ +|. +..+++|+
T Consensus 56 ~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~ 133 (239)
T 2xwt_C 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFF 133 (239)
T ss_dssp TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEE
T ss_pred CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccccc
Confidence 45689999997 8877777899999999999998 99998888889999999999999999997 676 88889998
Q ss_pred EEEcccC-ccccccchhccCCCCCC-EEecccCcccccCCccccccccCCCCCccEEEcccCc-cCccCc-cCCCC-CCC
Q 042660 151 VLDLRKN-KLWGDIGGIMSELKNVE-FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG-ITGELP-SFGML-PNL 225 (261)
Q Consensus 151 ~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~-~~L 225 (261)
+|++++| .+.+..+..|..+++|+ .|++++|.++ .+|...... .+|++|++++|+ +++.++ .+..+ ++|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-----~~L~~L~L~~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-----TKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-----CEEEEEECTTCTTCCEECTTTTTTCSBCC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-----CCCCEEEcCCCCCcccCCHHHhhccccCC
Confidence 9999999 99888888899999999 9999999998 444332222 367999999995 987777 78888 999
Q ss_pred CEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 226 KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 226 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
+.|++++|.++ .+|.. .+.+|+.|+++++.
T Consensus 208 ~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 208 SLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp SEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred cEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 99999999998 67765 36789999998864
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.6e-20 Score=152.84 Aligned_cols=168 Identities=23% Similarity=0.322 Sum_probs=134.6
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
.....|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 356689999999986444 88899999999999998864 358889999999999999986 333 888999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 234 (261)
++|.+.+..+ +..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l-----~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL-----SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred CCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCC-----CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc
Confidence 9999976654 7888999999999999875322 3333 567999999999986554 6778899999999999
Q ss_pred CcccCcHHHHhCCCCccEEEccCccCC
Q 042660 235 LFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+++ ++. +..+++|+.|++++|+++
T Consensus 207 l~~-~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 207 ISD-VSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCB-CGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCc-ccc--ccCCCCCCEEEccCCeee
Confidence 984 443 566789999999998763
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=9.2e-20 Score=145.20 Aligned_cols=152 Identities=24% Similarity=0.240 Sum_probs=131.2
Q ss_pred CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
.+.++.+++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888887 4554443 7899999999999998899999999999999999999877778889999999999999
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
|.+++..+..+..+. +|+.|++++|+++..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|++
T Consensus 98 N~l~~l~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLV-----HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCCCCCTTTTTTCT-----TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcCCccChhHhCcch-----hhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCc
Confidence 999876666566554 569999999999955448889999999999999998 67777778888999999999987
Q ss_pred C
Q 042660 261 T 261 (261)
Q Consensus 261 s 261 (261)
+
T Consensus 172 ~ 172 (229)
T 3e6j_A 172 D 172 (229)
T ss_dssp C
T ss_pred c
Confidence 4
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=1.4e-19 Score=162.24 Aligned_cols=107 Identities=25% Similarity=0.279 Sum_probs=74.8
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....+|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|.++. +|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEEC
Confidence 355577788887777666777777778888888887777777777777777777777777763 5544 5677777777
Q ss_pred ccCccccc-cchhccCCCCCCEEecccCccc
Q 042660 155 RKNKLWGD-IGGIMSELKNVEFVDLSFNRFH 184 (261)
Q Consensus 155 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 184 (261)
++|.+.+. .|..++++++|++|++++|.++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccc
Confidence 77777653 3466666666666666666543
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.1e-19 Score=149.44 Aligned_cols=167 Identities=26% Similarity=0.375 Sum_probs=141.7
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|+++++.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence 55689999999985 44 68889999999999999997655 8999999999999999986 3 368899999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l 235 (261)
+|.+.+.. .+..+++|++|++++|.+++..+ +..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 116 ~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l-----~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 116 STQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGL-----TNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGC-----TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCC-----CCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence 99997753 38999999999999999975433 3333 567999999999997555 88899999999999999
Q ss_pred cccCcHHHHhCCCCccEEEccCccCC
Q 042660 236 FGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++ ++. +..+++|+.|++++|+++
T Consensus 186 ~~-~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 186 SD-ISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CC-CGG--GGGCTTCCEEECTTSCCC
T ss_pred Cc-Chh--hcCCCCCCEEEccCCccC
Confidence 84 544 566789999999999875
No 76
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=3.3e-20 Score=167.91 Aligned_cols=171 Identities=25% Similarity=0.187 Sum_probs=140.8
Q ss_pred CCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccc
Q 042660 83 SGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGD 162 (261)
Q Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 162 (261)
++.+++ .+|..+. +.+++|++++|+|+++.+.+|.++++|++|++++|.+++..|.+|.++++|++|++++|++.+.
T Consensus 39 ~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 344455 4555442 4799999999999988889999999999999999999987788999999999999999999888
Q ss_pred cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc-Cc-cCCCCCCCCEEEcccCcCcccCc
Q 042660 163 IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE-LP-SFGMLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~ 240 (261)
.+..|.++++|++|++++|.+++..+..++.+. +|++|++++|.+++. .| .+..+++|++|++++|.+++..+
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 888999999999999999999876666666664 569999999999864 45 67889999999999999996555
Q ss_pred HHHH--hCCC-CccEEEccCccCC
Q 042660 241 EELL--ESVI-PIQELDLSGNGFT 261 (261)
Q Consensus 241 ~~~~--~~~~-~L~~L~L~~N~ls 261 (261)
..+. .... ....++++.|+++
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCC
T ss_pred ccccchhhhhhhhhhhhcccCccc
Confidence 4431 2222 4457888888763
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=1.4e-19 Score=149.31 Aligned_cols=166 Identities=23% Similarity=0.304 Sum_probs=137.4
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 445899999998854 3 48889999999999999997655 8899999999999999986 33 48899999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l 235 (261)
+|.+.+. ..+..+++|++|++++|.+++. ..+..+ ++|+.|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l-----~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-----TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGC-----TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccC-----CCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence 9999774 4678899999999999999753 333333 567999999999997666 78899999999999999
Q ss_pred cccCcHHHHhCCCCccEEEccCccC
Q 042660 236 FGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+ .++. +..+++|+.|++++|++
T Consensus 191 ~-~l~~--l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 191 S-DLRA--LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp C-BCGG--GTTCTTCSEEEEEEEEE
T ss_pred C-CChh--hccCCCCCEEECcCCcc
Confidence 8 4553 56778999999999875
No 78
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=144.40 Aligned_cols=151 Identities=26% Similarity=0.266 Sum_probs=129.6
Q ss_pred CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
+.+++++|.++. +|..+. ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999985 565443 457899999999997644 4588999999999999999998888999999999999999
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
|.+++..+..+..+. +|++|+|++|++++..| .+..+++|+.|+|++|.+++ +++..+..+++|+.|++++|+
T Consensus 91 N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcC
Confidence 999877766666664 56999999999999877 89999999999999999995 544556778899999999998
Q ss_pred CC
Q 042660 260 FT 261 (261)
Q Consensus 260 ls 261 (261)
++
T Consensus 165 l~ 166 (220)
T 2v70_A 165 FN 166 (220)
T ss_dssp EE
T ss_pred Cc
Confidence 63
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=8.7e-20 Score=162.92 Aligned_cols=180 Identities=25% Similarity=0.270 Sum_probs=151.9
Q ss_pred CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660 62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
+.|.|.|+ |+ .++++++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|++++..|.
T Consensus 2 ~~C~~~~~-c~---------~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 2 LSCDASGV-CD---------GRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp CEECTTSE-EE---------CTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred ccCCCCce-EE---------CCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 34588887 75 3556676 4565543 7899999999999998899999999999999999999988889
Q ss_pred cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc-cCCccccccccCCCCCccEEEcccCccCc-cCc-c
Q 042660 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG-GLGVGADNVSSIANTNLEVLDLGDNGITG-ELP-S 218 (261)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~-~~~-~ 218 (261)
.|..+++|++|++++|.+.+..+..++.+++|++|++++|.+++ ..|..+..+ ++|++|++++|.+.+ .++ .
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~ 143 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL-----TNLQTLRIGNVETFSEIRRID 143 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC-----TTCCEEEEEESSSCCEECTTT
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc-----CCccEEECCCCccccccCHhh
Confidence 99999999999999999999888889999999999999999985 345555555 466999999998544 444 7
Q ss_pred CCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 219 FGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 219 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+..+++|++|++++|.+++..|..+ ..+.+|+.|++++|.+
T Consensus 144 ~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 144 FAGLTSLNELEIKALSLRNYQSQSL-KSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTT-TTCSEEEEEEEECSBS
T ss_pred hhcccccCeeeccCCcccccChhhh-hccccCceEecccCcc
Confidence 8999999999999999997776554 5577999999999875
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=170.26 Aligned_cols=59 Identities=31% Similarity=0.323 Sum_probs=34.1
Q ss_pred CccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 201 NLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+|+.|++++|.+.+..+ .+..+++|+.|++++|.+++ +++..+..+++|+.|++++|.+
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCC
Confidence 45566666666555544 55666666666666666663 3333344555666666666654
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3e-20 Score=163.82 Aligned_cols=151 Identities=17% Similarity=0.109 Sum_probs=103.6
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc-CCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR-NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++..+ ...+++|+.|
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEE
Confidence 34555666666666665566666666777777777777665565554 56677777777777655522 2346778888
Q ss_pred ecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660 177 DLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256 (261)
Q Consensus 177 ~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 256 (261)
++++|.+++..| .+..+ ++|+.|++++|.+++.++.+..+++|+.|++++|.+....++.++..++.++.++++
T Consensus 197 ~Ls~N~l~~~~~-~~~~l-----~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 197 DLSSNKLAFMGP-EFQSA-----AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECCSSCCCEECG-GGGGG-----TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ECCCCCCCCCCH-hHcCC-----CCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888775433 35444 467999999999997665888899999999999999833444555556667666664
No 82
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=159.27 Aligned_cols=133 Identities=25% Similarity=0.335 Sum_probs=114.2
Q ss_pred cCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcccc--ccchhccCCCCCCEEecccCcccccCCcc-cccccc
Q 042660 120 TDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFHGGLGVG-ADNVSS 196 (261)
Q Consensus 120 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~~~~ 196 (261)
..+++|++|++++|.+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|.+++.+|.. +..+
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l-- 398 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT-- 398 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--
Confidence 578899999999999998889999999999999999999987 56788999999999999999998755543 3333
Q ss_pred CCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 197 IANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 197 l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|++|++++|++++..| .+. ++|+.|++++|.++ .+|..++ .+++|+.|++++|+++
T Consensus 399 ---~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 399 ---KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLK 457 (520)
T ss_dssp ---TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCC
T ss_pred ---ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCC
Confidence 467999999999988776 443 78999999999998 8988876 6789999999999875
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=1.2e-19 Score=141.13 Aligned_cols=150 Identities=19% Similarity=0.264 Sum_probs=69.6
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEe
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 177 (261)
+++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344455555555544 222 34444555555555554331 22444455555555555555444444455555555555
Q ss_pred cccCcccccCCccccccccCCCCCccEEEcccCc-cCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEcc
Q 042660 178 LSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNG-ITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLS 256 (261)
Q Consensus 178 l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~ 256 (261)
+++|.+++..|..+..+ ++|++|++++|. ++ ..+.+..+++|+.|++++|.+++ ++ .+..+++|+.|+++
T Consensus 119 Ls~n~i~~~~~~~l~~l-----~~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTL-----PKVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCSSBCBGGGHHHHTTC-----SSCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEEC
T ss_pred ecCCccCcHhHHHHhhC-----CCCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEee
Confidence 55555544333333332 233555555554 33 23344445555555555555552 32 22334455555555
Q ss_pred CccC
Q 042660 257 GNGF 260 (261)
Q Consensus 257 ~N~l 260 (261)
+|+|
T Consensus 190 ~N~i 193 (197)
T 4ezg_A 190 SQTI 193 (197)
T ss_dssp BC--
T ss_pred Cccc
Confidence 5554
No 84
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.81 E-value=4.2e-20 Score=143.22 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=99.1
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc-cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG-RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
.+++++++++ .+|..+.. ++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3555566665 45554433 788888888888876664 4778888888888888888777888888888888888888
Q ss_pred ccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660 158 KLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP 217 (261)
Q Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 217 (261)
++.+..+..+..+++|++|++++|.+++..|..+..+. +|++|++++|.+++..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----CCCEEEeCCCCccCcCc
Confidence 88888777788888888888888888877777666654 45888888888876544
No 85
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.81 E-value=4.7e-19 Score=149.38 Aligned_cols=165 Identities=25% Similarity=0.345 Sum_probs=98.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
+|++++|.+.+..+ +..+++|+++++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 44444444443221 4444555555555555543322 5556666666666666664322 6666677777777776
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFG 237 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~ 237 (261)
+.+. +.+..+++|++|++++|.+++. ..+..+ ++|+.|++++|.+++..+ .+..+++|+.|++++|.+++
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNL-----SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGC-----TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCC-----CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 6553 3466667777777777766532 122222 456888888888777666 67777788888888888874
Q ss_pred cCcHHHHhCCCCccEEEccCccCC
Q 042660 238 MIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 238 ~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
..| +..+++|+.|++++|+|+
T Consensus 326 ~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG---GGGCTTCSEESSSCC---
T ss_pred ccC---hhhhhccceeehhhhccc
Confidence 433 445677888888888764
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.1e-19 Score=154.28 Aligned_cols=181 Identities=24% Similarity=0.160 Sum_probs=149.4
Q ss_pred CCCCCCCCCCCCcceEEcCCC----------CCeEEEEcCCCCccccCccccc-CCCCCCEEECcCCcCcCCCCccccCC
Q 042660 54 TSLPDTKSCPVSWTGVSCDPE----------SGSVNLSLSGNNFTGRIVPALG-SISSLQYLDLSNNKFIGPIPGRITDL 122 (261)
Q Consensus 54 ~~~~~~~~c~~~~~gv~c~~~----------~~~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l 122 (261)
...|.. |.|.+..+.|... .....|++++|++++..+..+. .+++|++|++++|.|.++.+..|..+
T Consensus 10 ~~Cp~~--C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 10 VSCPAN--CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87 (361)
T ss_dssp TTCCTT--CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CCCCCC--CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC
Confidence 334444 5668888999642 1344899999999988888887 99999999999999998888899999
Q ss_pred CCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCc
Q 042660 123 WGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNL 202 (261)
Q Consensus 123 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L 202 (261)
++|++|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+..... .++|
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~--l~~L 165 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK--LPKL 165 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTC
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc--CCcC
Confidence 99999999999999877788999999999999999999998999999999999999999998543333322122 2577
Q ss_pred cEEEcccCccCccCc-cCCCCCC--CCEEEcccCcCccc
Q 042660 203 EVLDLGDNGITGELP-SFGMLPN--LKVLRLGSNQLFGM 238 (261)
Q Consensus 203 ~~L~Ls~n~l~~~~~-~~~~~~~--L~~L~L~~n~l~~~ 238 (261)
+.|+|++|++++.++ .+..++. ++.|++++|.+...
