BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042662
(690 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 209/488 (42%), Gaps = 63/488 (12%)
Query: 1 EIPVEL-GNLAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYE-IGNLH 58
EIP L G L L L N G +P +GE+P + + +
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 59 NLEWMAFSFNKLVGVVPTAIFNVST------LKSLYLHNVRLPNL--------EELLLWG 104
L+ + SFN+ G +P ++ N+S L S LPNL +EL L
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPK--- 161
N F+G IP + N S+L +L L N SG IP++ GSL L L L N L P+
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 162 ---------LSF-------LSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMH 205
L F S LSNC L + NN L G +P+ IG L +++ ++
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLS 519
Query: 206 NCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDN- 264
N + SG+IP E+ + +LI + L N NG+IP A + G I N
Sbjct: 520 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-------------KQSGKIAANF 566
Query: 265 LCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLS 324
+ G ++ + G K C +GNL + + S QL + + N++
Sbjct: 567 IAGKRYVYIKNDGMKKEC----HGAGNLLEFQGIR--SEQLNRLSTRN-------PCNIT 613
Query: 325 SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
S + G N ++ LD+S N SG IP +IG + L L L +N + GSIP+ +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 385 GDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKG 444
GDL G IP ++ L L EI++S NNL G IP G F F F
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 445 NELLCGMP 452
N LCG P
Sbjct: 734 NPGLCGYP 741
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 162/348 (46%), Gaps = 18/348 (5%)
Query: 50 IPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEEL 100
IP+ +G+ L+ + S NKL G AI + LK L + + + L +L+ L
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 271
Query: 101 LLWGNNFSGTIPSFIFNASKLFT-LGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSST 159
L N F+G IP F+ A T L L N F G +P FGS LE L+L+ N +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 160 PKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSI-PEEIS 218
P + +L + L+ N G LP ++ NLS S+ + + N SG I P
Sbjct: 332 P----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 219 NLTN-LIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLG 277
N N L +YL N G IP N L G+IP +L L+ L L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSNSFTGPLPLKI 336
N L G IP + L L L N LT IPS L N ++ ++LS+N TG +P I
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 337 GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
G L L LS N+FSG IP ++G + L +L L N G+IP ++
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 164/377 (43%), Gaps = 28/377 (7%)
Query: 60 LEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNAS 119
L+ +A S NK+ G V + R NLE L + NNFS IP F+ + S
Sbjct: 177 LKHLAISGNKISGDVDVS---------------RCVNLEFLDVSSNNFSTGIP-FLGDCS 220
Query: 120 KLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGF 179
L L + N SG + L+ L+++ N P L K L+Y
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL-------KSLQYLSL 273
Query: 180 YNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPI 239
N G +P + ++ + + G++P + + L ++ L N +G +P+
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 240 AXXXXXXXXXXXXED-NQLEGSIPDNLCGLAA-LFQLDLGGNKLCGFIPA--CSGNLTNL 295
N+ G +P++L L+A L LDL N G I C L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 296 RKLYLGSNQLT-SIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG 354
++LYL +N T IP TL N +++ L+LS N +G +P +G+ + L L L +N G
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 355 VIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDL 414
IP ++ +K L+ L L++N L G IP+ + + G IP + +L +L
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 415 KEINVSFNNLEGEIPRE 431
+ +S N+ G IP E
Sbjct: 514 AILKLSNNSFSGNIPAE 530
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 62 WMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKL 121
++ S+N L G +P I + +P L L L N+ SG+IP + + L
Sbjct: 633 FLDMSYNMLSGYIPKEIGS-------------MPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYN 181
L L N G IP +L L + L++N L+ P++ + K+L G
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Query: 182 NPL 184
PL
Sbjct: 740 YPL 742
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 148/488 (30%), Positives = 208/488 (42%), Gaps = 63/488 (12%)
Query: 1 EIPVEL-GNLAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYE-IGNLH 58
EIP L G L L L N G +P +GE+P + + +
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 59 NLEWMAFSFNKLVGVVPTAIFNVST------LKSLYLHNVRLPNL--------EELLLWG 104
L+ + SFN+ G +P ++ N+S L S LPNL +EL L
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPK--- 161
N F+G IP + N S+L +L L N SG IP++ GSL L L L N L P+
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 162 ---------LSF-------LSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMH 205
L F S LSNC L + NN L G +P+ IG L +++ ++
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLS 522
Query: 206 NCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDN- 264
N + SG+IP E+ + +LI + L N NG+IP A + G I N
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF-------------KQSGKIAANF 569
Query: 265 LCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLS 324
+ G ++ + G K C +GNL + + S QL L N++
Sbjct: 570 IAGKRYVYIKNDGMKKEC----HGAGNLLEFQGIR--SEQLN-------RLSTRNPCNIT 616
Query: 325 SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
S + G N ++ LD+S N SG IP +IG + L L L +N + GSIP+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 385 GDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKG 444
GDL G IP ++ L L EI++S NNL G IP G F F F
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 445 NELLCGMP 452
N LCG P
Sbjct: 737 NPGLCGYP 744
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 162/348 (46%), Gaps = 18/348 (5%)
Query: 50 IPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEEL 100
IP+ +G+ L+ + S NKL G AI + LK L + + + L +L+ L
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274
Query: 101 LLWGNNFSGTIPSFIFNASKLFT-LGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSST 159
L N F+G IP F+ A T L L N F G +P FGS LE L+L+ N +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 160 PKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSI-PEEIS 218
P + +L + L+ N G LP ++ NLS S+ + + N SG I P
Sbjct: 335 P----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 219 NLTN-LIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLG 277
N N L +YL N G IP N L G+IP +L L+ L L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSNSFTGPLPLKI 336
N L G IP + L L L N LT IPS L N ++ ++LS+N TG +P I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 337 GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
G L L LS N+FSG IP ++G + L +L L N G+IP ++
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 164/377 (43%), Gaps = 28/377 (7%)
Query: 60 LEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNAS 119
L+ +A S NK+ G V + R NLE L + NNFS IP F+ + S
Sbjct: 180 LKHLAISGNKISGDVDVS---------------RCVNLEFLDVSSNNFSTGIP-FLGDCS 223
Query: 120 KLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGF 179
L L + N SG + L+ L+++ N P L K L+Y
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL-------KSLQYLSL 276
Query: 180 YNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPI 239
N G +P + ++ + + G++P + + L ++ L N +G +P+
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 240 AXXXXXXXXXXXXED-NQLEGSIPDNLCGLAA-LFQLDLGGNKLCGFIPA--CSGNLTNL 295
N+ G +P++L L+A L LDL N G I C L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 296 RKLYLGSNQLT-SIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG 354
++LYL +N T IP TL N +++ L+LS N +G +P +G+ + L L L +N G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 355 VIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDL 414
IP ++ +K L+ L L++N L G IP+ + + G IP + +L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 415 KEINVSFNNLEGEIPRE 431
+ +S N+ G IP E
Sbjct: 517 AILKLSNNSFSGNIPAE 533
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 62 WMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKL 121
++ S+N L G +P I + +P L L L N+ SG+IP + + L
Sbjct: 636 FLDMSYNMLSGYIPKEIGS-------------MPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYN 181
L L N G IP +L L + L++N L+ P++ + K+L G
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Query: 182 NPL 184
PL
Sbjct: 743 YPL 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/263 (29%), Positives = 118/263 (44%), Gaps = 12/263 (4%)
Query: 200 EDFQMHNCNISG-------SIPEEISNLTNLIAIYLGR-NKLNGSIPIAXXXXXXXXXXX 251
+ ++++N ++SG IP ++NL L +Y+G N L G IP A
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 252 XEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLT-SIPS 310
+ G+IPD L + L LD N L G +P +L NL + N+++ +IP
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 311 TLWNLKDIL-HLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYL 369
+ + + + +S N TG +P N N L +DLS N G G K+ Q +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 370 FLEYNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIP 429
L N L + +G GT+P L +L L +NVSFNNL GEIP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 430 REGPFRNFSAESFKGNELLCGMP 452
+ G + F ++ N+ LCG P
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP 308
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 2 IPVELGNLAELQKLWLDN-NSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEIGNLHNL 60
IP L NL L L++ N+L G IP +I +G IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 61 EWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASK 120
+ FS+N L G +P +I LPNL + GN SG IP + SK
Sbjct: 128 VTLDFSYNALSGTLPPSI-------------SSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 121 LFT-LGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGF 179
LFT + + N +G IP TF +L NL ++ L+ N L L + K +
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL-----FGSDKNTQKIHL 228
Query: 180 YNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIP 238
N L L + LS+++ + N I G++P+ ++ L L ++ + N L G IP
Sbjct: 229 AKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 42/242 (17%)
Query: 74 VPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSG 133
+P+++ N+ L LY+ + NN G IP I ++L L + + SG
Sbjct: 68 IPSSLANLPYLNFLYIGGI------------NNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 134 FIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIG 193
IP+ ++ L L + N L+ + P S+S+ L F N + G +P + G
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNALSGTLPP-----SISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 194 NLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXE 253
+ S+ + ++G IP +NL NL + L RN L G +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 254 DNQLE-----------------------GSIPDNLCGLAALFQLDLGGNKLCGFIPACSG 290
N L G++P L L L L++ N LCG IP G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GG 288
Query: 291 NL 292
NL
Sbjct: 289 NL 290
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 44/321 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L+NL + FS N+L + P LK+L L ++L+ N + P +
