Query 042662
Match_columns 690
No_of_seqs 632 out of 5237
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042662.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042662hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-58 5.7E-63 534.9 37.0 450 6-462 196-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.9E-54 3E-58 495.4 32.7 442 2-451 92-554 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4.5E-50 1.5E-54 453.8 36.4 445 2-451 27-563 (606)
4 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-48 5.3E-53 456.1 35.6 436 8-452 22-564 (844)
5 1ziw_A TOLL-like receptor 3; i 100.0 9E-48 3.1E-52 441.0 39.4 449 4-453 67-627 (680)
6 3t6q_A CD180 antigen; protein- 100.0 8.3E-48 2.9E-52 435.3 38.7 420 3-430 50-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.2E-48 2.1E-52 436.3 35.4 440 2-452 26-562 (606)
8 4eco_A Uncharacterized protein 100.0 8.9E-48 3.1E-52 435.1 24.5 415 10-448 81-600 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-46 8.2E-51 423.3 36.2 418 4-430 50-563 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 2.6E-46 8.9E-51 420.0 35.3 436 2-453 22-536 (570)
11 1ziw_A TOLL-like receptor 3; i 100.0 3E-45 1E-49 420.0 41.3 423 2-428 19-496 (680)
12 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-45 1.1E-49 427.9 31.9 422 3-430 41-565 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 6.4E-45 2.2E-49 408.7 32.5 418 3-432 45-538 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 1.9E-45 6.5E-50 422.6 26.0 426 10-447 323-839 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 5.5E-45 1.9E-49 407.2 26.2 433 2-452 20-514 (549)
16 4eco_A Uncharacterized protein 100.0 3.8E-45 1.3E-49 413.6 24.2 356 43-427 192-602 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 1.2E-44 4.2E-49 415.9 24.8 396 2-427 339-842 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.7E-48 393.9 24.1 423 13-451 3-484 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-43 3.6E-48 393.9 21.6 405 2-429 15-485 (520)
20 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-42 1.5E-46 383.8 30.9 420 9-447 4-485 (549)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.8E-39 6.3E-44 369.1 36.8 433 10-451 52-583 (635)
22 3v47_A TOLL-like receptor 5B a 100.0 5.8E-40 2E-44 357.7 30.4 385 12-431 12-414 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-39 6.4E-44 363.0 31.1 408 8-429 29-514 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 1.3E-39 4.4E-44 355.0 27.5 363 10-405 30-412 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 2E-38 6.7E-43 360.6 34.9 418 4-429 70-584 (635)
26 1jl5_A Outer protein YOPM; leu 100.0 9.9E-39 3.4E-43 345.4 26.6 370 7-429 8-415 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 3.4E-38 1.2E-42 341.2 27.1 372 1-429 25-433 (454)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.6E-38 2.2E-42 350.4 27.7 388 2-406 46-515 (562)
29 1o6v_A Internalin A; bacterial 100.0 1.7E-36 5.9E-41 330.7 32.2 345 9-426 45-389 (466)
30 3bz5_A Internalin-J, INLJ; leu 100.0 5.5E-37 1.9E-41 332.0 25.5 349 4-431 36-393 (457)
31 1o6v_A Internalin A; bacterial 100.0 3.7E-36 1.3E-40 328.1 31.2 346 32-449 44-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 1.6E-36 5.3E-41 332.5 24.9 321 61-403 14-335 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 1.5E-34 5.2E-39 316.7 29.7 320 12-353 13-333 (477)
34 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-34 7.8E-39 311.5 27.8 318 20-402 28-353 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2E-33 7E-38 299.3 26.7 289 8-329 43-331 (390)
36 3oja_B Anopheles plasmodium-re 100.0 2.3E-33 7.7E-38 315.4 26.8 310 10-379 51-360 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 5.1E-33 1.7E-37 296.2 26.2 333 95-451 45-377 (390)
38 3oja_B Anopheles plasmodium-re 100.0 3.6E-33 1.2E-37 313.8 26.2 334 94-451 50-383 (597)
39 4fmz_A Internalin; leucine ric 100.0 1.5E-32 5E-37 287.9 28.5 285 115-425 62-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 2.3E-32 7.9E-37 286.4 27.3 307 30-401 40-346 (347)
41 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-33 5.8E-38 289.9 17.9 253 198-452 51-308 (313)
42 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-32 8E-37 281.4 15.7 251 172-426 50-305 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.9E-30 6.6E-35 269.9 25.7 289 11-327 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 266.2 28.6 273 97-399 54-330 (330)
45 1xku_A Decorin; proteoglycan, 100.0 6.4E-30 2.2E-34 265.8 29.0 291 10-327 31-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3.3E-30 1.1E-34 268.1 26.1 265 97-399 56-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 9.7E-35 3.3E-39 317.0 -10.1 387 10-425 3-440 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-33 7.2E-38 306.4 -4.1 352 34-427 3-413 (461)
49 3ogk_B Coronatine-insensitive 100.0 6.5E-31 2.2E-35 296.1 3.1 410 6-420 69-546 (592)
50 3ogk_B Coronatine-insensitive 100.0 4.1E-31 1.4E-35 297.8 -3.3 393 26-426 65-527 (592)
51 4fcg_A Uncharacterized protein 100.0 6.8E-28 2.3E-32 249.5 18.7 224 198-425 82-314 (328)
52 4fcg_A Uncharacterized protein 100.0 9.2E-28 3.2E-32 248.5 19.3 224 173-401 82-314 (328)
53 2z66_A Variable lymphocyte rec 99.9 4.3E-27 1.5E-31 241.7 21.0 230 198-428 29-264 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 1.5E-27 5.2E-32 250.2 17.4 222 105-331 86-316 (353)
55 2z80_A TOLL-like receptor 2, v 99.9 9.9E-28 3.4E-32 251.6 15.8 281 118-429 30-318 (353)
56 2z66_A Variable lymphocyte rec 99.9 2.7E-27 9.3E-32 243.1 18.6 251 122-404 10-264 (306)
57 3zyi_A Leucine-rich repeat-con 99.9 1.5E-26 5.1E-31 251.1 24.9 230 198-429 76-307 (452)
58 3zyj_A Leucine-rich repeat-con 99.9 2E-26 6.8E-31 249.2 25.2 229 198-428 65-295 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 248.4 24.9 231 172-404 75-306 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 4.1E-26 1.4E-30 246.7 24.9 231 172-404 64-295 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 7.2E-27 2.5E-31 237.3 17.7 209 221-429 32-242 (285)
62 1ozn_A Reticulon 4 receptor; N 99.9 2.5E-26 8.7E-31 233.3 20.2 109 198-306 130-238 (285)
63 1wwl_A Monocyte differentiatio 99.9 2.6E-27 8.8E-32 243.8 11.4 246 95-354 43-310 (312)
64 1wwl_A Monocyte differentiatio 99.9 5.6E-28 1.9E-32 248.8 4.9 202 219-426 93-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-27 5.1E-32 246.2 7.2 239 117-374 32-272 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-25 2.8E-29 243.6 27.5 187 198-412 122-308 (622)
67 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-25 2.1E-29 244.6 26.1 143 198-360 162-304 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.1E-27 2.1E-31 241.6 7.5 267 36-358 12-281 (317)
69 3oja_A Leucine-rich immune mol 99.9 5.7E-26 1.9E-30 247.9 11.8 234 120-372 35-270 (487)
70 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5E-30 244.7 12.8 235 96-349 35-271 (487)
71 2p1m_B Transport inhibitor res 99.9 5E-28 1.7E-32 272.6 -7.4 410 6-422 62-541 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 216.1 19.4 208 222-430 29-242 (276)
73 2p1m_B Transport inhibitor res 99.9 1.6E-27 5.6E-32 268.4 -6.8 401 13-424 46-518 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 8.3E-24 2.8E-28 213.7 19.3 207 198-405 29-241 (276)
75 1p9a_G Platelet glycoprotein I 99.9 4.9E-23 1.7E-27 209.0 21.0 205 217-427 6-210 (290)
76 2o6q_A Variable lymphocyte rec 99.9 1.2E-22 4.2E-27 204.2 22.6 204 223-429 18-222 (270)
77 2o6q_A Variable lymphocyte rec 99.9 2.6E-22 9E-27 201.8 22.0 205 198-405 17-222 (270)
78 3rfs_A Internalin B, repeat mo 99.9 5.9E-23 2E-27 206.8 16.9 222 122-362 22-244 (272)
79 3rfs_A Internalin B, repeat mo 99.9 7.7E-23 2.6E-27 205.9 15.6 208 118-341 40-247 (272)
80 1p9a_G Platelet glycoprotein I 99.9 4.2E-22 1.4E-26 202.1 20.6 207 240-451 5-211 (290)
81 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.2E-27 206.9 16.3 223 173-401 65-307 (310)
82 2ca6_A RAN GTPase-activating p 99.9 1.2E-23 4.1E-28 223.4 5.0 239 188-427 24-318 (386)
83 4glp_A Monocyte differentiatio 99.9 1.5E-22 5.1E-27 208.0 11.9 223 198-426 65-308 (310)
84 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 220.8 3.6 250 177-427 3-299 (362)
85 2xwt_C Thyrotropin receptor; s 99.9 6.9E-22 2.4E-26 194.9 15.6 196 198-422 32-236 (239)
86 2ast_B S-phase kinase-associat 99.9 5E-23 1.7E-27 214.3 6.7 251 174-431 49-312 (336)
87 2ca6_A RAN GTPase-activating p 99.9 6.3E-24 2.2E-28 225.5 -0.5 252 135-405 24-320 (386)
88 3goz_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 217.4 5.2 253 100-378 3-298 (362)
89 2ast_B S-phase kinase-associat 99.9 1E-22 3.6E-27 211.9 6.9 35 119-154 70-104 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 3.7E-21 1.3E-25 189.7 16.7 179 172-353 31-218 (239)
91 1h6u_A Internalin H; cell adhe 99.9 5.2E-21 1.8E-25 196.0 15.8 190 198-426 42-231 (308)
92 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.3E-25 186.1 19.2 179 222-427 15-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 1.2E-20 4.2E-25 193.2 17.4 194 168-401 37-230 (308)
94 3m19_A Variable lymphocyte rec 99.8 2.4E-20 8.1E-25 185.3 18.2 179 198-403 15-194 (251)
95 3cvr_A Invasion plasmid antige 99.8 1.4E-19 4.9E-24 198.9 17.0 188 198-412 60-254 (571)
96 2o6s_A Variable lymphocyte rec 99.8 2.1E-19 7.2E-24 173.0 16.0 159 222-387 29-188 (208)
97 4ay9_X Follicle-stimulating ho 99.8 2.2E-19 7.7E-24 187.5 16.6 241 98-350 12-256 (350)
98 4ay9_X Follicle-stimulating ho 99.8 5.4E-19 1.9E-23 184.6 18.7 220 198-422 31-256 (350)
99 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 170.1 16.9 161 198-365 29-190 (208)
100 3cvr_A Invasion plasmid antige 99.8 5E-19 1.7E-23 194.6 17.8 183 221-430 59-248 (571)
101 1h6t_A Internalin B; cell adhe 99.8 3E-18 1E-22 173.8 14.2 172 218-426 43-214 (291)
102 1m9s_A Internalin B; cell inva 99.8 2.4E-18 8.2E-23 191.3 14.5 189 98-308 24-212 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 5.9E-18 2E-22 164.1 15.2 154 273-429 15-170 (220)
104 1h6t_A Internalin B; cell adhe 99.8 3.7E-18 1.3E-22 173.1 14.2 170 141-329 44-213 (291)
105 2xot_A Amphoterin-induced prot 99.7 9.9E-18 3.4E-22 175.7 14.7 178 224-427 21-204 (361)
106 2v9t_B SLIT homolog 2 protein 99.7 1.8E-17 6E-22 160.7 15.1 134 294-427 33-167 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 1.8E-17 6.2E-22 160.6 15.0 135 271-405 34-170 (220)
108 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 175.3 13.9 174 176-353 22-202 (361)
109 3e6j_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 159.1 16.5 152 199-353 21-172 (229)
110 2v9t_B SLIT homolog 2 protein 99.7 3.8E-17 1.3E-21 158.4 15.9 154 224-403 14-167 (220)
111 1m9s_A Internalin B; cell inva 99.7 4.4E-17 1.5E-21 181.2 18.3 154 115-286 61-214 (605)
112 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.2E-25 208.5 -10.3 204 31-276 346-567 (567)
113 1dce_A Protein (RAB geranylger 99.7 2.8E-20 9.7E-25 205.6 -8.9 120 295-418 443-566 (567)
114 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 155.7 16.5 134 269-403 40-174 (229)
115 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 155.9 11.4 151 269-425 44-194 (197)
116 1w8a_A SLIT protein; signaling 99.7 2.3E-17 7.9E-22 156.3 9.5 132 296-429 11-143 (192)
117 4ezg_A Putative uncharacterize 99.7 1.2E-16 4E-21 152.2 13.8 148 198-352 45-193 (197)
118 1xeu_A Internalin C; cellular 99.7 2.8E-17 9.5E-22 164.0 9.3 166 223-402 21-186 (263)
119 4b8c_D Glucose-repressible alc 99.7 8.8E-18 3E-22 191.5 6.1 183 236-427 215-406 (727)
120 4b8c_D Glucose-repressible alc 99.7 1.2E-17 4.2E-22 190.4 6.1 181 212-401 215-404 (727)
121 1xeu_A Internalin C; cellular 99.7 7.6E-17 2.6E-21 160.8 9.3 168 198-379 20-187 (263)
122 4gt4_A Tyrosine-protein kinase 99.7 1.2E-17 4.1E-22 169.5 3.5 78 576-672 216-304 (308)
123 4aoj_A High affinity nerve gro 99.7 8.1E-17 2.8E-21 165.0 9.4 47 529-575 45-97 (329)
124 4asz_A BDNF/NT-3 growth factor 99.6 1.5E-16 5.2E-21 160.7 8.6 46 530-575 18-69 (299)
125 3sb4_A Hypothetical leucine ri 99.6 1.2E-16 4E-21 165.4 7.0 100 220-321 225-326 (329)
126 3omv_A RAF proto-oncogene seri 99.6 1.8E-16 6.3E-21 160.1 7.7 87 576-676 203-302 (307)
127 1w8a_A SLIT protein; signaling 99.6 9.4E-16 3.2E-20 145.1 12.0 131 272-405 11-143 (192)
128 2qkw_B Protein kinase; three-h 99.6 5.9E-16 2E-20 159.6 10.5 157 513-674 27-315 (321)
129 2wfh_A SLIT homolog 2 protein 99.6 4.9E-15 1.7E-19 140.2 13.0 130 296-428 13-142 (193)
130 3hmm_A TGF-beta receptor type- 99.6 3.7E-15 1.3E-19 151.4 12.2 92 576-675 181-298 (303)
131 3sb4_A Hypothetical leucine ri 99.6 3.8E-15 1.3E-19 154.0 12.3 267 9-300 24-328 (329)
132 2je0_A Acidic leucine-rich nuc 99.6 1.7E-15 5.8E-20 137.0 8.2 130 8-152 15-149 (149)
133 2o6r_A Variable lymphocyte rec 99.6 8E-15 2.8E-19 136.8 13.0 133 295-429 9-141 (177)
134 3uim_A Brassinosteroid insensi 99.6 1.7E-15 5.7E-20 156.6 8.9 158 511-673 16-310 (326)
135 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 138.2 9.8 107 221-329 24-133 (168)
136 2ell_A Acidic leucine-rich nuc 99.6 6.3E-15 2.1E-19 136.3 11.7 135 172-309 24-163 (168)
137 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 134.3 7.6 109 198-308 18-128 (149)
138 2wfh_A SLIT homolog 2 protein 99.5 3.4E-14 1.2E-18 134.3 13.5 130 272-404 13-142 (193)
139 4fdw_A Leucine rich hypothetic 99.5 5.8E-13 2E-17 140.6 21.9 213 199-420 159-378 (401)
140 2o6r_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 128.9 14.7 130 12-157 9-138 (177)
141 4fdw_A Leucine rich hypothetic 99.5 1.3E-12 4.5E-17 137.9 23.5 264 34-329 113-383 (401)
142 4fs7_A Uncharacterized protein 99.5 1.7E-12 5.7E-17 137.6 24.3 327 5-369 66-393 (394)
143 2nru_A Interleukin-1 receptor- 99.5 6.1E-14 2.1E-18 143.4 12.3 155 511-674 11-306 (307)
144 4ase_A Vascular endothelial gr 99.5 1.8E-14 6.2E-19 148.8 8.3 34 576-609 256-290 (353)
145 1a9n_A U2A', U2A'; complex (nu 99.5 4.8E-14 1.7E-18 131.3 8.2 131 291-425 17-153 (176)
146 4fs7_A Uncharacterized protein 99.5 2.5E-12 8.4E-17 136.3 21.9 330 27-417 64-393 (394)
147 1a9n_A U2A', U2A'; complex (nu 99.5 7.3E-14 2.5E-18 130.1 8.7 132 217-352 15-152 (176)
148 1ds9_A Outer arm dynein; leuci 99.5 3.5E-16 1.2E-20 149.1 -7.8 101 315-418 69-180 (198)
149 1ds9_A Outer arm dynein; leuci 99.5 5.5E-16 1.9E-20 147.7 -6.9 155 241-401 14-185 (198)
150 3g39_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 121.7 11.2 106 295-402 11-116 (170)
151 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 120.5 11.3 110 317-429 10-119 (170)
152 4fih_A Serine/threonine-protei 99.4 1.8E-13 6.1E-18 140.0 5.5 83 527-609 76-272 (346)
153 2r9u_A Variable lymphocyte rec 99.4 2.8E-12 9.7E-17 118.8 11.3 104 296-401 15-118 (174)
154 3fpq_A Serine/threonine-protei 99.4 2.8E-12 9.6E-17 128.4 11.6 45 531-575 32-79 (290)
155 2r9u_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 118.3 11.4 109 318-429 14-122 (174)
156 4b9d_A Serine/threonine-protei 99.3 4E-13 1.4E-17 137.7 5.5 51 525-575 24-77 (350)
157 4fie_A Serine/threonine-protei 99.3 6.6E-13 2.2E-17 139.4 5.9 84 526-609 152-349 (423)
158 4gt6_A Cell surface protein; l 99.3 3.9E-10 1.3E-14 119.4 26.3 132 238-399 258-389 (394)
159 2c30_A Serine/threonine-protei 99.3 1.3E-12 4.4E-17 134.4 6.3 64 512-575 22-96 (321)
160 2qol_A Ephrin receptor; recept 99.3 8.7E-13 3E-17 138.5 4.7 51 525-575 45-100 (373)
161 4aw0_A HPDK1, 3-phosphoinositi 99.3 1.6E-12 5.5E-17 130.9 4.6 50 526-575 33-86 (311)
162 3hyh_A Carbon catabolite-derep 99.3 3.2E-12 1.1E-16 126.8 6.4 51 525-575 13-67 (275)
163 3s95_A LIMK-1, LIM domain kina 99.2 6.9E-12 2.4E-16 128.3 7.7 50 526-575 11-61 (310)
164 4g3f_A NF-kappa-beta-inducing 99.2 2.3E-12 8E-17 131.4 4.1 35 576-610 225-259 (336)
165 3ubd_A Ribosomal protein S6 ki 99.2 1.1E-12 3.7E-17 132.2 1.4 34 576-609 195-228 (304)
166 3kul_A Ephrin type-A receptor 99.2 1.7E-11 5.7E-16 126.3 9.7 47 529-575 53-104 (325)
167 3poz_A Epidermal growth factor 99.2 4.6E-12 1.6E-16 130.6 5.4 80 576-674 188-278 (327)
168 3soc_A Activin receptor type-2 99.2 1.6E-11 5.4E-16 126.3 9.1 93 576-676 202-320 (322)
169 3ugc_A Tyrosine-protein kinase 99.2 8.5E-12 2.9E-16 126.6 6.9 49 527-575 12-65 (295)
170 4gt6_A Cell surface protein; l 99.2 1.6E-09 5.6E-14 114.5 24.4 134 284-424 256-390 (394)
171 1qcf_A Haematopoetic cell kina 99.2 5.3E-12 1.8E-16 136.4 4.2 51 524-575 187-237 (454)
172 3q4u_A Activin receptor type-1 99.2 5.6E-11 1.9E-15 120.8 11.5 47 525-575 8-54 (301)
173 3p86_A Serine/threonine-protei 99.2 3.1E-11 1.1E-15 123.2 9.1 52 523-575 35-88 (309)
174 3op5_A Serine/threonine-protei 99.2 2.1E-11 7.3E-16 127.7 8.0 94 576-678 230-333 (364)
175 2eva_A TAK1 kinase - TAB1 chim 99.2 6.1E-11 2.1E-15 121.0 10.3 46 527-575 10-55 (307)
176 3cbl_A C-FES, proto-oncogene t 99.2 1.6E-11 5.3E-16 129.3 6.0 50 526-575 115-166 (377)
177 1k9a_A Carboxyl-terminal SRC k 99.2 2.1E-11 7E-16 131.5 7.1 48 525-575 193-240 (450)
178 2ifg_A High affinity nerve gro 99.2 3.3E-11 1.1E-15 125.3 8.3 105 297-403 12-118 (347)
179 2ozo_A Tyrosine-protein kinase 99.2 6.1E-11 2.1E-15 132.6 10.7 92 576-686 508-610 (613)
180 4aw2_A Serine/threonine-protei 99.2 7.5E-12 2.6E-16 133.7 3.1 62 514-575 63-128 (437)
181 3un9_A NLR family member X1; l 99.2 1.6E-12 5.3E-17 136.0 -2.4 161 245-425 72-252 (372)
182 3uzp_A CKI-delta, CKID, casein 99.2 6.4E-11 2.2E-15 120.0 9.5 98 576-687 184-293 (296)
183 2wqm_A Serine/threonine-protei 99.1 7.6E-11 2.6E-15 120.4 9.9 51 525-575 32-86 (310)
184 4b99_A Mitogen-activated prote 99.1 2.6E-11 8.8E-16 127.4 6.4 51 525-575 54-107 (398)
185 2jii_A Serine/threonine-protei 99.1 4.9E-11 1.7E-15 124.3 8.1 103 576-687 237-349 (352)
186 3lxp_A Non-receptor tyrosine-p 99.1 3.7E-12 1.3E-16 130.8 -0.4 48 528-575 34-87 (318)
187 4hcu_A Tyrosine-protein kinase 99.1 8E-11 2.7E-15 117.6 9.1 48 527-575 12-59 (269)
188 3un9_A NLR family member X1; l 99.1 7.9E-12 2.7E-16 130.6 1.4 64 292-355 182-254 (372)
189 3qup_A Tyrosine-protein kinase 99.1 8.7E-11 3E-15 120.8 9.2 58 518-575 16-79 (323)
190 1opk_A P150, C-ABL, proto-onco 99.1 1.5E-11 5E-16 134.3 3.5 49 526-575 221-270 (495)