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 999999999997666 6777776 48899999998743
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.3e-20 Score=154.82 Aligned_cols=168 Identities=20% Similarity=0.194 Sum_probs=140.1
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. + ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEECC
Confidence 45689999999998888899999999999999999987655 88999999999999999853 2 33899999999
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cC-CCCCCCCEEEcccC
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SF-GMLPNLKVLRLGSN 233 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~-~~~~~L~~L~L~~n 233 (261)
+|.+.+..+.. +++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+ .+ ..+++|+.|++++|
T Consensus 108 ~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 108 NNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCR-----SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp SSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGG-----SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCccCCcCccc---cCCCCEEECCCCCCCCccchhhhcc-----CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 99998776543 6789999999999987666666655 466999999999998766 44 46899999999999
Q ss_pred cCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.+++ ++... .+++|+.|++++|+++
T Consensus 180 ~l~~-~~~~~--~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 180 FIYD-VKGQV--VFAKLKTLDLSSNKLA 204 (317)
T ss_dssp CCCE-EECCC--CCTTCCEEECCSSCCC
T ss_pred cCcc-ccccc--ccccCCEEECCCCcCC
Confidence 9984 44333 3679999999999875
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.2e-18 Score=153.86 Aligned_cols=169 Identities=21% Similarity=0.263 Sum_probs=98.8
Q ss_pred CcceE-EcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccc
Q 042660 65 SWTGV-SCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNL 143 (261)
Q Consensus 65 ~~~gv-~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 143 (261)
.|.++ .|.. .+...|++++|++++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +
T Consensus 49 ~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l 118 (571)
T 3cvr_A 49 AVSLLKECLI-NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L 118 (571)
T ss_dssp HHHHHHHHHH-TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C
T ss_pred hhhhcccccc-CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h
Confidence 57776 4542 345566777776665 444332 45666666666655 333 234555555555555554 343 3
Q ss_pred c------------------CCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEE
Q 042660 144 R------------------NLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVL 205 (261)
Q Consensus 144 ~------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L 205 (261)
. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|
T Consensus 119 ~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-------~~L~~L 185 (571)
T 3cvr_A 119 PASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-------ESLEAL 185 (571)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-------TTCCEE
T ss_pred hcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-------CCCCEE
Confidence 3 23444455555554443 222 34455555555555553 333 22 467888
Q ss_pred EcccCccCccCccCCCCCCC-------CEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 206 DLGDNGITGELPSFGMLPNL-------KVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 206 ~Ls~n~l~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+|++|+++..++ +.. +| +.|+|++|.|+ .+|..++. +++|+.|++++|+++
T Consensus 186 ~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 186 DVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLS 243 (571)
T ss_dssp ECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCC
T ss_pred ECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCC
Confidence 888888874444 433 56 88899999888 78887766 788999999999875
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=3.1e-20 Score=157.82 Aligned_cols=183 Identities=23% Similarity=0.229 Sum_probs=78.9
Q ss_pred eEEEEcCCCCccccCcccccCC-----CCCCEEECcCCcCcCCCCccc----cCC-CCCCEEEccCCcCcCCCCccc---
Q 042660 77 SVNLSLSGNNFTGRIVPALGSI-----SSLQYLDLSNNKFIGPIPGRI----TDL-WGLNYLNLSMNGFKGGFPGNL--- 143 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~p~~~--- 143 (261)
..+|++++|.+++..+..+..+ ++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+..+
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 3345555555554444333332 455555555555544333322 222 455555555555544333222
Q ss_pred -cC-CCCCCEEEcccCcccccc----chhccCCC-CCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc-
Q 042660 144 -RN-LQQLKVLDLRKNKLWGDI----GGIMSELK-NVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE- 215 (261)
Q Consensus 144 -~~-l~~L~~L~l~~n~l~~~~----~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~- 215 (261)
.. .++|++|++++|.+.... +..+...+ +|++|++++|.+++..+..+...-....++|++|+|++|.+++.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~ 212 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH
Confidence 12 134555555555554322 22223333 55555555555544333322221110012445555555555541
Q ss_pred ---Cc-cCCC-CCCCCEEEcccCcCcccCcHH---HHhCCCCccEEEccCcc
Q 042660 216 ---LP-SFGM-LPNLKVLRLGSNQLFGMIPEE---LLESVIPIQELDLSGNG 259 (261)
Q Consensus 216 ---~~-~~~~-~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~L~~N~ 259 (261)
++ .+.. .++|+.|++++|.+++..+.. ++..+++|+.|++++|.
T Consensus 213 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 213 YAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 11 2222 235555566555555333322 12333455556555554
No 90
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=2.1e-18 Score=151.22 Aligned_cols=163 Identities=31% Similarity=0.428 Sum_probs=95.6
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.|++++|.+++. +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 444444444432 234455555555555555554333 4555566666666666554322 5556666666666666
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 238 (261)
+.+..+ +..+++|+.|++++|.+++..| +..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+++.
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l-----~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL-----TKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC-----TTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBC
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccC-----ccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCcc
Confidence 655433 5556666666666666654433 2222 4557777777777654 4566677777777777777755
Q ss_pred CcHHHHhCCCCccEEEccCccC
Q 042660 239 IPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 239 ~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.| +..+++|+.|++++|++
T Consensus 369 ~~---~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 369 TP---LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GG---GTTCTTCCEEECCCEEE
T ss_pred ch---hhcCCCCCEEeccCCcc
Confidence 54 45566777788777764
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=3.9e-18 Score=143.73 Aligned_cols=152 Identities=24% Similarity=0.351 Sum_probs=101.1
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660 95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174 (261)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 174 (261)
+..+++|++|++++|.+.+..+ +..+++|+++++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 3444445555555554443222 4445555555555555543222 5666777777777777765544 67777888
Q ss_pred EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254 (261)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (261)
+|++++|.+++. ..+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+++ .+...+..+++|+.|+
T Consensus 247 ~L~l~~n~l~~~--~~~~~l-----~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDL-----TKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLF 317 (347)
T ss_dssp EEECCSSCCCCC--GGGTTC-----TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEE
T ss_pred EEECCCCccCCC--hhHhcC-----CCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEE
Confidence 888888877642 122222 5679999999998864 667788899999999999984 4455567788999999
Q ss_pred ccCccCC
Q 042660 255 LSGNGFT 261 (261)
Q Consensus 255 L~~N~ls 261 (261)
+++|+++
T Consensus 318 L~~n~l~ 324 (347)
T 4fmz_A 318 LSQNHIT 324 (347)
T ss_dssp CCSSSCC
T ss_pred ccCCccc
Confidence 9999874
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=2.1e-18 Score=134.09 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=126.2
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4558999999999 455 68899999999999997763 3478899999999999999998789999999999999999
Q ss_pred cCccccccchhccCCCCCCEEecccCc-ccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNR-FHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 234 (261)
+|.+.+..+..+..+++|++|++++|. ++ .+| .+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l-----~~L~~L~l~~n~i~~~-~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTL-----PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGC-----SSCCEEECTTBCCCCC-TTGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCC-----CCCCEEECCCCCCcCh-HHhccCCCCCEEEeeCcc
Confidence 999999889999999999999999998 54 343 34444 5679999999999864 477788999999999999
Q ss_pred Ccc
Q 042660 235 LFG 237 (261)
Q Consensus 235 l~~ 237 (261)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 863
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.7e-18 Score=154.61 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=92.5
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999997 66554 378999999999999 477 457899999999999987 555 554 88999999
Q ss_pred cCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
+|.+++ +|. . .++|+.|++++|.+++.++ .+++|+.|++++|.+++ +|. + . .+|+.|++++|.
T Consensus 129 ~N~l~~-lp~---~-----l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l-~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NNQLTM-LPE---L-----PALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-L-P--ESLEALDVSTNL 191 (571)
T ss_dssp SSCCSC-CCC---C-----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-C-C--TTCCEEECCSSC
T ss_pred CCcCCC-CCC---c-----CccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-h-h--CCCCEEECcCCC
Confidence 998876 444 1 1345666666666664322 34455666666665553 444 2 1 455555555555
Q ss_pred C
Q 042660 260 F 260 (261)
Q Consensus 260 l 260 (261)
|
T Consensus 192 L 192 (571)
T 3cvr_A 192 L 192 (571)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=7.8e-19 Score=142.70 Aligned_cols=145 Identities=26% Similarity=0.319 Sum_probs=94.5
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|+++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ +|... . ++|+.|+++
T Consensus 42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 34467777777764 33 56667777777777777775544 6677777777777777765 33322 2 677777777
Q ss_pred cCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcC
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l 235 (261)
+|.+++. +.+..+++|+.|++++|.+++. + .+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+
T Consensus 115 ~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l-----~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 115 NNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFL-----SKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp SSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGC-----TTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred CCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccC-----CCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 7777653 2466777777777777777643 1 23333 4557777777777755 5566677777777777777
Q ss_pred cc
Q 042660 236 FG 237 (261)
Q Consensus 236 ~~ 237 (261)
++
T Consensus 185 ~~ 186 (263)
T 1xeu_A 185 VN 186 (263)
T ss_dssp EC
T ss_pred cC
Confidence 63
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3.4e-18 Score=154.05 Aligned_cols=165 Identities=24% Similarity=0.314 Sum_probs=114.7
Q ss_pred eEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEccc
Q 042660 77 SVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRK 156 (261)
Q Consensus 77 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 156 (261)
...|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|+|++|.+++ +| .+..+++|+.|++++
T Consensus 45 L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 45 IDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp CCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecC
Confidence 34567777777643 2 46777788888888888776554 6777788888888887775 33 577777888888888
Q ss_pred CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 236 (261)
|.+.+. ..+..+++|+.|++++|.+++. ..+..+ ++|+.|+|++|.+.+.+| +..+++|+.|+|++|.|+
T Consensus 119 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-----~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 119 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRL-----TKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSC-----TTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCCC--ccccCCCccCEEECCCCccCCc--hhhccc-----CCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC
Confidence 877653 3467777888888888877643 223333 456888888888776656 667777888888888777
Q ss_pred ccCcHHHHhCCCCccEEEccCccC
Q 042660 237 GMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+ ++ .+..+++|+.|+|++|++
T Consensus 189 ~-l~--~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 189 D-LR--ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp B-CG--GGTTCTTCSEEECCSEEE
T ss_pred C-Ch--HHccCCCCCEEEccCCcC
Confidence 4 43 245567788888887765
No 96
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=1.1e-17 Score=146.77 Aligned_cols=149 Identities=25% Similarity=0.292 Sum_probs=85.7
Q ss_pred cCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCE
Q 042660 96 GSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEF 175 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 175 (261)
..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.