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLT-------KLVDILMNNNQIADITP--LA 104
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176
N + L L L N + P +L NL L L+ N +S +S+LS L+
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-------TISDISALSGLTSLQQ 155
Query: 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG-SIPEEISNLTNLIAIYLGRNKLNG 235
F +N + + P A NL+ ++E + + +S S+ +++NL +LIA N+++
Sbjct: 156 LSFSSNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISD 209
Query: 236 SIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNL 295
P+ NQL+ L L L LDL N++ P SG LT L
Sbjct: 210 ITPLGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG-LTKL 263
Query: 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355
+L LG+NQ+++I S L L + +L L+ N P I N L L L NN S +
Sbjct: 264 TELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 356 IPTKIGGLKDLQYLFLEYNRL 376
P + L LQ LF N++
Sbjct: 321 SP--VSSLTKLQRLFFYNNKV 339
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 112/289 (38%), Gaps = 66/289 (22%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 125
Query: 313 WNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLE 372
NL ++ L LSSN+ + L L QL S N + + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 373 YNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREG 432
N+ + D+ L KL +L+ + ++ NN +I G
Sbjct: 182 SNK--------VSDISV------------------LAKLTNLESL-IATNNQISDITPLG 214
Query: 433 PFRNFSAESFKGNEL-----LCGMPNLQVLSCRTNHTSGKNDLLIGIVLPLSTIFMMVVV 487
N S GN+L L + NL L N S + PLS + + +
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--------LAPLSGLTKLTEL 266
Query: 488 ---------------LLILKYRKGGKSQLNDANMSSVANQKRFTYLELF 521
L L + ++QL D +S ++N K TYL L+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 313
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 32/167 (19%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWG 104
+ L NLE + + N++ + P I + L L L+ L NL +L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP---- 160
N S P + +KL L L N S P L L L LN+N L +P
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 304
Query: 161 -----------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLS 196
+S +S +S+ L+ FYNN + + ++ NL+
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 349
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 143/321 (44%), Gaps = 44/321 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L+NL + FS N+L + P LK+L L ++L+ N + P +
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLT-------KLVDILMNNNQIADITP--LA 104
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176
N + L L L N + P +L NL L L+ N +S +S+LS L+
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-------TISDISALSGLTSLQQ 155
Query: 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG-SIPEEISNLTNLIAIYLGRNKLNG 235
F +N + + P A NL+ ++E + + +S S+ +++NL +LIA N+++
Sbjct: 156 LNFSSNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISD 209
Query: 236 SIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNL 295
P+ NQL+ L L L LDL N++ P SG LT L
Sbjct: 210 ITPLGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG-LTKL 263
Query: 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355
+L LG+NQ+++I S L L + +L L+ N P I N L L L NN S +
Sbjct: 264 TELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 320
Query: 356 IPTKIGGLKDLQYLFLEYNRL 376
P + L LQ LF N++
Sbjct: 321 SP--VSSLTKLQRLFFYNNKV 339
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 113/289 (39%), Gaps = 66/289 (22%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 125
Query: 313 WNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLE 372
NL ++ L LSSN+ + L L QL+ S N + + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSNTISDISAL--SGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 373 YNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREG 432
N+ + D+ L KL +L+ + ++ NN +I G
Sbjct: 182 SNK--------VSDISV------------------LAKLTNLESL-IATNNQISDITPLG 214
Query: 433 PFRNFSAESFKGNEL-----LCGMPNLQVLSCRTNHTSGKNDLLIGIVLPLSTIFMMVVV 487
N S GN+L L + NL L N S + PLS + + +
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--------LAPLSGLTKLTEL 266
Query: 488 ---------------LLILKYRKGGKSQLNDANMSSVANQKRFTYLELF 521
L L + ++QL D +S ++N K TYL L+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 313
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 32/167 (19%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWG 104
+ L NLE + + N++ + P I + L L L+ L NL +L L
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 248
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP---- 160
N S P + +KL L L N S P L L L LN+N L +P
Sbjct: 249 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 304
Query: 161 -----------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLS 196
+S +S +S+ L+ FYNN + + ++ NL+
Sbjct: 305 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 349
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 84/180 (46%), Gaps = 13/180 (7%)
Query: 260 SIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDI 318
+IP N+ A +LDL NKL LT LR LYL N+L ++P+ ++ LK++
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 319 LHLNLSSNSFTGPLPLKIGNFNVLI---QLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNR 375
L ++ N L IG F+ L+ +L L N + P L L YL L YN
Sbjct: 88 ETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 376 LQGSIPNSIGDLIXXXXXXXXXXXXXGTIPI-SLEKLLDLKEINVSFNNLEGEIPREGPF 434
LQ S+P + D + +P + +KL +LK + + N L+ +P EG F
Sbjct: 145 LQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP-EGAF 201
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 68 NKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASK-LFTLGL 126
NKL + A ++ L+ LYL++ +L T+P+ IF K L TL +
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKL--------------QTLPAGIFKELKNLETLWV 92
Query: 127 EENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGG 186
+N F L NL L L+ N L S P++ SL+ YL G+ N L
Sbjct: 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLS-LGY--NELQS 147
Query: 187 ILPRAIGNLSQSMEDFQMHNCNISGSIPE-EISNLTNLIAIYLGRNKL 233
LP+ + + S+++ +++N N +PE LT L + L N+L
Sbjct: 148 -LPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 19/148 (12%)
Query: 9 LAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEI-GNLHNLEWMAFSF 67
L L+ LW+ +N L +P +F +P + +L L +++ +
Sbjct: 84 LKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 68 NKLVGVVPTAIFN-VSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNA-SKLFTLG 125
N+L + P +F+ +++LK L L+N +L +P F+ ++L TL
Sbjct: 143 NELQSL-PKGVFDKLTSLKELRLYNNQLKR--------------VPEGAFDKLTELKTLK 187
Query: 126 LEENSFSGFIPNTFGSLRNLEWLSLNDN 153
L+ N F SL L+ L L +N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 220 LTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXED-NQLEGSIPDNLCGLAALFQLDLGG 278
L NL +++ NKL ++PI D NQL+ P L L L LG
Sbjct: 84 LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY 142
Query: 279 NKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNSF 328
N+L LT+L++L L +NQL +P ++ L ++ L L +N
Sbjct: 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 139/334 (41%), Gaps = 60/334 (17%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWGNNF 107
L+NL + FS N+L + P + N++ L + ++N L NL L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 108 SGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP------- 160
+ P + N + L L L N+ S + L +L+ LS + N +T P
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLANLTTL 175
Query: 161 --------KLSFLSSLSNCKYLEYFGFYNNPLGGILP-----------------RAIGNL 195
K+S +S L+ LE NN + I P + IG L
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 196 SQ--SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXE 253
+ ++ D + N IS P +S LT L + LG N+++ P+A
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELN 291
Query: 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW 313
+NQLE P + L L L L N + P S LT L++L+ +N+++ + S+L
Sbjct: 292 ENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFSNNKVSDV-SSLA 346
Query: 314 NLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDL 347
NL +I L+ N + PL N + QL L
Sbjct: 347 NLTNINWLSAGHNQISDLTPL--ANLTRITQLGL 378
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 112/289 (38%), Gaps = 66/289 (22%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 125
Query: 313 WNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLE 372
NL ++ L LSSN+ + L L QL S N + + P + L L+ L +
Sbjct: 126 KNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 373 YNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREG 432
N+ + D+ L KL +L+ + ++ NN +I G
Sbjct: 182 SNK--------VSDISV------------------LAKLTNLESL-IATNNQISDITPLG 214
Query: 433 PFRNFSAESFKGNEL-----LCGMPNLQVLSCRTNHTSGKNDLLIGIVLPLSTIFMMVVV 487
N S GN+L L + NL L N S + PLS + + +
Sbjct: 215 ILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--------LAPLSGLTKLTEL 266
Query: 488 ---------------LLILKYRKGGKSQLNDANMSSVANQKRFTYLELF 521
L L + ++QL D +S ++N K TYL L+
Sbjct: 267 KLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLY 313
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 142/321 (44%), Gaps = 45/321 (14%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L+NL + FS N+L + P LK+L L ++L+ N + P +
Sbjct: 62 LNNLTQINFSNNQLTDITP--------LKNLT-------KLVDILMNNNQIADITP--LA 104
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176
N + L L L N + P +L NL L L+ N +S +S+LS L+
Sbjct: 105 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-------TISDISALSGLTSLQQ 155
Query: 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG-SIPEEISNLTNLIAIYLGRNKLNG 235
F N + + P A NL+ ++E + + +S S+ +++NL +LIA N+++
Sbjct: 156 LNF-GNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISD 208
Query: 236 SIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNL 295
P+ NQL+ L L L LDL N++ P SG LT L
Sbjct: 209 ITPLGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG-LTKL 262
Query: 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355
+L LG+NQ+++I S L L + +L L+ N P I N L L L NN S +
Sbjct: 263 TELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 319
Query: 356 IPTKIGGLKDLQYLFLEYNRL 376
P + L LQ LF N++
Sbjct: 320 SP--VSSLTKLQRLFFYNNKV 338
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 125
Query: 313 WNLKDILHLNLSSNSFTGPLPLK-------------------IGNFNVLIQLDLSMNNFS 353
NL ++ L LSSN+ + L + N L +LD+S N S
Sbjct: 126 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS 185
Query: 354 GVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+ + + L +L+ L N++ P
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITP 211
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 32/167 (19%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWG 104
+ L NLE + + N++ + P I + L L L+ L NL +L L
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 247
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP---- 160
N S P + +KL L L N S P L L L LN+N L +P
Sbjct: 248 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 303
Query: 161 -----------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLS 196
+S +S +S+ L+ FYNN + + ++ NL+
Sbjct: 304 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 348