191 3lxl_A Tyrosine-protein kinase 99.1 4.1E-12 1.4E-16 131.0 -0.9 49 527-575 25-78 (327)
192 2ifg_A High affinity nerve gro 99.1 1.3E-10 4.3E-15 120.9 10.3 108 319-429 11-120 (347)
193 1fmk_A C-SRC, P60-SRC, tyrosin 99.1 7.5E-11 2.6E-15 127.2 8.9 49 526-575 185-233 (452)
194 3gxj_A TGF-beta receptor type- 99.1 2.4E-11 8.2E-16 123.7 4.6 47 525-575 3-49 (303)
195 4hgt_A Casein kinase I isoform 99.1 1.1E-10 3.9E-15 118.2 9.3 99 576-688 184-294 (296)
196 4g31_A Eukaryotic translation 99.1 2.6E-11 9E-16 122.4 4.4 50 526-575 6-57 (299)
197 1b6c_B TGF-B superfamily recep 99.1 2.8E-10 9.5E-15 118.0 11.9 93 576-676 220-338 (342)
198 3fxz_A Serine/threonine-protei 99.1 7E-11 2.4E-15 119.9 6.9 51 525-575 20-71 (297)
199 3p1a_A MYT1 kinase, membrane-a 99.1 3.7E-11 1.3E-15 122.9 4.7 50 525-574 57-109 (311)
200 2w1i_A JAK2; chromosomal rearr 99.1 6.5E-11 2.2E-15 121.9 6.5 49 527-575 43-96 (326)
201 3kmu_A ILK, integrin-linked ki 99.1 9.3E-11 3.2E-15 117.1 7.3 49 526-575 11-61 (271)
202 3og7_A AKAP9-BRAF fusion prote 99.1 1.3E-10 4.4E-15 117.5 8.3 48 526-575 25-74 (289)
203 3sxs_A Cytoplasmic tyrosine-pr 99.1 1.4E-10 4.7E-15 115.8 8.3 49 526-575 9-57 (268)
204 1u59_A Tyrosine-protein kinase 99.1 2.9E-10 9.9E-15 114.7 10.8 89 576-683 182-281 (287)
205 4f0f_A Serine/threonine-protei 99.1 1.8E-10 6.1E-15 116.2 9.2 51 525-575 19-77 (287)
206 2h8h_A Proto-oncogene tyrosine 99.1 1.2E-10 4.2E-15 128.2 8.6 49 526-575 268-316 (535)
207 4f9c_A Cell division cycle 7-r 99.1 8.7E-11 3E-15 122.0 6.8 57 517-575 13-73 (361)
208 3lb7_A RAF proto-oncogene seri 99.1 9.6E-11 3.3E-15 119.5 7.0 49 525-575 36-86 (307)
209 3gen_A Tyrosine-protein kinase 99.1 2.1E-10 7.2E-15 115.4 9.4 49 526-575 25-73 (283)
210 3l9p_A Anaplastic lymphoma kin 99.1 1.4E-10 4.8E-15 121.4 8.3 50 526-575 72-128 (367)
211 1csn_A Casein kinase-1; phosph 99.1 8.8E-11 3E-15 119.2 6.4 97 576-686 187-295 (298)
212 4fl3_A Tyrosine-protein kinase 99.1 7E-11 2.4E-15 132.5 6.1 45 531-575 375-424 (635)
213 1mqb_A Ephrin type-A receptor 99.1 3.1E-10 1.1E-14 117.1 10.6 34 576-609 219-253 (333)
214 2psq_A Fibroblast growth facto 99.1 7.7E-11 2.6E-15 123.6 6.1 34 576-609 274-308 (370)
215 3t9t_A Tyrosine-protein kinase 99.1 2.3E-10 7.9E-15 114.0 9.0 48 527-575 10-57 (267)
216 3dbq_A Dual specificity protei 99.1 5.4E-11 1.8E-15 123.5 4.3 50 526-575 10-61 (343)
217 3mdy_A Bone morphogenetic prot 99.1 6.3E-10 2.1E-14 115.0 12.1 34 525-559 37-70 (337)
218 3pls_A Macrophage-stimulating 99.1 5E-10 1.7E-14 113.6 10.8 47 529-575 25-76 (298)
219 3dtc_A Mitogen-activated prote 99.0 2.7E-10 9.2E-15 113.8 8.6 50 525-575 7-60 (271)
220 2buj_A Serine/threonine-protei 99.0 1.5E-10 5E-15 118.7 6.8 50 526-575 30-80 (317)
221 3cc6_A Protein tyrosine kinase 99.0 3.5E-10 1.2E-14 113.7 9.3 52 524-575 11-67 (281)
222 1luf_A Muscle-specific tyrosin 99.0 3.1E-10 1.1E-14 117.7 9.2 57 519-575 41-104 (343)
223 1qpc_A LCK kinase; alpha beta 99.0 2.8E-10 9.7E-15 114.2 8.6 49 526-575 14-62 (279)
224 3uto_A Twitchin; kinase, muscl 99.0 1.1E-10 3.7E-15 128.9 5.9 51 525-575 157-208 (573)
225 3pg1_A Mitogen-activated prote 99.0 1.7E-10 6E-15 120.6 7.2 62 514-575 11-83 (362)
226 4eqm_A Protein kinase; transfe 99.0 3.8E-10 1.3E-14 114.2 9.4 50 526-575 12-65 (294)
227 3kfa_A Tyrosine-protein kinase 99.0 6.6E-11 2.2E-15 119.5 3.6 52 523-575 11-63 (288)
228 3niz_A Rhodanese family protei 99.0 1.9E-10 6.4E-15 117.6 6.5 51 525-575 21-73 (311)
229 1byg_A CSK, protein (C-termina 99.0 2.9E-10 9.9E-15 114.1 7.7 47 526-575 22-68 (278)
230 2x4f_A Myosin light chain kina 99.0 1.3E-10 4.5E-15 121.8 5.4 47 529-575 93-140 (373)
231 3tt0_A Basic fibroblast growth 99.0 4.1E-10 1.4E-14 118.6 9.2 33 576-608 262-295 (382)
232 3fe3_A MAP/microtubule affinit 99.0 1.6E-10 5.3E-15 119.0 5.8 53 523-575 13-68 (328)
233 2vd5_A DMPK protein; serine/th 99.0 8.4E-11 2.9E-15 124.6 3.9 62 514-575 50-115 (412)
234 3sv0_A Casein kinase I-like; t 99.0 2.3E-10 8E-15 123.7 7.4 35 576-610 182-216 (483)
235 3g2f_A Bone morphogenetic prot 99.0 5.7E-10 2E-14 115.3 9.7 101 576-683 197-327 (336)
236 3e7e_A HBUB1, BUB1A, mitotic c 99.0 3.5E-11 1.2E-15 126.1 -0.0 34 576-609 254-287 (365)
237 3tki_A Serine/threonine-protei 99.0 2E-10 6.7E-15 118.1 5.6 51 525-575 7-59 (323)
238 2zmd_A Dual specificity protei 99.0 1.7E-10 5.9E-15 121.7 5.3 49 527-575 58-108 (390)
239 3cek_A Dual specificity protei 99.0 1.2E-10 4.1E-15 119.2 3.8 61 515-575 18-80 (313)
240 3vhe_A Vascular endothelial gr 99.0 4.3E-10 1.5E-14 117.4 8.1 34 576-609 264-298 (359)
241 3zgw_A Maternal embryonic leuc 99.0 1.8E-10 6.2E-15 119.3 5.0 53 523-575 8-62 (347)
242 3lzb_A Epidermal growth factor 99.0 2.2E-10 7.5E-15 117.9 5.6 34 576-609 188-222 (327)
243 3v8s_A RHO-associated protein 99.0 1.4E-10 4.7E-15 122.9 4.0 60 516-575 60-123 (410)
244 3brb_A Proto-oncogene tyrosine 99.0 5.9E-10 2E-14 113.9 8.6 57 519-575 28-90 (313)
245 2pvf_A Fibroblast growth facto 99.0 4.9E-10 1.7E-14 115.7 8.0 34 576-609 228-262 (334)
246 1t46_A HOMO sapiens V-KIT hard 99.0 3.5E-10 1.2E-14 115.5 6.8 34 576-609 216-250 (313)
247 2h34_A Serine/threonine-protei 99.0 1.2E-09 4.2E-14 111.3 10.7 51 525-575 34-88 (309)
248 1o6l_A RAC-beta serine/threoni 99.0 3.1E-10 1.1E-14 117.1 6.2 51 525-575 5-59 (337)
249 3c1x_A Hepatocyte growth facto 99.0 5E-10 1.7E-14 117.4 7.7 47 529-575 93-144 (373)
250 1u5q_A Serine/threonine protei 99.0 2.8E-10 9.6E-15 118.2 5.7 49 527-575 56-108 (348)
251 4fvq_A Tyrosine-protein kinase 99.0 3.2E-10 1.1E-14 114.4 5.9 49 527-575 10-66 (289)
252 1p4o_A Insulin-like growth fac 99.0 3.8E-10 1.3E-14 115.9 6.5 60 516-575 16-82 (322)
253 1ob3_A PFPK5, cell division co 99.0 2.9E-10 1E-14 114.8 5.6 50 526-575 3-54 (288)
254 2xir_A Vascular endothelial gr 99.0 7.7E-10 2.6E-14 113.2 8.8 58 518-575 20-84 (316)
255 2w4o_A Calcium/calmodulin-depe 99.0 2.3E-10 7.8E-15 118.9 4.9 51 523-575 51-102 (349)
256 1xbb_A Tyrosine-protein kinase 99.0 4.2E-10 1.4E-14 113.8 6.7 44 532-575 24-72 (291)
257 1mp8_A Focal adhesion kinase 1 99.0 8.8E-10 3E-14 110.8 8.9 50 526-575 16-70 (281)
258 3v5w_A G-protein coupled recep 99.0 2.8E-10 9.7E-15 125.2 5.5 36 524-559 188-224 (689)
259 3kex_A Receptor tyrosine-prote 99.0 3.7E-10 1.3E-14 116.2 5.9 34 576-609 186-220 (325)
260 3dzo_A Rhoptry kinase domain; 99.0 1.6E-10 5.4E-15 123.1 3.2 39 520-558 73-112 (413)
261 3ll6_A Cyclin G-associated kin 99.0 4.8E-10 1.6E-14 115.8 6.7 50 526-575 29-79 (337)
262 2clq_A Mitogen-activated prote 99.0 4.4E-10 1.5E-14 113.7 6.3 50 526-575 23-73 (295)
263 1kob_A Twitchin; kinase, intra 99.0 3.8E-10 1.3E-14 118.7 6.0 51 525-575 51-102 (387)
264 2izr_A Casein kinase I isoform 99.0 4.1E-10 1.4E-14 116.1 5.9 49 525-575 9-58 (330)
265 4e5w_A Tyrosine-protein kinase 99.0 6.4E-10 2.2E-14 113.0 7.2 49 527-575 23-77 (302)
266 2vx3_A Dual specificity tyrosi 98.9 3.7E-10 1.3E-14 119.0 5.2 57 518-575 47-104 (382)
267 2yfx_A Tyrosine-protein kinase 98.9 1.1E-09 3.9E-14 112.6 8.7 51 525-575 30-87 (327)
268 1u46_A ACK-1, activated CDC42 98.9 6.2E-10 2.1E-14 112.4 6.3 34 576-609 193-227 (291)
269 3o0g_A Cell division protein k 98.9 7.6E-10 2.6E-14 111.9 6.9 50 526-575 3-55 (292)
270 2i1m_A Macrophage colony-stimu 98.9 2E-09 6.8E-14 111.1 10.1 55 521-575 42-103 (333)
271 4euu_A Serine/threonine-protei 98.9 6.4E-10 2.2E-14 114.0 6.4 49 527-575 11-61 (319)
272 3f66_A Hepatocyte growth facto 98.9 1.5E-09 5.2E-14 110.0 9.1 49 527-575 27-80 (298)
273 3a62_A Ribosomal protein S6 ki 98.9 4.5E-10 1.5E-14 115.6 5.1 34 576-609 190-223 (327)
274 3txo_A PKC-L, NPKC-ETA, protei 98.9 3.5E-10 1.2E-14 117.5 4.1 51 525-575 23-77 (353)
275 1xjd_A Protein kinase C, theta 98.9 5.7E-10 1.9E-14 115.5 5.6 53 523-575 15-71 (345)
276 3h4j_B AMPK kdaid, SNF1-like p 98.9 6.6E-10 2.2E-14 114.5 6.1 51 525-575 9-63 (336)
277 2v62_A Serine/threonine-protei 98.9 3.9E-10 1.3E-14 117.0 4.4 35 576-610 229-263 (345)
278 2ivs_A Proto-oncogene tyrosine 98.9 4E-10 1.4E-14 115.2 4.4 34 576-609 221-255 (314)
279 2yex_A Serine/threonine-protei 98.9 7.4E-10 2.5E-14 110.9 6.2 50 526-575 8-59 (276)
280 3g33_A Cell division protein k 98.9 7.7E-10 2.6E-14 112.8 6.4 34 576-609 188-221 (308)
281 2x7f_A TRAF2 and NCK-interacti 98.9 5.6E-10 1.9E-14 114.8 5.4 63 512-575 11-74 (326)
282 3kvw_A DYRK2, dual specificity 98.9 6.1E-10 2.1E-14 119.1 5.9 34 576-609 268-301 (429)
283 3ork_A Serine/threonine protei 98.9 4.1E-10 1.4E-14 115.0 4.3 51 525-575 12-66 (311)
284 4h09_A Hypothetical leucine ri 98.9 2E-07 6.9E-12 97.8 25.1 213 120-340 136-356 (379)
285 2i0e_A Protein kinase C-beta I 98.9 5.2E-10 1.8E-14 116.2 5.1 51 525-575 20-74 (353)
286 4dc2_A Protein kinase C IOTA t 98.9 4.7E-10 1.6E-14 118.1 4.8 34 576-609 222-255 (396)
287 3uqc_A Probable conserved tran 98.9 1.2E-09 4E-14 110.1 7.5 51 525-575 31-85 (286)
288 1rjb_A FL cytokine receptor; k 98.9 8.3E-10 2.8E-14 114.5 6.5 34 576-609 243-277 (344)
289 4eut_A Serine/threonine-protei 98.9 1.6E-09 5.5E-14 114.6 8.7 49 527-575 11-61 (396)
290 3llt_A Serine/threonine kinase 98.9 7.8E-10 2.7E-14 115.5 6.0 64 511-575 21-85 (360)
291 2ac3_A MAP kinase-interacting 98.9 7.2E-10 2.5E-14 113.5 5.5 45 531-575 19-64 (316)
292 1tki_A Titin; serine kinase, m 98.9 8.2E-10 2.8E-14 113.3 5.8 51 524-575 4-55 (321)
293 2yab_A Death-associated protei 98.9 9.4E-10 3.2E-14 114.6 6.3 51 525-575 12-69 (361)
294 3kk8_A Calcium/calmodulin depe 98.9 1E-09 3.4E-14 110.5 6.3 52 524-575 5-59 (284)
295 2a19_B Interferon-induced, dou 98.9 1.3E-09 4.3E-14 109.6 7.1 33 576-608 190-222 (284)
296 2jam_A Calcium/calmodulin-depe 98.9 9.8E-10 3.4E-14 111.8 6.1 49 527-575 11-60 (304)
297 3a8x_A Protein kinase C IOTA t 98.9 8.1E-10 2.8E-14 114.5 5.6 50 526-575 10-63 (345)
298 2pmi_A Negative RE, cyclin-dep 98.9 9.4E-10 3.2E-14 112.7 6.0 52 524-575 4-57 (317)
299 1fot_A TPK1 delta, CAMP-depend 98.9 8.4E-10 2.9E-14 112.9 5.6 50 526-575 7-60 (318)
300 3fdn_A Serine/threonine-protei 98.9 8.4E-10 2.9E-14 110.7 5.5 53 523-575 7-63 (279)
301 4h09_A Hypothetical leucine ri 98.9 2E-07 7E-12 97.8 24.0 298 30-371 42-340 (379)
302 1rdq_E PKA C-alpha, CAMP-depen 98.9 8.1E-10 2.8E-14 114.7 5.4 50 526-575 42-95 (350)
303 3ttj_A Mitogen-activated prote 98.9 9.4E-10 3.2E-14 118.7 6.1 52 524-575 61-115 (464)
304 2j7t_A Serine/threonine-protei 98.9 1E-09 3.5E-14 111.5 6.1 51 525-575 19-70 (302)
305 2bdw_A Hypothetical protein K1 98.9 6.7E-10 2.3E-14 116.0 4.7 51 525-575 29-82 (362)
306 2y4i_B KSR2, HKSR2, kinase sup 98.9 5.1E-10 1.7E-14 114.7 3.8 81 582-681 218-309 (319)
307 3a7i_A MST3 kinase, serine/thr 98.9 1E-09 3.6E-14 111.5 6.0 50 526-575 23-74 (303)
308 4agu_A Cyclin-dependent kinase 98.9 1.3E-09 4.3E-14 111.3 6.7 50 526-575 4-56 (311)
309 3nsz_A CK II alpha, casein kin 98.9 1.2E-09 4.1E-14 112.5 6.5 48 525-575 36-84 (330)
310 2y0a_A Death-associated protei 98.9 1.3E-09 4.5E-14 112.0 6.7 49 527-575 13-68 (326)
311 3aln_A Dual specificity mitoge 98.9 2.1E-09 7E-14 110.7 8.2 49 525-573 22-72 (327)
312 3f3z_A Calcium/calmodulin-depe 98.9 1.3E-09 4.4E-14 109.2 6.4 49 527-575 11-60 (277)
313 3an0_A Dual specificity mitoge 98.9 1.4E-09 4.8E-14 112.6 6.8 53 522-574 48-102 (340)
314 2acx_A G protein-coupled recep 98.9 7.1E-10 2.4E-14 121.6 4.6 52 524-575 183-238 (576)
315 1blx_A Cyclin-dependent kinase 98.9 6.3E-10 2.2E-14 114.4 4.1 34 576-609 188-221 (326)
316 4fr4_A YANK1, serine/threonine 98.9 1.1E-09 3.8E-14 114.8 5.8 50 526-575 16-69 (384)
317 2y7j_A Phosphorylase B kinase 98.9 8.7E-10 3E-14 115.3 4.9 54 522-575 91-153 (365)
318 3c4z_A Rhodopsin kinase; Ser/T 98.9 9.1E-10 3.1E-14 120.3 5.2 51 525-575 185-239 (543)
319 2i6l_A Mitogen-activated prote 98.9 9.7E-10 3.3E-14 112.6 5.1 51 525-575 11-62 (320)
320 3cok_A Serine/threonine-protei 98.9 8.9E-10 3E-14 110.5 4.7 51 525-575 11-65 (278)
321 2r3i_A Cell division protein k 98.9 1.3E-09 4.3E-14 110.6 5.7 51 525-575 3-56 (299)
322 3bhy_A Death-associated protei 98.9 1.2E-09 4.3E-14 109.7 5.6 49 527-575 7-62 (283)
323 2zv2_A Calcium/calmodulin-depe 98.9 1.2E-09 4.1E-14 110.8 5.5 36 525-560 13-49 (298)
324 2eue_A Carbon catabolite derep 98.9 1.5E-09 5.1E-14 108.7 6.0 51 525-575 13-67 (275)
325 2fst_X Mitogen-activated prote 98.9 1.1E-09 3.8E-14 114.5 5.2 53 523-575 27-82 (367)
326 3qyz_A Mitogen-activated prote 98.9 1.3E-09 4.3E-14 114.1 5.6 54 522-575 24-79 (364)
327 3c0i_A Peripheral plasma membr 98.9 1.2E-09 4.1E-14 113.6 5.3 49 527-575 26-80 (351)
328 3kn6_A Ribosomal protein S6 ki 98.9 1.6E-09 5.4E-14 111.4 6.1 34 576-609 178-211 (325)
329 3byv_A Rhoptry kinase; malaria 98.9 5.7E-10 1.9E-14 117.3 2.7 35 524-558 72-107 (377)
330 2xrw_A Mitogen-activated prote 98.9 1.7E-09 5.9E-14 113.3 6.3 52 524-575 24-78 (371)
331 3lm5_A Serine/threonine-protei 98.9 2E-09 6.7E-14 110.8 6.6 45 531-575 35-82 (327)
332 2a2a_A Death-associated protei 98.9 2E-09 6.8E-14 110.4 6.6 49 527-575 14-69 (321)
333 3eqc_A Dual specificity mitoge 98.9 1.1E-09 3.8E-14 114.4 4.7 50 526-575 34-85 (360)
334 3pfq_A PKC-B, PKC-beta, protei 98.9 1.3E-09 4.5E-14 123.0 5.6 52 524-575 340-395 (674)
335 1cm8_A Phosphorylated MAP kina 98.9 1.4E-09 4.7E-14 113.8 5.3 52 524-575 24-78 (367)
336 4aaa_A Cyclin-dependent kinase 98.9 1.6E-09 5.6E-14 111.6 5.8 49 527-575 27-78 (331)
337 3mtl_A Cell division protein k 98.8 5.1E-10 1.8E-14 115.0 1.9 34 576-609 169-203 (324)
338 1vzo_A Ribosomal protein S6 ki 98.8 6.4E-10 2.2E-14 115.8 2.6 34 576-609 229-264 (355)
339 4exu_A Mitogen-activated prote 98.8 2.1E-09 7E-14 112.8 6.4 52 524-575 41-95 (371)
340 2vgo_A Serine/threonine-protei 98.8 1.6E-09 5.6E-14 108.9 5.4 50 526-575 15-68 (284)
341 3com_A Serine/threonine-protei 98.8 1.8E-09 6.2E-14 110.3 5.8 50 524-575 28-78 (314)
342 1fvr_A Tyrosine-protein kinase 98.8 4.5E-09 1.5E-13 108.1 8.5 34 576-609 210-244 (327)
343 4ejn_A RAC-alpha serine/threon 98.8 7.2E-10 2.5E-14 119.4 2.5 34 576-609 318-351 (446)
344 3gni_B Strad alpha; kinase fol 98.8 2E-09 6.8E-14 113.7 5.7 50 526-575 26-80 (389)
345 2rku_A Serine/threonine-protei 98.8 2E-09 6.8E-14 108.9 5.5 49 527-575 17-69 (294)
346 2j0j_A Focal adhesion kinase 1 98.8 4.4E-09 1.5E-13 118.3 8.8 51 525-575 390-445 (656)
347 1ua2_A CAK, cell division prot 98.8 2E-09 7E-14 111.6 5.5 53 523-575 8-66 (346)
348 2ra8_A Uncharacterized protein 98.8 1.8E-09 6E-14 111.8 4.8 154 265-423 168-341 (362)
349 3fme_A Dual specificity mitoge 98.8 2.3E-09 7.8E-14 108.1 5.4 34 576-609 178-215 (290)
350 3coi_A Mitogen-activated prote 98.8 2.9E-09 1E-13 110.8 6.3 52 524-575 23-77 (353)
351 3gbz_A Kinase, CMGC CDK; ssgci 98.8 1.5E-09 5.2E-14 111.8 3.9 52 524-575 33-87 (329)
352 3soa_A Calcium/calmodulin-depe 98.8 1.7E-09 5.7E-14 115.9 4.4 50 526-575 12-64 (444)
353 2b9h_A MAP kinase FUS3, mitoge 98.8 2.7E-09 9.2E-14 111.0 5.9 53 523-575 9-63 (353)
354 3mi9_A Cell division protein k 98.8 2.3E-09 8E-14 111.4 5.3 51 525-575 17-70 (351)
355 2owb_A Serine/threonine-protei 98.8 2.4E-09 8.1E-14 110.6 5.2 50 526-575 42-95 (335)
356 1j1b_A Glycogen synthase kinas 98.8 2.4E-09 8.3E-14 114.1 5.4 34 576-609 225-259 (420)
357 2ra8_A Uncharacterized protein 98.8 1.6E-09 5.4E-14 112.2 3.7 156 239-399 166-341 (362)
358 2r5t_A Serine/threonine-protei 98.8 1.4E-09 4.9E-14 113.7 3.5 34 576-609 208-241 (373)
359 2y94_A 5'-AMP-activated protei 98.8 2.8E-09 9.5E-14 115.0 5.8 50 526-575 17-70 (476)
360 3is5_A Calcium-dependent prote 98.8 2.6E-09 8.9E-14 107.5 5.2 49 527-575 24-74 (285)
361 2h6d_A 5'-AMP-activated protei 98.8 3.3E-09 1.1E-13 106.2 5.8 51 525-575 11-65 (276)
362 3i6u_A CDS1, serine/threonine- 98.8 1.9E-09 6.6E-14 114.9 4.3 52 524-575 134-194 (419)
363 3uc3_A Serine/threonine-protei 98.8 3.1E-09 1.1E-13 110.9 5.8 50 525-575 20-70 (361)
364 3dls_A PAS domain-containing s 98.8 6.5E-10 2.2E-14 114.8 0.5 34 576-609 198-232 (335)
365 1nxk_A MAP kinase-activated pr 98.8 4.7E-09 1.6E-13 111.1 7.0 34 576-609 232-265 (400)
366 1t4h_A Serine/threonine-protei 98.8 1.4E-08 4.9E-13 102.3 10.1 47 529-575 30-79 (290)
367 2wtk_C Serine/threonine-protei 98.8 5.2E-09 1.8E-13 106.4 6.8 51 525-575 5-60 (305)
368 3hko_A Calcium/calmodulin-depe 98.8 2.6E-09 9E-14 110.7 4.7 34 576-609 243-278 (345)
369 2w5a_A Serine/threonine-protei 98.8 3.2E-09 1.1E-13 106.4 5.1 51 525-575 6-59 (279)
370 2ycf_A Serine/threonine-protei 98.8 7.2E-09 2.5E-13 106.3 7.9 50 526-575 11-69 (322)
371 3rgf_A Cyclin-dependent kinase 98.8 3.1E-09 1.1E-13 112.9 5.1 34 576-609 204-238 (405)
372 3e3p_A Protein kinase, putativ 98.8 2.8E-09 9.6E-14 111.2 4.6 40 520-559 18-58 (360)
373 1z57_A Dual specificity protei 98.8 5.2E-09 1.8E-13 108.0 5.8 34 576-609 203-236 (339)
374 1phk_A Phosphorylase kinase; g 98.8 5.4E-09 1.9E-13 105.8 5.8 52 524-575 16-77 (298)
375 3nyv_A Calmodulin-domain prote 98.7 5.3E-09 1.8E-13 113.9 5.8 49 527-575 28-80 (484)
376 2wei_A Calmodulin-domain prote 98.7 7.1E-09 2.4E-13 104.4 6.2 50 526-575 23-75 (287)
377 3oz6_A Mitogen-activated prote 98.7 5.2E-09 1.8E-13 110.4 5.4 51 525-575 9-62 (388)
378 2vwi_A Serine/threonine-protei 98.7 4.5E-09 1.5E-13 106.7 4.3 51 524-574 14-66 (303)
379 3mwu_A Calmodulin-domain prote 98.7 6.7E-09 2.3E-13 113.1 5.9 49 527-575 24-75 (486)
380 2eu9_A Dual specificity protei 98.7 6.5E-09 2.2E-13 108.1 5.6 34 576-609 208-241 (355)
381 1q8y_A SR protein kinase; tran 98.7 7.4E-09 2.5E-13 108.6 5.8 35 576-610 204-238 (373)
382 3fhr_A MAP kinase-activated pr 98.7 4.6E-09 1.6E-13 108.4 4.1 34 576-609 198-231 (336)
383 2pml_X PFPK7, Ser/Thr protein 98.7 5.3E-09 1.8E-13 108.6 4.6 51 524-575 30-97 (348)
384 3qd2_B Eukaryotic translation 98.7 6E-09 2.1E-13 107.2 4.9 32 576-607 245-276 (332)
385 2dyl_A Dual specificity mitoge 98.7 5.9E-09 2E-13 106.7 4.6 37 525-561 25-62 (318)
386 3a99_A Proto-oncogene serine/t 98.7 2.1E-09 7.4E-14 110.1 1.1 33 576-608 217-250 (320)
387 3n9x_A Phosphotransferase; mal 98.7 9.5E-09 3.3E-13 110.0 6.2 52 524-575 25-79 (432)
388 3rp9_A Mitogen-activated prote 98.7 7.6E-09 2.6E-13 111.8 5.5 52 524-575 52-106 (458)
389 3q5i_A Protein kinase; CDPK, m 98.7 9.8E-09 3.3E-13 112.3 6.2 52 524-575 35-100 (504)