T Consensus 218 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 291 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTN 291 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence 3344444444444444432 234455555555555555554322 5555666666666666554433 555666666
Q ss_pred EecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEc
Q 042660 176 VDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDL 255 (261)
Q Consensus 176 L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L 255 (261)
|++++|.+.+..+ +..+ ++|+.|++++|.+++..| +..+++|+.|++++|.+++ ++ .+..+++|+.|++
T Consensus 292 L~L~~n~l~~~~~--~~~l-----~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l 360 (466)
T 1o6v_A 292 LELNENQLEDISP--ISNL-----KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD-VS--SLANLTNINWLSA 360 (466)
T ss_dssp EECCSSCCSCCGG--GGGC-----TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEEC
T ss_pred EEcCCCcccCchh--hcCC-----CCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC-ch--hhccCCCCCEEeC
Confidence 6666666654322 2222 456777777777776555 5567777777777777774 32 2455677888888
Q ss_pred cCccCC
Q 042660 256 SGNGFT 261 (261)
Q Consensus 256 ~~N~ls 261 (261)
++|+++
T Consensus 361 ~~n~l~ 366 (466)
T 1o6v_A 361 GHNQIS 366 (466)
T ss_dssp CSSCCC
T ss_pred CCCccC
Confidence 887764
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.2e-20 Score=158.96 Aligned_cols=182 Identities=21% Similarity=0.249 Sum_probs=137.3
Q ss_pred CCeEEEEcCCCCccc----cCcccccCCCCCCEEECcCCcCcCCCCccc----cCC---------CCCCEEEccCCcCc-
Q 042660 75 SGSVNLSLSGNNFTG----RIVPALGSISSLQYLDLSNNKFIGPIPGRI----TDL---------WGLNYLNLSMNGFK- 136 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~n~l~- 136 (261)
.....|++++|.+++ .++..+..+++|++|++++|.+....+..+ ..+ ++|++|++++|+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 355688888888887 466777888888888888888864433333 333 78899999998887
Q ss_pred CCCC---ccccCCCCCCEEEcccCcccc-----ccchhccCCCCCCEEecccCccc----ccCCccccccccCCCCCccE
Q 042660 137 GGFP---GNLRNLQQLKVLDLRKNKLWG-----DIGGIMSELKNVEFVDLSFNRFH----GGLGVGADNVSSIANTNLEV 204 (261)
Q Consensus 137 ~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~~~l~~~~L~~ 204 (261)
...+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++ +.+|..+..+ ++|+.
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~-----~~L~~ 248 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW-----PNLRE 248 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC-----TTCCE
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC-----CCcCE
Confidence 3344 456678889999999998863 34447788899999999999986 4455545444 45699
Q ss_pred EEcccCccCcc----Cc-cC--CCCCCCCEEEcccCcCcc----cCcHHHHhCCCCccEEEccCccCC
Q 042660 205 LDLGDNGITGE----LP-SF--GMLPNLKVLRLGSNQLFG----MIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 205 L~Ls~n~l~~~----~~-~~--~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|+|++|.+++. ++ .+ +.+++|+.|+|++|.+++ .+|..++..+++|+.|++++|+++
T Consensus 249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99999999864 33 44 448899999999999986 477777666789999999999875
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.3e-19 Score=153.97 Aligned_cols=186 Identities=20% Similarity=0.149 Sum_probs=142.2
Q ss_pred CeEEEEcCCCCccccCc----ccccCCC-CCCEEECcCCcCcCCCCccccCC-----CCCCEEEccCCcCcCCCCccc--
Q 042660 76 GSVNLSLSGNNFTGRIV----PALGSIS-SLQYLDLSNNKFIGPIPGRITDL-----WGLNYLNLSMNGFKGGFPGNL-- 143 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~-- 143 (261)
...+|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 46799999999998766 7788888 89999999999998777777664 899999999999987666544
Q ss_pred --cCC-CCCCEEEcccCccccccchhc----cC-CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660 144 --RNL-QQLKVLDLRKNKLWGDIGGIM----SE-LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE 215 (261)
Q Consensus 144 --~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 215 (261)
... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+..+...-.-..++|++|+|++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 344 899999999999987766554 34 3699999999999986444333222111123789999999999876
Q ss_pred Cc-c----CCCC-CCCCEEEcccCcCccc----CcHHHHhCCCCccEEEccCccCC
Q 042660 216 LP-S----FGML-PNLKVLRLGSNQLFGM----IPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 216 ~~-~----~~~~-~~L~~L~L~~n~l~~~----~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.+ . +... ++|+.|+|++|.+++. ++..+....++|+.|++++|+++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 65 3 3344 5899999999999854 34444443458999999999874
No 99
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.5e-17 Score=128.70 Aligned_cols=134 Identities=23% Similarity=0.196 Sum_probs=117.0
Q ss_pred CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc-cccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG-NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
+.+++++|.+. .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 56655533 899999999999976554 488999999999999999999999999999999999999
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHH
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEEL 243 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~ 243 (261)
|.+++..+..+..+. +|++|+|++|++++..| .+..+++|+.|++++|.+++..+..+
T Consensus 88 N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 88 NKIKEISNKMFLGLH-----QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCCCEECSSSSTTCT-----TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred CcCCccCHHHhcCCC-----CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 999988777776664 56999999999999888 88999999999999999997766544
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2.1e-19 Score=165.40 Aligned_cols=202 Identities=22% Similarity=0.142 Sum_probs=94.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCCCCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCC--
Q 042660 25 SESELGSLIEFKKGIQDDPLGRIHSTWNITSLPDTKSCPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQ-- 102 (261)
Q Consensus 25 ~~~~~~~l~~~~~~~~~~p~~~~~~~w~~~~~~~~~~c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~-- 102 (261)
.+.+..++.+++.+....... ....|.... .. ...|.++.+.. ..++.+++.++.+... +..+.....|+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~---~~--~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTA-KKQQPTGDS---TP--SGTATNSAVST-PLTPKIELFANGKDEA-NQALLQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTT-C---------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCc-ccCCCcCCC---Cc--cccCCCceecC-CccceEEeeCCCCCcc-hhhHhhcCccCcc
Confidence 457788888888776322222 133454322 11 12677766654 3455677777776642 32222222222
Q ss_pred ---EEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 103 ---YLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 103 ---~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
.+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|+
T Consensus 202 ~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls 278 (727)
T 4b8c_D 202 SIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278 (727)
T ss_dssp ---------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECT
T ss_pred cccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCc
Confidence 2223333333 44566677777777777777777 46666667777777777777776 666777777777777777
Q ss_pred cCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHH
Q 042660 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEEL 243 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 243 (261)
+|.++ .+|..+..+. +|++|+|++|.++..+..++.+++|+.|+|++|.|++.+|..+
T Consensus 279 ~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCF-----QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TSCCS-SCCSSGGGGT-----TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCcCC-ccChhhcCCC-----CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 77776 5666666654 4477777777776443367777777777777777776555443
No 101
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=2.1e-17 Score=126.17 Aligned_cols=136 Identities=26% Similarity=0.297 Sum_probs=93.6
Q ss_pred CCCCcceEEcCCCCCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660 62 CPVSWTGVSCDPESGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 62 c~~~~~gv~c~~~~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
|.|.|.++.|.. ++++. +|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+.
T Consensus 5 C~C~~~~l~~~~-----------~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 70 (177)
T 2o6r_A 5 CSCSGTEIRCNS-----------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70 (177)
T ss_dssp CEEETTEEECCS-----------SCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred CEeCCCEEEecC-----------CCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh
Confidence 666888877753 44442 33322 25788888888888877777778888888888888888866666
Q ss_pred cccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 142 NLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+ ++|++|++++|.+.+..
T Consensus 71 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 71 VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCCH
T ss_pred HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCC-----cccCEEEecCCCeeccC
Confidence 67788888888888888877666667777777777777777764333333333 24466666666666543
No 102
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=6.4e-17 Score=141.45 Aligned_cols=162 Identities=25% Similarity=0.252 Sum_probs=83.9
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|++++. + +..+++|++|++++|.+++. + +..+++|++|++++|.+++ +| ++.+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 344566666666653 2 55556666666666666543 2 5555566666666665554 22 4555555555555
Q ss_pred cCccccccc-------------------hhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 156 KNKLWGDIG-------------------GIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 156 ~n~l~~~~~-------------------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
+|.+++... -.+..+++|++|++++|.+++ +| +..+ ++|+.|++++|.+++.
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l-----~~L~~L~l~~N~l~~~- 206 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQN-----KLLNRLNCDTNNITKL- 206 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTC-----TTCCEEECCSSCCSCC-
T ss_pred CCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccC-----CCCCEEECcCCcCCee-
Confidence 555544210 013344555555555555543 11 2222 3445555555555543
Q ss_pred ccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 217 PSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 217 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
.+..+++|+.|++++|.+++ +| +..+++|+.|++++|++
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred -ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence 24455566666666666653 44 33445666666666654
No 103
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=8e-17 Score=140.83 Aligned_cols=167 Identities=20% Similarity=0.204 Sum_probs=127.4
Q ss_pred CCeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 75 SGSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 75 ~~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
.....|++++|.+++. | .+..+++|++|++++|.+++. | +..+++|++|++++|.+++. + ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3556899999999974 4 689999999999999999975 3 88999999999999999974 4 889999999999
Q ss_pred ccCccccccchhccCCCCCCEEecccCcccccCCccccccccC-----------------CCCCccEEEcccCccCccCc
Q 042660 155 RKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI-----------------ANTNLEVLDLGDNGITGELP 217 (261)
Q Consensus 155 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l-----------------~~~~L~~L~Ls~n~l~~~~~ 217 (261)
++|.+.+. + ++.+++|++|++++|.+++. + +..+..+ ..++|++|++++|++++. |
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l-~ 186 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL-D 186 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC-C
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee-c
Confidence 99999874 3 88999999999999999863 2 2222211 124566666666666653 3
Q ss_pred cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 218 SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 218 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
+..+++|+.|++++|.+++ ++ +..+++|+.|++++|+++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCS
T ss_pred -cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccc
Confidence 5566677777777777764 32 344567777777777764
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2e-17 Score=136.38 Aligned_cols=162 Identities=27% Similarity=0.295 Sum_probs=131.6
Q ss_pred EcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccc
Q 042660 81 SLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLW 160 (261)
Q Consensus 81 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 160 (261)
.+..+.+.+.. .+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 30 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 34445554332 244678899999999999865 3 47889999999999999997444 899999999999999997
Q ss_pred cccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCc
Q 042660 161 GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 161 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 240 (261)
+. ..+..+++|++|++++|.+++. ..+..+ ++|+.|++++|++++. +.+..+++|+.|++++|.+++ ++
T Consensus 104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l-----~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~ 172 (291)
T 1h6t_A 104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHL-----PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IV 172 (291)
T ss_dssp CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGC-----TTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CG
T ss_pred CC--hhhccCCCCCEEECCCCcCCCC--hhhcCC-----CCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-ch
Confidence 63 3489999999999999999753 233333 5679999999999965 778889999999999999985 44
Q ss_pred HHHHhCCCCccEEEccCccCC
Q 042660 241 EELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 241 ~~~~~~~~~L~~L~L~~N~ls 261 (261)
. +..+++|+.|++++|.++
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCC
T ss_pred h--hcCCCccCEEECCCCcCC
Confidence 4 667889999999999875
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=8.6e-18 Score=127.21 Aligned_cols=135 Identities=27% Similarity=0.329 Sum_probs=92.5
Q ss_pred CCCCCEEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEE
Q 042660 98 ISSLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFV 176 (261)
Q Consensus 98 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 176 (261)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777788777776 56666677777777788877777754 667777777788887777777667766667777777
Q ss_pred ecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcccCcCcccCc
Q 042660 177 DLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 177 ~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~~n~l~~~~~ 240 (261)
++++|.+++..+ ..+..+ ++|+.|++++|.+++.++ .+..+++|+.|++++|.+. .+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKL-----ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSC-----SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred eccCCccCcchhHHHHhcC-----CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 777777764211 233333 355777777777776555 4666777777777777765 444
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=7.3e-19 Score=147.49 Aligned_cols=174 Identities=22% Similarity=0.221 Sum_probs=81.0
Q ss_pred EEEcCCCCcccc-CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCC-cCcC-CCCccccCCCCCCEEEcc
Q 042660 79 NLSLSGNNFTGR-IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMN-GFKG-GFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 79 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~p~~~~~l~~L~~L~l~ 155 (261)
+|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++ .++..+..+++|++|+++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 444444444433 3444444445555555555444444444444455555555554 3332 133334444455555555
Q ss_pred cC-ccccc-cchhccCCC-CCCEEecccC--ccc-ccCCccccccccCCCCCccEEEcccCc-cCccCc-cCCCCCCCCE
Q 042660 156 KN-KLWGD-IGGIMSELK-NVEFVDLSFN--RFH-GGLGVGADNVSSIANTNLEVLDLGDNG-ITGELP-SFGMLPNLKV 227 (261)
Q Consensus 156 ~n-~l~~~-~~~~~~~l~-~L~~L~l~~n--~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~ 227 (261)
+| .+++. ++..+..++ +|++|++++| .++ +.++..+..+ ++|+.|++++|. +++..+ .+..+++|+.