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 142/321 (44%), Gaps = 45/321 (14%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L+NL + FS N+L + P LK+L L ++L+ N + P +
Sbjct: 67 LNNLTQINFSNNQLTDITP--------LKNLT-------KLVDILMNNNQIADITP--LA 109
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176
N + L L L N + P +L NL L L+ N +S +S+LS L+
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSN-------TISDISALSGLTSLQQ 160
Query: 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG-SIPEEISNLTNLIAIYLGRNKLNG 235
F N + + P A NL+ ++E + + +S S+ +++NL +LIA N+++
Sbjct: 161 LSF-GNQVTDLKPLA--NLT-TLERLDISSNKVSDISVLAKLTNLESLIAT---NNQISD 213
Query: 236 SIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNL 295
P+ NQL+ L L L LDL N++ P SG LT L
Sbjct: 214 ITPLGILTNLDELSL--NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSG-LTKL 267
Query: 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355
+L LG+NQ+++I S L L + +L L+ N P I N L L L NN S +
Sbjct: 268 TELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324
Query: 356 IPTKIGGLKDLQYLFLEYNRL 376
P + L LQ LF N++
Sbjct: 325 SP--VSSLTKLQRLFFYNNKV 343
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 76 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 130
Query: 313 WNLKDILHLNLSSNSFTGPLPLK-------------------IGNFNVLIQLDLSMNNFS 353
NL ++ L LSSN+ + L + N L +LD+S N S
Sbjct: 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 190
Query: 354 GVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+ + + L +L+ L N++ P
Sbjct: 191 DI--SVLAKLTNLESLIATNNQISDITP 216
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 32/167 (19%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWG 104
+ L NLE + + N++ + P I + L L L+ L NL +L L
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTNLTDLDLAN 252
Query: 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP---- 160
N S P + +KL L L N S P L L L LN+N L +P
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL 308
Query: 161 -----------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLS 196
+S +S +S+ L+ FYNN + + ++ NL+
Sbjct: 309 KNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLT 353
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 513 KRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVF-DLQYRGAFKSFDIE 571
KRF+ EL A++ FS N++GRGGFG VYK R+ DG AVK + + +G F E
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 572 CDMM 575
+M+
Sbjct: 86 VEMI 89
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 513 KRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVF-DLQYRGAFKSFDIE 571
KRF+ EL A++ F N++GRGGFG VYK R+ DG AVK + + +G F E
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 572 CDMM 575
+M+
Sbjct: 78 VEMI 81
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 138/333 (41%), Gaps = 59/333 (17%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWGNNF 107
L+NL + FS N+L + P + N++ L + ++N L NL L L+ N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 123
Query: 108 SGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY------------- 154
+ P + N + L L L N+ S + L +L+ LS +
Sbjct: 124 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLKPLANLTTLE 179
Query: 155 -LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILP-----------------RAIGNLS 196
L S+ K+S +S L+ LE NN + I P + IG L+
Sbjct: 180 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 239
Query: 197 Q--SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXED 254
++ D + N IS P +S LT L + LG N+++ P+A +
Sbjct: 240 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNE 295
Query: 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN 314
NQLE P + L L L L N + P S LT L++L+ +N+++ + S+L N
Sbjct: 296 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFANNKVSDV-SSLAN 350
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDL 347
L +I L+ N + PL N + QL L
Sbjct: 351 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 381
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 75 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 129
Query: 313 WNLKDILHLNLSSNSFTGPLPLK-------------------IGNFNVLIQLDLSMNNFS 353
NL ++ L LSSN+ + L + N L +LD+S N S
Sbjct: 130 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS 189
Query: 354 GVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+ + + L +L+ L N++ P
Sbjct: 190 DI--SVLAKLTNLESLIATNNQISDITP 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 138/333 (41%), Gaps = 59/333 (17%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN---------VRLPNLEELLLWGNNF 107
L+NL + FS N+L + P + N++ L + ++N L NL L L+ N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 108 SGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY------------- 154
+ P + N + L L L N+ S + L +L+ L+ +
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLKPLANLTTLE 175
Query: 155 -LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILP-----------------RAIGNLS 196
L S+ K+S +S L+ LE NN + I P + IG L+
Sbjct: 176 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLA 235
Query: 197 Q--SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXED 254
++ D + N IS P +S LT L + LG N+++ P+A +
Sbjct: 236 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNE 291
Query: 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN 314
NQLE P + L L L L N + P S LT L++L+ +N+++ + S+L N
Sbjct: 292 NQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS--LTKLQRLFFSNNKVSDV-SSLAN 346
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDL 347
L +I L+ N + PL N + QL L
Sbjct: 347 LTNINWLSAGHNQISDLTPL--ANLTRITQLGL 377
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 253 EDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
+NQL P L L L + + N++ P NLTNL L L +NQ+T I L
Sbjct: 71 SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNNQITDI-DPL 125
Query: 313 WNLKDILHLNLSSNSFTGPLPLK-------------------IGNFNVLIQLDLSMNNFS 353
NL ++ L LSSN+ + L + N L +LD+S N S
Sbjct: 126 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVS 185
Query: 354 GVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+ + + L +L+ L N++ P
Sbjct: 186 DI--SVLAKLTNLESLIATNNQISDITP 211
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 8/131 (6%)
Query: 262 PDNLC--GLAA--LFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWNLK 316
PDN GL A + DL +K+ + + + T+L +L L N++ I + W L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 317 DILHLNLSSNSFTGPLPLKI-GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNR 375
+L LNLS N F G + ++ N + L LDLS N+ + GL +L+ L L+ N+
Sbjct: 324 HLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382
Query: 376 LQGSIPNSIGD 386
L+ S+P+ I D
Sbjct: 383 LK-SVPDGIFD 392
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 123/278 (44%), Gaps = 42/278 (15%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVR---------LPNLEELLLWGNNF 107
L NLE++ + N++ + P + N+ L +LY+ + L NL EL L +N
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI 122
Query: 108 SGTIPSFIFNASKLFTLGLEEN-SFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP------ 160
S P + N +K ++L L N + S P + L +L++ ++ + TP
Sbjct: 123 SDISP--LANLTKXYSLNLGANHNLSDLSP--LSNXTGLNYLTVTESKVKDVTPIANLTD 178
Query: 161 ---------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG 211
++ +S L++ L YF Y N + I P + N ++ + ++ N I+
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANXTR-LNSLKIGNNKITD 235
Query: 212 SIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEG-SIPDNLCGLAA 270
P ++NL+ L + +G N++ S A NQ+ S+ +NL L +
Sbjct: 236 LSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNS 291
Query: 271 LFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI 308
LF L N+L G LTNL L+L N +T I
Sbjct: 292 LF---LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDI 326
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 29/187 (15%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPS 113
I NL +L ++ ++N++ + P A L +L + N + P
Sbjct: 173 IANLTDLYSLSLNYNQIEDISPLA---------------SLTSLHYFTAYVNQITDITP- 216
Query: 114 FIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKY 173
+ N ++L +L + N + P +L L WL + N ++S ++++ +
Sbjct: 217 -VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN-------QISDINAVKDLTK 266
Query: 174 LEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKL 233
L+ +N + I + NLSQ + ++N + E I LTNL ++L +N +
Sbjct: 267 LKXLNVGSNQISDI--SVLNNLSQ-LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 234 NGSIPIA 240
P+A
Sbjct: 324 TDIRPLA 330
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 24/125 (19%)
Query: 204 MHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPD 263
+H+ I+ P +L NL +YLG N+L G++P+ + D
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG--------------------VFD 85
Query: 264 NLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNL 323
+L L LDLG N+L A L +L++L++ N+LT +P + L + HL L
Sbjct: 86 SLTQLTV---LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 324 SSNSF 328
N
Sbjct: 143 DQNQL 147
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS--IPSTLWNLKD--ILHLN 322
G ++L +LDL N L F P C + L L L + QL W L + I +L+
Sbjct: 169 GNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLS 228
Query: 323 LSSN--------SFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L++N +F+G LK N L QLDLS NN V L L+YL LEYN
Sbjct: 229 LANNQLLATSESTFSG---LKWTN---LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 375 RLQGSIPNS 383
+Q P S
Sbjct: 283 NIQRLSPRS 291
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 492 KYRKGGKSQLNDANMSSVA---NQKRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHD 548
KY K S +NDA SS R ++L +ATN F LIG G FG VYK + D
Sbjct: 4 KYSKATNS-INDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD 62
Query: 549 GMEAAVK 555
G + A+K
Sbjct: 63 GAKVALK 69
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 577 QYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMT-LKRW-VNDFLPISVMEVVD 634
+Y +GR++ DVYSFG++L E + + EM L W V + ++VD
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVD 270
Query: 635 TNLLSQ 640
NL +
Sbjct: 271 PNLADK 276
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 492 KYRKGGKSQLNDANMSSVA---NQKRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHD 548
KY K S +NDA SS R ++L +ATN F LIG G FG VYK + D
Sbjct: 4 KYSKATNS-INDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD 62
Query: 549 GMEAAVK 555
G + A+K
Sbjct: 63 GAKVALK 69
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 577 QYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMT-LKRW-VNDFLPISVMEVVD 634
+Y +GR++ DVYSFG++L E + + EM L W V + ++VD
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVD 270
Query: 635 TNLLSQ 640
NL +
Sbjct: 271 PNLADK 276
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
L L L L GN+L LTNL++L L NQL S+P +++ L ++ +LNL+ N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 327 SFTGPLPLKI-GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIG 385
LP + L +LDLS N + L L+ L L N+L+ S+P+ +
Sbjct: 144 QLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVF 201
Query: 386 D 386
D
Sbjct: 202 D 202
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 25/187 (13%)
Query: 54 IGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPS 113