390 3eb0_A Putative uncharacterize 98.7 9.1E-09 3.1E-13 108.3 5.7 37 522-558 4-41 (383)
391 3lij_A Calcium/calmodulin depe 98.7 9.3E-09 3.2E-13 112.1 5.8 49 527-575 39-90 (494)
392 1wak_A Serine/threonine-protei 98.7 1.2E-08 4.2E-13 107.8 6.2 50 525-575 37-87 (397)
393 4e7w_A Glycogen synthase kinas 98.7 9.2E-09 3.2E-13 108.6 5.0 34 576-609 210-244 (394)
394 3q60_A ROP5B; pseudokinase, tr 98.7 1.2E-08 4E-13 107.0 5.5 35 576-610 260-296 (371)
395 2rio_A Serine/threonine-protei 98.7 1.4E-08 4.7E-13 108.8 5.9 44 529-575 19-62 (434)
396 3qa8_A MGC80376 protein; kinas 98.7 4E-09 1.4E-13 117.0 1.7 51 525-575 14-66 (676)
397 1x8b_A WEE1HU, WEE1-like prote 98.6 1.1E-08 3.7E-13 102.9 4.1 51 525-575 11-64 (289)
398 2iwi_A Serine/threonine-protei 98.6 6.8E-09 2.3E-13 105.9 2.6 37 523-559 29-66 (312)
399 2qr7_A Ribosomal protein S6 ki 98.6 5.8E-09 2E-13 107.9 2.0 34 576-609 189-222 (342)
400 3m2w_A MAP kinase-activated pr 98.6 3.6E-08 1.2E-12 99.9 5.8 29 581-609 172-200 (299)
401 3p23_A Serine/threonine-protei 98.6 2.4E-08 8.3E-13 106.6 4.0 33 576-608 195-231 (432)
402 2pzi_A Probable serine/threoni 98.5 3.2E-08 1.1E-12 112.3 2.4 51 525-575 80-133 (681)
403 1zy4_A Serine/threonine-protei 98.4 1.3E-07 4.4E-12 95.7 4.7 49 526-575 7-56 (303)
404 1io0_A Tropomodulin; LRR prote 98.3 2.5E-07 8.7E-12 86.1 3.0 112 217-328 32-163 (185)
405 3rw6_A Nuclear RNA export fact 98.3 4.6E-07 1.6E-11 88.8 4.4 106 8-126 139-258 (267)
406 3rw6_A Nuclear RNA export fact 98.2 1.9E-07 6.6E-12 91.4 0.4 78 339-418 169-257 (267)
407 1io0_A Tropomodulin; LRR prote 98.2 5.2E-07 1.8E-11 84.0 2.2 118 138-257 31-163 (185)
408 3e4g_A ATP synthase subunit S, 97.9 1.8E-06 6.2E-11 78.3 1.4 91 2-92 53-149 (176)
409 3e4g_A ATP synthase subunit S, 97.7 1E-05 3.4E-10 73.4 2.2 82 341-422 62-149 (176)
410 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00087 3E-08 61.8 4.3 85 219-303 39-136 (197)
411 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00076 2.6E-08 62.3 2.0 19 168-186 66-84 (197)
412 3rfe_A Platelet glycoprotein I 96.3 0.0086 2.9E-07 51.4 6.9 57 368-426 12-69 (130)
413 1zar_A RIO2 kinase; serine kin 96.1 0.008 2.7E-07 59.5 6.8 62 518-579 83-162 (282)
414 3rfe_A Platelet glycoprotein I 96.1 0.0077 2.6E-07 51.7 5.7 12 318-329 33-44 (130)
415 2vuw_A Serine/threonine-protei 96.1 0.0047 1.6E-07 62.9 5.1 52 527-579 22-81 (336)
416 1zth_A RIO1 serine protein kin 94.7 0.03 1E-06 54.5 5.5 31 529-559 51-84 (258)
417 3en9_A Glycoprotease, O-sialog 94.6 0.041 1.4E-06 59.9 6.7 50 528-578 339-396 (540)
418 4gyi_A RIO2 kinase; protein ki 92.7 0.082 2.8E-06 54.3 4.4 33 527-559 97-129 (397)
419 3d1u_A Putative fructosamine-3 89.5 0.27 9.4E-06 48.4 4.5 76 529-606 19-97 (288)
420 4azs_A Methyltransferase WBDD; 78.9 0.47 1.6E-05 51.8 0.6 43 533-575 242-295 (569)
421 3f7w_A Putative fructosamine-3 75.7 2.9 0.0001 40.8 5.3 49 530-578 20-68 (288)
422 2ks1_B Epidermal growth factor 67.7 5.8 0.0002 26.1 3.4 8 490-497 32-39 (44)
423 2jwa_A Receptor tyrosine-prote 65.3 4.2 0.00014 26.7 2.4 7 491-497 33-39 (44)
424 2vuw_A Serine/threonine-protei 63.5 1.1 3.8E-05 45.0 -1.0 32 576-608 246-278 (336)
425 2l2t_A Receptor tyrosine-prote 57.8 7 0.00024 25.6 2.4 10 489-498 30-39 (44)
426 1nd4_A Aminoglycoside 3'-phosp 49.0 13 0.00045 35.0 4.1 39 534-575 29-67 (264)
427 2lz0_A Uncharacterized protein 48.9 40 0.0014 26.6 6.2 45 22-67 8-52 (100)
428 3tm0_A Aminoglycoside 3'-phosp 45.2 20 0.00069 33.9 4.8 51 525-576 14-64 (263)
429 2lz0_A Uncharacterized protein 33.4 82 0.0028 24.7 5.8 44 234-278 9-52 (100)
430 2olc_A MTR kinase, methylthior 31.7 48 0.0016 33.6 5.3 47 531-577 36-90 (397)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-58 Score=534.92 Aligned_cols=450 Identities=35% Similarity=0.543 Sum_probs=376.1
Q ss_pred cCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCC
Q 042662 6 LGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLK 85 (690)
Q Consensus 6 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 85 (690)
+.++++|++|+|++|.+++.+|. ++++++|++|+|++|.+++.+|..|+++++|++|++++|++.+.+|.. .+++|+
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCC
T ss_pred cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCC
Confidence 36777788888888887776665 777788888888888777777777777777777777777777766654 677777
Q ss_pred EEecCCCC------------CCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCcc-ccCCCCCCEEEccC
Q 042662 86 SLYLHNVR------------LPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNT-FGSLRNLEWLSLND 152 (690)
Q Consensus 86 ~L~l~~~~------------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~ 152 (690)
+|++++|. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|.. |.++++|++|++++
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~ 352 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCS
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcC
Confidence 77777761 266777777777777777777777777777777777777666654 66777777777777
Q ss_pred CcCCCcCCC-C-------C------------cccCCCC--CCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCccc
Q 042662 153 NYLTSSTPK-L-------S------------FLSSLSN--CKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNIS 210 (690)
Q Consensus 153 n~l~~~~~~-~-------~------------~l~~l~~--l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 210 (690)
|.+.+..+. + . ....+.. +++|+.|++++|.+++.+|..+..+. +|++|++++|+++
T Consensus 353 n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLS 431 (768)
T ss_dssp SEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEE
T ss_pred CccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCccc
Confidence 766543210 0 0 0122333 67889999999999888999998887 8999999999999
Q ss_pred ccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCccccc
Q 042662 211 GSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSG 290 (690)
Q Consensus 211 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 290 (690)
+.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..++
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 511 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeCCCCccCc-ccccccccCCCceeeccCCcccCCCCCCc---------------------------------
Q 042662 291 NLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSNSFTGPLPLKI--------------------------------- 336 (690)
Q Consensus 291 ~l~~L~~L~L~~n~l~~-~p~~~~~~~~L~~L~L~~n~l~~~~~~~~--------------------------------- 336 (690)
.+++|+.|++++|++++ +|..+..+++|+.|++++|.++|.+|..+
T Consensus 512 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (768)
T 3rgz_A 512 RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591 (768)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence 99999999999999987 88889999999999999999887776543
Q ss_pred -------------------------------------cCCcccceeeccccccccccCccccCCCCCCeeeccCcccccc
Q 042662 337 -------------------------------------GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 337 -------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
+.++.|+.||+++|+++|.+|..++.++.|+.|+|++|+++|.
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred cccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 3457789999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCCCCccccccCCCCCCCCCCCCCcCc
Q 042662 380 IPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKGNELLCGMPNLQVLSC 459 (690)
Q Consensus 380 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~l~~~~~ 459 (690)
+|..++.+++|+.|||++|+++|.+|..+..+++|+.|++++|+++|.+|..+.|..+...+|.||+.+||.| +. .|
T Consensus 672 ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~-l~--~C 748 (768)
T 3rgz_A 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP-LP--RC 748 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT-SC--CC
T ss_pred CChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC-Cc--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975 33 67
Q ss_pred ccc
Q 042662 460 RTN 462 (690)
Q Consensus 460 ~~~ 462 (690)
...
T Consensus 749 ~~~ 751 (768)
T 3rgz_A 749 DPS 751 (768)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.9e-54 Score=495.37 Aligned_cols=442 Identities=29% Similarity=0.438 Sum_probs=363.0
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCc--cccCCCCCCEEECcCCcccccCCccc-CCCCCCCeeecccCcCcccCCcc-
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPS--SIFNLSSLSSLDLSDNSLTGEIPYEI-GNLHNLEWMAFSFNKLVGVVPTA- 77 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~- 77 (690)
+|+.|+++++|++|+|++|.+.|.+|. .++++++|++|+|++|.+++.+|..+ +++++|++|++++|++++..|..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 457899999999999999999998998 89999999999999999998888876 89999999999999999988877
Q ss_pred --ccCCCCCCEEecCCC---------CCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 042662 78 --IFNVSTLKSLYLHNV---------RLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLE 146 (690)
Q Consensus 78 --l~~l~~L~~L~l~~~---------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 146 (690)
+.++++|++|++++| .+++|++|++++|.+++.+|. +.++++|++|++++|.+++.+|..|+++++|+
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 250 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence 889999999999998 578999999999999988887 99999999999999999999999999999999
Q ss_pred EEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEE
Q 042662 147 WLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAI 226 (690)
Q Consensus 147 ~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 226 (690)
+|++++|.+.+..+ .. .+++|++|++++|.+++.+|..+....++|++|++++|++++.+|..++.+++|+.|
T Consensus 251 ~L~Ls~n~l~~~~~------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 251 LLNISSNQFVGPIP------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp EEECCSSCCEESCC------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred EEECCCCcccCccC------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 99999999987652 22 678888888888888888888877653378888888888888888888888888888
Q ss_pred ECCCCcCcccchhh-hcCCCCCCEEeCcCCcCcccCCccccCCC-CCCEEEeeCCcCcccCcccccC--CCCCCeeeCCC
Q 042662 227 YLGRNKLNGSIPIA-LGKLKKLQLLSLEDNQLEGSIPDNLCGLA-ALFQLDLGGNKLCGFIPACSGN--LTNLRKLYLGS 302 (690)
Q Consensus 227 ~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~ 302 (690)
++++|.+++.+|.. +..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+.. +++|+.|++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 88888888777765 78888888888888888888888777776 7888888888877777766655 67777777777
Q ss_pred CccCc-ccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCC
Q 042662 303 NQLTS-IPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381 (690)
Q Consensus 303 n~l~~-~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 381 (690)
|.+++ +|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++.+|
T Consensus 404 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCC
Confidence 77775 67777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC-CCCCCCccccccCCCCCCCC
Q 042662 382 NSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE-GPFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 382 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 451 (690)
..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.. ..++.+..+.+.+|+..+..
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 77777777777777777777777777777777777777777777777643 33455556666666554443
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.5e-50 Score=453.84 Aligned_cols=445 Identities=21% Similarity=0.219 Sum_probs=321.7
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. +++++|+|++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 454443 257777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCEEecCCC-----------CCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCC--EE
Q 042662 82 STLKSLYLHNV-----------RLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLE--WL 148 (690)
Q Consensus 82 ~~L~~L~l~~~-----------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L 148 (690)
++|++|++++| .+++|++|++++|.+.+..++.+..+++|++|++++|.+++..|..|+.+++|+ .|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 77777777776 345677777777777764333344477777777777777776677777777777 67
Q ss_pred EccCCcCCCcCCCCCc----------------------------------------------------------------
Q 042662 149 SLNDNYLTSSTPKLSF---------------------------------------------------------------- 164 (690)
Q Consensus 149 ~L~~n~l~~~~~~~~~---------------------------------------------------------------- 164 (690)
++++|.+.+..+....
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 7777766554321100
Q ss_pred ------ccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccch
Q 042662 165 ------LSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIP 238 (690)
Q Consensus 165 ------l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 238 (690)
...+..+++|+.|++++|.++ .+|..+..+. +|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 022556677777777777766 5666666665 67777777777776666677777777777777777765554
Q ss_pred h-hhcCCCCCCEEeCcCCcCcccC--CccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc-c-cccc
Q 042662 239 I-ALGKLKKLQLLSLEDNQLEGSI--PDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI-P-STLW 313 (690)
Q Consensus 239 ~-~l~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-p-~~~~ 313 (690)
. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++. | ..+.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 4 3677777777777777777654 56677777888888888877777777777778888888888877763 3 3367
Q ss_pred ccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccc---cCccccCCCCCCeeeccCccccccCCcccCCCCCC
Q 042662 314 NLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV---IPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISL 390 (690)
Q Consensus 314 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 390 (690)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++..|..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 778888888888888777777778888888888888887762 23557778888888888888887778888888888
Q ss_pred CEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC-CCCCCCccccccCCCCCCCC
Q 042662 391 KSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE-GPFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 391 ~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~ 451 (690)
+.|++++|++++..|..+..++.| .|++++|++++..|.. ..+..+..+.+.+|++.|.+
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 888888888888888888888888 8888888888666542 33456677778888877754
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-48 Score=456.15 Aligned_cols=436 Identities=24% Similarity=0.238 Sum_probs=304.9
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccC-CcccCCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 042662 8 NLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEI-PYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKS 86 (690)
Q Consensus 8 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 86 (690)
-.++|++|+|++|.+++..|.+|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+.+..|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3467777888888777777777777778888888777554444 667777777888888877777777777777777777
Q ss_pred EecCCC-------------CCCCCCEEeccCCccCccCC-ccccCCCCCCeEecccCcccccCCccccCC--CCCCEEEc
Q 042662 87 LYLHNV-------------RLPNLEELLLWGNNFSGTIP-SFIFNASKLFTLGLEENSFSGFIPNTFGSL--RNLEWLSL 150 (690)
Q Consensus 87 L~l~~~-------------~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L 150 (690)
|++++| .+++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..|..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 777776 24467777777777776544 457777777777777777777777666665 66777777
Q ss_pred cCCcCCCcCCCCCcccCCCCCC------CCCEEEccCCcCCCCCChhhhhc-----------------------------
Q 042662 151 NDNYLTSSTPKLSFLSSLSNCK------YLEYFGFYNNPLGGILPRAIGNL----------------------------- 195 (690)
Q Consensus 151 ~~n~l~~~~~~~~~l~~l~~l~------~L~~L~l~~n~l~~~~p~~~~~~----------------------------- 195 (690)
++|.+.+..+ ..+..++ .|+.|++++|.+++..+..+...
T Consensus 182 ~~n~l~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~ 256 (844)
T 3j0a_A 182 AANSLYSRVS-----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD 256 (844)
T ss_dssp CCSBSCCCCC-----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGG
T ss_pred CCCccccccc-----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCC
Confidence 7776655431 1122222 36666666665555444333221
Q ss_pred --------cccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccC
Q 042662 196 --------SQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCG 267 (690)
Q Consensus 196 --------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 267 (690)
..+|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..|..
T Consensus 257 ~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 336 (844)
T 3j0a_A 257 QNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG 336 (844)
T ss_dssp GTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS
T ss_pred hhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC
Confidence 124666666666666555556666666666666666666555556666666666666666666555556666
Q ss_pred CCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccc-------------------c------------------
Q 042662 268 LAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-------------------S------------------ 310 (690)
Q Consensus 268 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p-------------------~------------------ 310 (690)
+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++++ .
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 666666666666665555555555666666666655554432 1
Q ss_pred ----cccccCCCceeeccCCcccCCCCC-CccCCcccceeeccccccc-----cccCccccCCCCCCeeeccCccccccC
Q 042662 311 ----TLWNLKDILHLNLSSNSFTGPLPL-KIGNFNVLIQLDLSMNNFS-----GVIPTKIGGLKDLQYLFLEYNRLQGSI 380 (690)
Q Consensus 311 ----~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~ 380 (690)
.+..+++|+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..+.++++|+.|+|++|++++..