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-----PNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-----TTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-----CCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 55 44332 334444444 5555555555 222 1222222222 345666666666 443333 5555666666
Q ss_pred EEcccCc-CcccCcHHHHhCCCCccEEEccCc
Q 042660 228 LRLGSNQ-LFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 228 L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
|++++|. ++.... ..+..+++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETL-LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGG-GGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc
Confidence 6666663 221111 12334556666666665
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=6.2e-19 Score=147.93 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=142.0
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455888999988876655 55789999999999998765 7777889999999999999998778888889999999999
Q ss_pred ccC-ccccc-cchhccCCCCCCEEecccC-ccccc-CCccccccccCCCCCccEEEcccC--ccC-ccCc-cCCCCCCCC
Q 042660 155 RKN-KLWGD-IGGIMSELKNVEFVDLSFN-RFHGG-LGVGADNVSSIANTNLEVLDLGDN--GIT-GELP-SFGMLPNLK 226 (261)
Q Consensus 155 ~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~~~l~~~~L~~L~Ls~n--~l~-~~~~-~~~~~~~L~ 226 (261)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ .+|++|++++| .++ +..+ .+..+++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~ 225 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----ETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 225 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----TTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----cCCCEEEeCCCcccCCHHHHHHHHhhCCCCC
Confidence 999 67653 6777888999999999999 88753 344444443 16799999999 455 3444 667789999
Q ss_pred EEEcccCc-CcccCcHHHHhCCCCccEEEccCcc
Q 042660 227 VLRLGSNQ-LFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 227 ~L~L~~n~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
.|++++|. +++..+..+ ..+++|+.|++++|.
T Consensus 226 ~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 226 HLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCY 258 (336)
T ss_dssp EEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCT
T ss_pred EEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCC
Confidence 99999999 776666554 556899999999983
No 108
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=126.06 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=92.8
Q ss_pred EEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 80 LSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 80 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
+++++++++ .+|..+. +.+++|++++|.+. .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 445556666 3454432 47888888888887 5667788888888888888888877777788888888888888888
Q ss_pred ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCc
Q 042660 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITG 214 (261)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~ 214 (261)
++..+..|..+++|++|++++|.+++..+..+..+. +|+.|++++|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-----ALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT-----TCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc-----cccEEEeCCCCeec
Confidence 887777788888888888888888755444455443 45788888887754
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.73 E-value=6.9e-19 Score=150.64 Aligned_cols=181 Identities=24% Similarity=0.228 Sum_probs=114.2
Q ss_pred CeEEEEcCCCC---ccccCcccc-------cCCCCCCEEECcCCcCcC----CCCccccCCCCCCEEEccCCcCcCCCCc
Q 042660 76 GSVNLSLSGNN---FTGRIVPAL-------GSISSLQYLDLSNNKFIG----PIPGRITDLWGLNYLNLSMNGFKGGFPG 141 (261)
Q Consensus 76 ~~~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 141 (261)
....|++++|. +.+.+|..+ ..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 44567777643 334444443 566777777777777765 3555666677777777777777543333
Q ss_pred ccc----CC---------CCCCEEEcccCccc-cccc---hhccCCCCCCEEecccCccccc-----CCccccccccCCC
Q 042660 142 NLR----NL---------QQLKVLDLRKNKLW-GDIG---GIMSELKNVEFVDLSFNRFHGG-----LGVGADNVSSIAN 199 (261)
Q Consensus 142 ~~~----~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~~~~l~~ 199 (261)
.+. .+ ++|++|++++|.+. ...+ ..+..+++|++|++++|.++.. .+..+..+
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~----- 215 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC----- 215 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-----
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-----
Confidence 232 22 67777777777775 2333 3555677788888887777521 12133333
Q ss_pred CCccEEEcccCccC----ccCc-cCCCCCCCCEEEcccCcCcccC----cHHHH-hCCCCccEEEccCccCC
Q 042660 200 TNLEVLDLGDNGIT----GELP-SFGMLPNLKVLRLGSNQLFGMI----PEELL-ESVIPIQELDLSGNGFT 261 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~----~~~~-~~~~~~~L~~L~L~~n~l~~~~----~~~~~-~~~~~L~~L~L~~N~ls 261 (261)
++|+.|+|++|.++ +.+| .+..+++|+.|+|++|.+++.. +..+. ..+++|+.|++++|.++
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 46688888888885 3444 6777888888888888887542 22221 12568888888888764
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=2.7e-17 Score=124.44 Aligned_cols=133 Identities=22% Similarity=0.224 Sum_probs=115.0
Q ss_pred CCCCCCEEEccCCcCc-CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCC
Q 042660 121 DLWGLNYLNLSMNGFK-GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIAN 199 (261)
Q Consensus 121 ~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~ 199 (261)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---- 95 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP---- 95 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT----
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC----
Confidence 3478999999999998 67888889999999999999999776 7789999999999999999877776655554
Q ss_pred CCccEEEcccCccCccC--ccCCCCCCCCEEEcccCcCcccCcH---HHHhCCCCccEEEccCccCC
Q 042660 200 TNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLGSNQLFGMIPE---ELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~L~~L~L~~N~ls 261 (261)
+|+.|++++|.+++.+ +.+..+++|+.|++++|.+++ ++. ..+..+++|+.|++++|.++
T Consensus 96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChh
Confidence 5699999999999864 478899999999999999994 554 56778899999999999763
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=8e-17 Score=145.10 Aligned_cols=164 Identities=27% Similarity=0.310 Sum_probs=134.3
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.+.+..+.+.+..+ +..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..| +..+++|+.|++++|.
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC
Confidence 34455555554333 45788999999999999854 3 58899999999999999997544 8899999999999999
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 238 (261)
+.+. ..+..+++|+.|++++|.+.+. ..+..+ ++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++.
T Consensus 99 l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-----~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 99 IKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHL-----PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGC-----TTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCC--hhhccCCCCCEEEecCCCCCCC--ccccCC-----CccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence 9763 3688999999999999999752 233333 5779999999999966 7788899999999999999964
Q ss_pred CcHHHHhCCCCccEEEccCccCC
Q 042660 239 IPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 239 ~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
.| +..+++|+.|+|++|+|+
T Consensus 169 ~~---l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 169 VP---LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GG---GTTCTTCCEEECCSSCCC
T ss_pred hh---hccCCCCCEEECcCCCCC
Confidence 44 667889999999999875
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.6e-16 Score=121.11 Aligned_cols=130 Identities=25% Similarity=0.305 Sum_probs=113.1
Q ss_pred CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181 (261)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 181 (261)
+.+++++|.+. .+|..+. +++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57899999998 4555443 58999999999998 57889999999999999999999998899999999999999999
Q ss_pred cccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCc
Q 042660 182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~ 240 (261)
.+++..|..+..+. +|+.|+|++|.+++.++ .+..+++|+.|++++|.+.....
T Consensus 89 ~l~~i~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLK-----SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCT-----TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCC-----CCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99987777777664 56999999999998777 68899999999999999875443
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=3.5e-17 Score=121.34 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=66.0
Q ss_pred CCCCEEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEe
Q 042660 99 SSLQYLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVD 177 (261)
Q Consensus 99 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 177 (261)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555556555555 44555555555555555555555543 4445555555555555555444444444444444444
Q ss_pred cccCcccccCCccccccccCCCCCccEEEcccCccCccC--ccCCCCCCCCEEEcccCcCcccCc--HHHHhCCCCccEE
Q 042660 178 LSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL--PSFGMLPNLKVLRLGSNQLFGMIP--EELLESVIPIQEL 253 (261)
Q Consensus 178 l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L 253 (261)
+ ++|.+++.+ ..+..+++|+.|++++|.+++..+ ...+..+++|+.|
T Consensus 95 l-----------------------------s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 95 L-----------------------------SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp C-----------------------------TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred C-----------------------------CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 4 444444321 244555666666666666653322 1344555666666
Q ss_pred Ecc
Q 042660 254 DLS 256 (261)
Q Consensus 254 ~L~ 256 (261)
|++
T Consensus 146 ~l~ 148 (149)
T 2je0_A 146 DGY 148 (149)
T ss_dssp TTB
T ss_pred cCC
Confidence 665
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=4.4e-16 Score=118.77 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=112.2
Q ss_pred CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
.+.++++++.+.. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5788999999884 44433 36899999999999987777789999999999999999888888889999999999999
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCc
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIP 240 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~ 240 (261)
|.+++..+..+..+. +|++|++++|++++.++ .+..+++|+.|++++|.+++..+
T Consensus 86 N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLT-----QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCc-----ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999876665555554 56999999999997777 57889999999999999987655
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=5.3e-17 Score=120.36 Aligned_cols=108 Identities=25% Similarity=0.349 Sum_probs=73.0
Q ss_pred CCCCEEEcccCccc-cccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCC
Q 042660 147 QQLKVLDLRKNKLW-GDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPN 224 (261)
Q Consensus 147 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~ 224 (261)
++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+ ++|++|++++|.+++.+| .+..+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l-----~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKL-----NKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCC-----TTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcC-----CCCCEEECCCCcccchHHHHhhhCCC
Confidence 44555566666554 45555555566666666666666533 223332 456888888888877566 5666899
Q ss_pred CCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 225 LKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 225 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
|+.|++++|.+++......+..+++|+.|++++|+++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 9999999999985222355677889999999999874
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=1e-15 Score=133.63 Aligned_cols=120 Identities=24% Similarity=0.308 Sum_probs=63.6
Q ss_pred CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEec
Q 042660 99 SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDL 178 (261)
Q Consensus 99 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 178 (261)
++|++|++++|.+.+ +| .+.++++|++|++++|.+++ +|..+ .+|++|++++|.+.+ +| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356666666666654 44 35666666666666666654 34322 356666666666654 33 3556666666666
Q ss_pred ccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCc
Q 042660 179 SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 179 ~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 236 (261)
++|.+++ +|... .+|++|++++|.++ .+|.++.+++|+.|++++|.++
T Consensus 203 ~~N~l~~-l~~~~--------~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 203 DNNSLKK-LPDLP--------LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSS-CCCCC--------TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCCc--------CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC
Confidence 6666553 22211 23455555555555 3334445555555555555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.7e-16 Score=125.75 Aligned_cols=162 Identities=23% Similarity=0.317 Sum_probs=117.5
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.++++++.+++.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 4566677776433 46677888888888888874 34 57778888888888888886433 7888888888888888
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCccCCCCCCCCEEEcccCcCccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 238 (261)
+.+. +.. .. ++|++|++++|.+++. + .+..+ ++|+.|++++|++++. +.+..+++|+.|++++|.+++.
T Consensus 97 l~~l-~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l-----~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 97 LKNL-NGI-PS-ACLSRLFLDNNELRDT-D-SLIHL-----KNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSCC-TTC-CC-SSCCEEECCSSCCSBS-G-GGTTC-----TTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC
T ss_pred cCCc-Ccc-cc-CcccEEEccCCccCCC-h-hhcCc-----ccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch
Confidence 8663 322 22 7888888888888742 1 23333 4668888888888865 4667788888888888888754
Q ss_pred CcHHHHhCCCCccEEEccCccC
Q 042660 239 IPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 239 ~~~~~~~~~~~L~~L~L~~N~l 260 (261)
..+..+++|+.|++++|++
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEE
T ss_pred ---HHhccCCCCCEEeCCCCcc
Confidence 3345667888888888865
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=8.7e-16 Score=134.14 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=70.9
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
...+|++++|++++ +| .+..+++|++|++++|++++ +|.. ..+|++|++++|.+++ +| .++.+++|++|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 55688999999986 66 58999999999999999986 4443 3478888888888886 55 57788888888888
Q ss_pred cCccccccchhccCCCCCCEEecccCccc
Q 042660 156 KNKLWGDIGGIMSELKNVEFVDLSFNRFH 184 (261)
Q Consensus 156 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (261)
+|.+.+ +|.. .++|++|++++|.+.