I L N+ ++A NKL ++S LK L NL L+L GN ++P+
Sbjct: 59 IQYLPNVRYLALGGNKL--------HDISALK-------ELTNLTYLILTGNQLQ-SLPN 102
Query: 114 FIFNA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCK 172
+F+ + L L L EN F L NL +L+L N L S PK F L+N
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVF-DKLTNLT 160
Query: 173 YLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEI-SNLTNLIAIYLGRN 231
L+ YN LP + + ++D +++ N S+P+ + LT+L I+L N
Sbjct: 161 ELDL--SYNQLQS--LPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215
Query: 232 KLNGSIP 238
+ + P
Sbjct: 216 PWDCTCP 222
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L NL ++ + N+L + P +F+ +L NL EL L N ++P +F
Sbjct: 132 LTNLTYLNLAHNQLQSL-PKGVFD------------KLTNLTELDLSYNQLQ-SLPEGVF 177
Query: 117 NA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLE 175
+ ++L L L +N F L +L+++ L+DN + P + +LS N +
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----K 233
Query: 176 YFGFYNNPLGGILPRA 191
+ G N G + P +
Sbjct: 234 HSGVVRNSAGSVAPDS 249
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 51/165 (30%)
Query: 274 LDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLP 333
L LGGNKL + LTNL L L NQL S+P+ +++
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD------------------- 106
Query: 334 LKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLIXXXXX 393
K+ N L+ L N + L +L YL L +N+LQ S+P + D
Sbjct: 107 -KLTNLKELV---LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFD------- 154
Query: 394 XXXXXXXXGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFS 438
KL +L E+++S+N L+ +P EG F +
Sbjct: 155 ----------------KLTNLTELDLSYNQLQS-LP-EGVFDKLT 181
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 31/211 (14%)
Query: 127 EENSFSGFIPNT--FGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPL 184
E NS I N S++ +++L N YL KL +S+L L Y N L
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 185 GGILPRAIGNLSQSMEDFQMHNCNISGSIPEEI-SNLTNLIAIYLGRNKLNGSIPIAXXX 243
LP + + ++++ + N S+P+ + LTNL + L N+L
Sbjct: 98 QS-LPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQS-------- 147
Query: 244 XXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSN 303
L + D L L +LDL N+L LT L+ L L N
Sbjct: 148 -------------LPKGVFDKLTNLT---ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 304 QLTSIPSTLWN-LKDILHLNLSSNSFTGPLP 333
QL S+P +++ L + ++ L N + P
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
L +L QL LGGNKL LT+L L L +NQL S+P+ +++ L + L L++N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 327 SFTGPLPLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
L G F+ L QL L N V L LQY++L N + P
Sbjct: 111 QLQS---LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 274 LDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNSFTGPL 332
LDL N L LT+L +LYLG N+L S+P+ ++N L + +LNLS+N
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-- 90
Query: 333 PLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGD 386
L G F+ L QL L+ N + L L+ L L N+L+ S+P+ + D
Sbjct: 91 -LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 21/190 (11%)
Query: 4 VELGNLAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEIGN-LHNLEW 62
V G A+ L L+ NSL ++P+ +F +P + N L +L +
Sbjct: 22 VPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80
Query: 63 MAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNA-SKL 121
+ S N+L + P +F+ +L L+EL L N ++P +F+ ++L
Sbjct: 81 LNLSTNQLQSL-PNGVFD------------KLTQLKELALNTNQLQ-SLPDGVFDKLTQL 126
Query: 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYN 181
L L +N F L +L+++ L+DN + P + +LS N ++ G
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN----KHSGVVR 182
Query: 182 NPLGGILPRA 191
N G + P +
Sbjct: 183 NSAGSVAPDS 192
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 212 SIPEEI-SNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCG-LA 269
S+P + LT+L +YLG NKL NQL+ S+P+ + L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLT 100
Query: 270 ALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNSF 328
L +L L N+L LT L+ L L NQL S+P +++ L + ++ L N +
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Query: 329 TGPLP 333
P
Sbjct: 161 DCTCP 165
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 6/141 (4%)
Query: 95 PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY 154
P+LEEL L N S P N L TLGL N F L NL L +++N
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK 115
Query: 155 LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIP 214
+ + L N K LE +N L I RA L+ S+E + CN++
Sbjct: 116 IVILLDYM--FQDLYNLKSLE---VGDNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPT 169
Query: 215 EEISNLTNLIAIYLGRNKLNG 235
E +S+L LI + L +N
Sbjct: 170 EALSHLHGLIVLRLRHLNINA 190
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 263 DNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHL 321
D L +L+L N + P NL NLR L L SN+L IP ++ L ++ L
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 322 NLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
++S N L + L L++ N+ + GL L+ L LE L SIP
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIP 168
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 124 LGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
L L+ENS +TF LR+LE L L+ N + ++ + L + LE F +N
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVGAFNGLPSLNTLELF---DNR 94
Query: 184 LGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISN-LTNLIAIYLGRNKLNGSIPIAXX 242
L + +A LS+ + + + N N SIP N + +L + LG K I A
Sbjct: 95 LTTVPTQAFEYLSK-LRELWLRN-NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 243 XXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGS 302
IP NL L L +L+L GN+L P LT+LRKL+L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 303 NQLTSIPSTLW-NLKDILHLNLSSNSF 328
Q+ +I + +LK + LNLS N+
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 48/182 (26%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNL-- 323
GL +L L+L N+L L+ LR+L+L +N + SIPS +N + + L+L
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 324 -------SSNSFTGPLPLK-----------IGNFNVLI---QLDLSMNNFSGVIPTKIGG 362
S +F G + L+ I N L+ +L+LS N + P G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 363 LKDLQYLFLEYNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFN 422
L L+ L+L + ++ N+ DL L+E+N+S N
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLK------------------------SLEELNLSHN 236
Query: 423 NL 424
NL
Sbjct: 237 NL 238
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 9 LAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEIGNLHNLEWMA-FSF 67
L++L++LWL NN + +IPS F ++G L LE+++ +F
Sbjct: 106 LSKLRELWLRNNPIE-SIPSYAFNRVPSLRR------------LDLGELKRLEYISEAAF 152
Query: 68 NKLVGV--VPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLG 125
LV + + + N+ + +L L LEEL L GN P + L L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPNL----TALVRLEELELSGNRLDLIRPGSFQGLTSLRKLW 208
Query: 126 LEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157
L + N F L++LE L+L+ N L S
Sbjct: 209 LMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 294 NLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFS 353
++ +LYL NQ T +P L N K + ++LS+N + N L+ L LS N
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 354 GVIPTKIGGLKDLQYLFLEYN 374
+ P GLK L+ L L N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGN 112
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSF--LSSLSN 170
N ++L TL L N P TF L++L LSL+ N + S P+ +F LS+LS+
Sbjct: 76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSH 130
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Query: 124 LGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
L L+ENS +TF LR+LE L L+ N + ++ + L + LE F +N
Sbjct: 40 LNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVGAFNGLPSLNTLELF---DNR 94
Query: 184 LGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISN-LTNLIAIYLGRNKLNGSIPIAXX 242
L + +A LS+ + + + N N SIP N + +L + LG K I A
Sbjct: 95 LTTVPTQAFEYLSK-LRELWLRN-NPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAF 152
Query: 243 XXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGS 302
IP NL L L +L+L GN+L P LT+LRKL+L
Sbjct: 153 EGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
Query: 303 NQLTSIPSTLW-NLKDILHLNLSSNSF 328
Q+ +I + +LK + LNLS N+
Sbjct: 212 AQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 48/182 (26%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNL-- 323
GL +L L+L N+L L+ LR+L+L +N + SIPS +N + + L+L
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGE 140
Query: 324 -------SSNSFTGPLPLK-----------IGNFNVLI---QLDLSMNNFSGVIPTKIGG 362
S +F G + L+ I N L+ +L+LS N + P G
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 363 LKDLQYLFLEYNRLQGSIPNSIGDLIXXXXXXXXXXXXXGTIPISLEKLLDLKEINVSFN 422
L L+ L+L + ++ N+ DL L+E+N+S N
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLK------------------------SLEELNLSHN 236
Query: 423 NL 424
NL
Sbjct: 237 NL 238
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 9 LAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIP----YEIGNLHNLEWMA 64
L++L++LWL NN + +IPS F +P ++G L LE+++
Sbjct: 106 LSKLRELWLRNNPIE-SIPSYAF----------------NRVPSLRRLDLGELKRLEYIS 148
Query: 65 -FSFNKLVGV--VPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKL 121
+F LV + + + N+ + +L L LEEL L GN P + L
Sbjct: 149 EAAFEGLVNLRYLNLGMCNLKDIPNL----TALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Query: 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157
L L + N F L++LE L+L+ N L S
Sbjct: 205 RKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMS 240
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW 313
DNQ+ P L L +LDL N+L LT L +L L NQL SIP +
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Query: 314 -NLKDILHLNLSSNSF 328
NLK + H+ L +N +
Sbjct: 107 DNLKSLTHIWLLNNPW 122
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 69 KLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEE 128
K + VPT I +T + LYL++ ++ LE P ++L L L+
Sbjct: 27 KSLASVPTGI--PTTTQVLYLYDNQITKLE-------------PGVFDRLTQLTRLDLDN 71
Query: 129 NSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
N + F L L LSLNDN L S P+ +F N K L + NNP
Sbjct: 72 NQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAF----DNLKSLTHIWLLNNP 121
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNL------KDILHLN 322
++L +L+L N++ F P C + L L+L + QL PS L I +L+
Sbjct: 176 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG--PSLTEKLCLELANTSIRNLS 233
Query: 323 LS-----SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQ 377
LS + S T L LK N L LDLS NN + V L L+Y FLEYN +Q
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTN---LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
Query: 378 GSIPNSIGDL 387
+S+ L
Sbjct: 291 HLFSHSLHGL 300
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 69 KLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEE 128
K + VPT I +T + LYL++ R+ LE P ++L L L+
Sbjct: 19 KSLASVPTGI--PTTTQVLYLYDNRITKLE-------------PGVFDRLTQLTRLDLDN 63
Query: 129 NSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
N + F L L LSLNDN L S P+ +F N + L + NNP
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAF----DNLRSLTHIWLLNNP 113