T Consensus 417 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 496 (844)
T 3j0a_A 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLP 496 (844)
T ss_dssp TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCC
T ss_pred chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccC
Confidence 123567788888888888754433 3456788888999988886 344566888999999999999999999
Q ss_pred CcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCCCCccccccCCCCCCCCC
Q 042662 381 PNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKGNELLCGMP 452 (690)
Q Consensus 381 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 452 (690)
|..+..+++|+.|+|++|++++..+..+. ++|+.|++++|++++.+|.. +..+..+.+.+|++.|.++
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 497 PGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp TTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 99999999999999999999987776665 78999999999999988854 6788888999999999764
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9e-48 Score=440.95 Aligned_cols=449 Identities=23% Similarity=0.260 Sum_probs=280.0
Q ss_pred cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCC
Q 042662 4 VELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVST 83 (690)
Q Consensus 4 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 83 (690)
.+|+++++|++|+|++|.+++..+.+|+++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..++++++
T Consensus 67 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 146 (680)
T 1ziw_A 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146 (680)
T ss_dssp THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence 33445555555555555555333334555555555555555555444455555555555555555555555555555555
Q ss_pred CCEEecCCCC-------------CCCCCEEeccCCccCccCCcccc----------------------------------
Q 042662 84 LKSLYLHNVR-------------LPNLEELLLWGNNFSGTIPSFIF---------------------------------- 116 (690)
Q Consensus 84 L~~L~l~~~~-------------l~~L~~L~L~~n~l~~~~p~~l~---------------------------------- 116 (690)
|++|++++|. +++|+.|++++|.+++..|..+.
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 6666555551 23455555555555544443222
Q ss_pred -----------------CCC--CCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCC-C--------------
Q 042662 117 -----------------NAS--KLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPK-L-------------- 162 (690)
Q Consensus 117 -----------------~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-------------- 162 (690)
.++ +|++|++++|.+++..|..|+++++|++|++++|.+.+..+. +
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred EEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 221 245555555555544444455555555555555544433210 0
Q ss_pred -----------Ccc--cCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCccccc--CcccccC--CCCCCE
Q 042662 163 -----------SFL--SSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGS--IPEEISN--LTNLIA 225 (690)
Q Consensus 163 -----------~~l--~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~--~p~~l~~--l~~L~~ 225 (690)
|.+ ..+..+++|+.|++++|.+++..+..+..+. +|++|++++|.+... .+..+.. .++|+.
T Consensus 307 ~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp BCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc-CCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 000 0122333333333333333333333333333 333333333332111 0011111 134445
Q ss_pred EECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCc
Q 042662 226 IYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIP-DNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQ 304 (690)
Q Consensus 226 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 304 (690)
|++++|.+++..|.+|..+++|+.|++++|.+.+.+| ..|.++++|++|++++|++.+..+..+..+++|+.|++++|.
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 5555556666666677777777777777777776555 567777777777777777777777777778888888888887
Q ss_pred cCc---ccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC--------ccccCCCCCCeeeccC
Q 042662 305 LTS---IPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP--------TKIGGLKDLQYLFLEY 373 (690)
Q Consensus 305 l~~---~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~ 373 (690)
+.. +|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+ ..+.++++|+.|+|++
T Consensus 466 l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 466 LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 753 67778888999999999999998777788899999999999999886532 2367889999999999
Q ss_pred ccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC-C-CCCCCccccccCCCCCCCC
Q 042662 374 NRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE-G-PFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 374 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~-~~~~~~~~~~~~n~~lc~~ 451 (690)
|+++...+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++..|.. + .++.+..+.+.+|++.|.+
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 9998555567899999999999999999777777888999999999999998866542 1 4677888899999999987
Q ss_pred CC
Q 042662 452 PN 453 (690)
Q Consensus 452 ~~ 453 (690)
+.
T Consensus 626 ~~ 627 (680)
T 1ziw_A 626 ES 627 (680)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-48 Score=435.28 Aligned_cols=420 Identities=22% Similarity=0.209 Sum_probs=369.6
Q ss_pred CcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCC
Q 042662 3 PVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVS 82 (690)
Q Consensus 3 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 82 (690)
|.+|+++++|++|+|++|.+.+..|.+|.++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..+++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 56789999999999999999988888999999999999999999888888999999999999999999877677888899
Q ss_pred CCCEEecCCCC-----------CCCCCEEeccCCccCccCCccccCCCCCC--eEecccCcccccC--------------
Q 042662 83 TLKSLYLHNVR-----------LPNLEELLLWGNNFSGTIPSFIFNASKLF--TLGLEENSFSGFI-------------- 135 (690)
Q Consensus 83 ~L~~L~l~~~~-----------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n~l~~~~-------------- 135 (690)
+|++|++++|. +++|++|++++|.+++..|..+..+++|+ .|++++|.+++..
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l 209 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC
T ss_pred cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc
Confidence 99999998872 35788888888888876676666676666 5666666555433
Q ss_pred -------------------------------------------------------------CccccCCCCCCEEEccCCc
Q 042662 136 -------------------------------------------------------------PNTFGSLRNLEWLSLNDNY 154 (690)
Q Consensus 136 -------------------------------------------------------------~~~~~~l~~L~~L~L~~n~ 154 (690)
+..|+++++|++|++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 289 (606)
T 3t6q_A 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289 (606)
T ss_dssp TTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC
T ss_pred CCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc
Confidence 3446777888999999988
Q ss_pred CCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCccc-ccCCCCCCEEECCCCcC
Q 042662 155 LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEE-ISNLTNLIAIYLGRNKL 233 (690)
Q Consensus 155 l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l 233 (690)
+...+ ..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+.+|.. +..+++|+.|++++|.+
T Consensus 290 l~~lp------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 290 LSELP------SGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp CSCCC------SSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred cCCCC------hhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 87543 5688899999999999999988888898887 9999999999998777654 89999999999999999
Q ss_pred cccc--hhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcc-cccCCCCCCeeeCCCCccCc-cc
Q 042662 234 NGSI--PIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPA-CSGNLTNLRKLYLGSNQLTS-IP 309 (690)
Q Consensus 234 ~~~~--p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~p 309 (690)
++.. +..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ .|
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 9776 77899999999999999999999899999999999999999999887654 48899999999999999998 56
Q ss_pred ccccccCCCceeeccCCcccCC---CCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCC
Q 042662 310 STLWNLKDILHLNLSSNSFTGP---LPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGD 386 (690)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 386 (690)
..+..+++|+.|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 6788999999999999999862 3356889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCC
Q 042662 387 LISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPR 430 (690)
Q Consensus 387 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 430 (690)
++.| .|++++|.+++..|..+..+++|+.+++++|++.|.++.
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999 999999999999999999999999999999999987763
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.2e-48 Score=436.33 Aligned_cols=440 Identities=20% Similarity=0.206 Sum_probs=351.8
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
+|..+. +++++|+|++|.+++..+.+|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..|+++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 455443 788999999999988888888999999999999999888888888999999999999999988888889999
Q ss_pred CCCCEEecCCC-----------CCCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccCCccccCCCCCC---
Q 042662 82 STLKSLYLHNV-----------RLPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLE--- 146 (690)
Q Consensus 82 ~~L~~L~l~~~-----------~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--- 146 (690)
++|++|++++| .+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+..|+.+++|+
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 99999999887 35678899999998876 5688888899999999999988887777666555443
Q ss_pred -EEEccCCcCCCcCCCCC--------------------------------------------------------------
Q 042662 147 -WLSLNDNYLTSSTPKLS-------------------------------------------------------------- 163 (690)
Q Consensus 147 -~L~L~~n~l~~~~~~~~-------------------------------------------------------------- 163 (690)
+|++++|.+.+..+...
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 263 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEE
T ss_pred ceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccH
Confidence 56666666554331100
Q ss_pred -------------cccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCC
Q 042662 164 -------------FLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGR 230 (690)
Q Consensus 164 -------------~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 230 (690)
..+.+..+++|+.|++++|.+.. +| .+..+. +|++|++++|.+ +.+| .+ .+++|+.|++++
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~ 337 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTM 337 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESCCC-SSCC-CC-CCSSCCEEEEES
T ss_pred hheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccccC-cccc-cC-CCCccceeeccC
Confidence 00113445566666666666542 33 455554 677777777777 5666 34 778888888888
Q ss_pred CcCcccchhhhcCCCCCCEEeCcCCcCccc--CCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc
Q 042662 231 NKLNGSIPIALGKLKKLQLLSLEDNQLEGS--IPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI 308 (690)
Q Consensus 231 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 308 (690)
|...+.. .+..+++|++|++++|.+++. +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.++
T Consensus 338 n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~ 414 (606)
T 3vq2_A 338 NKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV 414 (606)
T ss_dssp CSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred CcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence 7555433 567888999999999988865 47788899999999999999876 457788899999999999999985
Q ss_pred c--ccccccCCCceeeccCCcccCCCCCCccCCcccceeecccccccc-ccCccccCCCCCCeeeccCccccccCCcccC
Q 042662 309 P--STLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG-VIPTKIGGLKDLQYLFLEYNRLQGSIPNSIG 385 (690)
Q Consensus 309 p--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 385 (690)
+ ..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 415 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 415 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 4 478889999999999999999899999999999999999999998 4788899999999999999999999999999
Q ss_pred CCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCC-CCccccccCCCCCCCCC
Q 042662 386 DLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFR-NFSAESFKGNELLCGMP 452 (690)
Q Consensus 386 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~-~~~~~~~~~n~~lc~~~ 452 (690)
.+++|++|++++|++++..|..+..+++|+.|++++|+++...+....+. .+..+.+.+|++.|.++
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999889999999999999999999984333323343 47778899999988764
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.9e-48 Score=435.07 Aligned_cols=415 Identities=17% Similarity=0.251 Sum_probs=195.1
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEECcCCccc------c---------------------------cCCcccC-
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLT------G---------------------------EIPYEIG- 55 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~---------------------------~~p~~~~- 55 (690)
.+++.|+|++|.+.|.+|++++++++|++|+|++|.+. + .+|..++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47899999999999999999999999999999999551 1 0000000
Q ss_pred ------------------CCCCCCeeecc--cCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCcc-----
Q 042662 56 ------------------NLHNLEWMAFS--FNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGT----- 110 (690)
Q Consensus 56 ------------------~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~----- 110 (690)
....++.+.+. .|++++ +|..++++++ |++|+|++|.+++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~-------------L~~L~Ls~n~l~~~~~~~~ 226 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTK-------------LRQFYMGNSPFVAENICEA 226 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTT-------------CCEEEEESCCCCGGGBSSS
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccC-------------CCEEECcCCcccccccccc
Confidence 00111111111 344554 5555555443 23333333333332
Q ss_pred ------------CCcccc--CCCCCCeEecccCcccccCCccccCCCCCCEEEccCCc-CCC-cCC-CCCcccCCCCCCC
Q 042662 111 ------------IPSFIF--NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY-LTS-STP-KLSFLSSLSNCKY 173 (690)
Q Consensus 111 ------------~p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~-~~~~l~~l~~l~~ 173 (690)
+|..++ ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ ..+ .+..+..+..+++
T Consensus 227 ~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306 (636)
T ss_dssp CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT
T ss_pred ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC
Confidence 444444 44445555555444444444444444455555554444 433 110 0000001112244
Q ss_pred CCEEEccCCcCCCCCCh--hhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCC-CCEE
Q 042662 174 LEYFGFYNNPLGGILPR--AIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKK-LQLL 250 (690)
Q Consensus 174 L~~L~l~~n~l~~~~p~--~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L 250 (690)
|+.|++++|.++ .+|. .+..+. +|++|++++|+++|.+| .++.+++|+.|++++|.++ .+|..+..+++ |++|
T Consensus 307 L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 307 IQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp CCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 444555544444 4444 444443 44555555554444444 4444444455555544444 34444444444 5555
Q ss_pred eCcCCcCcccCCccccCCC--CCCEEEeeCCcCcccCccccc-------CCCCCCeeeCCCCccCccccccc-ccCCCce
Q 042662 251 SLEDNQLEGSIPDNLCGLA--ALFQLDLGGNKLCGFIPACSG-------NLTNLRKLYLGSNQLTSIPSTLW-NLKDILH 320 (690)
Q Consensus 251 ~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~p~~~~-~~~~L~~ 320 (690)
++++|.++ .+|..+..++ +|+.|++++|.+++.+|..+. .+++|+.|++++|.++.+|..+. .+++|+.
T Consensus 383 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSE
T ss_pred EccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCE
Confidence 55544444 3444443322 444455555544444444444 34444445555554444444322 2444445
Q ss_pred eeccCCcccCCCCCCccC--------CcccceeeccccccccccCcccc--CCCCCCeeeccCccccccCCcccCCCCCC
Q 042662 321 LNLSSNSFTGPLPLKIGN--------FNVLIQLDLSMNNFSGVIPTKIG--GLKDLQYLFLEYNRLQGSIPNSIGDLISL 390 (690)
Q Consensus 321 L~L~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 390 (690)
|++++|.++ .+|..... +++|+.|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|
T Consensus 462 L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 462 INLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTL 538 (636)
T ss_dssp EECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSC
T ss_pred EECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCC
Confidence 555544444 23322211 114444555555444 3444443 44445555555554443 44444444455
Q ss_pred CEEEC------cCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCCCCccccccCCCCC
Q 042662 391 KSLNL------SNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKGNELL 448 (690)
Q Consensus 391 ~~L~L------s~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~l 448 (690)
+.|++ ++|.+.+.+|..+..+++|+.|++++|++ +.+|.. .++.+..+.+.+|+..
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNI 600 (636)
T ss_dssp CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTC
T ss_pred CEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCc
Confidence 55544 23444444444444444555555555544 334432 1234444444444443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-46 Score=423.34 Aligned_cols=418 Identities=22% Similarity=0.184 Sum_probs=344.6
Q ss_pred cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCC
Q 042662 4 VELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVST 83 (690)
Q Consensus 4 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 83 (690)
.+|+++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..|..++++++
T Consensus 50 ~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 50 YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 46888888888888888888777888888888888888888888777888888888888888888888777677888888
Q ss_pred CCEEecCCC------------CCCCCCEEeccCCccCccCCccccCCCCCC----eEecccCcccccCCccccCCCCCCE
Q 042662 84 LKSLYLHNV------------RLPNLEELLLWGNNFSGTIPSFIFNASKLF----TLGLEENSFSGFIPNTFGSLRNLEW 147 (690)
Q Consensus 84 L~~L~l~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~ 147 (690)
|++|++++| .+++|++|++++|.+++..|..+..+.+|+ +|++++|.+++..+..+... +|++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~ 208 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHE 208 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeee
Confidence 888888877 345778888888888776666665554443 56666666655444333332 4455
Q ss_pred EEccCCcCCC----------------------------------------------------------cC----------
Q 042662 148 LSLNDNYLTS----------------------------------------------------------ST---------- 159 (690)
Q Consensus 148 L~L~~n~l~~----------------------------------------------------------~~---------- 159 (690)
|++++|.+.+ ..
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 5544443320 00
Q ss_pred ------CCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcC
Q 042662 160 ------PKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKL 233 (690)
Q Consensus 160 ------~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 233 (690)
..+..++.+..+++|+.|++++|.+ +.+| .+ .++ +|++|++++|...+.+ .+..+++|+.|++++|.+
T Consensus 289 ~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 289 AMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp EEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE
T ss_pred EEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCC-ccceeeccCCcCccch--hhccCCCCCEEECcCCcc
Confidence 0011124677889999999999999 7788 44 665 9999999999766554 577999999999999999
Q ss_pred ccc--chhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCc-ccccCCCCCCeeeCCCCccCc-cc
Q 042662 234 NGS--IPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIP-ACSGNLTNLRKLYLGSNQLTS-IP 309 (690)
Q Consensus 234 ~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~p 309 (690)
++. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++ .|
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 876 38889999999999999999885 66889999999999999999998887 688999999999999999998 67
Q ss_pred ccccccCCCceeeccCCcccC-CCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCC
Q 042662 310 STLWNLKDILHLNLSSNSFTG-PLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLI 388 (690)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 388 (690)
..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+|..+..++
T Consensus 442 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 788999999999999999998 4788999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEECcCCcCcccCChhhhcCC-CCCEEEcCCCcCcccCCC
Q 042662 389 SLKSLNLSNNNLSGTIPISLEKLL-DLKEINVSFNNLEGEIPR 430 (690)
Q Consensus 389 ~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~l~ls~n~l~~~~p~ 430 (690)
+|++||+++|+++ .+|..+..++ +|+.+++++|++.|.++.
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999999999999 6777788887 599999999999988775
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-46 Score=420.02 Aligned_cols=436 Identities=22% Similarity=0.242 Sum_probs=371.8
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. +++++|+|++|.+++..+.+|.++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 565443 579999999999998888899999999999999999998888899999999999999999998888999999
Q ss_pred CCCCEEecCCC-----------CCCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccCCccccCCCCC----
Q 042662 82 STLKSLYLHNV-----------RLPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNL---- 145 (690)
Q Consensus 82 ~~L~~L~l~~~-----------~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L---- 145 (690)
++|++|++++| .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 99999999988 45689999999999987 479999999999999999999998888888888888
Q ss_pred CEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCC-------------------------------------------
Q 042662 146 EWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNN------------------------------------------- 182 (690)
Q Consensus 146 ~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n------------------------------------------- 182 (690)
+.|++++|.+.+..+ ..+..+ +|+.|++++|
T Consensus 180 ~~L~l~~n~l~~~~~-----~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 180 LSLDLSLNPMNFIQP-----GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CEEECTTCCCCEECT-----TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred hhcccCCCCceecCH-----HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 899999998887652 222222 4666655554
Q ss_pred ---------------cCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCC
Q 042662 183 ---------------PLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKL 247 (690)
Q Consensus 183 ---------------~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 247 (690)
.+.+..|..+..+. +|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..+++|
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L 327 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSL 327 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSC
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cccccc
Confidence 34455566666666 8999999999888 577778888 9999999999888 4554 477889
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccC--cccccCCCCCCeeeCCCCccCcccccccccCCCceeeccC
Q 042662 248 QLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFI--PACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSS 325 (690)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~ 325 (690)
+.|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+++..+..+++|+.|++++
T Consensus 328 ~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 405 (570)
T 2z63_A 328 KRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405 (570)
T ss_dssp CEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT
T ss_pred CEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccC
Confidence 9999999988876654 67899999999999988764 6678889999999999999999877788899999999999
Q ss_pred CcccCCCC-CCccCCcccceeeccccccccccCccccCCCCCCeeeccCcccc-ccCCcccCCCCCCCEEECcCCcCccc
Q 042662 326 NSFTGPLP-LKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQ-GSIPNSIGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 326 n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~ 403 (690)
|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++.
T Consensus 406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 99987766 56788999999999999999888999999999999999999997 57889999999999999999999988
Q ss_pred CChhhhcCCCCCEEEcCCCcCcccCCCC-CCCCCCccccccCCCCCCCCCC
Q 042662 404 IPISLEKLLDLKEINVSFNNLEGEIPRE-GPFRNFSAESFKGNELLCGMPN 453 (690)
Q Consensus 404 ~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~~~~~~~~~~~n~~lc~~~~ 453 (690)
.|..+..+++|+.|++++|++++..|.. ..++.+..+.+.+|+..|.++.
T Consensus 486 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8999999999999999999999876643 4567778888999998887654
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-45 Score=419.97 Aligned_cols=423 Identities=21% Similarity=0.238 Sum_probs=317.9
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++
T Consensus 19 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 19 VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 565554 689999999999998777789999999999999999998888889999999999999999986655679999
Q ss_pred CCCCEEecCCC-----------CCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCcccc--CCCCCCEE
Q 042662 82 STLKSLYLHNV-----------RLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFG--SLRNLEWL 148 (690)
Q Consensus 82 ~~L~~L~l~~~-----------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L 148 (690)
++|++|++++| .+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|++|
T Consensus 97 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 97 TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 99999999987 457899999999999988888888999999999999999887776654 56889999
Q ss_pred EccCCcCCCcCCCCCcccCCC------------------------CCCCCCEEEccCCcCCCCCChhhhhcc-ccCcEEE
Q 042662 149 SLNDNYLTSSTPKLSFLSSLS------------------------NCKYLEYFGFYNNPLGGILPRAIGNLS-QSMEDFQ 203 (690)
Q Consensus 149 ~L~~n~l~~~~~~~~~l~~l~------------------------~l~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~ 203 (690)
++++|.+.+..+.. +..+. ..++|+.|++++|.+++..|..+..+. ++|++|+
T Consensus 177 ~L~~n~l~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 177 ELSSNQIKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp ECTTCCCCCBCTTG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred ECCCCcccccChhh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 99999887765311 11111 126788899999999888888887765 2499999
Q ss_pred eecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcc-----cCCc----cccCCCCCCEE
Q 042662 204 MHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEG-----SIPD----NLCGLAALFQL 274 (690)
Q Consensus 204 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L 274 (690)
+++|++++..|..++.+++|+.|++++|.+++..|..|..+++|+.|++++|...+ .+|. .|..+++|++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 99999998888888999999999999999998888888888889998888775543 2332 67778888888
Q ss_pred EeeCCcCcccCcccccCCCCCCeeeCCCCccCc--cccc-ccc--cCCCceeeccCCcccCCCCCCccCCcccceeeccc
Q 042662 275 DLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS--IPST-LWN--LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSM 349 (690)
Q Consensus 275 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~p~~-~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 349 (690)
++++|.+.+..+..+..+++|+.|++++|.+.. ++.. +.. .++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 888888888888888888888888888776433 3321 221 24566777777776666666666666777777777
Q ss_pred cccccccC-ccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCc--ccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 350 NNFSGVIP-TKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLS--GTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 350 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
|.+++.+| ..+.++++|++|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 76665544 45666666666666666666555555555555555555555554 3445555555555555555555554
Q ss_pred cC
Q 042662 427 EI 428 (690)
Q Consensus 427 ~~ 428 (690)
..