T Consensus 204 ~N~l~~-l~~~---~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 204 NNSLKK-LPDL---PLSLESIVAGNNILE 228 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCS
T ss_pred CCcCCc-CCCC---cCcccEEECcCCcCC
Confidence 887765 2221 135666666666554
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.7e-15 Score=136.77 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=38.6
Q ss_pred CCccEEEcccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 200 TNLEVLDLGDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|+.|++++|.+++.++ .+++|+.|++++|.|+ .+|.. +..+++|+.|++++|+++
T Consensus 241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCSCCCC
T ss_pred CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecCCCCC
Confidence 345666666666653322 4567888888888887 67765 455678888888888874
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=7.8e-18 Score=154.95 Aligned_cols=118 Identities=24% Similarity=0.251 Sum_probs=78.9
Q ss_pred CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCC
Q 042660 91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSEL 170 (261)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 170 (261)
.+..+..+..|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3556667777777777777776 45555557777777777777777 56777777777777777777776 557777777
Q ss_pred CCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc
Q 042660 171 KNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP 217 (261)
Q Consensus 171 ~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 217 (261)
++|++|+|++|.++ .+|..+..+. +|+.|+|++|.+++.+|
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLC-----NLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCT-----TCCCEECTTSCCCSHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCC-----CccEEeCCCCccCCCCh
Confidence 77777777777775 5565555553 44777777777776555
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=6.4e-18 Score=147.64 Aligned_cols=59 Identities=24% Similarity=0.228 Sum_probs=28.6
Q ss_pred CccEEEcccCccCccCc-cCC-----CCCCCCEEEcccCcCcc----cCcHHHHhCCCCccEEEccCccC
Q 042660 201 NLEVLDLGDNGITGELP-SFG-----MLPNLKVLRLGSNQLFG----MIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 201 ~L~~L~Ls~n~l~~~~~-~~~-----~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+|++|++++|.+++..+ .+. ..++|+.|++++|.+++ .++..+ ..+++|+.|++++|++
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNNCL 410 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH-HHCCCCCEEECCSSSC
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHH-HhCCCccEEECCCCCC
Confidence 44555555555544322 111 13456666666665553 333332 2345666666666655
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.66 E-value=9.2e-16 Score=116.35 Aligned_cols=105 Identities=25% Similarity=0.283 Sum_probs=92.4
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
++++++|.++. +|..+. +.+++|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 13 ~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 46667778874 565553 789999999999999989999999999999999999998777778999999999999999
Q ss_pred cccccchhccCCCCCCEEecccCccccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGG 186 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 186 (261)
+.+..+..+..+++|++|++++|.+...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9988888899999999999999998754
No 123
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=3.2e-15 Score=134.93 Aligned_cols=165 Identities=21% Similarity=0.171 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLR 155 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 155 (261)
....|++++|++++ +|. .+++|++|++++|.+++. |. .+++|++|++++|.++. +|.. +++|++|+++
T Consensus 82 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 82 ELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVS 149 (622)
T ss_dssp TCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECc
Confidence 45578888888874 444 567777788877777753 32 34556666666666553 3332 2455555555
Q ss_pred cCccccc--cchhc--------------cCCCCCCEEecccCcccccCCccccccccC------------CCCCccEEEc
Q 042660 156 KNKLWGD--IGGIM--------------SELKNVEFVDLSFNRFHGGLGVGADNVSSI------------ANTNLEVLDL 207 (261)
Q Consensus 156 ~n~l~~~--~~~~~--------------~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l------------~~~~L~~L~L 207 (261)
+|.+.+. .+..+ ..+++|+.|++++|.+++ +|..+..+..+ ..++|+.|++
T Consensus 150 ~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~L 228 (622)
T 3g06_A 150 DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIV 228 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEc
Confidence 5555431 11111 123677777777777764 33322222221 1256899999
Q ss_pred ccCccCccCccCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 208 GDNGITGELPSFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 208 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|.+++.+ ..+++|+.|++++|.|+ .+|. .+++|+.|++++|.|+
T Consensus 229 s~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 229 SGNRLTSLP---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC
T ss_pred cCCccCcCC---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC
Confidence 999998643 44578999999999998 6776 4578999999999875
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.7e-16 Score=130.05 Aligned_cols=172 Identities=20% Similarity=0.141 Sum_probs=136.4
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCC-ccccCCCCCCE-EEccc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFP-GNLRNLQQLKV-LDLRK 156 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~l~~ 156 (261)
+++.++++++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|++++|.+.+.+| ..|.+++++++ +.+..
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 5778888888 566655 3579999999999997777889999999999999999876554 56888988775 56778
Q ss_pred CccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEccc-CccCccCc-cCCCCC-CCCEEEcccC
Q 042660 157 NKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGD-NGITGELP-SFGMLP-NLKVLRLGSN 233 (261)
Q Consensus 157 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~-n~l~~~~~-~~~~~~-~L~~L~L~~n 233 (261)
|++....|..|..+++|++|++++|.+.+..+..+... .++..+++.+ +.+....+ .+.... .++.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-----LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-----SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhccc-----chhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 99998889999999999999999999975544333322 3568888876 56776555 666664 6899999999
Q ss_pred cCcccCcHHHHhCCCCccEEEccC-ccC
Q 042660 234 QLFGMIPEELLESVIPIQELDLSG-NGF 260 (261)
Q Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~-N~l 260 (261)
.|+ .++..+|.. .+|+.+++++ |.+
T Consensus 165 ~i~-~i~~~~f~~-~~L~~l~l~~~n~l 190 (350)
T 4ay9_X 165 GIQ-EIHNSAFNG-TQLDELNLSDNNNL 190 (350)
T ss_dssp CCC-EECTTSSTT-EEEEEEECTTCTTC
T ss_pred ccc-CCChhhccc-cchhHHhhccCCcc
Confidence 998 787777653 5799999985 554
No 125
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.1e-17 Score=146.16 Aligned_cols=186 Identities=18% Similarity=0.110 Sum_probs=121.3
Q ss_pred CeEEEEcCCCCccccCccccc-----CCCCCCEEECcCCcCcCC----CCccccCCCCCCEEEccCCcCcCCC-----Cc
Q 042660 76 GSVNLSLSGNNFTGRIVPALG-----SISSLQYLDLSNNKFIGP----IPGRITDLWGLNYLNLSMNGFKGGF-----PG 141 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----p~ 141 (261)
...+|++++|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.++... +.
T Consensus 171 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 250 (461)
T 1z7x_W 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG 250 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH
Confidence 445788888887754444333 355788888888887753 4555667788888888888776432 22
Q ss_pred cccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCcc--
Q 042660 142 NLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE-- 215 (261)
Q Consensus 142 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~-- 215 (261)
.+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+........++|++|++++|.+++.
T Consensus 251 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 251 LLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHH
Confidence 233567788888888877654 45666667888888888887765444444333222224678888888887754
Q ss_pred --Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhC----CCCccEEEccCccCC
Q 042660 216 --LP-SFGMLPNLKVLRLGSNQLFGMIPEELLES----VIPIQELDLSGNGFT 261 (261)
Q Consensus 216 --~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~L~~N~ls 261 (261)
.+ .+..+++|+.|++++|.+++..+..+... .++|+.|++++|.++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 23 45566778888888887775444444321 347888888888764
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.4e-15 Score=115.87 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=105.0
Q ss_pred ccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCC
Q 042660 93 PALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKN 172 (261)
Q Consensus 93 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 172 (261)
..+....+|++|++++|.+... +......++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3466788899999999999854 54333344999999999999864 67888999999999999998776666788999
Q ss_pred CCEEecccCcccccCCc--cccccccCCCCCccEEEcccCccCccCcc----CCCCCCCCEEEcccCcCc
Q 042660 173 VEFVDLSFNRFHGGLGV--GADNVSSIANTNLEVLDLGDNGITGELPS----FGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 173 L~~L~l~~n~l~~~~p~--~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~L~~n~l~ 236 (261)
|++|++++|.++ .+|. .+..+ ++|+.|++++|.++..++. +..+++|+.|+++.|.+.
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l-----~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASL-----KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGC-----TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcC-----CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999985 3333 33333 4669999999998855443 777888999999888776
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=9.7e-16 Score=116.82 Aligned_cols=128 Identities=22% Similarity=0.208 Sum_probs=81.5
Q ss_pred CeEEEEcCCCCccccCcccccCC-CCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEc
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSI-SSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDL 154 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 154 (261)
....|++++|+++. ++. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 45577777777774 333 3333 3777777777777754 45667777777777777777543344467777777777
Q ss_pred ccCccccccch--hccCCCCCCEEecccCcccccCCcc----ccccccCCCCCccEEEcccCccCc
Q 042660 155 RKNKLWGDIGG--IMSELKNVEFVDLSFNRFHGGLGVG----ADNVSSIANTNLEVLDLGDNGITG 214 (261)
Q Consensus 155 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~----~~~~~~l~~~~L~~L~Ls~n~l~~ 214 (261)
++|.+.. +|. .+..+++|++|++++|.++. .|.. +..+ ++|+.|++++|....
T Consensus 96 ~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l-----~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKV-----PQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHC-----TTCSEETTEECCHHH
T ss_pred CCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHC-----CccceeCCCcCCHHH
Confidence 7777733 343 56677777777777777753 3332 3333 345777777776653
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.61 E-value=8.1e-15 Score=111.52 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=92.8
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
.+++++|+++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|++|++++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 6888889886 5666554 789999999999999999999999999999999999998666677899999999999999
Q ss_pred cccccchhccCCCCCCEEecccCcccc
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHG 185 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (261)
+.+..+..+..+++|++|++++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 988777779999999999999999974
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=3.9e-18 Score=132.66 Aligned_cols=149 Identities=25% Similarity=0.360 Sum_probs=91.9
Q ss_pred cCCCCCCEEECcCCcCcCCCCc------cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccC
Q 042660 96 GSISSLQYLDLSNNKFIGPIPG------RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSE 169 (261)
Q Consensus 96 ~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (261)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555666666555554 56666777777777777665 45 5666677777777777765 44555555
Q ss_pred CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCcH------
Q 042660 170 LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPE------ 241 (261)
Q Consensus 170 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~------ 241 (261)
+++|++|++++|.+++ +| .+..+ ++|+.|++++|.+++..+ .+..+++|++|++++|.+++.+|.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l-----~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKL-----VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHH-----HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccC-----CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 6677777777777654 22 23333 345777777777765433 566677777777777777654332
Q ss_pred ---HHHhCCCCccEEE
Q 042660 242 ---ELLESVIPIQELD 254 (261)
Q Consensus 242 ---~~~~~~~~L~~L~ 254 (261)
.++..+++|+.||
T Consensus 165 ~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHCSSCSEEC
T ss_pred HHHHHHHhCCCcEEEC
Confidence 2345566777776
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.56 E-value=2.5e-14 Score=128.01 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=120.5
Q ss_pred cccCcccccCCCCCCEEE-CcCCcCcCCCCc-----ccc--CCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 88 TGRIVPALGSISSLQYLD-LSNNKFIGPIPG-----RIT--DLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 88 ~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~-----~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
.+..|..+..+++|+.|+ ++.|.+...... .+. ....|++|++++|.+++ +|. ++.+++|+.|++++|.+
T Consensus 398 ~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp GGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred ccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 334455667778888887 555543211000 000 11258999999999997 676 99999999999999999
Q ss_pred ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC-c-cCCCCCCCCEEEcccCcCcc
Q 042660 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL-P-SFGMLPNLKVLRLGSNQLFG 237 (261)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~-~-~~~~~~~L~~L~L~~n~l~~ 237 (261)
+ .+|..++.+++|+.|++++|.+++ +| .+..+ ++|+.|+|++|++++.. | .+..+++|+.|+|++|.+++
T Consensus 476 ~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l-----~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 476 R-ALPPALAALRCLEVLQASDNALEN-VD-GVANL-----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTC-----SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred c-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCC-----CCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7 778899999999999999999986 55 55555 46799999999999885 6 89999999999999999986
Q ss_pred cCcH--HHHhCCCCccEEEc
Q 042660 238 MIPE--ELLESVIPIQELDL 255 (261)
Q Consensus 238 ~~~~--~~~~~~~~L~~L~L 255 (261)
..|. .++..+++|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 5442 34555788998875
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.3e-14 Score=128.26 Aligned_cols=121 Identities=22% Similarity=0.268 Sum_probs=101.2
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
.|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 58899999999986 565 888999999999999998 688899999999999999999977 45 78899999999999
Q ss_pred cCcccccC-CccccccccCCCCCccEEEcccCccCccCccC----CCCCCCCEEEc
Q 042660 180 FNRFHGGL-GVGADNVSSIANTNLEVLDLGDNGITGELPSF----GMLPNLKVLRL 230 (261)
Q Consensus 180 ~n~l~~~~-p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~----~~~~~L~~L~L 230 (261)
+|.+++.. |..+..+. +|+.|+|++|.+++.+|.. ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99998776 77777765 4599999999999877633 23788888864
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=8.3e-14 Score=105.49 Aligned_cols=108 Identities=24% Similarity=0.190 Sum_probs=84.8
Q ss_pred CCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 101 LQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 101 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
.+.+++++|.+.. +|..+ .+++++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4688999998884 55544 37888999999999887788888899999999999999887777788888888888888
Q ss_pred CcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 181 NRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 181 n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
|.+++..+..+..+. +|+.|+|++|.++...