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW 313
DN++ P L L +LDL N+L LT L +L L NQL SIP +
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 314 -NLKDILHLNLSSNSF 328
NL+ + H+ L +N +
Sbjct: 99 DNLRSLTHIWLLNNPW 114
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW 313
DNQ+ P L L +LDL N+L LT L +L L NQL SIP +
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 314 -NLKDILHLNLSSNSF 328
NLK + H+ L +N +
Sbjct: 99 DNLKSLTHIWLLNNPW 114
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 69 KLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEE 128
K + VPT I +T + LYL++ ++ LE P ++L L L+
Sbjct: 19 KSLASVPTGI--PTTTQVLYLYDNQITKLE-------------PGVFDRLTQLTRLDLDN 63
Query: 129 NSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
N + F L L LSLNDN L S P+ +F N K L + NNP
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAF----DNLKSLTHIWLLNNP 113
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNL------KDILHLN 322
++L +L+L N++ F P C + L L+L + QL PS L I +L+
Sbjct: 181 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG--PSLTEKLCLELANTSIRNLS 238
Query: 323 LS-----SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQ 377
LS + S T L LK N L LDLS NN + V L L+Y FLEYN +Q
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTN---LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
Query: 378 GSIPNSIGDL 387
+S+ L
Sbjct: 296 HLFSHSLHGL 305
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 16/130 (12%)
Query: 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNL------KDILHLN 322
++L +L+L N++ F P C + L L+L + QL PS L I +L+
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG--PSLTEKLCLELANTSIRNLS 228
Query: 323 LS-----SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQ 377
LS + S T L LK N L LDLS NN + V L L+Y FLEYN +Q
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTN---LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
Query: 378 GSIPNSIGDL 387
+S+ L
Sbjct: 286 HLFSHSLHGL 295
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLP-----------NLEELLLWGN 105
L L+++ N L + ++ L L+LH R+P +L+ LLL N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 106 NFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDN 153
+ + P + +L TL L N+ S LR+L++L LNDN
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 276 LGGNKLCGFIPACS-GNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNSFTGPL- 332
L GN++ ++PA S + NL L+L SN L I + + L + L+LS N+ +
Sbjct: 38 LHGNRI-SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVD 96
Query: 333 PLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDL 387
P L L L + P GL LQYL+L+ N LQ N+ DL
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 79/210 (37%), Gaps = 25/210 (11%)
Query: 166 SSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIA 225
+S +C+ L ++N L GI A L+ + N + P L +L
Sbjct: 49 ASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHT 108
Query: 226 IYLGRNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFI 285
++L R L P +DN L+ ++PDN F+ DLG
Sbjct: 109 LHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNT------FR-DLG-------- 152
Query: 286 PACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNSFTGPLPLKIGNFNVLIQ 344
NL L+L N++ S+P + L + L L N P + L+
Sbjct: 153 --------NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMT 204
Query: 345 LDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L L NN S + + L+ LQYL L N
Sbjct: 205 LYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Query: 111 IPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSN 170
+P I ++L L L EN N+F LR+LE L L+ N++ T ++ + L+N
Sbjct: 58 VPDGISTNTRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGAFNGLAN 113
Query: 171 CKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISN-LTNLIAIYLG 229
LE F +N L I A LS+ +++ + N N SIP N + +L + LG
Sbjct: 114 LNTLELF---DNRLTTIPNGAFVYLSK-LKELWLRN-NPIESIPSYAFNRIPSLRRLDLG 168
Query: 230 RNKLNGSIPIAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACS 289
K I IP NL L L +LDL GN L P
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 290 GNLTNLRKLYLGSNQLTSIPSTLW-NLKDILHLNLSSNSFT 329
L +L+KL++ +Q+ I + NL+ ++ +NL+ N+ T
Sbjct: 228 QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GLAAL L L N L +L NL L+L N+++S+P + L + L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 326 NSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
N P + L+ L L NN S + + L+ LQYL L N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 269 AALFQLDLGGNKLCGFIPACS-GNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
AA ++ L GN++ +PA S NL L+L SN L I + + L + L+LS N
Sbjct: 32 AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 327 SFTGPL-PLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIG 385
+ + P L L L + P GL LQYL+L+ N LQ ++
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 386 DL 387
DL
Sbjct: 151 DL 152
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GLAAL L L N L +L NL L+L N+++S+P + L + L L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 326 NSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
N P + L+ L L NN S + + L+ LQYL L N
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 269 AALFQLDLGGNKLCGFIPACS-GNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
AA ++ L GN++ +PA S NL L+L SN L I + + L + L+LS N
Sbjct: 31 AASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 89
Query: 327 SFTGPL-PLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIG 385
+ + P L L L + P GL LQYL+L+ N LQ ++
Sbjct: 90 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 149
Query: 386 DL 387
DL
Sbjct: 150 DL 151
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNL-----------EELLLWGN 105
L L W+ +N+L + +++ L +L L N +L +L ++L L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157
++PS +F+ +KL L L N F L NL+ LSL+ N L S
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
L L L L N+L +LT L KLYLG NQL S+PS +++ L + L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 327 SFTGPLPLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379
+ G F+ L L LS N V L LQ + L N+ S
Sbjct: 142 QLQS---IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L L+L N+L +LT L L L +NQL S+P +++ L + L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 326 NSFTGPLPLKI-GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
N LP + L +L L+ N + L +LQ L L N+LQ S+P+
Sbjct: 117 NQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 385 GD 386
D
Sbjct: 175 FD 176
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNL-----------EELLLWGN 105
L L W+ +N+L + +++ L +L L N +L +L ++L L GN
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157
++PS +F+ +KL L L N F L NL+ LSL+ N L S
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
L L L L N+L +LT L KLYLG NQL S+PS +++ L + L L++N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 327 SFTGPLPLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379
+ G F+ L L LS N V L LQ + L N+ S
Sbjct: 142 QLQS---IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L L+L N+L +LT L L L +NQL S+P +++ L + L L
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 326 NSFTGPLPLKI-GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
N LP + L +L L+ N + L +LQ L L N+LQ S+P+
Sbjct: 117 NQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGA 174
Query: 385 GD 386
D
Sbjct: 175 FD 176
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 23/102 (22%)
Query: 273 QLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPL 332
+L L N++ P +L NL++LY SN+LT+IP+ +++
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD------------------ 78
Query: 333 PLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L QLDL+ N+ + LK L +++L N
Sbjct: 79 -----KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW 313
+NQ+ P L L QL NKL LT L +L L N L SIP +
Sbjct: 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101
Query: 314 -NLKDILHLNLSSNSF 328
NLK + H+ L +N +
Sbjct: 102 DNLKSLTHIYLYNNPW 117
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 90 HNVRLPNL------EELLLWGNN--FSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGS 141
N+RL ++ ++ LW NN + P + L L N + F
Sbjct: 20 QNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 142 LRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP 183
L L L LNDN+L S P+ +F N K L + YNNP
Sbjct: 80 LTQLTQLDLNDNHL-KSIPRGAF----DNLKSLTHIYLYNNP 116
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 94 LPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDN 153
L + EL L GN S I + TL L + P L NL+ L L+ N
Sbjct: 90 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLN 145
Query: 154 YLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSI 213
+T+ +P L+ L+N L+Y NN + + P A NLS+ + + + IS
Sbjct: 146 QITNISP----LAGLTN---LQYLSIGNNQVNDLTPLA--NLSK-LTTLRADDNKISDIS 195
Query: 214 PEEISNLTNLIAIYLGRNKLNGSIPIA 240
P +++L NLI ++L N+++ P+A
Sbjct: 196 P--LASLPNLIEVHLKDNQISDVSPLA 220
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 265 LCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLS 324
+ GL ++ LDL ++ P L+NL+ LYL NQ+T+I S L L ++ +L++
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLAG--LSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIG 165
Query: 325 SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+N PL N + L L N S + P + L +L + L+ N++ P
Sbjct: 166 NNQVNDLTPL--ANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 527 FSENNLIGRGGFGSVYKAR-IHDGMEAAVKVFD 558
F NL+G+G F VY+A IH G+E A+K+ D
Sbjct: 13 FKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID 45
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 254 DNQLEGSIPDNLCG-LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL 312
DN+L D L G L L +L+L N+L G P +++++L LG N++ I + +
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97
Query: 313 W-NLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNF 352
+ L + LNL N + +P + N L L+L+ N F
Sbjct: 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%)
Query: 93 RLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLND 152
RLP+L +L L N +G P+ AS + L L EN F L L+ L+L D
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 153 NYLTSSTP 160
N ++ P
Sbjct: 112 NQISCVMP 119
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 55 GNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSF 114
G L +L + N+L G+ P A S ++ L L ++ + + G
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLG---------- 100
Query: 115 IFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDN 153
+L TL L +N S +P +F L +L L+L N
Sbjct: 101 ---LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 15/211 (7%)
Query: 121 LFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFY 180
L+ L L N S F LR L+ L ++ N+L P L SSL + +
Sbjct: 80 LYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR------IH 131
Query: 181 NNPLGGILPRAIGNLSQSMEDFQMHNCNI--SGSIPEEISNLTNLIAIYLGRNKLNGSIP 238
+N + + P+ + + ++M +M + SG P L L + + KL G
Sbjct: 132 DNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG--- 186
Query: 239 IAXXXXXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKL 298
I + N+++ ++L + L++L LG N++ L LR+L
Sbjct: 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246
Query: 299 YLGSNQLTSIPSTLWNLKDILHLNLSSNSFT 329