T Consensus 495 i~ 496 (680)
T 1ziw_A 495 IN 496 (680)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-45 Score=427.93 Aligned_cols=422 Identities=22% Similarity=0.185 Sum_probs=327.7
Q ss_pred CcccCCCCCCCEEEccCCcCCccC-CccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCcc--cc
Q 042662 3 PVELGNLAELQKLWLDNNSLTGTI-PSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTA--IF 79 (690)
Q Consensus 3 p~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~ 79 (690)
|.+|+++++|++|+|++|...+.+ |.+|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. +.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 567888888888888888655555 777888888888888888888888888888888888888888888766655 88
Q ss_pred CCCCCCEEecCCC------------CCCCCCEEeccCCccCccCCccccCC--CCCCeEecccCcccccCCccccCCCC-
Q 042662 80 NVSTLKSLYLHNV------------RLPNLEELLLWGNNFSGTIPSFIFNA--SKLFTLGLEENSFSGFIPNTFGSLRN- 144 (690)
Q Consensus 80 ~l~~L~~L~l~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~- 144 (690)
++++|++|++++| .+++|++|++++|.+++..|..+..+ ++|+.|++++|.+++..|..++.+.+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~ 200 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP 200 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence 8888888888887 35678888888888888788777766 78888888888888777776666555
Q ss_pred -----CCEEEccCCcCCCcCCCC-C------------------------------cccCCCC--CCCCCEEEccCCcCCC
Q 042662 145 -----LEWLSLNDNYLTSSTPKL-S------------------------------FLSSLSN--CKYLEYFGFYNNPLGG 186 (690)
Q Consensus 145 -----L~~L~L~~n~l~~~~~~~-~------------------------------~l~~l~~--l~~L~~L~l~~n~l~~ 186 (690)
|++|++++|.+.+..+.. . ....+.. .++|+.|++++|.+.+
T Consensus 201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~ 280 (844)
T 3j0a_A 201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS 280 (844)
T ss_dssp TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence 788888887665432100 0 0001111 2567777777777776
Q ss_pred CCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCcccc
Q 042662 187 ILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLC 266 (690)
Q Consensus 187 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 266 (690)
..|..+..+. +|+.|++++|++++..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+..|.
T Consensus 281 ~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 281 LNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp ECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred cChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 6666666665 777777777777777777777777777777777777766677777777777777777777766666677
Q ss_pred CCCCCCEEEeeCCcCcccC------------------c----------------------ccccCCCCCCeeeCCCCccC
Q 042662 267 GLAALFQLDLGGNKLCGFI------------------P----------------------ACSGNLTNLRKLYLGSNQLT 306 (690)
Q Consensus 267 ~l~~L~~L~L~~n~l~~~~------------------~----------------------~~~~~l~~L~~L~L~~n~l~ 306 (690)
.+++|+.|+|++|.+++.. | ..+..+++|+.|++++|+++
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 7777777777777665321 1 11346889999999999999
Q ss_pred cccc--cccccCCCceeeccCCccc-----CCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcccccc
Q 042662 307 SIPS--TLWNLKDILHLNLSSNSFT-----GPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 307 ~~p~--~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
+++. .+..+++|+.|++++|.++ +..+..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 8553 3566899999999999997 44556788999999999999999999999999999999999999999987
Q ss_pred CCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCC
Q 042662 380 IPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPR 430 (690)
Q Consensus 380 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 430 (690)
.+..+. ++|+.||+++|++++..|..+ .+|+.+++++|++.|.++.
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred Chhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 777666 899999999999999988765 4789999999999998764
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-45 Score=408.69 Aligned_cols=418 Identities=21% Similarity=0.254 Sum_probs=371.0
Q ss_pred CcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCC
Q 042662 3 PVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVS 82 (690)
Q Consensus 3 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 82 (690)
|.+|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+++..|..|+++++|++|++++|++++..+..+++++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccc
Confidence 45799999999999999999988888999999999999999999988889999999999999999999977666799999
Q ss_pred CCCEEecCCCC------------CCCCCEEeccCCccCccCCccccCCCCC----CeEecccCcccccCCccccCCCCCC
Q 042662 83 TLKSLYLHNVR------------LPNLEELLLWGNNFSGTIPSFIFNASKL----FTLGLEENSFSGFIPNTFGSLRNLE 146 (690)
Q Consensus 83 ~L~~L~l~~~~------------l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~ 146 (690)
+|++|++++|. +++|++|++++|.+++..|..+..+++| +.+++++|.+++..|..|..+ +|+
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~ 203 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLH 203 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cce
Confidence 99999999983 5689999999999998888888888888 899999999999888888766 799
Q ss_pred EEEccCCcCCCc-------------------------------------------------------CCCCCcccCCCCC
Q 042662 147 WLSLNDNYLTSS-------------------------------------------------------TPKLSFLSSLSNC 171 (690)
Q Consensus 147 ~L~L~~n~l~~~-------------------------------------------------------~~~~~~l~~l~~l 171 (690)
.|++++|..... ....+ ..+..+
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~--~~~~~l 281 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII--DLFNCL 281 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST--TTTGGG
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch--hhhcCc
Confidence 999988732110 00011 446778
Q ss_pred CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEe
Q 042662 172 KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLS 251 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 251 (690)
++|+.|++++|.+. .+|..+... +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|+
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~ 353 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLD 353 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEE
T ss_pred CcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEe
Confidence 99999999999988 577777766 8999999999998 5665 5789999999999999876665 7899999999
Q ss_pred CcCCcCcccC--CccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccc--ccccccCCCceeeccCCc
Q 042662 252 LEDNQLEGSI--PDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP--STLWNLKDILHLNLSSNS 327 (690)
Q Consensus 252 L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~~~~L~~L~L~~n~ 327 (690)
+++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.+.+.+ ..+..+++|+.|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 9999998654 67889999999999999999877665 889999999999999999854 368889999999999999
Q ss_pred ccCCCCCCccCCcccceeeccccccc-cccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCCh
Q 042662 328 FTGPLPLKIGNFNVLIQLDLSMNNFS-GVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPI 406 (690)
Q Consensus 328 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 406 (690)
+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..|.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 99999999999999999999999998 57899999999999999999999999899999999999999999999998888
Q ss_pred hhhcCCCCCEEEcCCCcCcccCCCCC
Q 042662 407 SLEKLLDLKEINVSFNNLEGEIPREG 432 (690)
Q Consensus 407 ~l~~l~~L~~l~ls~n~l~~~~p~~~ 432 (690)
.+..+++|+.+++++|+++|.+|...
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred HhhcccCCcEEEecCCcccCCCcchH
Confidence 89999999999999999999988653
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-45 Score=422.56 Aligned_cols=426 Identities=16% Similarity=0.202 Sum_probs=321.8
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEEC-cCCcccccCCccc----------------------------------
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDL-SDNSLTGEIPYEI---------------------------------- 54 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~p~~~---------------------------------- 54 (690)
.+++.|+|++|.+.|.+|++|++|++|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8998877643221
Q ss_pred -----------------CCCCCCCeeeccc--CcCcccCCccccCCCCCCEEecCCCCCCC----CCEEeccCCccCccC
Q 042662 55 -----------------GNLHNLEWMAFSF--NKLVGVVPTAIFNVSTLKSLYLHNVRLPN----LEELLLWGNNFSGTI 111 (690)
Q Consensus 55 -----------------~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~l~~~~l~~----L~~L~L~~n~l~~~~ 111 (690)
.....++.+.+.. |++++ +|..++++++|+.|++++|.+.. ...+..+.|.+.+.+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1122334444443 77887 88888888775555555554322 001111222333358
Q ss_pred Ccccc--CCCCCCeEecccCcccccCCccccCCCCCCEEEccCCc-CCC-cCC-CCCccc-CCCCCCCCCEEEccCCcCC
Q 042662 112 PSFIF--NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY-LTS-STP-KLSFLS-SLSNCKYLEYFGFYNNPLG 185 (690)
Q Consensus 112 p~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~-~~~~l~-~l~~l~~L~~L~l~~n~l~ 185 (690)
|..++ ++++|++|+|++|.+.+.+|..|+++++|++|+|++|. +++ ..+ .+..+. .+..+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 88888999998888888888888888889999998887 765 221 111111 4456678888999888888
Q ss_pred CCCCh--hhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCC-CCEEeCcCCcCcccCC
Q 042662 186 GILPR--AIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKK-LQLLSLEDNQLEGSIP 262 (690)
Q Consensus 186 ~~~p~--~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~ 262 (690)
.+|. .+..+. +|+.|++++|+++ .+| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|
T Consensus 562 -~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 562 -EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp -BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred -ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 7887 788877 8888999888888 777 7888888888999888888 77878888888 889999888888 677
Q ss_pred ccccCCCC--CCEEEeeCCcCcccCcccc---c--CCCCCCeeeCCCCccCccccccc-ccCCCceeeccCCcccCCCCC
Q 042662 263 DNLCGLAA--LFQLDLGGNKLCGFIPACS---G--NLTNLRKLYLGSNQLTSIPSTLW-NLKDILHLNLSSNSFTGPLPL 334 (690)
Q Consensus 263 ~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~p~~~~-~~~~L~~L~L~~n~l~~~~~~ 334 (690)
..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++.+|..+. .+++|+.|+|++|+++ .+|.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 77776654 8888898888887665422 2 34578888888888888887654 6788888899888888 5555
Q ss_pred CccC--------CcccceeeccccccccccCcccc--CCCCCCeeeccCccccccCCcccCCCCCCCEEECcC------C
Q 042662 335 KIGN--------FNVLIQLDLSMNNFSGVIPTKIG--GLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSN------N 398 (690)
Q Consensus 335 ~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~------n 398 (690)
.+.. +++|+.|+|++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 4433 338888889888888 6777776 88888889999888886 788888888889888866 7
Q ss_pred cCcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCCCCccccccCCCC
Q 042662 399 NLSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKGNEL 447 (690)
Q Consensus 399 ~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~ 447 (690)
.+.+.+|..+..+++|+.|++++|++ +.+|.. .++.+..+.+.+|+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPN 839 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCC
Confidence 78888888888888889999998888 677765 345677777777764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.5e-45 Score=407.25 Aligned_cols=433 Identities=22% Similarity=0.239 Sum_probs=318.6
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++
T Consensus 20 ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 20 IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 566543 789999999999998888889999999999999999998888899999999999999999998777779999
Q ss_pred CCCCEEecCCCC------------CCCCCEEeccCCccCccCC-ccccCCCCCCeEecccCcccccCCccccCCCCCCEE
Q 042662 82 STLKSLYLHNVR------------LPNLEELLLWGNNFSGTIP-SFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWL 148 (690)
Q Consensus 82 ~~L~~L~l~~~~------------l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 148 (690)
++|++|++++|. +++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++++++|++|
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 177 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence 999999999883 4578999999998554554 578889999999999999998888888888888888
Q ss_pred EccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCC--ChhhhhccccCcEEEeecCcccccCcc----cccCCCC
Q 042662 149 SLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGIL--PRAIGNLSQSMEDFQMHNCNISGSIPE----EISNLTN 222 (690)
Q Consensus 149 ~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~L~~n~l~~~~p~----~l~~l~~ 222 (690)
++++|.+..... ..+..+++|+.|++++|.+++.. |..+.....+|+.|++++|.+++..+. .+..+++
T Consensus 178 ~l~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 178 TLHLSESAFLLE-----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEECSBSTTHHH-----HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred ecccCcccccch-----hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 887776543320 11234667777777777766531 112222222555555555555443221 2233344
Q ss_pred CCEEECCCCcCccc-----------------------------------chhhhcCCCCCCEEeCcCCcCcccCCccc-c
Q 042662 223 LIAIYLGRNKLNGS-----------------------------------IPIALGKLKKLQLLSLEDNQLEGSIPDNL-C 266 (690)
Q Consensus 223 L~~L~l~~n~l~~~-----------------------------------~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-~ 266 (690)
|+.+++++|.+.+. ++..+....+|+.|++++|.+. .+|..+ .
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh
Confidence 44444444433321 1111233467888888888876 566655 5
Q ss_pred CCCCCCEEEeeCCcCcccCc---ccccCCCCCCeeeCCCCccCccc---ccccccCCCceeeccCCcccCCCCCCccCCc
Q 042662 267 GLAALFQLDLGGNKLCGFIP---ACSGNLTNLRKLYLGSNQLTSIP---STLWNLKDILHLNLSSNSFTGPLPLKIGNFN 340 (690)
Q Consensus 267 ~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~p---~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 340 (690)
.+++|+.|++++|.+++.+| ..++.+++|+.|++++|++++++ ..+..+++|++|++++|+++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 68889999999998887653 34677888999999999888865 34778888999999999888 6777888888
Q ss_pred ccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcC
Q 042662 341 VLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVS 420 (690)
Q Consensus 341 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls 420 (690)
+|++|++++|.+++ +|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|+++
T Consensus 411 ~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 89999999998874 33332 257888999999888643 46788899999999888 5665 4568888999999
Q ss_pred CCcCcccCCC-CCCCCCCccccccCCCCCCCCC
Q 042662 421 FNNLEGEIPR-EGPFRNFSAESFKGNELLCGMP 452 (690)
Q Consensus 421 ~n~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 452 (690)
+|++++.+|. ...+..+..+.+.+|++.|.++
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9988887665 2456677778888888888764
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-45 Score=413.59 Aligned_cols=356 Identities=20% Similarity=0.260 Sum_probs=319.3
Q ss_pred CCcccccCCcccCCCCCCCeeecccCcCccc-----------------CCcccc--CCCCCCEEecCCCCCCCCCEEecc
Q 042662 43 DNSLTGEIPYEIGNLHNLEWMAFSFNKLVGV-----------------VPTAIF--NVSTLKSLYLHNVRLPNLEELLLW 103 (690)
Q Consensus 43 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~l~~~~l~~L~~L~L~ 103 (690)
+|+++| +|..|+++++|++|+|++|++++. +|..++ ++++ |++|+++
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-------------L~~L~L~ 257 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-------------LTDVEVY 257 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-------------CCEEEEE
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC-------------CCEEEec
Confidence 678998 899999999999999999999986 898887 7765 7777788
Q ss_pred CCccCccCCccccCCCCCCeEecccCc-ccc-cCCccccCC------CCCCEEEccCCcCCCcCCCCCccc--CCCCCCC
Q 042662 104 GNNFSGTIPSFIFNASKLFTLGLEENS-FSG-FIPNTFGSL------RNLEWLSLNDNYLTSSTPKLSFLS--SLSNCKY 173 (690)
Q Consensus 104 ~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~l~--~l~~l~~ 173 (690)
+|.+.+.+|..++++++|++|++++|+ +++ .+|..++++ ++|++|++++|.+... | . .++++++
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i----p--~~~~l~~l~~ 331 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF----P--VETSLQKMKK 331 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC----C--CHHHHTTCTT
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc----C--chhhhccCCC
Confidence 888888999999999999999999998 998 889888876 9999999999999843 2 4 6889999
Q ss_pred CCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCC-CCEEECCCCcCcccchhhhcCCC--CCCEE
Q 042662 174 LEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTN-LIAIYLGRNKLNGSIPIALGKLK--KLQLL 250 (690)
Q Consensus 174 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~~p~~l~~l~--~L~~L 250 (690)
|+.|++++|.++|.+| .+..+. +|++|++++|+++ .+|..++.+++ |+.|++++|.++ .+|..+..+. +|+.|
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 9999999999999999 888887 9999999999999 88888999999 999999999999 7888887655 89999
Q ss_pred eCcCCcCcccCCcccc-------CCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccccccccc--------
Q 042662 251 SLEDNQLEGSIPDNLC-------GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNL-------- 315 (690)
Q Consensus 251 ~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~-------- 315 (690)
++++|.+.+..|..+. .+++|+.|++++|.++...+..+..+++|+.|++++|+++.+|......
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 9999999999998888 7889999999999999665556677999999999999999988765442
Q ss_pred CCCceeeccCCcccCCCCCCcc--CCcccceeeccccccccccCccccCCCCCCeeec------cCccccccCCcccCCC
Q 042662 316 KDILHLNLSSNSFTGPLPLKIG--NFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFL------EYNRLQGSIPNSIGDL 387 (690)
Q Consensus 316 ~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~~l~~l 387 (690)
++|+.|++++|+++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|+| ++|++.+.+|..+..+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 28999999999999 7888887 99999999999999998 8999999999999999 5678889999999999
Q ss_pred CCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 388 ISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 388 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
++|++|++++|.+ +.+|..+. ++|+.|++++|++...
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 9999999999999 57887765 7999999999988753
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-44 Score=415.89 Aligned_cols=396 Identities=20% Similarity=0.243 Sum_probs=323.9
Q ss_pred CCcccCCCCCCCEEEc-cCCcCCccCCccc--------------------------------------------------
Q 042662 2 IPVELGNLAELQKLWL-DNNSLTGTIPSSI-------------------------------------------------- 30 (690)
Q Consensus 2 lp~~~~~l~~L~~L~L-s~n~l~~~~~~~~-------------------------------------------------- 30 (690)
||++|++|++|++|+| ++|.+.|..|-..
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 6899999999999999 8888776533110
Q ss_pred -cCCCCCCEEECc--CCcccccCCcccCCCCCCCeeecccCcCcc-----------------cCCcccc--CCCCCCEEe
Q 042662 31 -FNLSSLSSLDLS--DNSLTGEIPYEIGNLHNLEWMAFSFNKLVG-----------------VVPTAIF--NVSTLKSLY 88 (690)
Q Consensus 31 -~~l~~L~~L~Ls--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~ 88 (690)
.....++.+.+. +|.+++ +|..|+++++|++|+|++|++++ .+|..++ ++++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~----- 492 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD----- 492 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-----
T ss_pred cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC-----
Confidence 112233344444 378887 89999999999999999999998 3888776 7665
Q ss_pred cCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCc-ccc-cCCccccCCC-------CCCEEEccCCcCCCcC
Q 042662 89 LHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENS-FSG-FIPNTFGSLR-------NLEWLSLNDNYLTSST 159 (690)
Q Consensus 89 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~ 159 (690)
|+.|+|++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+++++ +|++|++++|.+...
T Consensus 493 --------L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i- 563 (876)
T 4ecn_A 493 --------LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF- 563 (876)
T ss_dssp --------CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-
T ss_pred --------CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-
Confidence 6777777788888899999999999999999998 888 7787665554 999999999988843
Q ss_pred CCCCccc--CCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCC-CCEEECCCCcCccc
Q 042662 160 PKLSFLS--SLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTN-LIAIYLGRNKLNGS 236 (690)
Q Consensus 160 ~~~~~l~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~l~~n~l~~~ 236 (690)
| . .++++++|+.|++++|.++ .+| .+..+. +|+.|++++|+++ .+|..+..+++ |+.|++++|.++ .
T Consensus 564 ---p--~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 564 ---P--ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp ---C--CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred ---C--ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 2 4 6888999999999999998 778 777776 8999999999998 88888889998 999999999998 6
Q ss_pred chhhhcCCCC--CCEEeCcCCcCcccCCccc---c--CCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccc
Q 042662 237 IPIALGKLKK--LQLLSLEDNQLEGSIPDNL---C--GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP 309 (690)
Q Consensus 237 ~p~~l~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p 309 (690)
+|..+..+.. |+.|++++|.+.+.+|... . .+++|+.|+|++|.++...+..+..+++|+.|+|++|+++.+|
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip 713 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIP 713 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCC
T ss_pred CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccC
Confidence 7877776654 9999999999988766422 2 3458999999999998554445567899999999999999888
Q ss_pred cccccc--------CCCceeeccCCcccCCCCCCcc--CCcccceeeccccccccccCccccCCCCCCeeeccC------
Q 042662 310 STLWNL--------KDILHLNLSSNSFTGPLPLKIG--NFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEY------ 373 (690)
Q Consensus 310 ~~~~~~--------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~------ 373 (690)
..++.. ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 765543 38999999999998 7787876 89999999999999997 788888999999999976
Q ss_pred ccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 374 NRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 374 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
|++.+.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.|++++|++...
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 778889999999999999999999999 68887765 6899999999988654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=393.87 Aligned_cols=423 Identities=20% Similarity=0.221 Sum_probs=278.6
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCC
Q 042662 13 QKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNV 92 (690)
Q Consensus 13 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~ 92 (690)
++|++++|.++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 56778888877 4666555 77888888888877666677777888888888888877777777778888888888777
Q ss_pred --------CCCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccCCccccCCCCC--CEEEccCCcC--CCcC
Q 042662 93 --------RLPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNL--EWLSLNDNYL--TSST 159 (690)
Q Consensus 93 --------~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~ 159 (690)
.+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..
T Consensus 80 ~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc
Confidence 34678888888888886 477888888999999999988876 356677777 8888888887 3332
Q ss_pred C-CCCcc--------------------cCCCCCCCCCEEEccCCc-------CCCCCChhhhhccccCcEEEeecCcccc
Q 042662 160 P-KLSFL--------------------SSLSNCKYLEYFGFYNNP-------LGGILPRAIGNLSQSMEDFQMHNCNISG 211 (690)
Q Consensus 160 ~-~~~~l--------------------~~l~~l~~L~~L~l~~n~-------l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 211 (690)
+ .++.+ ..+.++++|+.+++++|. +.+.+| .+..+. +|+.|++++|.+++
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLNNIETTW 234 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEEEEEEEH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc-chhhccccccccCH
Confidence 1 11100 122345555555555554 333333 344443 55555555555544
Q ss_pred cCccccc---CCCCCCEEECCCCcCcccchhhh-----cCCCCCCEEeCcCCcCcccCC-ccccCC---CCCCEEEeeCC
Q 042662 212 SIPEEIS---NLTNLIAIYLGRNKLNGSIPIAL-----GKLKKLQLLSLEDNQLEGSIP-DNLCGL---AALFQLDLGGN 279 (690)
Q Consensus 212 ~~p~~l~---~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~L~~n 279 (690)
..+..+. ..++|+.|++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 3221111 13456666666666665555555 5556666666666655 233 223222 45666666666
Q ss_pred cCcccCcccccCCCCCCeeeCCCCccCc-ccccccccCCCceeeccCCcccC--CCCCCccCCcccceeecccccccccc
Q 042662 280 KLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSNSFTG--PLPLKIGNFNVLIQLDLSMNNFSGVI 356 (690)
Q Consensus 280 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~ 356 (690)
.+.... .+..+++|+.|++++|++++ +|..+..+++|+.|++++|++++ .+|..+..+++|++|++++|.+++.+
T Consensus 313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred cccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 654322 12566778888888887777 66777777778888888887775 45566777778888888888877645
Q ss_pred Cc-cccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCC--CCC
Q 042662 357 PT-KIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPR--EGP 433 (690)
Q Consensus 357 ~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~--~~~ 433 (690)
|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++. +|. ...