T Consensus 88 N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLK-----SLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCT-----TCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCC-----CCCEEEeCCCCCCCCc
Confidence 888765555555554 4588888888877543
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.8e-13 Score=104.05 Aligned_cols=107 Identities=23% Similarity=0.231 Sum_probs=84.4
Q ss_pred CEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccC
Q 042660 102 QYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFN 181 (261)
Q Consensus 102 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 181 (261)
+.+++++|.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999887 4565543 78899999999998877888889999999999999998877777788888888888888
Q ss_pred cccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 182 RFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 182 ~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
.+++..+..+..+. +|+.|+|++|.+....
T Consensus 92 ~l~~l~~~~~~~l~-----~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLK-----SLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCT-----TCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhcccc-----CCCEEEeCCCCccccc
Confidence 88755444455553 4588888888877543
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=9.5e-14 Score=116.93 Aligned_cols=110 Identities=21% Similarity=0.227 Sum_probs=95.4
Q ss_pred C-CCCcceEEcCCCCCeEEEEcCCC-CccccCcccccCCCCCCEEECcC-CcCcCCCCccccCCCCCCEEEccCCcCcCC
Q 042660 62 C-PVSWTGVSCDPESGSVNLSLSGN-NFTGRIVPALGSISSLQYLDLSN-NKFIGPIPGRITDLWGLNYLNLSMNGFKGG 138 (261)
Q Consensus 62 c-~~~~~gv~c~~~~~~~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 138 (261)
| .|.|..|.|. ++ +++. +|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+++.
T Consensus 5 c~~C~~~~v~~~-----------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 71 (347)
T 2ifg_A 5 CCPHGSSGLRCT-----------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71 (347)
T ss_dssp SCCSSSSCEECC-----------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE
T ss_pred CccccCCEEEcC-----------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee
Confidence 5 6688777775 34 5664 677 99999999999996 999988888999999999999999999998
Q ss_pred CCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccc
Q 042660 139 FPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHG 185 (261)
Q Consensus 139 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (261)
.|..|..+++|+.|+|++|++.+..+..+..++ |+.|++.+|.+..
T Consensus 72 ~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 72 APDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888999999999999999999887777777666 9999999999863
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.9e-17 Score=127.73 Aligned_cols=146 Identities=22% Similarity=0.194 Sum_probs=115.3
Q ss_pred EEEcCCCCccccCcc------cccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEE
Q 042660 79 NLSLSGNNFTGRIVP------ALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVL 152 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 152 (261)
.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L 98 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL 98 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEE
T ss_pred CcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEE
Confidence 344444555554444 88999999999999999997 56 7889999999999999998 478777778999999
Q ss_pred EcccCccccccchhccCCCCCCEEecccCcccccCC-ccccccccCCCCCccEEEcccCccCccCcc-----------CC
Q 042660 153 DLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLG-VGADNVSSIANTNLEVLDLGDNGITGELPS-----------FG 220 (261)
Q Consensus 153 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-----------~~ 220 (261)
++++|.+.+. | .+..+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+.+..|. +.
T Consensus 99 ~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 99 WISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL-----DKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp EEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTT-----TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred ECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcC-----CCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 9999999773 4 57888999999999999974221 223333 5679999999999876553 67
Q ss_pred CCCCCCEEEcccCcCc
Q 042660 221 MLPNLKVLRLGSNQLF 236 (261)
Q Consensus 221 ~~~~L~~L~L~~n~l~ 236 (261)
.+++|+.|+ +|.++
T Consensus 172 ~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVD 185 (198)
T ss_dssp HCSSCSEEC--CGGGT
T ss_pred hCCCcEEEC--CcccC
Confidence 889999887 67665
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=9.3e-14 Score=116.24 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=29.5
Q ss_pred CCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccC
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRN 145 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 145 (261)
+++|+.+++++ .+..+.+.+|.++++|+.+++++|.+....+.+|.+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~ 146 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD 146 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcC
Confidence 67777777776 666666666777777777777777654333333433
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=3.3e-15 Score=127.09 Aligned_cols=183 Identities=16% Similarity=0.110 Sum_probs=116.7
Q ss_pred CeEEEEcCCCCccccCcccccC-----CCCCCEEECcCCcCcCCCCccc-cCCCCCCEEEccCCcCcCCCCccc-----c
Q 042660 76 GSVNLSLSGNNFTGRIVPALGS-----ISSLQYLDLSNNKFIGPIPGRI-TDLWGLNYLNLSMNGFKGGFPGNL-----R 144 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~-----~ 144 (261)
....|++++|.++......+.. ...|++|++++|.+.......+ ..+++|++|++++|.++......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 4458999999987644333322 2689999999998864333333 345678999999998875433333 3
Q ss_pred CCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccCCccccc-cccCCCCCccEEEcccCccCccCc--
Q 042660 145 NLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGLGVGADN-VSSIANTNLEVLDLGDNGITGELP-- 217 (261)
Q Consensus 145 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~~l~~~~L~~L~Ls~n~l~~~~~-- 217 (261)
..++|++|++++|.++.. ++..+...++|++|++++|.+++.....+.. +.. .++|++|+|++|.+++...
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~--~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR--NRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG--CSCCCEEECCSSCCCHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc--CCCcCeEECCCCCCCHHHHHH
Confidence 467899999999988653 4445577888999999999887432211111 111 2467999999999875322
Q ss_pred ---cCCCCCCCCEEEcccCcCcccCcHHHHhCCC-C---ccEEE--ccCccC
Q 042660 218 ---SFGMLPNLKVLRLGSNQLFGMIPEELLESVI-P---IQELD--LSGNGF 260 (261)
Q Consensus 218 ---~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-~---L~~L~--L~~N~l 260 (261)
.+...+.|+.|+|++|.|++.....+..... . ++.+. +..|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 3445678999999999988554444433221 2 56665 555543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=7.7e-13 Score=110.64 Aligned_cols=154 Identities=17% Similarity=0.104 Sum_probs=101.9
Q ss_pred CCCCCEEECcCCcCc--------------------CCCCccccC--------CCCCCEEEccCCcCcCCCCccccCCCCC
Q 042660 98 ISSLQYLDLSNNKFI--------------------GPIPGRITD--------LWGLNYLNLSMNGFKGGFPGNLRNLQQL 149 (261)
Q Consensus 98 l~~L~~L~l~~n~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~p~~~~~l~~L 149 (261)
+++|+.||+++|++. .+.+..|.+ +++|+.+++.+ .++...+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 566777777777666 233456677 99999999999 8887778889999999
Q ss_pred CEEEcccCccccccchhccC------------------------------------------------------------
Q 042660 150 KVLDLRKNKLWGDIGGIMSE------------------------------------------------------------ 169 (261)
Q Consensus 150 ~~L~l~~n~l~~~~~~~~~~------------------------------------------------------------ 169 (261)
+.+++.+|.+....+..|..
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 99999999764433333333
Q ss_pred ------------------CCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCC-EEE
Q 042660 170 ------------------LKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLK-VLR 229 (261)
Q Consensus 170 ------------------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~-~L~ 229 (261)
+++|+.+++++|.++...+..+..+. +|+++++.+| ++...+ .|..+.+|+ .++
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-----~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-----YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-----CCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 45666666666666543334444443 4466776666 554444 566666676 777
Q ss_pred cccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 230 LGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 230 L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
+.+ .++ .++...|.++.+|+.+++++|.+
T Consensus 281 l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 281 LPA-SVT-AIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECT-TCC-EECTTTTTTCTTEEEEEECSSCC
T ss_pred Ecc-cce-EEchhhhhCCccCCEEEeCCCcc
Confidence 666 555 56666666667777777766654
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.38 E-value=6.9e-15 Score=125.11 Aligned_cols=163 Identities=18% Similarity=0.093 Sum_probs=105.5
Q ss_pred CCCCCEEECcCCcCcCCCCccc----c-CCCCCCEEEccCCcCcCCCCccc-cCCCCCCEEEcccCccccccchhc----
Q 042660 98 ISSLQYLDLSNNKFIGPIPGRI----T-DLWGLNYLNLSMNGFKGGFPGNL-RNLQQLKVLDLRKNKLWGDIGGIM---- 167 (261)
Q Consensus 98 l~~L~~L~l~~n~l~~~~~~~~----~-~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~---- 167 (261)
.+.|+.|++++|.++......+ . ..++|++|++++|.++......+ ..+.+|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3568888888888875433333 2 23688888888888864333333 235678888888888866544444
Q ss_pred -cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC----c-cCCCCCCCCEEEcccCcCcccCcH
Q 042660 168 -SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL----P-SFGMLPNLKVLRLGSNQLFGMIPE 241 (261)
Q Consensus 168 -~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~L~~L~L~~n~l~~~~~~ 241 (261)
...++|+.|++++|.++......+...-. ..++|++|+|++|.+++.. + .+...++|+.|+|++|.|++....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 34678888888888886432222211100 1246788888888887532 2 456667888888888888754333
Q ss_pred HHH---hCCCCccEEEccCccCC
Q 042660 242 ELL---ESVIPIQELDLSGNGFT 261 (261)
Q Consensus 242 ~~~---~~~~~L~~L~L~~N~ls 261 (261)
.+. ...++|++|||++|+|+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 332 23467888888888874
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=1.2e-12 Score=110.06 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=83.3
Q ss_pred CEEECcCC-cCcCCCCccccCCCCCCEEEccC-CcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 102 QYLDLSNN-KFIGPIPGRITDLWGLNYLNLSM-NGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 102 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
..++.+++ .++. +|. +..+.+|++|+|++ |.+++..+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35678877 7874 666 88888899999985 88887777788889999999999999988888888888999999999
Q ss_pred cCcccccCCccccccccCCCCCccEEEcccCccCcc
Q 042660 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGE 215 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 215 (261)
+|.+++..+..+..+ .|+.|+|.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~------~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGL------SLQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSC------CCCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccC------CceEEEeeCCCccCC
Confidence 988875544443332 268888888888753
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=2.8e-14 Score=128.29 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=49.6
Q ss_pred CCccEEEcccCccCcc-Cc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccCC
Q 042660 200 TNLEVLDLGDNGITGE-LP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGFT 261 (261)
Q Consensus 200 ~~L~~L~Ls~n~l~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ls 261 (261)
++|+.|++++|++++. .+ .+..+++|+.|++++|.+++.....+...+++|+.|++++|+++
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 5689999999988763 34 45778899999999999886656666667789999999999875
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.26 E-value=1.9e-12 Score=116.33 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=61.4
Q ss_pred eEEEEcCCCC-ccc-cCcccccCCCCCCEEECcCCcCcCC----CCccccCCCCCCEEEccCCcCcC----CCCccccCC
Q 042660 77 SVNLSLSGNN-FTG-RIVPALGSISSLQYLDLSNNKFIGP----IPGRITDLWGLNYLNLSMNGFKG----GFPGNLRNL 146 (261)
Q Consensus 77 ~~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l 146 (261)
..+|++++|. +.. .++.....+++|++|++++|.+.+. ++..+..+++|++|++++|.+++ .++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 4567777665 221 1222234567777777777776654 22234556777777777777752 233344566
Q ss_pred CCCCEEEcccCccccccchhccCCCCCCEEeccc
Q 042660 147 QQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSF 180 (261)
Q Consensus 147 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 180 (261)
++|+.|++++|.+.+ ++..+..+++|+.|+++.