+L +N+L+ +P+ L +LK + + L +N+ T
Sbjct: 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 263 DNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLN 322
D+ GL L+ L L NK+ L L+KLY+ N L IP L + ++ L
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELR 129
Query: 323 LSSNS--------FTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
+ N F+G + N N + + N SG P GLK L YL +
Sbjct: 130 IHDNRIRKVPKGVFSG-----LRNMNCIEMGGNPLEN-SGFEPGAFDGLK-LNYLRISEA 182
Query: 375 RLQG---SIPNSIGDL 387
+L G +P ++ +L
Sbjct: 183 KLTGIPKDLPETLNEL 198
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 515 FTYLELFQATNGFSEN------NLIGRGGFGSVYKARIHDGMEAAVK---VFDLQYRGAF 565
F++ EL TN F E N +G GGFG VYK +++ A K + D+
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 566 KSFDIECDMMKQYGREGRV-----STNGD 589
+ FD E +M + E V S++GD
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD 103
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 582 GRVSTNGDVYSFGIMLMETFTRKKPTDE 609
G ++ D+YSFG++L+E T DE
Sbjct: 209 GEITPKSDIYSFGVVLLEIITGLPAVDE 236
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 515 FTYLELFQATNGFSEN------NLIGRGGFGSVYKARIHDGMEAAVK---VFDLQYRGAF 565
F++ EL TN F E N +G GGFG VYK +++ A K + D+
Sbjct: 15 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 566 KSFDIECDMMKQYGREGRV-----STNGD 589
+ FD E +M + E V S++GD
Sbjct: 75 QQFDQEIKVMAKCQHENLVELLGFSSDGD 103
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 582 GRVSTNGDVYSFGIMLMETFTRKKPTDE 609
G ++ D+YSFG++L+E T DE
Sbjct: 209 GEITPKSDIYSFGVVLLEIITGLPAVDE 236
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 515 FTYLELFQATNGFSEN------NLIGRGGFGSVYKARIHDGMEAAVK---VFDLQYRGAF 565
F++ EL TN F E N +G GGFG VYK +++ A K + D+
Sbjct: 9 FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 68
Query: 566 KSFDIECDMMKQYGREGRV-----STNGD 589
+ FD E +M + E V S++GD
Sbjct: 69 QQFDQEIKVMAKCQHENLVELLGFSSDGD 97
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 582 GRVSTNGDVYSFGIMLMETFTRKKPTDE 609
G ++ D+YSFG++L+E T DE
Sbjct: 203 GEITPKSDIYSFGVVLLEIITGLPAVDE 230
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFD 558
N FS + +IGRGGFG VY R D G A+K D
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFD 558
N FS + +IGRGGFG VY R D G A+K D
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 265 LCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLS 324
+ GL ++ LDL ++ P L+NL+ LYL NQ+T+I S L L ++ +L++
Sbjct: 103 IAGLQSIKTLDLTSTQITDVTPLAG--LSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIG 159
Query: 325 SNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
+ + PL N + L L N S + P + L +L + L+ N++ P
Sbjct: 160 NAQVSDLTPL--ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 93 RLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLND 152
L + EL L GN S I + TL L + P L NL+ L L+
Sbjct: 83 NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDL 138
Query: 153 NYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGS 212
N +T+ +P L+ L+N L+Y N + + P A NLS+ + + + IS
Sbjct: 139 NQITNISP----LAGLTN---LQYLSIGNAQVSDLTPLA--NLSK-LTTLKADDNKISDI 188
Query: 213 IPEEISNLTNLIAIYLGRNKLNGSIPIA 240
P +++L NLI ++L N+++ P+A
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSPLA 214
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 585 STNGDVYSFGIMLMETFTRKKPTDEV 610
S DV+S+GI+L E TR+KP DE+
Sbjct: 181 SEKCDVFSWGIILWEVITRRKPFDEI 206
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 585 STNGDVYSFGIMLMETFTRKKPTDEV 610
S DV+S+GI+L E TR+KP DE+
Sbjct: 182 SEKCDVFSWGIILWEVITRRKPFDEI 207
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFD 558
N FS + +IGRGGFG VY R D G A+K D
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 223
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFD 558
N FS + +IGRGGFG VY R D G A+K D
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLD 222
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 86/206 (41%), Gaps = 31/206 (15%)
Query: 127 EENSFSGFIPNT--FGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPL 184
E NS I N S++ +++L N YL KL +S+L L Y N L
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQL 97
Query: 185 GGILPRAIGNLSQSMEDFQMHNCNISGSIPEEI-SNLTNLIAIYLGRNKLNGSIPIAXXX 243
LP + + ++++ + N S+P+ + LTNL +YL N+L
Sbjct: 98 QS-LPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLYLYHNQLQS-------- 147
Query: 244 XXXXXXXXXEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSN 303
L + D L L +LDL N+L LT L++L L N
Sbjct: 148 -------------LPKGVFDKLTNLT---RLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 304 QLTSIPSTLWN-LKDILHLNLSSNSF 328
QL S+P +++ L + H+ L +N +
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 274 LDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLP 333
L LGGNKL + LTNL L L NQL S+P+ +++
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD------------------- 106
Query: 334 LKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLIXXXXX 393
K+ N L+ L N + L +L YL+L +N+LQ S+P + D +
Sbjct: 107 -KLTNLKELV---LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTR 161
Query: 394 XXXXXXXXGTIPISL-EKLLDLKEINVSFNNLEGEIPREGPFRNFSA 439
++P + +KL LK+++++ N L+ +P +G F ++
Sbjct: 162 LDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VP-DGVFDRLTS 206
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFN-VSTLKSLYLHN-----------VRLPNLEELLLWG 104
L NL ++ + N+L + P +F+ ++ LK L L +L NL L L+
Sbjct: 84 LTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 105 NNFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157
N ++P +F+ + L L L+ N F L L+ LSLNDN L S
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 261 IPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILH 320
I N+ L +L L GN L +PA NL+NLR L L N+LTS+P+ L + + +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 321 LNLSSNSFTGPLPLKIGN 338
N T LP + GN
Sbjct: 298 FYFFDNMVTT-LPWEFGN 314
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 1 EIPVELGNLAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEIGNLHNL 60
E+P E+ NL+ L+ L L +N LT ++P+ + T +P+E GNL NL
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNL 318
Query: 61 EWMAFSFNKL 70
+++ N L
Sbjct: 319 QFLGVEGNPL 328
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNS 327
L L L L NK+ P L L +LYL NQL +P + K + L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132
Query: 328 FTGPLPLKIGNFNVLIQLDLSMNNF--SGVIPTKIGGLKDLQYL 369
T N +I ++L N SG+ G+K L Y+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 95 PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY 154
P+L EL L GN + + + + L LGL NS S + + +L L LN+N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 155 LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGI 187
L + L++ KY++ +NN + I
Sbjct: 252 L------VKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 4/104 (3%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNS 327
L L L L NK+ P L L +LYL NQL +P + K + L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132
Query: 328 FTGPLPLKIGNFNVLIQLDLSMNNF--SGVIPTKIGGLKDLQYL 369
T N +I ++L N SG+ G+K L Y+
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 95 PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY 154
P+L EL L GN + + + + L LGL NS S + + +L L LN+N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251
Query: 155 LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGI 187
L + L++ KY++ +NN + I
Sbjct: 252 L------VKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 263 DNLCGLAA-----LFQLDLGGN-KLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLK 316
+NLC ++A L L + GN K C NL NLR+L L + + + L+
Sbjct: 314 ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373
Query: 317 DILHLNLSSNSFTGPLPLKIGNFNVLIQLDL 347
++ HL + S+ PL LK F QL+L
Sbjct: 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 521 FQATNGFSENNLIGRGGFGSVYKARIHDG--MEAAVKVFDLQYRGAFKSFDIECDMMKQY 578
Q T+G+ IG G + SV K IH ME AVK+ D R + E +++ +Y
Sbjct: 18 IQFTDGYEVKEDIGVGSY-SVCKRCIHKATNMEFAVKIIDKSKRDPTE----EIEILLRY 72
Query: 579 GREGRVSTNGDVYSFG 594
G+ + T DVY G
Sbjct: 73 GQHPNIITLKDVYDDG 88
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLW- 313
NQ+ P L L L+L N+L LT L L L NQL SIP ++
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 314 NLKDILHLNLSSNSF 328
NLK + H+ L +N +
Sbjct: 110 NLKSLTHIYLFNNPW 124
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIG 337
G+ C CS N+ + R LT IP+ L + I + L N+ P
Sbjct: 1 GSLHCPAACTCSNNIVDCR-----GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFS 53
Query: 338 NFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
+ L ++DLS N S + P GL+ L L L N++ +P S+
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIG 337
G+ C CS N+ + R LT IP+ L + I + L N+ P
Sbjct: 1 GSLHCPAACTCSNNIVDCR-----GKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFS 53
Query: 338 NFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSI 384
+ L ++DLS N S + P GL+ L L L N++ +P S+
Sbjct: 54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 532 LIGRGGFGSVYKAR-IHDGMEAAVKVFDLQYRGAFKSFDIECDMMKQYGREGRVST 586
L+G G +G VYK R + G AA+KV D+ + E +M+K+Y ++T
Sbjct: 31 LVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIAT 85
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 582 GRVSTNGDVYSFGIMLMETFT 602
GR S+ DV+SFGI+L ETF+
Sbjct: 290 GRYSSESDVWSFGILLWETFS 310
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 582 GRVSTNGDVYSFGIMLMETFT 602
GR S+ DV+SFGI+L ETF+
Sbjct: 290 GRYSSESDVWSFGILLWETFS 310
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 18/184 (9%)
Query: 210 SGSIPEEISNLTNLIAIYLGRNKLNGSIPIAXXXXXXXXXXXXED--NQLEGSIPDNLCG 267
+ S+ + S L L + L RN L +A + N L D C
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425
Query: 268 LA-ALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSN 326
A ++ L+L N L G + C ++ L L +N++ SIP + +L+ + LN++SN
Sbjct: 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483
Query: 327 SFTGPLPLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNS 383
+ G F+ L L L N + P ++YL N+ G + NS
Sbjct: 484 QLKS---VPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 533
Query: 384 IGDL 387
G +
Sbjct: 534 AGSV 537
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 94 LPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDN 153
LP ++L NN +IP + + L L + N F L +L+++ L+DN
Sbjct: 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Query: 154 YLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILP 189
+ P + +LS N ++ G N G + P
Sbjct: 508 PWDCTCPGIRYLSEWIN----KHSGVVRNSAGSVAP 539
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 515 FTYLELFQATNGFSEN------NLIGRGGFGSVYKARIHDGMEAAVK---VFDLQYRGAF 565
F++ EL TN F E N G GGFG VYK +++ A K + D+
Sbjct: 6 FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 65
Query: 566 KSFDIECDMMKQYGREGRV-----STNGD 589
+ FD E + + E V S++GD
Sbjct: 66 QQFDQEIKVXAKCQHENLVELLGFSSDGD 94
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 582 GRVSTNGDVYSFGIMLMETFTRKKPTDE 609
G ++ D+YSFG++L+E T DE
Sbjct: 200 GEITPKSDIYSFGVVLLEIITGLPAVDE 227
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 30/158 (18%)
Query: 94 LPNLEELLLWGNNFSGTIP-SFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLND 152
LPNL L L N + P ++ N +KLF G N + P +L+NL WL L++