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 466 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDR 466 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence 54 366777788888888877776666554 67788888888777 666666677788888888887774 443 233
Q ss_pred CCCCccccccCCCCCCCC
Q 042662 434 FRNFSAESFKGNELLCGM 451 (690)
Q Consensus 434 ~~~~~~~~~~~n~~lc~~ 451 (690)
+..+..+.+.+|+..|.+
T Consensus 467 l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CTTCCEEECCSSCBCCCH
T ss_pred CCcccEEECcCCCCcccC
Confidence 455666667777766653
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=393.95 Aligned_cols=405 Identities=21% Similarity=0.236 Sum_probs=313.5
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|.+++..|..|+++++|++|++++|+++ .+|.. .+
T Consensus 15 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 89 (520)
T 2z7x_B 15 VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PT 89 (520)
T ss_dssp CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CC
T ss_pred cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--cc
Confidence 454444 66777777777776655566777777777777777776666666777777777777777766 34444 66
Q ss_pred CCCCEEecCCC------------CCCCCCEEeccCCccCccCCccccCCCCC--CeEecccCcc--cccCCcccc-----
Q 042662 82 STLKSLYLHNV------------RLPNLEELLLWGNNFSGTIPSFIFNASKL--FTLGLEENSF--SGFIPNTFG----- 140 (690)
Q Consensus 82 ~~L~~L~l~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~----- 140 (690)
++|++|++++| .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccc
Confidence 67777777666 23456667777766664 234555555 6677766666 444554444
Q ss_pred ---------------------CCCCCCEEEccCCc-------CCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhh
Q 042662 141 ---------------------SLRNLEWLSLNDNY-------LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAI 192 (690)
Q Consensus 141 ---------------------~l~~L~~L~L~~n~-------l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~ 192 (690)
++++|+.|++++|. +.+.. +.+..+++|+.|++++|.+++..+..+
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~------~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL------AKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH------HGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecch------hhhccccchhhccccccccCHHHHHHH
Confidence 46677777777765 32221 457888999999999998876544333
Q ss_pred hh---ccccCcEEEeecCcccccCcccc-----cCCCCCCEEECCCCcCcccch-hhhcCC---CCCCEEeCcCCcCccc
Q 042662 193 GN---LSQSMEDFQMHNCNISGSIPEEI-----SNLTNLIAIYLGRNKLNGSIP-IALGKL---KKLQLLSLEDNQLEGS 260 (690)
Q Consensus 193 ~~---~~~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~p-~~l~~l---~~L~~L~L~~n~l~~~ 260 (690)
.. .. +|++|++++|+++|.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+...
T Consensus 241 ~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 241 LQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHTS-SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHhhhC-cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 22 23 89999999999999999988 8999999999999999 344 455444 6899999999998753
Q ss_pred CCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCc---ccccccccCCCceeeccCCcccCCCCC-Cc
Q 042662 261 IPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS---IPSTLWNLKDILHLNLSSNSFTGPLPL-KI 336 (690)
Q Consensus 261 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~p~~~~~~~~L~~L~L~~n~l~~~~~~-~~ 336 (690)
. .+..+++|++|++++|.+++..|..++.+++|+.|++++|++++ +|..+..+++|+.|++++|.+++.+|. .+
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 2 12688999999999999999899999999999999999999997 446788999999999999999985665 47
Q ss_pred cCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCCh-hhhcCCCCC
Q 042662 337 GNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPI-SLEKLLDLK 415 (690)
Q Consensus 337 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~ 415 (690)
..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++. +|. .+..+++|+
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCccc
Confidence 8899999999999999988877664 79999999999998 888888899999999999999995 555 488999999
Q ss_pred EEEcCCCcCcccCC
Q 042662 416 EINVSFNNLEGEIP 429 (690)
Q Consensus 416 ~l~ls~n~l~~~~p 429 (690)
.+++++|+++|.++
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 99999999998765
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-42 Score=383.79 Aligned_cols=420 Identities=20% Similarity=0.226 Sum_probs=342.5
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEe
Q 042662 9 LAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLY 88 (690)
Q Consensus 9 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 88 (690)
|+...+.+.+++.++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+
T Consensus 4 C~~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 4 CDASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp ECTTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 456667889999999 6777664 7999999999999988899999999999999999999999899999999999999
Q ss_pred cCCC-----------CCCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccC-CccccCCCCCCEEEccCCcC
Q 042662 89 LHNV-----------RLPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFI-PNTFGSLRNLEWLSLNDNYL 155 (690)
Q Consensus 89 l~~~-----------~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l 155 (690)
+++| .+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9998 46789999999999986 46778899999999999999844444 46899999999999999999
Q ss_pred CCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccC--c-ccccCCCCCCEEECCCCc
Q 042662 156 TSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSI--P-EEISNLTNLIAIYLGRNK 232 (690)
Q Consensus 156 ~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~l~~n~ 232 (690)
.+..+ ..++.+++|+.|+++.|.+. .+|..+....++|++|++++|++++.. | .....+++|+.|++++|.
T Consensus 161 ~~~~~-----~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 161 RNYQS-----QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp CEECT-----TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cccCh-----hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 87642 67888999999999999875 345554433348999999999998742 2 223467899999999999
Q ss_pred Ccccchhh----hcCCCCCCEEeCcCCcCcccC-----------------------------------CccccCCCCCCE
Q 042662 233 LNGSIPIA----LGKLKKLQLLSLEDNQLEGSI-----------------------------------PDNLCGLAALFQ 273 (690)
Q Consensus 233 l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~-----------------------------------~~~~~~l~~L~~ 273 (690)
+++..+.. +..+++|+.+++++|.+.+.. +..+...++|+.
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence 88765543 456788888888888765421 001122357888
Q ss_pred EEeeCCcCcccCcccc-cCCCCCCeeeCCCCccCc-cc---ccccccCCCceeeccCCcccCCCC--CCccCCcccceee
Q 042662 274 LDLGGNKLCGFIPACS-GNLTNLRKLYLGSNQLTS-IP---STLWNLKDILHLNLSSNSFTGPLP--LKIGNFNVLIQLD 346 (690)
Q Consensus 274 L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~-~p---~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~ 346 (690)
|++++|.+. .+|..+ ..+++|+.|++++|++++ +| ..+..+++|+.|++++|++++..+ ..+..+++|++|+
T Consensus 315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 999999887 445444 679999999999999998 43 347788999999999999986432 4578899999999
Q ss_pred ccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 347 LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 347 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
+++|.++ .+|..+..+++|++|++++|+++ .+|..+ .++|++||+++|++++.+ ..+++|+.|++++|+++
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 9999998 67888999999999999999997 445443 268999999999999753 47889999999999998
Q ss_pred cCCCCCCCCCCccccccCCCC
Q 042662 427 EIPREGPFRNFSAESFKGNEL 447 (690)
Q Consensus 427 ~~p~~~~~~~~~~~~~~~n~~ 447 (690)
.+|....++.+..+.+.+|..
T Consensus 465 ~ip~~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 465 TLPDASLFPVLLVMKISRNQL 485 (549)
T ss_dssp SCCCGGGCTTCCEEECCSSCC
T ss_pred cCCCcccCccCCEEecCCCcc
Confidence 677666677788888888754
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.8e-39 Score=369.12 Aligned_cols=433 Identities=21% Similarity=0.244 Sum_probs=324.1
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEec
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYL 89 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 89 (690)
+++++|+|++|.+++..+.+|.++++|++|+|++|.|++..|.+|+++++|++|+|++|++++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999999888889999999999999999999888889999999999999999999877788999999999999
Q ss_pred CCC-----------CCCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccCCccccCCCCC----CEEEccCC
Q 042662 90 HNV-----------RLPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNL----EWLSLNDN 153 (690)
Q Consensus 90 ~~~-----------~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n 153 (690)
++| .+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..|..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 988 45689999999999875 467788889999999999999998888777655443 35677777
Q ss_pred cCCCcCCCCCc-c------------------cCCCCCCCCCEEE------------------------------------
Q 042662 154 YLTSSTPKLSF-L------------------SSLSNCKYLEYFG------------------------------------ 178 (690)
Q Consensus 154 ~l~~~~~~~~~-l------------------~~l~~l~~L~~L~------------------------------------ 178 (690)
.+....+.... . ..+..+..++...
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 66543311000 0 0011112222211
Q ss_pred ---------------------ccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccc
Q 042662 179 ---------------------FYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSI 237 (690)
Q Consensus 179 ---------------------l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 237 (690)
+.++.+... ..+.... .++.|++.+|.+.+..+ ..+..|+.+++..|.+...
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~-~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~- 364 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA- 364 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCC-CCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB-
T ss_pred cccccchhhhhhhhcccccccccccccccc--cccccch-hhhhhhcccccccCcCc---ccchhhhhcccccccCCCC-
Confidence 111111110 0111111 34444444444432221 1234444455554444322
Q ss_pred hhhhcCCCCCCEEeCcCCcCcc--cCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc-c-cccc
Q 042662 238 PIALGKLKKLQLLSLEDNQLEG--SIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI-P-STLW 313 (690)
Q Consensus 238 p~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-p-~~~~ 313 (690)
.....+++|+.|++++|.+.. ..+..+..+.+|+.+++..|..... +..+..+++|+.++++.|+.... + ..+.
T Consensus 365 -~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 365 -FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp -CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred -cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccc
Confidence 223457788888888887753 3455566777888888888876644 44577789999999998877763 2 4567
Q ss_pred ccCCCceeeccCCcccCCCCCCccCCcccceeecccccc-ccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCE
Q 042662 314 NLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNF-SGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKS 392 (690)
Q Consensus 314 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 392 (690)
.+.+++.++++.|.+.+..+..+..++.|+.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 889999999999999998999999999999999999975 4467888999999999999999999999999999999999
Q ss_pred EECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC-CCC-CCCccccccCCCCCCCC
Q 042662 393 LNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE-GPF-RNFSAESFKGNELLCGM 451 (690)
Q Consensus 393 L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~-~~~-~~~~~~~~~~n~~lc~~ 451 (690)
|+|++|++++..|..+..+++|+.|++++|++++..|.. ..+ ..+..+.+.+||+.|.|
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 999999999998999999999999999999999988764 222 56778889999999976
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.8e-40 Score=357.69 Aligned_cols=385 Identities=20% Similarity=0.190 Sum_probs=295.5
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccC-CccccCCCCCCEEecC
Q 042662 12 LQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVV-PTAIFNVSTLKSLYLH 90 (690)
Q Consensus 12 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~ 90 (690)
-+.++.+++.++ .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~------- 80 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS------- 80 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT-------
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccccc-------
Confidence 356778888877 5665 3 378999999999998888888999999999999999887555 456776654
Q ss_pred CCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCcc--ccCCCCCCEEEccCCcCCCcCCCCCcccCC
Q 042662 91 NVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNT--FGSLRNLEWLSLNDNYLTSSTPKLSFLSSL 168 (690)
Q Consensus 91 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 168 (690)
|++|++++|.+++..|..+.++++|++|++++|.+++..+.. |.++++|++|++++|.+.+..+. ..+
T Consensus 81 ------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~ 150 (455)
T 3v47_A 81 ------LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA----SFF 150 (455)
T ss_dssp ------CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC----GGG
T ss_pred ------CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc----ccc
Confidence 566666666677677888888999999999999988755544 88899999999999988776421 226
Q ss_pred CCCCCCCEEEccCCcCCCCCChhhhhcc-ccCcEEEeecCcccccCccc--------ccCCCCCCEEECCCCcCcccchh
Q 042662 169 SNCKYLEYFGFYNNPLGGILPRAIGNLS-QSMEDFQMHNCNISGSIPEE--------ISNLTNLIAIYLGRNKLNGSIPI 239 (690)
Q Consensus 169 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~-~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~l~~n~l~~~~p~ 239 (690)
.++++|++|++++|.+++..|..+..+. .+|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|.
T Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 230 (455)
T 3v47_A 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230 (455)
T ss_dssp GGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH
T ss_pred CCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh
Confidence 7888899999999988888887777652 27888999999887654433 23567888899999988888877
Q ss_pred hhcCC---CCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCccccc--CCCCCCeeeCCCCccCc-cccccc
Q 042662 240 ALGKL---KKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSG--NLTNLRKLYLGSNQLTS-IPSTLW 313 (690)
Q Consensus 240 ~l~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~-~p~~~~ 313 (690)
.+... ++|+.|++++|...+.... .+.+....+..+. ..++|+.|++++|.+++ .|..+.
T Consensus 231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 231 RFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp HHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred hhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 76544 7888888888866543111 1111111122222 23578888888888877 456677
Q ss_pred ccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEE
Q 042662 314 NLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSL 393 (690)
Q Consensus 314 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 393 (690)
.+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|+|++|++++..|..+..+++|++|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 78888888888888887777788888888888888888888778888888999999999999988888888899999999
Q ss_pred ECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC
Q 042662 394 NLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE 431 (690)
Q Consensus 394 ~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 431 (690)
++++|++++..+..+..+++|+.|++++|+++|.+|..
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 99999998777777788899999999999999888753
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-39 Score=362.96 Aligned_cols=408 Identities=21% Similarity=0.214 Sum_probs=245.2
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 042662 8 NLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSL 87 (690)
Q Consensus 8 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 87 (690)
.+...+++++++|.+++ +|..+. ++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34456899999999994 776664 899999999999998888899999999999999999999889999999999999
Q ss_pred ecCCCC--------CCCCCEEeccCCccCc-cCCccccCCCCCCeEecccCcccccCCccccCCCCC--CEEEccCCcC-
Q 042662 88 YLHNVR--------LPNLEELLLWGNNFSG-TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNL--EWLSLNDNYL- 155 (690)
Q Consensus 88 ~l~~~~--------l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l- 155 (690)
++++|. +++|++|++++|.+++ .+|..+.++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 106 ~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 106 DVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp ECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred ECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 999983 5689999999999986 3568899999999999999998763 45555555 9999999988
Q ss_pred -CCcCCC-CCccc--------------------CCCCCCCCCEEEccCCcCCC----CCChhhhhcc-------------
Q 042662 156 -TSSTPK-LSFLS--------------------SLSNCKYLEYFGFYNNPLGG----ILPRAIGNLS------------- 196 (690)
Q Consensus 156 -~~~~~~-~~~l~--------------------~l~~l~~L~~L~l~~n~l~~----~~p~~~~~~~------------- 196 (690)
.+..+. ++.+. .+..+++|+.+++++|.... .....+....
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 544321 10000 11234445555555442100 0001111111
Q ss_pred -------------ccCcEEEeecCcccccCcccc-----cCCCCCCEEECCCCcCcccch-hhhcC---CCCCCEEeCcC
Q 042662 197 -------------QSMEDFQMHNCNISGSIPEEI-----SNLTNLIAIYLGRNKLNGSIP-IALGK---LKKLQLLSLED 254 (690)
Q Consensus 197 -------------~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~p-~~l~~---l~~L~~L~L~~ 254 (690)
.+|++|++++|.++|.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|+.|++++
T Consensus 263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 034444444444444444433 3333333333333333 111 11111 13455555555
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccc---ccccccCCCceeeccCCcccCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP---STLWNLKDILHLNLSSNSFTGP 331 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p---~~~~~~~~L~~L~L~~n~l~~~ 331 (690)
|.+.... ....+++|++|++++|.+++..|..++.+++|+.|++++|++++++ ..+..+++|+.|++++|.+++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 5543211 1144555666666666666555555556666666666666665533 3455556666666666666553
Q ss_pred CCC-CccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChh-hh
Q 042662 332 LPL-KIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPIS-LE 409 (690)
Q Consensus 332 ~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~ 409 (690)
+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++ +|.. +.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHh
Confidence 333 345556666666666666555444332 45666666666655 445444456666666666666653 3333 55
Q ss_pred cCCCCCEEEcCCCcCcccCC
Q 042662 410 KLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 410 ~l~~L~~l~ls~n~l~~~~p 429 (690)
.+++|+.+++++|++.|.+|
T Consensus 495 ~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCTTCCCEECCSCCBCCCHH
T ss_pred cCCCCCEEEecCCCcCCCcc
Confidence 55666666666666555443
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-39 Score=354.98 Aligned_cols=363 Identities=21% Similarity=0.258 Sum_probs=289.0
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccC-CcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEe
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEI-PYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLY 88 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 88 (690)
++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|+++++|++|++++|++++..|..|+++++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--- 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE--- 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC---
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCC---
Confidence 78999999999999988999999999999999999997555 66799999999999999999998899998887654
Q ss_pred cCCCCCCCCCEEeccCCccCccCCcc--ccCCCCCCeEecccCcccccCCcc-ccCCCCCCEEEccCCcCCCcCCCCCcc
Q 042662 89 LHNVRLPNLEELLLWGNNFSGTIPSF--IFNASKLFTLGLEENSFSGFIPNT-FGSLRNLEWLSLNDNYLTSSTPKLSFL 165 (690)
Q Consensus 89 l~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~l 165 (690)
+|++++|.+++.+|.. +..+++|++|++++|.+++..|.. |.++++|++|++++|.+.+..+
T Consensus 107 ----------~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----- 171 (455)
T 3v47_A 107 ----------VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE----- 171 (455)
T ss_dssp ----------EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT-----
T ss_pred ----------EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh-----
Confidence 5555555555544444 778888899999988888877765 7888889999998888877652
Q ss_pred cCCCCC--CCCCEEEccCCcCCCCCChhhh--------hccccCcEEEeecCcccccCcccccCC---CCCCEEECCCCc
Q 042662 166 SSLSNC--KYLEYFGFYNNPLGGILPRAIG--------NLSQSMEDFQMHNCNISGSIPEEISNL---TNLIAIYLGRNK 232 (690)
Q Consensus 166 ~~l~~l--~~L~~L~l~~n~l~~~~p~~~~--------~~~~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~l~~n~ 232 (690)
..+..+ ..|+.|++++|.+.+..+..+. ... +|++|++++|++++..|..+... ++|+.|++++|.
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccc-eeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 233333 6788888888888765544322 333 79999999999988877776544 889999999987
Q ss_pred CcccchhhhcCCCCCCEEeCcCCcCcccCCcccc--CCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc-c
Q 042662 233 LNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLC--GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI-P 309 (690)
Q Consensus 233 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-p 309 (690)
+.+... ..+.+.+..+..+. ..++|+.|++++|.+.+..|..++.+++|+.|++++|+++++ |
T Consensus 251 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 251 NMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 664321 11122222222222 236788888888888888888888888888888888888884 5
Q ss_pred ccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCC
Q 042662 310 STLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLIS 389 (690)
Q Consensus 310 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 389 (690)
..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 57778888888888888888777888888999999999999999888889999999999999999999777777899999
Q ss_pred CCEEECcCCcCcccCC
Q 042662 390 LKSLNLSNNNLSGTIP 405 (690)
Q Consensus 390 L~~L~Ls~n~l~~~~p 405 (690)
|+.|++++|++++.+|
T Consensus 397 L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCBCCCTT
T ss_pred ccEEEccCCCcccCCC
Confidence 9999999999998877
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2e-38 Score=360.62 Aligned_cols=418 Identities=22% Similarity=0.197 Sum_probs=342.6
Q ss_pred cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCC
Q 042662 4 VELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVST 83 (690)
Q Consensus 4 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 83 (690)
.+|+++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|+++++|++|++++|++++..+..|+++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 57999999999999999999888889999999999999999999777788999999999999999999887788999999
Q ss_pred CCEEecCCC------------CCCCCCEEeccCCccCccCCccccCCCCC----CeEecccCcccccCCccccCCCCCCE
Q 042662 84 LKSLYLHNV------------RLPNLEELLLWGNNFSGTIPSFIFNASKL----FTLGLEENSFSGFIPNTFGSLRNLEW 147 (690)
Q Consensus 84 L~~L~l~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~ 147 (690)
|++|++++| .+++|++|++++|.+++..|..+..+.++ ..++++.|.++...+..+.. ..++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~ 228 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK 228 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhh
Confidence 999999998 35689999999999998888777655443 35777777776544433322 22333
Q ss_pred EEccCCcCCC-------------------------c------C----------------------------CC-------
Q 042662 148 LSLNDNYLTS-------------------------S------T----------------------------PK------- 161 (690)
Q Consensus 148 L~L~~n~l~~-------------------------~------~----------------------------~~------- 161 (690)
+++.+|.... . . ..
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 3333331110 0 0 00
Q ss_pred ---------CCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCc
Q 042662 162 ---------LSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNK 232 (690)
Q Consensus 162 ---------~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 232 (690)
+.....+.....|+.|++.+|.+....+.. +. .|+.+.+..|...... ....+++|+.+++++|.
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---l~-~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK---LK-SLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB---CT-TCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSC
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCccc---ch-hhhhcccccccCCCCc--ccccccccccchhhccc
Confidence 000122445678999999999887654432 23 7899999999876433 34578999999999998
Q ss_pred Ccc--cchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCc-ccccCCCCCCeeeCCCCccCc-c
Q 042662 233 LNG--SIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIP-ACSGNLTNLRKLYLGSNQLTS-I 308 (690)
Q Consensus 233 l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~ 308 (690)
+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++.|......+ ..+..+++++.++++.|.+.. .
T Consensus 383 l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 383 LSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp CBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 863 456677889999999999998874 45568889999999999987765544 567889999999999999998 4
Q ss_pred cccccccCCCceeeccCCccc-CCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCC
Q 042662 309 PSTLWNLKDILHLNLSSNSFT-GPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDL 387 (690)
Q Consensus 309 p~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 387 (690)
+..+..++.++.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 566778899999999999854 4678889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEECcCCcCcccCChhhhcC-CCCCEEEcCCCcCcccCC
Q 042662 388 ISLKSLNLSNNNLSGTIPISLEKL-LDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 388 ~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~l~ls~n~l~~~~p 429 (690)
++|++|||++|++++..|..+..+ ++|+.|++++|++.|.+.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999999999999999999999888 689999999999998765
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-39 Score=345.43 Aligned_cols=370 Identities=25% Similarity=0.329 Sum_probs=246.7
Q ss_pred CCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCC-------------CeeecccCcCccc
Q 042662 7 GNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNL-------------EWMAFSFNKLVGV 73 (690)
Q Consensus 7 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~ 73 (690)
.+.++|++|++++|.+ +.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 3568999999999999 7999999999999999999999999999999998875 899999999885
Q ss_pred CCccccCCCCCCEEecCCCCC-------CCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCC
Q 042662 74 VPTAIFNVSTLKSLYLHNVRL-------PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLE 146 (690)
Q Consensus 74 ~p~~l~~l~~L~~L~l~~~~l-------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 146 (690)
+|.. .++|++|++++|.+ ++|++|++++|.+++ +|.. .++|++|++++|++++ +| .|+++++|+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred CCCC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 4432 36888888888844 468888888888874 3321 2678888888888886 56 588888888
Q ss_pred EEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEE
Q 042662 147 WLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAI 226 (690)
Q Consensus 147 ~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 226 (690)
+|++++|.+.+.. .. ..+|+.|++++|.+++ +| .+..+. +|++|++++|++++ +|.. .++|+.|
T Consensus 157 ~L~l~~N~l~~lp------~~---~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L 220 (454)
T 1jl5_A 157 IIDVDNNSLKKLP------DL---PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESI 220 (454)
T ss_dssp EEECCSSCCSCCC------CC---CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEE
T ss_pred EEECCCCcCcccC------CC---cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEE
Confidence 8888888877643 11 2478888888888886 45 567776 78888888888875 4432 2578888
Q ss_pred ECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccC
Q 042662 227 YLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLT 306 (690)
Q Consensus 227 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 306 (690)
++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|+.|++++|.+.+ +|.. .++|+.|++++|.++
T Consensus 221 ~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 221 VAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp ECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred ECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 88888887 556 37888888888888888875 443 24778888888888876 3432 368888888888888
Q ss_pred cccccccccCCCceeeccCCcccCCCCCCccCC-cccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccC
Q 042662 307 SIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNF-NVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIG 385 (690)
Q Consensus 307 ~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 385 (690)
++|... ++|+.|++++|.+++ ++ .+ ++|++|++++|.+++ +|.. +++|++|++++|+++ .+|.