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECB
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccc
Confidence 777777777776644 445556666666666653
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.16 E-value=6.8e-12 Score=112.72 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCccccCccccc-CCCCCCEEECcCC-cCcCC-CCccccCCCCCCEEEccCCcCcCCCCccc----cCCCC
Q 042660 76 GSVNLSLSGNNFTGRIVPALG-SISSLQYLDLSNN-KFIGP-IPGRITDLWGLNYLNLSMNGFKGGFPGNL----RNLQQ 148 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~l~~ 148 (261)
...+|+++++.+++..+..+. .+++|++|++++| .+... ++..+..+++|++|++++|.+++..+..+ ..+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 556788888888776666564 5778888888887 44422 33333467888888888887765444333 35567
Q ss_pred CCEEEcccCc--cccc-cchhccCCCCCCEEecccCcccccCCccccccccC----------------------------
Q 042660 149 LKVLDLRKNK--LWGD-IGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI---------------------------- 197 (261)
Q Consensus 149 L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l---------------------------- 197 (261)
|+.|++++|. +... ++.....+++|++|++++|...+.++..+.....+
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~ 265 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK 265 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC
Confidence 8888888775 2211 22223446777777777662111111111110000
Q ss_pred ---------------------CCCCccEEEcccCccCccCc--cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEE
Q 042660 198 ---------------------ANTNLEVLDLGDNGITGELP--SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELD 254 (261)
Q Consensus 198 ---------------------~~~~L~~L~Ls~n~l~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 254 (261)
..++|++|++++|.+++... .+..+++|+.|++++| +++.....+...+++|+.|+
T Consensus 266 ~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred CcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 12467777777777654322 3456777777777777 44333344444566777777
Q ss_pred cc
Q 042660 255 LS 256 (261)
Q Consensus 255 L~ 256 (261)
++
T Consensus 345 L~ 346 (594)
T 2p1m_B 345 VF 346 (594)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.14 E-value=1.6e-12 Score=116.87 Aligned_cols=180 Identities=11% Similarity=-0.052 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCccccCc-ccccCCCCCCEEECcCCcCcCC-CCccccCCCCCCEEEccC---------CcCcCCCCccc-
Q 042660 76 GSVNLSLSGNNFTGRIV-PALGSISSLQYLDLSNNKFIGP-IPGRITDLWGLNYLNLSM---------NGFKGGFPGNL- 143 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~p~~~- 143 (261)
+...|++++|.+++... ..+..+++|++|++++| +... ++.....+++|++|+++. +.+++.....+
T Consensus 290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 45588888888765432 23456777788877766 3211 111112355666666622 23332111111
Q ss_pred cCCCCCCEEEcccCccccccchhcc-CCCCCCEEecc--c----C----------------------------cccccCC
Q 042660 144 RNLQQLKVLDLRKNKLWGDIGGIMS-ELKNVEFVDLS--F----N----------------------------RFHGGLG 188 (261)
Q Consensus 144 ~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n----------------------------~l~~~~p 188 (261)
..+++|+.|.+..|.+++.....+. .+++|+.|+++ + + .+++..+
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~ 448 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF 448 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHH
Confidence 1244555555555554443333332 34455555554 2 2 2222211
Q ss_pred ccccccccCCCCCccEEEcccCccCccCc-cC-CCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCccC
Q 042660 189 VGADNVSSIANTNLEVLDLGDNGITGELP-SF-GMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNGF 260 (261)
Q Consensus 189 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~l 260 (261)
..+.. ..++|+.|++++|.+++... .+ ..+++|+.|++++|.+++.....+...+++|+.|++++|++
T Consensus 449 ~~l~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGT----YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHH----HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHH----hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 11111 02467888888888765433 33 55778888888888886554444555567888888888875
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=7.7e-10 Score=94.88 Aligned_cols=173 Identities=12% Similarity=0.048 Sum_probs=80.7
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCc----------------------cccCCCCCCEEEccCCcCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPG----------------------RITDLWGLNYLNLSMNGFK 136 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l~ 136 (261)
++.+.. .+...-..+|.++.+|+.+++++|.+..+... +|.++++|+.+++..+ ++
T Consensus 161 ~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~ 238 (401)
T 4fdw_A 161 EIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VS 238 (401)
T ss_dssp EEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CC
T ss_pred EEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-cc
Confidence 444443 44444445556666666666665555433333 3444444444444432 22
Q ss_pred CCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC
Q 042660 137 GGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL 216 (261)
Q Consensus 137 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 216 (261)
.....+|.+ .+|+.+.+ .+.+.......|..+++|+.+++.+|.+.......+..-....+.+|+.+.+. +.++...
T Consensus 239 ~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~ 315 (401)
T 4fdw_A 239 TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG 315 (401)
T ss_dssp EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC
T ss_pred Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh
Confidence 222223333 33444444 22333444555666667777766665543110011111111112344666665 2344333
Q ss_pred c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCcc
Q 042660 217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
. .|.++.+|+.+.+..+ ++ .++...|..+ +|+.+++++|.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred hhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 3 5555666666666433 44 4555555555 56666666554
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=2e-09 Score=92.26 Aligned_cols=172 Identities=10% Similarity=0.018 Sum_probs=116.3
Q ss_pred EEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCc
Q 042660 79 NLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNK 158 (261)
Q Consensus 79 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 158 (261)
++.+..+ ++..-..+|.+ ..|+.+.+.. .+..+.+.+|.++.+|+.++++.|.++......|. ..+|+.+.+..+
T Consensus 139 ~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~- 213 (401)
T 4fdw_A 139 KVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT- 213 (401)
T ss_dssp EEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-
T ss_pred EEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-
Confidence 6676655 66555667777 4799999986 77777888999999999999999999865555565 688999988744
Q ss_pred cccccchhccCCCCCCEEecccCcccccCCccccc-----------------cccCCCCCccEEEcccCccC-----ccC
Q 042660 159 LWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADN-----------------VSSIANTNLEVLDLGDNGIT-----GEL 216 (261)
Q Consensus 159 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----------------~~~l~~~~L~~L~Ls~n~l~-----~~~ 216 (261)
+.......|.++++|+.+++..+ ++......+.. -....+.+|+.+.+.+|.+. ...
T Consensus 214 l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~ 292 (401)
T 4fdw_A 214 LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIH 292 (401)
T ss_dssp CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEEC
T ss_pred hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEEC
Confidence 66667778888888888888764 22111122211 11111345677777666554 233
Q ss_pred c-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 217 P-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 217 ~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
+ .|..+++|+.+.+.. .++ .++...|.++.+|+.+++..|
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT
T ss_pred HHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc
Confidence 3 566777777777763 355 566677777777777777544
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.5e-10 Score=97.79 Aligned_cols=165 Identities=15% Similarity=0.078 Sum_probs=102.5
Q ss_pred cccCCCCCCEEECcCCcCc---------CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccc
Q 042660 94 ALGSISSLQYLDLSNNKFI---------GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIG 164 (261)
Q Consensus 94 ~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 164 (261)
+...+++|+.|.+..+... +.+...+..+++|+.|.+++|.-. .++. +. +++|+.|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHH
Confidence 3456778888888665331 123344567788999999877311 2333 33 7889999988887765544
Q ss_pred hhcc--CCCCCCEEeccc--CcccccC-Ccccccc-ccCCCCCccEEEcccCccCccCc----cCCCCCCCCEEEcccCc
Q 042660 165 GIMS--ELKNVEFVDLSF--NRFHGGL-GVGADNV-SSIANTNLEVLDLGDNGITGELP----SFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 165 ~~~~--~l~~L~~L~l~~--n~l~~~~-p~~~~~~-~~l~~~~L~~L~Ls~n~l~~~~~----~~~~~~~L~~L~L~~n~ 234 (261)
..+. .+++|+.|+|+. |...+.. ...+... ....+++|+.|+|.+|.+.+..+ ....+++|+.|+|+.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 4443 678899988853 2221110 0111111 11124678999998888865332 12356789999999888
Q ss_pred CcccCcHHHHhC---CCCccEEEccCccCC
Q 042660 235 LFGMIPEELLES---VIPIQELDLSGNGFT 261 (261)
Q Consensus 235 l~~~~~~~~~~~---~~~L~~L~L~~N~ls 261 (261)
+++.....+... +++|+.|++++|.++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 876544444433 468899999888775
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.2e-09 Score=92.32 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=108.4
Q ss_pred CcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCcccc--CCCCCCEEEccc--Cccccc----
Q 042660 91 IVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLR--NLQQLKVLDLRK--NKLWGD---- 162 (261)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~--~l~~L~~L~l~~--n~l~~~---- 162 (261)
+...+..+++|+.|.+++|.-. .++. + .+++|++|++..+.++......+. .+++|+.|+|+. |...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455678899999999987311 2222 3 388999999999887654333443 689999999863 222111
Q ss_pred -cchhc--cCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccC----c-cCCCCCCCCEEEcccCc
Q 042660 163 -IGGIM--SELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGEL----P-SFGMLPNLKVLRLGSNQ 234 (261)
Q Consensus 163 -~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~----~-~~~~~~~L~~L~L~~n~ 234 (261)
+...+ ..+++|++|++.+|.+++..+..+..... .++|++|+|+.|.+.+.. + .+..+++|+.|+++.|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~--~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI--LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSS--GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCcc--CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11222 25799999999999997544444433222 367899999999998632 2 23457899999999999
Q ss_pred CcccCcHHHHhCCCCccEEEccCcc
Q 042660 235 LFGMIPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (261)
+++..-..+...+ ...++++.++
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 9855444443322 3557887664
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=1.4e-09 Score=83.27 Aligned_cols=119 Identities=11% Similarity=0.023 Sum_probs=66.7
Q ss_pred ccccCCCCCCEEEccCC-cCcCC----CCccccCCCCCCEEEcccCccccc----cchhccCCCCCCEEecccCcccccC
Q 042660 117 GRITDLWGLNYLNLSMN-GFKGG----FPGNLRNLQQLKVLDLRKNKLWGD----IGGIMSELKNVEFVDLSFNRFHGGL 187 (261)
Q Consensus 117 ~~~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 187 (261)
..+...+.|++|++++| .+... +...+...++|++|++++|.+... +.+.+...++|++|++++|.+++..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566777888888887 77532 334455567777777777777543 2334445566777777777775432
Q ss_pred CccccccccCCCCCccEEEc--ccCccCccC----c-cCCCCCCCCEEEcccCcCc
Q 042660 188 GVGADNVSSIANTNLEVLDL--GDNGITGEL----P-SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 188 p~~~~~~~~l~~~~L~~L~L--s~n~l~~~~----~-~~~~~~~L~~L~L~~n~l~ 236 (261)
...+...-. ..++|++|+| ++|.+.... . .+...+.|++|++++|.+.