Sbjct: 65 LPNLTSLNLSNNQITDISPIQYLPNVTKLFLNG---NKLTDIKP--LANLKNLGWLFLDE 119
Query: 153 NYLTSSTPK---------------LSFLSSLSNCKYLEYFGFYNNPLGGI--LPRAIGNL 195
N + + +S ++ L + LE NN + I L R
Sbjct: 120 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 179
Query: 196 SQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKL 233
+ S+ED Q IS +P ++ LT L +YL +N +
Sbjct: 180 TLSLEDNQ-----ISDIVP--LAGLTKLQNLYLSKNHI 210
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 152 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 208
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 209 HISDL--RALAGLKNLDVLEL 227
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L +L L GN+L P L KL L +NQLT +P+ L N L+++ L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 326 NSF 328
NS
Sbjct: 182 NSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L +L L GN+L P L KL L +NQLT +P+ L N L+++ L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 326 NSF 328
NS
Sbjct: 182 NSL 184
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 291 NLTNLRKLYLGSNQL-TSIPSTLWNLKDILHLNLSSNSFTG------PLPLKIGNFNVLI 343
NL LR L L L TS L L+D+ HLNL NSF L +G+ +LI
Sbjct: 422 NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILI 481
Query: 344 QLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDL 387
LS N + GL+++ +L L +N L G +++ L
Sbjct: 482 ---LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 497 GKSQLNDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
G + ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 497 GKSQLNDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
G + ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 497 GKSQLNDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
G + ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMMKQYGREGRVS 585
+++ +IG G FG VY+A++ D E LQ + AFK+ +++ +M++ V
Sbjct: 21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGK-AFKNRELQ--IMRKLDHCNIVR 77
Query: 586 TNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHF 645
YS G KK DEV+ V D++P +V V +H+
Sbjct: 78 LRYFFYSSG--------EKK--DEVYLN------LVLDYVPATVYRVA---------RHY 112
Query: 646 TTKEQFMKVIDANL 659
+ +Q + VI L
Sbjct: 113 SRAKQTLPVIYVKL 126
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L +L L GN+L P L KL L +NQLT +P+ L N L+++ L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 326 NSF 328
NS
Sbjct: 182 NSL 184
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 532 LIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAF 565
LIGRG +G+VYK + D AVKVF R F
Sbjct: 20 LIGRGRYGAVYKGSL-DERPVAVKVFSFANRQNF 52
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSS 325
GL L +L L GN+L P L KL L +NQLT +P+ L N L+++ L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 326 NSF 328
NS
Sbjct: 182 NSL 184
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSS 325
GL L L L GN + F P LT+L L +L S+ S + L + LN++
Sbjct: 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137
Query: 326 NSF-TGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYL 369
N + LP N L+ +DLS N + + DLQ+L
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI------TVNDLQFL 176
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSS 325
GL L L L GN + F P LT+L L +L S+ S + L + LN++
Sbjct: 73 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 132
Query: 326 NSF-TGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYL 369
N + LP N L+ +DLS N + + DLQ+L
Sbjct: 133 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI------TVNDLQFL 171
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 531 NLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMMKQYGRE 581
LIG+G FG VY R H E A+++ D++ K+F E +Q E
Sbjct: 39 ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHE 89
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 12/129 (9%)
Query: 53 EIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLH-NVR---------LPNLEELLL 102
+ LH L+ F+ +L + + ++ L L L N+ L NLE +
Sbjct: 118 HLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIE- 176
Query: 103 WGNNFSGTIPSFIF-NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPK 161
+G+N +P IF KL L L N F L +L+ + L+ N S P+
Sbjct: 177 FGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
Query: 162 LSFLSSLSN 170
+ +LS N
Sbjct: 237 IDYLSRWLN 245
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSN 326
L L ++ G NKL G + L++L L SNQL S+P +++ L + + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 327 SFTGPLP 333
+ P
Sbjct: 229 PWDCSCP 235
>pdb|2QR7|A Chain A, 2.0a X-Ray Structure Of C-Terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2: Se-Met Derivative
Length = 342
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 521 FQATNGFSENNLIGRGGFGSVYKARIHDGM--EAAVKVFDLQYRGAFKSFDIECDMMKQY 578
Q T+G+ IG G + SV K IH E AVK+ D R + E +++ +Y
Sbjct: 18 IQFTDGYEVKEDIGVGSY-SVCKRCIHKATNXEFAVKIIDKSKRDPTE----EIEILLRY 72
Query: 579 GREGRVSTNGDVYSFG 594
G+ + T DVY G
Sbjct: 73 GQHPNIITLKDVYDDG 88
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 131 FSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPR 190
+S IP+ L L+WLSL DN S S S KY + NPL I +
Sbjct: 240 WSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREI-DK 298
Query: 191 AIGNLSQSMEDFQMHNC 207
+G L ++ ++H C
Sbjct: 299 TVGQLMDGLKQLRLHRC 315
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 131 FSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPR 190
+S IP+ L L+WLSL DN S S S KY + NPL I +
Sbjct: 240 WSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREI-DK 298
Query: 191 AIGNLSQSMEDFQMHNC 207
+G L ++ ++H C
Sbjct: 299 TVGQLMDGLKQLKLHRC 315
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 131 FSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPR 190
+S IP+ L L+WLSL DN S S S KY + NPL I +
Sbjct: 275 WSVSIPHERRILTILQWLSLPDNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREI-DK 333
Query: 191 AIGNLSQSMEDFQMHNC 207
+G L ++ ++H C
Sbjct: 334 TVGQLMDGLKQLRLHRC 350
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 583 RVSTNGDVYSFGIMLMETFTRKKP 606
R +T DV+SFG++L E TR P
Sbjct: 204 RFTTKSDVWSFGVLLWELLTRGAP 227
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 527 FSENNLIGRGGFGSVYKAR-IHDGMEAA---VKVFDLQYRGAFKSFDIECDMMKQ 577
F IGRG F VY+A + DG+ A V++FDL A E D++KQ
Sbjct: 34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ 88
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLNLSSNS 327
++ +L+L NKL LT L KL L NQ+ S+P +++ L + L L N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 328 FTGPLPLKIGNFNVLIQLD---LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381
L G F+ L QL L N V L LQ ++L N S P
Sbjct: 88 LQS---LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 50 IPYEI-GNLHNLEWMAFSFNKLVGVVPTAIFN-VSTLKSLYLHNVRLPNLEELLLWGNNF 107
+P+ + L L ++ S N+ + +P +F+ ++ L LYLH +L +L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSL---------- 91
Query: 108 SGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLS 166
P+ +F+ ++L L L+ N F L +L+ + L+ N S P++ +LS
Sbjct: 92 ----PNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 147
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 580 REGRVSTNGDVYSFGIMLMETFT 602
RE + ST DV+SFGI+L E ++
Sbjct: 172 REKKFSTKSDVWSFGILLWEIYS 194
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 533 IGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575
+G G FG VYKA+ + + AA KV D + + + +E D++
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 580 REGRVSTNGDVYSFGIMLMETFT 602
RE + ST DV+SFGI+L E ++
Sbjct: 187 REKKFSTKSDVWSFGILLWEIYS 209
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 256 QLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWN 314
Q++G++P L LDL N+L +P L L L + N+LTS+P L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L ++ L L N P + L +L L+ NN + + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 375 RL 376
L
Sbjct: 183 SL 184
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRL-----------PNLEELLLWGN 105
L L + SFN+L + A+ + L+ LYL L P LE+L L N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGS 141
N + +P+ + N L TL L+ENS FGS
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 533 IGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575
+G G FG VYKA+ + + AA KV D + + + +E D++
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 533 IGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575
+G G FG VYKA+ + + AA KV D + + + +E D++
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 88
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 580 REGRVSTNGDVYSFGIMLMETFT 602
RE + ST DV+SFGI+L E ++
Sbjct: 359 REKKFSTKSDVWSFGILLWEIYS 381
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 256 QLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWN 314
Q++G++P L LDL N+L +P L L L + N+LTS+P L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L ++ L L N P + L +L L+ NN + + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 375 RL 376
L
Sbjct: 183 SL 184
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRL-----------PNLEELLLWGN 105
L L + SFN+L + A+ + L+ LYL L P LE+L L N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGS 141
N + +P+ + N L TL L+ENS FGS
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 258 EGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN 314
E +PD L L LDL +L P +L++L+ L + SNQL S+P +++
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 115 IFNA-SKLFTLGLEENSFS-GFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCK 172
IFN S L L + NSF F+P+ F LRNL +L L+ L +P + +SLS+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP--TAFNSLSS-- 495
Query: 173 YLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPE 215
L+ +N L + P I + S++ +H S P
Sbjct: 496 -LQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 256 QLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWN 314
Q++G++P L LDL N+L +P L L L + N+LTS+P L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L ++ L L N P + L +L L+ NN + + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 375 RL 376
L
Sbjct: 183 SL 184
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRL-----------PNLEELLLWGN 105
L L + SFN+L + A+ + L+ LYL L P LE+L L N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGS 141
N + +P+ + N L TL L+ENS FGS
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 595 IMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVV--------DTNLLSQEDKHFT 646
++++ T K PTD +++ W N L SV + D +L++ EDK +
Sbjct: 212 VVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVS 271
Query: 647 TKEQFMKVIDANLLTREDNYF 667
KE F D L+ ED Y
Sbjct: 272 VKEIFRLQRDDELVQAEDKYL 292
>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
pdb|2WNT|B Chain B, Crystal Structure Of The Human Ribosomal Protein S6 Kinase
Length = 330
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 517 YLELFQATNGFSENNLIGRGGFGSVYKARIHDG--MEAAVKVFDLQYRGAFKSFDIECDM 574
Y + ++G+ IG G + S K +H ME AVKV D R + E ++
Sbjct: 19 YFQSMVFSDGYVVKETIGVGSY-SECKRCVHKATNMEYAVKVIDKSKRDPSE----EIEI 73
Query: 575 MKQYGREGRVSTNGDVYSFG 594
+ +YG+ + T DVY G
Sbjct: 74 LLRYGQHPNIITLKDVYDDG 93
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 494 RKGGKSQLNDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEA 552
R + ND + + +A K LE + + L+G GGFGSVY R+ D +