T Consensus 291 ~l~~~~---~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--- 354 (454)
T 1jl5_A 291 GLSELP---PNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--- 354 (454)
T ss_dssp EESCCC---TTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---
T ss_pred cccCcC---CcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---
Confidence 866432 678888888888874 22 22 478888888888886 5543 578888888888887 4555
Q ss_pred CCCCCCEEECcCCcCcc--cCChhhhcC-------------CCCCEEEcCCCcCcc--cCC
Q 042662 386 DLISLKSLNLSNNNLSG--TIPISLEKL-------------LDLKEINVSFNNLEG--EIP 429 (690)
Q Consensus 386 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l-------------~~L~~l~ls~n~l~~--~~p 429 (690)
.+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 355 ~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 46788888888888888 677777666 678888888888876 444
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.4e-38 Score=341.23 Aligned_cols=372 Identities=28% Similarity=0.377 Sum_probs=277.0
Q ss_pred CCCcccCCCCCCCEEEccCCcCCccCCccccCCCCC-------------CEEECcCCcccccCCcccCCCCCCCeeeccc
Q 042662 1 EIPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSL-------------SSLDLSDNSLTGEIPYEIGNLHNLEWMAFSF 67 (690)
Q Consensus 1 ~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 67 (690)
+||++|+++++|++|++++|.+.|.+|.+++++++| ++|++++|.+++ +|.. .++|++|++++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~ 100 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASC 100 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCS
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccC
Confidence 479999999999999999999999999999998875 999999999985 4542 47899999999
Q ss_pred CcCcccCCccccCCCCCCEEecCCCCC-------CCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCcccc
Q 042662 68 NKLVGVVPTAIFNVSTLKSLYLHNVRL-------PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFG 140 (690)
Q Consensus 68 n~l~~~~p~~l~~l~~L~~L~l~~~~l-------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 140 (690)
|++++ +|.. +++|++|++++|.+ ++|++|++++|.+++ +| .+.++++|++|++++|++++ +|..+
T Consensus 101 n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~- 172 (454)
T 1jl5_A 101 NSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP- 172 (454)
T ss_dssp SCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC-
T ss_pred CcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc-
Confidence 99997 6753 48999999999944 479999999999996 77 59999999999999999997 56543
Q ss_pred CCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCC
Q 042662 141 SLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNL 220 (690)
Q Consensus 141 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 220 (690)
.+|++|++++|.+.+. +.++.+++|+.|++++|.+++ +|... .+|++|++++|.++ .+|. ++.+
T Consensus 173 --~~L~~L~L~~n~l~~l-------~~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~n~l~-~lp~-~~~l 236 (454)
T 1jl5_A 173 --PSLEFIAAGNNQLEEL-------PELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNILE-ELPE-LQNL 236 (454)
T ss_dssp --TTCCEEECCSSCCSSC-------CCCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSCCS-SCCC-CTTC
T ss_pred --ccccEEECcCCcCCcC-------ccccCCCCCCEEECCCCcCCc-CCCCc----CcccEEECcCCcCC-cccc-cCCC
Confidence 5899999999999874 357899999999999999986 44322 38999999999998 6774 8999
Q ss_pred CCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeC
Q 042662 221 TNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYL 300 (690)
Q Consensus 221 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 300 (690)
++|+.|++++|.+++ +|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.+++.. .. .++|+.|++
T Consensus 237 ~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~~---~~~L~~L~l 304 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-EL---PPNLYYLNA 304 (454)
T ss_dssp TTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-CC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-Cc---CCcCCEEEC
Confidence 999999999999986 443 24799999999999986 5543 478999999999998742 11 268999999
Q ss_pred CCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccc--
Q 042662 301 GSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQG-- 378 (690)
Q Consensus 301 ~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 378 (690)
++|++++++.. .++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|++|++++|++++
T Consensus 305 ~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 305 SSNEIRSLCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp CSSCCSEECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC
T ss_pred cCCcCCcccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCC
Confidence 99999987642 2589999999999986 5544 5899999999999984 565 47899999999999998
Q ss_pred cCCcccCCC-------------CCCCEEECcCCcCcc--cCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 379 SIPNSIGDL-------------ISLKSLNLSNNNLSG--TIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 379 ~~~~~l~~l-------------~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
.+|..+..+ ++|+.||+++|.+++ .+|. +++.+.+.+|.+.+.+|
T Consensus 374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYE 433 (454)
T ss_dssp CCCTTCCEEECCC-----------------------------------------------------
T ss_pred CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccc
Confidence 788888877 889999999999997 5554 45667788888877654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.6e-38 Score=350.41 Aligned_cols=388 Identities=23% Similarity=0.227 Sum_probs=312.0
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNV 81 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 81 (690)
||..+. ++|++|+|++|.+++..|.+|.++++|++|+|++|.+++..|..|+++++|++|++++|+++ .+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 566553 89999999999999888889999999999999999999888999999999999999999998 56665 89
Q ss_pred CCCCEEecCCC------------CCCCCCEEeccCCccCccCCccccCCCCC--CeEecccCcc--cccCCccccCC---
Q 042662 82 STLKSLYLHNV------------RLPNLEELLLWGNNFSGTIPSFIFNASKL--FTLGLEENSF--SGFIPNTFGSL--- 142 (690)
Q Consensus 82 ~~L~~L~l~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~l--- 142 (690)
++|++|++++| .+++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..|..+
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 99999999998 346899999999999863 34455555 9999999999 77777766653
Q ss_pred -----------------------CCCCEEEccCCcCC-----CcCC---CCCc------------------ccCCCCCCC
Q 042662 143 -----------------------RNLEWLSLNDNYLT-----SSTP---KLSF------------------LSSLSNCKY 173 (690)
Q Consensus 143 -----------------------~~L~~L~L~~n~l~-----~~~~---~~~~------------------l~~l~~l~~ 173 (690)
++|+.|++++|... +... ..+. +......++
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 45666666665310 0000 0000 000011248
Q ss_pred CCEEEccCCcCCCCCChhh-----hhccccCcEEEeecCcccccCc-cccc---CCCCCCEEECCCCcCcccchhhhcCC
Q 042662 174 LEYFGFYNNPLGGILPRAI-----GNLSQSMEDFQMHNCNISGSIP-EEIS---NLTNLIAIYLGRNKLNGSIPIALGKL 244 (690)
Q Consensus 174 L~~L~l~~n~l~~~~p~~~-----~~~~~~L~~L~L~~n~l~~~~p-~~l~---~l~~L~~L~l~~n~l~~~~p~~l~~l 244 (690)
|++|++++|.++|.+|..+ ..+. .|+.++++.+.+ .+| ..+. ...+|+.|++++|.+.... ....+
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~-~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 352 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALK-SLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSP 352 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCC-EEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred ccEEEEeccEeeccccchhhhcccccch-heehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCC
Confidence 9999999999999999877 4443 555566666665 344 2222 2367999999999986432 12688
Q ss_pred CCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCccc--CcccccCCCCCCeeeCCCCccCc-cccc-ccccCCCce
Q 042662 245 KKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGF--IPACSGNLTNLRKLYLGSNQLTS-IPST-LWNLKDILH 320 (690)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-~p~~-~~~~~~L~~ 320 (690)
++|++|++++|.+++..|..+..+++|+.|++++|++++. .|..++.+++|+.|++++|.+++ +|.. +..+++|+.
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 9999999999999998999999999999999999999974 45678999999999999999998 8864 778899999
Q ss_pred eeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcc-cCCCCCCCEEECcCCc
Q 042662 321 LNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNS-IGDLISLKSLNLSNNN 399 (690)
Q Consensus 321 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~ 399 (690)
|++++|.+++..|..+. ++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 99999999987776654 79999999999998 67777779999999999999999 45554 8999999999999999
Q ss_pred CcccCCh
Q 042662 400 LSGTIPI 406 (690)
Q Consensus 400 l~~~~p~ 406 (690)
+.+..+.
T Consensus 509 ~~c~c~~ 515 (562)
T 3a79_B 509 WDCTCPG 515 (562)
T ss_dssp BCCCHHH
T ss_pred cCCCcch
Confidence 9987653
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-36 Score=330.75 Aligned_cols=345 Identities=29% Similarity=0.457 Sum_probs=198.2
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEe
Q 042662 9 LAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLY 88 (690)
Q Consensus 9 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 88 (690)
+++++.|+++++.+.. +| .+..+++|++|+|++|.+++..| ++++++|++|++++|++.+..| ++++++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~--- 115 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT--- 115 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC---
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC---
Confidence 5667777777777763 44 36677777777777777765433 7777777777777777765433 55555433
Q ss_pred cCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCC
Q 042662 89 LHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSL 168 (690)
Q Consensus 89 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l 168 (690)
+|++++|.+++. +. +.++++|++|++++|.+++. + .+.++++|++|+++ |.+... ..+
T Consensus 116 ----------~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-------~~~ 173 (466)
T 1o6v_A 116 ----------GLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-------KPL 173 (466)
T ss_dssp ----------EEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-------GGG
T ss_pred ----------EEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-------hhh
Confidence 333444444432 22 56677777777777777653 2 36677777777775 333221 235
Q ss_pred CCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCC
Q 042662 169 SNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQ 248 (690)
Q Consensus 169 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 248 (690)
.++++|+.|++++|.+++. .. +..+++|+.|++++|.+++..| ++.+++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~--~~-------------------------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 224 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDI--SV-------------------------LAKLTNLESLIATNNQISDITP--LGILTNLD 224 (466)
T ss_dssp TTCTTCCEEECCSSCCCCC--GG-------------------------GGGCTTCSEEECCSSCCCCCGG--GGGCTTCC
T ss_pred ccCCCCCEEECcCCcCCCC--hh-------------------------hccCCCCCEEEecCCccccccc--ccccCCCC
Confidence 5566666666666655432 12 3444444444444444443333 34444455
Q ss_pred EEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcc
Q 042662 249 LLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSF 328 (690)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l 328 (690)
.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|+.|++++|++
T Consensus 225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL 299 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC
T ss_pred EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc
Confidence 555555544432 234445555555555555544333 4445555555555555555443 44555555555555555
Q ss_pred cCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhh
Q 042662 329 TGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISL 408 (690)
Q Consensus 329 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 408 (690)
.+..+ +..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.|++++|++++..| +
T Consensus 300 ~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~ 371 (466)
T 1o6v_A 300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--L 371 (466)
T ss_dssp SCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--G
T ss_pred cCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--h
Confidence 54332 4555666666666666655444 45666677777777766643 356667777777777777776655 6
Q ss_pred hcCCCCCEEEcCCCcCcc
Q 042662 409 EKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 409 ~~l~~L~~l~ls~n~l~~ 426 (690)
..+++|+.|++++|++++
T Consensus 372 ~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCCEEEEC
T ss_pred hcCCCCCEEeccCCcccC
Confidence 667777777777777765
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.5e-37 Score=332.03 Aligned_cols=349 Identities=18% Similarity=0.178 Sum_probs=239.9
Q ss_pred cccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCC
Q 042662 4 VELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVST 83 (690)
Q Consensus 4 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 83 (690)
..++++++|++|++++|.+++. | .++.+++|++|+|++|.+++. | ++.+++|++|++++|++++. | ++++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTK 107 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCc
Confidence 3567788999999999998864 5 688899999999999998864 4 88899999999999998864 3 666665
Q ss_pred CCEEecCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCC
Q 042662 84 LKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLS 163 (690)
Q Consensus 84 L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 163 (690)
|++|++++|.+++ +| +..+++|++|++++|++++. + ++++++|++|++++|...+..
T Consensus 108 -------------L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~---- 164 (457)
T 3bz5_A 108 -------------LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL---- 164 (457)
T ss_dssp -------------CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC----
T ss_pred -------------CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc----
Confidence 4455555555554 33 67778888888888888874 3 778888888888888554432
Q ss_pred cccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcC
Q 042662 164 FLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGK 243 (690)
Q Consensus 164 ~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 243 (690)
.+..+++|+.|++++|.+++ +| +..++ +|+.|++++|++++. .++.+++|+.|++++|++++ +| +..
T Consensus 165 ---~~~~l~~L~~L~ls~n~l~~-l~--l~~l~-~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~ 231 (457)
T 3bz5_A 165 ---DVTPQTQLTTLDCSFNKITE-LD--VSQNK-LLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTP 231 (457)
T ss_dssp ---CCTTCTTCCEEECCSSCCCC-CC--CTTCT-TCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred ---ccccCCcCCEEECCCCccce-ec--cccCC-CCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccc
Confidence 35667888888888888876 34 55555 788888888888764 36777888888888888876 44 677
Q ss_pred CCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCc-ccccccccCCCceee
Q 042662 244 LKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLN 322 (690)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~~~~L~~L~ 322 (690)
+++|+.|++++|.+++..+ ..+++|+.|++++| +|+.|++++|.+.+ +| +..+++|+.|+
T Consensus 232 l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 232 LTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELD 292 (457)
T ss_dssp CTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred cCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEE
Confidence 7888888888888876543 34455555554443 23334444443333 32 22334444444
Q ss_pred ccCCcccCCCCC--------CccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEE
Q 042662 323 LSSNSFTGPLPL--------KIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLN 394 (690)
Q Consensus 323 L~~n~l~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 394 (690)
+++|...+.+|. .+..+++|++|++++|++++. .++.+++|+.|++++|++++ ++.|..|+
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~ 361 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP 361 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence 444444333332 123335777888888888764 27777888888888887774 24566667
Q ss_pred CcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC
Q 042662 395 LSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE 431 (690)
Q Consensus 395 Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 431 (690)
+++|.+.|. ..+..|..+++++|+++|.+|..
T Consensus 362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 777877765 24456777899999999998864
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.7e-36 Score=328.06 Aligned_cols=346 Identities=27% Similarity=0.425 Sum_probs=258.4
Q ss_pred CCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCccC
Q 042662 32 NLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTI 111 (690)
Q Consensus 32 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~ 111 (690)
.+++|+.|+++++.+.. +| .+..+++|++|++++|.+++..| +.++++ |++|++++|.+.+..
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~-------------L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTK-------------LVDILMNNNQIADIT 106 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTT-------------CCEEECCSSCCCCCG
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhcccc-------------CCEEECCCCccccCh
Confidence 35677777777777663 34 36667777777777776664332 544444 333344444444322
Q ss_pred CccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChh
Q 042662 112 PSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRA 191 (690)
Q Consensus 112 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~ 191 (690)
+ +.++++|++|++++|.+++..+ +.++++|++|++++|.+.+. + .
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------~------------------------~ 151 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-------S------------------------A 151 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-------G------------------------G
T ss_pred h--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-------h------------------------h
Confidence 2 5566666666666666654322 55666666666666654432 1 2
Q ss_pred hhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCC
Q 042662 192 IGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAAL 271 (690)
Q Consensus 192 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 271 (690)
+..+. +|++|+++ |.+.+.. .+.++++|+.|++++|.+++. ..+..+++|++|++++|.+.+..| ++.+++|
T Consensus 152 ~~~l~-~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 223 (466)
T 1o6v_A 152 LSGLT-SLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNL 223 (466)
T ss_dssp GTTCT-TCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTC
T ss_pred hccCC-cccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCC
Confidence 33333 56666664 3333322 278899999999999998864 348899999999999999997655 7789999
Q ss_pred CEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccc
Q 042662 272 FQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNN 351 (690)
Q Consensus 272 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 351 (690)
+.|++++|.+.+. ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.
T Consensus 224 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 224 DELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred CEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence 9999999999865 357889999999999999999765 7889999999999999987554 8899999999999999
Q ss_pred cccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCC
Q 042662 352 FSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPRE 431 (690)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 431 (690)
+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| .
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~ 371 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-L 371 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-G
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-h
Confidence 987654 7889999999999999997765 78999999999999999975 468899999999999999999887 4
Q ss_pred CCCCCCccccccCCCCCC
Q 042662 432 GPFRNFSAESFKGNELLC 449 (690)
Q Consensus 432 ~~~~~~~~~~~~~n~~lc 449 (690)
..++.+..+.+.+|+...
T Consensus 372 ~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 372 ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCTTCCEEECCCEEEEC
T ss_pred hcCCCCCEEeccCCcccC
Confidence 556777777777776543
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=332.52 Aligned_cols=321 Identities=21% Similarity=0.177 Sum_probs=211.5
Q ss_pred CeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCcccc
Q 042662 61 EWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFG 140 (690)
Q Consensus 61 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 140 (690)
+.++.++++++ .+|..+. ++++.|+|++|.+++..|..+.++++|++|+|++|.+++..|..|.
T Consensus 14 ~~v~c~~~~l~-~ip~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP---------------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CEEEeCCCCcC-cCCCCCC---------------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 56777777666 4555432 2466777777777766677777788888888888888877777788
Q ss_pred CCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCC
Q 042662 141 SLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNL 220 (690)
Q Consensus 141 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 220 (690)
++++|++|+|++|.+..... ..+.++++|+.|++++|.+.+..|..+..+. +|++|++++|.+++..+..|..+
T Consensus 78 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l 151 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLKLIPL-----GVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGL 151 (477)
T ss_dssp TCTTCCEEECCSSCCCSCCT-----TSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTC
T ss_pred CCccCCEEECCCCcCCccCc-----ccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCC
Confidence 88888888888887766542 3456677777777777777766666666665 67777777777776666667777
Q ss_pred CCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeC
Q 042662 221 TNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYL 300 (690)
Q Consensus 221 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 300 (690)
++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.++.......+|+.|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 77777777777777666666777777777777777776666666666777777777776665555554444456666666
Q ss_pred CCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcccccc
Q 042662 301 GSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 301 ~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
++|+++.+|. .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+++|+.|+|++|++++.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCcee
Confidence 6666666553 455556666666666666655555555556666666666666555555555555666666666655554
Q ss_pred CCcccCCCCCCCEEECcCCcCccc
Q 042662 380 IPNSIGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 380 ~~~~l~~l~~L~~L~Ls~n~l~~~ 403 (690)
.+..|..+++|+.|++++|.+.+.
T Consensus 312 ~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 312 EESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CGGGBSCGGGCCEEECCSSCEECS
T ss_pred CHhHcCCCcccCEEEccCCCccCc
Confidence 444555555555555555555543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=316.67 Aligned_cols=320 Identities=21% Similarity=0.179 Sum_probs=210.3
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCC
Q 042662 12 LQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN 91 (690)
Q Consensus 12 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 91 (690)
-+.++.+++.++ .+|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L------- 82 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL------- 82 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccC-------
Confidence 367888888887 5676553 588999999999988888889999999999999999888888888877764
Q ss_pred CCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCC
Q 042662 92 VRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNC 171 (690)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l 171 (690)
++|+|++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..+..+
T Consensus 83 ------~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l 151 (477)
T 2id5_A 83 ------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----RAFSGL 151 (477)
T ss_dssp ------CEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----TSSTTC
T ss_pred ------CEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-----hhccCC
Confidence 444445555554444556788888888888888888878888888888888888888776542 456667
Q ss_pred CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEe
Q 042662 172 KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLS 251 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 251 (690)
++|+.|++++|.+++..+..+..+. +|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|+
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 7777777777766655555555555 666666666666665555666666666666666665555555444445666666
Q ss_pred CcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc-cccccccCCCceeeccCCcccC
Q 042662 252 LEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI-PSTLWNLKDILHLNLSSNSFTG 330 (690)
Q Consensus 252 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-p~~~~~~~~L~~L~L~~n~l~~ 330 (690)
+++|.++...+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++++ |..+..+++|+.|++++|++++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 666665543334455556666666666665555555555555555555555555553 3444455555555555555554
Q ss_pred CCCCCccCCcccceeeccccccc
Q 042662 331 PLPLKIGNFNVLIQLDLSMNNFS 353 (690)
Q Consensus 331 ~~~~~~~~l~~L~~L~Ls~n~l~ 353 (690)
..+..+..+++|++|++++|.+.
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEE
T ss_pred eCHhHcCCCcccCEEEccCCCcc
Confidence 44444444555555555555443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-34 Score=311.52 Aligned_cols=318 Identities=20% Similarity=0.205 Sum_probs=249.9
Q ss_pred CcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCE
Q 042662 20 NSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEE 99 (690)
Q Consensus 20 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~ 99 (690)
....+..+.+++++++|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++ |++
T Consensus 28 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~-------------L~~ 89 (457)
T 3bz5_A 28 FEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTN-------------LTY 89 (457)
T ss_dssp TTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTT-------------CSE
T ss_pred cCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCC-------------CCE
Confidence 334445566788999999999999999964 5 799999999999999999874 3 666655 555
Q ss_pred EeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEc
Q 042662 100 LLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGF 179 (690)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l 179 (690)
|++++|.+++. | ++++++|++|++++|++++. | ++++++|++|++++|.+++. .++.+++|+.|++
T Consensus 90 L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--------~l~~l~~L~~L~l 155 (457)
T 3bz5_A 90 LACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--------DVSHNTQLTELDC 155 (457)
T ss_dssp EECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--------CCTTCTTCCEEEC
T ss_pred EECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee--------ccccCCcCCEEEC
Confidence 66666666643 3 78899999999999999974 4 89999999999999998874 2678899999999
Q ss_pred cCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcc
Q 042662 180 YNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEG 259 (690)
Q Consensus 180 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 259 (690)
++|...+.+ .+..+. +|++|++++|++++ +| ++.+++|+.|++++|.+++. .++.+++|+.|++++|++++
T Consensus 156 ~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 156 HLNKKITKL--DVTPQT-QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp TTCSCCCCC--CCTTCT-TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred CCCCccccc--ccccCC-cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 999766665 355665 89999999999987 44 78899999999999999875 38889999999999999997
Q ss_pred cCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCC
Q 042662 260 SIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNF 339 (690)
Q Consensus 260 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 339 (690)
+| +..+++|+.|++++|.+++.. ++.+++|+.|+++.| +|+.|++++|.+.+.+| ++.+
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTC
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--cccc
Confidence 55 788999999999999998764 456788999998775 46677899999888777 5688
Q ss_pred cccceeeccccccccccCcc--------ccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcc
Q 042662 340 NVLIQLDLSMNNFSGVIPTK--------IGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSG 402 (690)
Q Consensus 340 ~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 402 (690)
++|+.|++++|...+.+|.. +..+++|+.|++++|++++. + ++.+++|+.||+++|++++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 99999999999988777642 33444555555555555542 1 5555555555555555553
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=299.30 Aligned_cols=289 Identities=21% Similarity=0.229 Sum_probs=171.5
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEE
Q 042662 8 NLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSL 87 (690)
Q Consensus 8 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 87 (690)
.++++++|++++|.++...+..|..+++|++|+|++|.+++..+..|+++++|++|++++|.+++..|..++++++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---- 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL---- 118 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT----
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC----
Confidence 3567777777777777544444677777777777777777666667777777777777777777666666666655
Q ss_pred ecCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccC
Q 042662 88 YLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSS 167 (690)
Q Consensus 88 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 167 (690)
|++|++++|.++...+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+... .