T Consensus 110 ~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 111111100 1234566666 566665421 1 2334456666666666654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=4e-09 Score=80.64 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=70.7
Q ss_pred CcccccCCCCCCEEECcCC-cCcCC----CCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCcccc
Q 042660 91 IVPALGSISSLQYLDLSNN-KFIGP----IPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWG 161 (261)
Q Consensus 91 ~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~ 161 (261)
+...+...+.|++|++++| .+... +...+...++|++|++++|.++.. +...+...+.|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3344555667777777777 66532 233445566777777777776532 23334445667777777777754
Q ss_pred c----cchhccCCCCCCEEec--ccCcccccCCccccccccCCCCCccEEEcccCccC
Q 042660 162 D----IGGIMSELKNVEFVDL--SFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGIT 213 (261)
Q Consensus 162 ~----~~~~~~~l~~L~~L~l--~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~ 213 (261)
. +...+...++|++|++ ++|.++......+...-. ..++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCC
Confidence 3 3455556667777777 667775432222222110 1245677777777764
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=1.4e-07 Score=76.04 Aligned_cols=84 Identities=21% Similarity=0.167 Sum_probs=58.8
Q ss_pred EECcCCcCc---CCCCccccCCCCCCEEEccCCcCcC--CCCccccCCCCCCEEEcccCccccc-cchhccCCCCCCEEe
Q 042660 104 LDLSNNKFI---GPIPGRITDLWGLNYLNLSMNGFKG--GFPGNLRNLQQLKVLDLRKNKLWGD-IGGIMSELKNVEFVD 177 (261)
Q Consensus 104 L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 177 (261)
++++.|... +.++....++++|++|+|++|++++ .+|..+..+++|+.|+|++|.+.+. ....+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 566777433 2222222467889999999999987 3456667889999999999999765 11223334 899999
Q ss_pred cccCcccccCC
Q 042660 178 LSFNRFHGGLG 188 (261)
Q Consensus 178 l~~n~l~~~~p 188 (261)
+++|.+.+..|
T Consensus 227 L~~Npl~~~~~ 237 (267)
T 3rw6_A 227 LDGNSLCDTFR 237 (267)
T ss_dssp CTTSTTGGGCS
T ss_pred ccCCcCccccC
Confidence 99999987655
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=4.1e-08 Score=79.14 Aligned_cols=40 Identities=30% Similarity=0.552 Sum_probs=22.2
Q ss_pred CCCCCCEEEcccCcccc--ccchhccCCCCCCEEecccCccc
Q 042660 145 NLQQLKVLDLRKNKLWG--DIGGIMSELKNVEFVDLSFNRFH 184 (261)
Q Consensus 145 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~ 184 (261)
++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 44556666666666655 23344455555555555555554
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=5.6e-07 Score=67.62 Aligned_cols=83 Identities=12% Similarity=0.102 Sum_probs=41.7
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCc-CcCCCCccccCC----CCCCEEEcccCc-cccccchhccCCCCC
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNG-FKGGFPGNLRNL----QQLKVLDLRKNK-LWGDIGGIMSELKNV 173 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~L 173 (261)
.|+.||++++.++..--..+.++++|++|+|++|. ++...-..+..+ ++|++|++++|. ++...-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555555544333334555555555555553 443222223332 246666666653 554444445556666
Q ss_pred CEEecccCc
Q 042660 174 EFVDLSFNR 182 (261)
Q Consensus 174 ~~L~l~~n~ 182 (261)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666553
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=5.2e-05 Score=64.51 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=28.4
Q ss_pred CeEEEEcCCCCccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEE
Q 042660 76 GSVNLSLSGNNFTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYL 128 (261)
Q Consensus 76 ~~~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 128 (261)
+..++.+.. .++..-..+|.++.+|+.+++..+ +..+...+|.++..|+.+
T Consensus 72 ~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 72 KVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp TEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCC
T ss_pred CceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhh
Confidence 455666653 355455567777788888877644 333333344444444433
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=3.8e-06 Score=63.05 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=21.3
Q ss_pred CccEEEcccCc-cCccCc-cCCCCCCCCEEEcccCc-Cc
Q 042660 201 NLEVLDLGDNG-ITGELP-SFGMLPNLKVLRLGSNQ-LF 236 (261)
Q Consensus 201 ~L~~L~Ls~n~-l~~~~~-~~~~~~~L~~L~L~~n~-l~ 236 (261)
+|++|+|++|. +++.-- .+..+++|+.|+++++. ++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 35666666653 553211 44556777777777764 44
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.88 E-value=4.9e-06 Score=63.67 Aligned_cols=116 Identities=7% Similarity=0.026 Sum_probs=62.2
Q ss_pred ccCCCCCCEEEccCC-cCcC----CCCccccCCCCCCEEEcccCcccccc----chhccCCCCCCEEecccCcccccCCc
Q 042660 119 ITDLWGLNYLNLSMN-GFKG----GFPGNLRNLQQLKVLDLRKNKLWGDI----GGIMSELKNVEFVDLSFNRFHGGLGV 189 (261)
Q Consensus 119 ~~~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~p~ 189 (261)
+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+|++|.+.... .+.+..-..|++|+|++|.|+...-.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 455667888888775 6653 13344555667777777777775442 33344556777777777777543222
Q ss_pred cccccccCCCCCccEEEcccC---ccCcc----Cc-cCCCCCCCCEEEcccCcC
Q 042660 190 GADNVSSIANTNLEVLDLGDN---GITGE----LP-SFGMLPNLKVLRLGSNQL 235 (261)
Q Consensus 190 ~~~~~~~l~~~~L~~L~Ls~n---~l~~~----~~-~~~~~~~L~~L~L~~n~l 235 (261)
.+...-. .+..|++|+|++| .+... +. .+..-+.|+.|+++.|.+
T Consensus 117 ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2222111 1234666666543 22221 11 233445566666655544
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.74 E-value=0.00028 Score=59.55 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=83.0
Q ss_pred ccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCC
Q 042660 95 LGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVE 174 (261)
Q Consensus 95 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 174 (261)
+.....++.+.+..+ +..+....|.+...|+.+.+..+ ++.....+|.++.+|+.+.+..+ +.......|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 444555666666543 33344455666777777777655 44444566667777777777543 4444555677777777
Q ss_pred EEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCC
Q 042660 175 FVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESV 247 (261)
Q Consensus 175 ~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 247 (261)
.+.+.++.+.......+..+ .+|+.+.+..+ ++.... +|.++.+|+.+.+..+ ++ .+....|.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c-----~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c 355 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDC-----VKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGS 355 (379)
T ss_dssp EEEECCTTCCEECTTTTTTC-----TTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred cccccccccceehhhhhcCC-----CCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence 77777666653333344443 34577777543 444444 6777777777777543 44 4444555443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.68 E-value=0.00044 Score=58.72 Aligned_cols=127 Identities=14% Similarity=0.028 Sum_probs=66.7
Q ss_pred ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccCC
Q 042660 119 ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIA 198 (261)
Q Consensus 119 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 198 (261)
|.+...++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+..+ +.......+..+
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c---- 319 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESC---- 319 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTC----
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCC----
Confidence 344444555544443222 2233344444444444433221 2234555666666666543 321222223332
Q ss_pred CCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 199 NTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 199 ~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
.+|+.+++..+ ++.... .|.++.+|+.+.+..+ ++ .++...|.++.+|+.+++..+
T Consensus 320 -~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 320 -TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred -CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 35577777543 554444 6777777888777665 55 566677777777777777643
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.67 E-value=0.00057 Score=57.61 Aligned_cols=131 Identities=11% Similarity=0.071 Sum_probs=90.6
Q ss_pred cccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecccCcccccCCccccccccC
Q 042660 118 RITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSI 197 (261)
Q Consensus 118 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 197 (261)
.+.....++.+.+..+ +.......+.++..|+.+.+..+ +.......|..+.+|+.+.+..+ +.......+..+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c--- 285 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC--- 285 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC---
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc---
Confidence 3445566777766544 33344566777888888888655 55556677888888888888644 322222233333
Q ss_pred CCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 198 ANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 198 ~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
.+|+.+.+.++.++.... .|.++.+|+.+.+..+ ++ .+....|.++.+|+.+.+..+
T Consensus 286 --~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 286 --SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp --TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred --cccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 567999999888886666 8899999999999754 65 677788888888888877543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.00028 Score=59.97 Aligned_cols=147 Identities=10% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCCEEECcCCcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCccccccchhccCCCCCCEEecc
Q 042660 100 SLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKLWGDIGGIMSELKNVEFVDLS 179 (261)
Q Consensus 100 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 179 (261)
.+..+.+. +.+..+...+|.++..|+.+.+..+... ....+|.++..|+.+.+. +.+.......|.++.+|+.+++.
T Consensus 243 ~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeC
Confidence 34444443 2344455567788888888888765443 456677888888888885 44556666778888888888886
Q ss_pred cCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCcccCcHHHHhCCCCccEEEccCc
Q 042660 180 FNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGMIPEELLESVIPIQELDLSGN 258 (261)
Q Consensus 180 ~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~L~~N 258 (261)
.+ ++......+..+ .+|+.+.+..+ ++.... .|.++.+|+.+++.++... ...+....+|+.+.+..|
T Consensus 320 ~~-v~~I~~~aF~~C-----~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 320 EG-ITQILDDAFAGC-----EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TT-CCEECTTTTTTC-----TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC--------
T ss_pred Cc-ccEehHhHhhCC-----CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCC
Confidence 54 332222333333 45688888654 554555 7888899999988877543 122344557888877765
Q ss_pred cC
Q 042660 259 GF 260 (261)
Q Consensus 259 ~l 260 (261)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.56 E-value=2.1e-05 Score=60.19 Aligned_cols=118 Identities=8% Similarity=0.044 Sum_probs=64.5
Q ss_pred cccCCCCCCEEECcCC-cCcC----CCCccccCCCCCCEEEccCCcCcCC----CCccccCCCCCCEEEcccCccccc--
Q 042660 94 ALGSISSLQYLDLSNN-KFIG----PIPGRITDLWGLNYLNLSMNGFKGG----FPGNLRNLQQLKVLDLRKNKLWGD-- 162 (261)
Q Consensus 94 ~~~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~-- 162 (261)
.+.+-+.|++|++++| .|.. .+.+.+..-..|++|+|++|.+... +.+.+..-+.|+.|+|++|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3444566777777764 5542 2334455566777777777777642 223333456777777777777544
Q ss_pred --cchhccCCCCCCEEecccC---cccccCCccccccccCCCCCccEEEcccCcc
Q 042660 163 --IGGIMSELKNVEFVDLSFN---RFHGGLGVGADNVSSIANTNLEVLDLGDNGI 212 (261)
Q Consensus 163 --~~~~~~~l~~L~~L~l~~n---~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l 212 (261)
+.+.+..-..|++|+|++| .+.......+...-. .++.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCc
Confidence 3344555566777777654 222111111111110 134567777766654
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.00046 Score=58.61 Aligned_cols=156 Identities=12% Similarity=0.105 Sum_probs=99.9
Q ss_pred ccccCCCCCCEEECcCCcCcCCCCcc-------------ccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 93 PALGSISSLQYLDLSNNKFIGPIPGR-------------ITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 93 ~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
.++..+..++......+......... +.....+..+.+..+ ++.....+|.++..|+.+.+..+..
T Consensus 199 ~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 199 NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC
T ss_pred chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc
Confidence 34555666766665554433211111 122334445554432 3334456788889999998865543
Q ss_pred ccccchhccCCCCCCEEecccCcccccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCccc
Q 042660 160 WGDIGGIMSELKNVEFVDLSFNRFHGGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLFGM 238 (261)
Q Consensus 160 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~ 238 (261)
......|.++..|+.+.+.. .+.......+..+ .+|+.+.+..+ ++.... .|.++.+|+.+.+..+ ++ .
T Consensus 278 -~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c-----~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~ 347 (394)
T 4gt6_A 278 -SIGTGAFMNCPALQDIEFSS-RITELPESVFAGC-----ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-K 347 (394)
T ss_dssp -EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTC-----TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-B
T ss_pred -eecCcccccccccccccCCC-cccccCceeecCC-----CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-E
Confidence 45567788899999998863 3432222333333 46799998764 554555 7888999999999654 66 7
Q ss_pred CcHHHHhCCCCccEEEccCcc
Q 042660 239 IPEELLESVIPIQELDLSGNG 259 (261)
Q Consensus 239 ~~~~~~~~~~~L~~L~L~~N~ 259 (261)
+....|.++.+|+.+++.++.
T Consensus 348 I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 348 IPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCGGGGTTCTTCCEEEESSCH
T ss_pred EhHhHhhCCCCCCEEEECCce
Confidence 888889988899999998763
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=0.00019 Score=51.17 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=33.1
Q ss_pred EEecccCccc-ccCCccccccccCCCCCccEEEcccCccCccCc-cCCCCCCCCEEEcccCcCc
Q 042660 175 FVDLSFNRFH-GGLGVGADNVSSIANTNLEVLDLGDNGITGELP-SFGMLPNLKVLRLGSNQLF 236 (261)
Q Consensus 175 ~L~l~~n~l~-~~~p~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~ 236 (261)
.++.+++.++ ..+|..+ +.+|+.|+|++|+|+...+ .|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2333321 1345777777777776555 5666677777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.13 E-value=0.0012 Score=46.98 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=27.4
Q ss_pred EEECcCCcCc-CCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccCcc
Q 042660 103 YLDLSNNKFI-GPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKNKL 159 (261)
Q Consensus 103 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 159 (261)
.++-+++.++ ..+|..+. .++++|+|++|.|+...+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 23332221 2355556666555544444455555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.92 E-value=21 Score=23.37 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=22.5
Q ss_pred ccccCcccccCCCCCCEEECcCCcCcCCCCccccCCCCCCEEEccC
Q 042660 87 FTGRIVPALGSISSLQYLDLSNNKFIGPIPGRITDLWGLNYLNLSM 132 (261)
Q Consensus 87 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 132 (261)
++.+-..+|.++..|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445555555555555533 3334444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.84 E-value=32 Score=22.45 Aligned_cols=48 Identities=13% Similarity=0.059 Sum_probs=33.4
Q ss_pred CcCcCCCCccccCCCCCCEEEccCCcCcCCCCccccCCCCCCEEEcccC
Q 042660 109 NKFIGPIPGRITDLWGLNYLNLSMNGFKGGFPGNLRNLQQLKVLDLRKN 157 (261)
Q Consensus 109 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n 157 (261)
..++.+...+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566677888888888888765 44455677888888888877653
Done!