Sbjct: 17 RGSHMAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPV 71
Query: 553 AVK 555
A+K
Sbjct: 72 AIK 74
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 595 IMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVV--------DTNLLSQEDKHFT 646
++++ T K PTD +++ W N L SV + D +L++ EDK +
Sbjct: 212 VVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVS 271
Query: 647 TKEQFMKVIDANLLTREDNYF 667
KE F D L+ ED Y
Sbjct: 272 VKEIFRLQRDDELVQAEDKYL 292
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 256 QLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWN 314
Q++G++P L LDL N+L +P L L L + N+LTS+P L
Sbjct: 72 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 123
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L ++ L L N P + L +L L+ NN + + + GL++L L L+ N
Sbjct: 124 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
Query: 375 RL 376
L
Sbjct: 184 SL 185
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRL-----------PNLEELLLWGN 105
L L + SFN+L + A+ + L+ LYL L P LE+L L N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGS 141
N + +P+ + N L TL L+ENS FGS
Sbjct: 160 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 195
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 33 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 19 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 18 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 18 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 19 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 19 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 132 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 188
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 189 HISDL--RALAGLKNLDVLEL 207
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 129 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 185
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 186 HISDL--RALAGLKNLDVLEL 204
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 19 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 18 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
pdb|3RNY|B Chain B, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain
Length = 346
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 524 TNGFSENNLIGRGGFGSVYKARIHDG--MEAAVKVFDLQYRGAFKSFDIECDMMKQYGRE 581
++G+ IG G + + +H ME AVKV D R + E +++ +YG+
Sbjct: 26 SDGYVVKETIGVGSYSECKRC-VHKATNMEYAVKVIDKSKRDPSE----EIEILLRYGQH 80
Query: 582 GRVSTNGDVYSFG 594
+ T DVY G
Sbjct: 81 PNIITLKDVYDDG 93
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 18 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 5 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 5 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 38 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 87
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 132 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 188
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 189 HISDL--RALAGLKNLDVLEL 207
>pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
pdb|1PYM|B Chain B, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
Length = 295
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 595 IMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVV--------DTNLLSQEDKHFT 646
++++ T K PTD ++ W N L SV + D +L++ EDK +
Sbjct: 212 VVIVPTKYYKTPTDHFRDXGVSXVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVS 271
Query: 647 TKEQFMKVIDANLLTREDNYF 667
KE F D L+ ED Y
Sbjct: 272 VKEIFRLQRDDELVQAEDKYL 292
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 130 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 186
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 187 HISDL--RALAGLKNLDVLEL 205
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 256 QLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWN 314
Q++G++P L LDL N+L +P L L L + N+LTS+P L
Sbjct: 71 QVDGTLP-------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374
L ++ L L N P + L +L L+ NN + + + GL++L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 375 RL 376
L
Sbjct: 183 SL 184
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRL-----------PNLEELLLWGN 105
L L + SFN+L + A+ + L+ LYL L P LE+L L N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 106 NFSGTIPSFIFNA-SKLFTLGLEENSFSGFIPNTFGS 141
N + +P+ + N L TL L+ENS FGS
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 502 NDANMSSVANQKRFTYLELFQATNGFSENNLIGRGGFGSVYKA-RIHDGMEAAVK 555
ND + + +A K LE + + L+G GGFGSVY R+ D + A+K
Sbjct: 33 NDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 62/156 (39%), Gaps = 42/156 (26%)
Query: 265 LC--GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQL---------TSIPSTLW 313
LC ++ LD N L + G+LT L L L NQL T+ +L
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377
Query: 314 NL-------------------KDILHLNLSSNSFTGP----LPLKIGNFNVLIQLDLSMN 350
L K +L LN+SSN T LP +I LDL N
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK------VLDLHSN 431
Query: 351 NFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGD 386
IP ++ L+ LQ L + N+L+ S+P+ I D
Sbjct: 432 KIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFD 465
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVK 555
F E LIG GGFG V+KA+ DG +K
Sbjct: 13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIK 42
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 150 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 206
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 207 HISDL--RALAGLKNLDVLEL 225
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 150 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 206
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 207 HISDL--RALAGLKNLDVLEL 225
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 551 EAAVKVFDLQYRGAFKSFDIECDMMKQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV 610
E A++V D Y G + D+ +M + +G + Y F IM TR+ D
Sbjct: 529 EEAIEVLDDVYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMA----TRRLEADRF 584
Query: 611 FSGEM-----TLK--RWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKVIDANLLTR 662
F+ + T K WVN S+ +V+D + DK ++ F V D+ LT+
Sbjct: 585 FTSDFNETIYTKKGLEWVN--TTESLKDVIDRHYPDMTDKWMNSESAF-SVWDSPPLTK 640
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 150 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 206
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 207 HISDL--RALAGLKNLDVLEL 225
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 9 LAELQKLWLDNNSLTGTIPSSIFXXXXXXXXXXXXXXXTGEIPYEIGNLHNLEWM---AF 65
L++L++LWL NN + +IPS F + ++G L LE++ AF
Sbjct: 146 LSKLRELWLRNNPIE-SIPSYAFNRVPSL------------MRLDLGELKKLEYISEGAF 192
Query: 66 SFNKLVGVVPTAIFNVSTLKSLYLHNVR-LPNL------EELLLWGNNFSGTIPSFIFNA 118
+FN+ L +L + N++ +PNL EEL + GN+F P
Sbjct: 193 E----------GLFNLKYL-NLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241
Query: 119 SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFG 178
S L L + + S N F L +L L+L N L SS P F + +YL
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLF----TPLRYLVELH 296
Query: 179 FYNNP 183
++NP
Sbjct: 297 LHHNP 301
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 264 NLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN-LKDILHLN 322
NL L L +L++ GN P L++L+KL++ ++Q++ I ++ L ++ LN
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272
Query: 323 LSSNSFTGPLPLKI-GNFNVLIQLDLSMNNF 352
L+ N+ + LP + L++L L N +
Sbjct: 273 LAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI 308
L LF + G + L FIP NL NL LYLGSN ++SI
Sbjct: 103 SLKHLFLIQTGISNL-EFIPV--HNLENLESLYLGSNHISSI 141
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 527 FSENNLIGRGGFGSVYKAR 545
F E LIG GGFG V+KA+
Sbjct: 14 FKEIELIGSGGFGQVFKAK 32
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 254 DNQLEGSIPDNLC-----GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLT-- 306
+N L+ + LC GL+ L L L N L P +LT LR L L SN+LT
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519
Query: 307 ---SIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNF 352
+P+ L +I L++S N P P F L LD++ N F
Sbjct: 520 SHNDLPANL----EI--LDISRNQLLAPNP---DVFVSLSVLDITHNKF 559
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 24/135 (17%)
Query: 57 LHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIF 116
L L + FS NK+ + A S + + L + RL N++ + G
Sbjct: 56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG------------ 103
Query: 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP----------KLSFLS 166
L TL L N + ++F L ++ LSL DN +T+ P L+ L+
Sbjct: 104 -LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
Query: 167 SLSNCK-YLEYFGFY 180
+ NC YL + G +
Sbjct: 163 NPFNCNCYLAWLGEW 177
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350
+L L LYLG+N++T I + L L + L+L N + +PL L L LS N
Sbjct: 127 HLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKN 183
Query: 351 NFSGVIPTKIGGLKDLQYLFL 371
+ S + + GLK+L L L
Sbjct: 184 HISDL--RALAGLKNLDVLEL 202
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 59 NLEWMAFSFNKLVGVVPTAI---------FNVSTLKSLYLHNVRLPNLEELLLWGNNFSG 109
+L+++ SFN ++ + + F S LK + +V L +L L+ + +
Sbjct: 79 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTH 137
Query: 110 TIPSF--IFNA-SKLFTLGLEENSFS-GFIPNTFGSLRNLEWLSLNDNYLTSSTP 160
T +F IFN S L L + NSF F+P+ F LRNL +L L+ L +P
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
>pdb|1U9T|A Chain A, Crystal Structure Analysis Of Chus, An E. Coli Heme
Oxygenase
Length = 354
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 629 VMEVVDTNLLSQEDKHFTTKEQFMKVIDANLLTREDNYFMTKEQRVSLVFNSAMERTVES 688
V D ++ QE + T QF ++ + LTR+ + + + V NSA+ + +ES
Sbjct: 185 VQTRADATVVEQEWRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILES 244
Query: 689 PK 690
+
Sbjct: 245 AQ 246
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 59 NLEWMAFSFNKLVGVVPTAI---------FNVSTLKSLYLHNVRLPNLEELLLWGNNFSG 109
+L+++ SFN ++ + + F S LK + +V L +L L+ + +
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNLIYLDISHTH 432
Query: 110 TIPSF--IFNA-SKLFTLGLEENSFS-GFIPNTFGSLRNLEWLSLNDNYLTSSTP 160
T +F IFN S L L + NSF F+P+ F LRNL +L L+ L +P
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
>pdb|2HQ2|A Chain A, Structure Of The Escherichia Coli O157:h7 Heme Oxygenase
Chus In Complex With Heme
Length = 354
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 629 VMEVVDTNLLSQEDKHFTTKEQFMKVIDANLLTREDNYFMTKEQRVSLVFNSAMERTVES 688
V D ++ QE + T QF ++ + LTR+ + + + V NSA+ + +ES
Sbjct: 185 VQTRADATVVEQEWRAMTDVHQFFTLLKRHNLTRQQAFNLVADDLACKVSNSALAQILES 244
Query: 689 PK 690
+
Sbjct: 245 AQ 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,112,430
Number of Sequences: 62578
Number of extensions: 774659
Number of successful extensions: 2929
Number of sequences better than 100.0: 164
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 2155
Number of HSP's gapped (non-prelim): 454
length of query: 690
length of database: 14,973,337
effective HSP length: 106
effective length of query: 584
effective length of database: 8,340,069
effective search space: 4870600296
effective search space used: 4870600296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)