T Consensus 119 ---------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~ 181 (390)
T 3o6n_A 119 ---------LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------D 181 (390)
T ss_dssp ---------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--------C
T ss_pred ---------CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--------c
Confidence 34444444444422223346677777777777777776666677777777777777776653 2
Q ss_pred CCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCC
Q 042662 168 LSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKL 247 (690)
Q Consensus 168 l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 247 (690)
+..+++|+.|++++|.+++.. .. .+|++|++++|.++.. |.. ..++|+.|++++|.+++. ..+..+++|
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~~-----~~-~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L 250 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTLA-----IP-IAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGL 250 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEEE-----CC-SSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred cccccccceeecccccccccC-----CC-CcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCc
Confidence 344566666666666555321 11 2566666666665533 221 234555666666655542 345555555
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCc
Q 042662 248 QLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNS 327 (690)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~ 327 (690)
++|++++|.+.+..|..|..+++|+.|++++|++++. |..+..+++|+.|++++|+++.+|..+..+++|+.|++++|.
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 5555555555555555555555555555555555532 333344555555555555555555444445555555555555
Q ss_pred cc
Q 042662 328 FT 329 (690)
Q Consensus 328 l~ 329 (690)
++
T Consensus 330 i~ 331 (390)
T 3o6n_A 330 IV 331 (390)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.3e-33 Score=315.41 Aligned_cols=310 Identities=21% Similarity=0.234 Sum_probs=174.3
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEec
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYL 89 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 89 (690)
++++.|++++|.+....+..|.++++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------ 124 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL------ 124 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC------
Confidence 44555555555555433333445555555555555555444445555555555555555555444444444443
Q ss_pred CCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCC
Q 042662 90 HNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLS 169 (690)
Q Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~ 169 (690)
|++|+|++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+.+.. +.
T Consensus 125 -------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~ 189 (597)
T 3oja_B 125 -------LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------LS 189 (597)
T ss_dssp -------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--------GG
T ss_pred -------CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--------hh
Confidence 233333333333222222344555555555555555544444555555555555555444321 22
Q ss_pred CCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCE
Q 042662 170 NCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQL 249 (690)
Q Consensus 170 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 249 (690)
.++ +|+.|++++|.+++ +...++|+.|++++|.++...+. + .++|+.
T Consensus 190 ~l~-------------------------~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~ 236 (597)
T 3oja_B 190 LIP-------------------------SLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTI 236 (597)
T ss_dssp GCT-------------------------TCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCE
T ss_pred hhh-------------------------hhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCE
Confidence 233 45555555555542 22344566666666666533222 1 246666
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCccc
Q 042662 250 LSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFT 329 (690)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~ 329 (690)
|++++|.+++. ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|.++++|..+..+++|+.|+|++|.++
T Consensus 237 L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~ 314 (597)
T 3oja_B 237 LKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL 314 (597)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC
Confidence 66666666642 4566666677777777776666666666677777777777777766666666677777777777766
Q ss_pred CCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcccccc
Q 042662 330 GPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 330 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
.+|..+..+++|+.|++++|.+++.. +..+++|+.|++++|++.+.
T Consensus 315 -~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 315 -HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp -CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred -ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 45556666777777777777776442 55677888888888887754
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=5.1e-33 Score=296.23 Aligned_cols=333 Identities=19% Similarity=0.191 Sum_probs=229.9
Q ss_pred CCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCC
Q 042662 95 PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYL 174 (690)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L 174 (690)
++++.|++++|.+....+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..++.+++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCC
Confidence 345555555555553333334556666666666666665555566666666666666666555431 335556666
Q ss_pred CEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcC
Q 042662 175 EYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLED 254 (690)
Q Consensus 175 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 254 (690)
++|++++|.++...+..+..++ +|++|++++|++++..|..+..+++|+.|++++|.+++. .+..+++|+.|++++
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS
T ss_pred CEEECCCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc
Confidence 6666666666633333345554 677777777777766666677777788888888777754 245667788888888
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPL 334 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~ 334 (690)
|.+.+ +...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|.
T Consensus 196 n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 196 NLLST-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SCCSE-----EECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ccccc-----cCCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChh
Confidence 77664 23345788888888887765332 246888888888888876 3567788888888888888887788
Q ss_pred CccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCC
Q 042662 335 KIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDL 414 (690)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 414 (690)
.+..+++|++|++++|.+++ +|..+..+++|++|++++|++. .+|..+..+++|+.|++++|.++.. + +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCC
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccC
Confidence 88888889999999988875 4556677889999999999887 5677778889999999999998854 3 6678889
Q ss_pred CEEEcCCCcCcccCCCCCCCCCCccccccCCCCCCCC
Q 042662 415 KEINVSFNNLEGEIPREGPFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 415 ~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 451 (690)
+.|++++|++.+.... ..+..+....+.+++..|..
T Consensus 342 ~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 342 KNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 9999999998875322 23444444555666666653
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-33 Score=313.80 Aligned_cols=334 Identities=19% Similarity=0.194 Sum_probs=256.3
Q ss_pred CCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCC
Q 042662 94 LPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKY 173 (690)
Q Consensus 94 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~ 173 (690)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|+++++|++|+|++|.+.+..+ ..++.+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCC
Confidence 3456666677666665444455667777777777777777666677777777777777777766542 34567777
Q ss_pred CCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCc
Q 042662 174 LEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLE 253 (690)
Q Consensus 174 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 253 (690)
|++|++++|.+++..+..+..++ +|++|++++|.+++..|..++.+++|+.|++++|.+++.. ++.+++|+.|+++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CCEEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 77777777777754444456665 7888888888888777777888888888888888887642 4567788888888
Q ss_pred CCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCC
Q 042662 254 DNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLP 333 (690)
Q Consensus 254 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~ 333 (690)
+|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|
T Consensus 201 ~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 201 YNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp SSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEES
T ss_pred cCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCH
Confidence 887764 334567888999988887654432 36899999999998885 567788999999999999998888
Q ss_pred CCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCC
Q 042662 334 LKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLD 413 (690)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 413 (690)
..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++. | +..+++
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~ 346 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT 346 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC
T ss_pred HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCC
Confidence 899999999999999999986 4666778899999999999998 6788888899999999999999865 3 667889
Q ss_pred CCEEEcCCCcCcccCCCCCCCCCCccccccCCCCCCCC
Q 042662 414 LKEINVSFNNLEGEIPREGPFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 414 L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 451 (690)
|+.|++++|++.|..+. ..+..+....+.++...|+.
T Consensus 347 L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 347 LKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 99999999999876432 23555555667788888874
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-32 Score=287.95 Aligned_cols=285 Identities=26% Similarity=0.379 Sum_probs=174.0
Q ss_pred ccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhh
Q 042662 115 IFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGN 194 (690)
Q Consensus 115 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 194 (690)
+..+++|++|++++|.+++. +. +.++++|++|++++|.+... +.+..+++|++|++++|.+.+..+ +..
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~-------~~~~~l~~L~~L~l~~n~i~~~~~--~~~ 130 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI-------SALQNLTNLRELYLNEDNISDISP--LAN 130 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-------GGGTTCTTCSEEECTTSCCCCCGG--GTT
T ss_pred hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc-------hHHcCCCcCCEEECcCCcccCchh--hcc
Confidence 33444444444444444432 11 44444444444444444332 234444444444444444443221 333
Q ss_pred ccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 042662 195 LSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQL 274 (690)
Q Consensus 195 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 274 (690)
+. +|+.|++++|.....++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 131 l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 204 (347)
T 4fmz_A 131 LT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204 (347)
T ss_dssp CT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred CC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcccee
Confidence 33 555555555544333332 5666666666666666654433 5666666666666666664322 5666667777
Q ss_pred EeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeecccccccc
Q 042662 275 DLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG 354 (690)
Q Consensus 275 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 354 (690)
++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 205 ~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 205 TAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred ecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 777776665443 5566677777777777776655 66667777777777776643 346677777777777777765
Q ss_pred ccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCc
Q 042662 355 VIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLE 425 (690)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 425 (690)
. ..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..| +..+++|+.+++++|+++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4 346777888888888888887777778888888888888888887665 777888888888888764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-32 Score=286.42 Aligned_cols=307 Identities=26% Similarity=0.394 Sum_probs=158.4
Q ss_pred ccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCc
Q 042662 30 IFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSG 109 (690)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~ 109 (690)
+..+++|++|++++|.+.. +| .+..+++|++|++++|++++. |. +..+++|++|+++ +|.++.
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~-------------~n~i~~ 102 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIG-------------TNKITD 102 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECC-------------SSCCCC
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEcc-------------CCcccC
Confidence 3456666666666666653 33 356666666666666666532 22 4444443333333 333332
Q ss_pred cCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCC
Q 042662 110 TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILP 189 (690)
Q Consensus 110 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p 189 (690)
+| .+..+++|++|++++|.+++. +. +.++++|++|++++|...... ..+..+++|+.|++++|.+.+..+
T Consensus 103 -~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~ 172 (347)
T 4fmz_A 103 -IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL------SPLSNMTGLNYLTVTESKVKDVTP 172 (347)
T ss_dssp -CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC------GGGTTCTTCCEEECCSSCCCCCGG
T ss_pred -ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc------cchhhCCCCcEEEecCCCcCCchh
Confidence 12 355666666666666666643 22 666666666666666443322 234455555555555554443222
Q ss_pred hhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCC
Q 042662 190 RAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLA 269 (690)
Q Consensus 190 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 269 (690)
+..+. +|++|++++|.+++..+ +..+++|+.+++++|.+++..+ +.. ++
T Consensus 173 --~~~l~-~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------~~ 221 (347)
T 4fmz_A 173 --IANLT-DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VAN------------------------MT 221 (347)
T ss_dssp --GGGCT-TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGG------------------------CT
T ss_pred --hccCC-CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhc------------------------CC
Confidence 22332 44444444444432211 3344444444444444443222 344 44
Q ss_pred CCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccc
Q 042662 270 ALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSM 349 (690)
Q Consensus 270 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 349 (690)
+|+.|++++|.+++..+ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNN 296 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcC
Confidence 44444444444443322 444445555555555444442 344445555555555555432 2345566666666666
Q ss_pred cccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCc
Q 042662 350 NNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 350 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 401 (690)
|.+++..+..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 297 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66666666666667777777777777765544 566777777777777664
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-33 Score=289.92 Aligned_cols=253 Identities=34% Similarity=0.568 Sum_probs=212.3
Q ss_pred cCcEEEeecCcccc--cCcccccCCCCCCEEECCC-CcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 042662 198 SMEDFQMHNCNISG--SIPEEISNLTNLIAIYLGR-NKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQL 274 (690)
Q Consensus 198 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 274 (690)
+++.|++++|++++ .+|..++.+++|++|++++ |.+.+.+|..|+.+++|++|++++|.+++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57777777777777 6777777777777777774 77777777777777777777777777777777777777778888
Q ss_pred EeeCCcCcccCcccccCCCCCCeeeCCCCccCc-ccccccccC-CCceeeccCCcccCCCCCCccCCcccceeecccccc
Q 042662 275 DLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTLWNLK-DILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNF 352 (690)
Q Consensus 275 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 352 (690)
++++|.+++.+|..+..+++|++|++++|++++ +|..+..++ .|+.|++++|.+++.+|..+..+. |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 888887777777777777888888888888874 777777776 788888888888888888888877 99999999999
Q ss_pred ccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCCCC
Q 042662 353 SGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPREG 432 (690)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~ 432 (690)
++..|..+..+++|+.|++++|++++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888899999999999999999877666 7888999999999999999999999999999999999999999999988
Q ss_pred CCCCCccccccCCCCCCCCC
Q 042662 433 PFRNFSAESFKGNELLCGMP 452 (690)
Q Consensus 433 ~~~~~~~~~~~~n~~lc~~~ 452 (690)
.++.+....+.+|+.+|+.|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cccccChHHhcCCCCccCCC
Confidence 88889999999999999964
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=2.3e-32 Score=281.41 Aligned_cols=251 Identities=28% Similarity=0.438 Sum_probs=208.9
Q ss_pred CCCCEEEccCCcCCC--CCChhhhhccccCcEEEeec-CcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCC
Q 042662 172 KYLEYFGFYNNPLGG--ILPRAIGNLSQSMEDFQMHN-CNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQ 248 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 248 (690)
.+++.|++++|.+++ .+|..+..+. +|++|++++ |++.+.+|..++++++|++|++++|.+++.+|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 456777777777777 7777777776 788888884 788878888888888888888888888878888888888888
Q ss_pred EEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCC-CCCeeeCCCCccCc-ccccccccCCCceeeccCC
Q 042662 249 LLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLT-NLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSN 326 (690)
Q Consensus 249 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~-~p~~~~~~~~L~~L~L~~n 326 (690)
+|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|++++ +|..+..+. |+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888888888888888888888888888888888888777 88888888888885 777777766 888888888
Q ss_pred cccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCCh
Q 042662 327 SFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPI 406 (690)
Q Consensus 327 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~ 406 (690)
.+++..|..+..+++|+.|++++|.+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 88888888888889999999999988876665 77788999999999999988999999999999999999999988887
Q ss_pred hhhcCCCCCEEEcCCCcCcc
Q 042662 407 SLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 407 ~l~~l~~L~~l~ls~n~l~~ 426 (690)
. ..+++|+.+++++|+..+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccccChHHhcCCCCcc
Confidence 6 778889999999998433
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.9e-30 Score=269.87 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=238.0
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecC
Q 042662 11 ELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLH 90 (690)
Q Consensus 11 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 90 (690)
+++.++++++.++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|++++|++++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 7999999999998 6777664 699999999999998888899999999999999999998889999988876555555
Q ss_pred CCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCC
Q 042662 91 NVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSN 170 (690)
Q Consensus 91 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~ 170 (690)
+| .++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+...... + ..+..
T Consensus 111 ~n-------------~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~--~~~~~ 171 (332)
T 2ft3_A 111 KN-------------HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE-P--GAFDG 171 (332)
T ss_dssp SS-------------CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC-T--TSSCS
T ss_pred CC-------------cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC-c--ccccC
Confidence 54 444 4455443 7899999999999877777789999999999999988642100 1 44566
Q ss_pred CCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEE
Q 042662 171 CKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLL 250 (690)
Q Consensus 171 l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 250 (690)
+ +|+.|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 172 l-~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 172 L-KLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp C-CCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred C-ccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 6 89999999999886 555443 389999999999998888889999999999999999998888889999999999
Q ss_pred eCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccC------CCCCCeeeCCCCccC--c-ccccccccCCCcee
Q 042662 251 SLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGN------LTNLRKLYLGSNQLT--S-IPSTLWNLKDILHL 321 (690)
Q Consensus 251 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~-~p~~~~~~~~L~~L 321 (690)
++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. .++|+.|++++|.+. . .|..+..+++|+.+
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 99999998 77888999999999999999999887776654 367899999999987 3 45567889999999
Q ss_pred eccCCc
Q 042662 322 NLSSNS 327 (690)
Q Consensus 322 ~L~~n~ 327 (690)
++++|+
T Consensus 326 ~l~~n~ 331 (332)
T 2ft3_A 326 QFGNYK 331 (332)
T ss_dssp EC----
T ss_pred hccccc
Confidence 999875
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=266.22 Aligned_cols=273 Identities=22% Similarity=0.201 Sum_probs=139.1
Q ss_pred CCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCE
Q 042662 97 LEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176 (690)
Q Consensus 97 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~ 176 (690)
++.|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+.... ..+. ++|+.
T Consensus 54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~------~~~~--~~L~~ 125 (330)
T 1xku_A 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP------EKMP--KTLQE 125 (330)
T ss_dssp CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC------SSCC--TTCCE
T ss_pred CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC------hhhc--ccccE
Confidence 444445555555444445555666666666666666555666666666666666666655432 1111 34555
Q ss_pred EEccCCcCCCCCChhhhhccccCcEEEeecCcccc--cCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcC
Q 042662 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG--SIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLED 254 (690)
Q Consensus 177 L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 254 (690)
|++++|.+++..+..+..+. +|+.|++++|.++. ..+..+..+++|+.|++++|.++. +|..+. ++|++|++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 201 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDG 201 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTT
T ss_pred EECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCC
Confidence 55555555444444444444 45555555555432 344445555555555555555542 232222 4555555555
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPL 334 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~ 334 (690)
|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++++..+.
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh
Confidence 55555445555555555555555555555444445555555555555555555555555555555555555555433332
Q ss_pred CccCCcccceeeccccccccccCccccCCCCCCeeeccCccccc--cCCcccCCCCCCCEEECcCCc
Q 042662 335 KIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQG--SIPNSIGDLISLKSLNLSNNN 399 (690)
Q Consensus 335 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~ 399 (690)
.+.... .....+.|+.|++++|.+.. ..|..+..+.+++.+++++|+
T Consensus 282 ~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 222110 00113556667777776642 445666677777777777663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.4e-30 Score=265.78 Aligned_cols=291 Identities=21% Similarity=0.253 Sum_probs=237.4
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEec
Q 042662 10 AELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYL 89 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 89 (690)
.+++.++++++.++ .+|..+. ++|++|+|++|.+++..+..|+++++|++|++++|++++..|..|+++++|++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 37999999999998 5776654 68999999999999887888999999999999999999888999998887666655
Q ss_pred CCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCC
Q 042662 90 HNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLS 169 (690)
Q Consensus 90 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~ 169 (690)
++| .++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+..... ....+.
T Consensus 108 s~n-------------~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~ 168 (330)
T 1xku_A 108 SKN-------------QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQ 168 (330)
T ss_dssp CSS-------------CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB---CTTGGG
T ss_pred CCC-------------cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc---Chhhcc
Confidence 555 444 3444443 688999999999988777788899999999999988864210 015677
Q ss_pred CCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCE
Q 042662 170 NCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQL 249 (690)
Q Consensus 170 ~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 249 (690)
.+++|+.|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 169 ~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 169 GMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred CCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 88899999999998875 454443 38999999999999888888999999999999999999888888999999999
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccC------CCCCCeeeCCCCccCc---ccccccccCCCce
Q 042662 250 LSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGN------LTNLRKLYLGSNQLTS---IPSTLWNLKDILH 320 (690)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~---~p~~~~~~~~L~~ 320 (690)
|++++|.++ .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++++|.+.. .|..+..+.+++.
T Consensus 245 L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 999999998 77888899999999999999999877776643 3788999999998875 3456777889999
Q ss_pred eeccCCc
Q 042662 321 LNLSSNS 327 (690)
Q Consensus 321 L~L~~n~ 327 (690)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 9999884
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.3e-30 Score=268.08 Aligned_cols=265 Identities=25% Similarity=0.289 Sum_probs=136.4
Q ss_pred CCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCE
Q 042662 97 LEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176 (690)
Q Consensus 97 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~ 176 (690)
|+.|++++|.+.+..|..+.++++|++|++++|.+++..|..|+++++|++|++++|.+.... ..+. ++|
T Consensus 56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~------~~~~--~~L-- 125 (332)
T 2ft3_A 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP------PNLP--SSL-- 125 (332)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCC------SSCC--TTC--
T ss_pred CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccC------cccc--ccC--
Confidence 444444444444444445555666666666666666555666666666666666666555332 1111 334
Q ss_pred EEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCc--ccchhhhcCCCCCCEEeCcC
Q 042662 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLN--GSIPIALGKLKKLQLLSLED 254 (690)
Q Consensus 177 L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~L~~ 254 (690)
++|++++|++++..+..+..+++|+.|++++|.++ +..+..+..+ +|+.|++++
T Consensus 126 -----------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 126 -----------------------VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp -----------------------CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS
T ss_pred -----------------------CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC
Confidence 44444444444333333444444444444444443 2333444444 455555555
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLP 333 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~ 333 (690)
|.+++ +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+++++. .+..+++|+.|++++|+++ .+|
T Consensus 182 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 257 (332)
T 2ft3_A 182 AKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257 (332)
T ss_dssp SBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC
T ss_pred CCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC
Confidence 54443 232221 345555555555555444455555555555555555555332 4445555555555555554 444
Q ss_pred CCccCCcccceeeccccccccccCccccC------CCCCCeeeccCcccc--ccCCcccCCCCCCCEEECcCCc
Q 042662 334 LKIGNFNVLIQLDLSMNNFSGVIPTKIGG------LKDLQYLFLEYNRLQ--GSIPNSIGDLISLKSLNLSNNN 399 (690)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~ 399 (690)
..+..+++|++|++++|.+++..+..+.. .+.|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 258 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 45555555555555555555444444432 356777777777776 4566677777888888877764
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.7e-35 Score=316.97 Aligned_cols=387 Identities=19% Similarity=0.159 Sum_probs=203.7
Q ss_pred CCCCEEEccCCcCCccCCcc-ccCCCCCCEEECcCCcccc----cCCcccCCCCCCCeeecccCcCcccCCcccc-CCCC
Q 042662 10 AELQKLWLDNNSLTGTIPSS-IFNLSSLSSLDLSDNSLTG----EIPYEIGNLHNLEWMAFSFNKLVGVVPTAIF-NVST 83 (690)
Q Consensus 10 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~ 83 (690)
++|++|+|++|.++...... +..+++|++|+|++|.+++ .++..+..+++|++|++++|.+....+..+. .++.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888887544333 6778888888888888764 3456677788888888888887654443332 2221
Q ss_pred CCEEecCCCCCCCCCEEeccCCccCc----cCCccccCCCCCCeEecccCcccccCCcccc-----CCCCCCEEEccCCc
Q 042662 84 LKSLYLHNVRLPNLEELLLWGNNFSG----TIPSFIFNASKLFTLGLEENSFSGFIPNTFG-----SLRNLEWLSLNDNY 154 (690)
Q Consensus 84 L~~L~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~ 154 (690)
..++|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.
T Consensus 83 ---------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 83 ---------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp ---------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ---------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 01135566666666553 3456666777777777777776644333222 24456666666666
Q ss_pred CCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhc----cccCcEEEeecCccccc----CcccccCCCCCCEE
Q 042662 155 LTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNL----SQSMEDFQMHNCNISGS----IPEEISNLTNLIAI 226 (690)
Q Consensus 155 l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L 226 (690)
+...... .....+..+++|+.|++++|.+++..+..+... ..+|++|++++|.+++. ++..+..+++|++|
T Consensus 154 l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 154 LSAASCE-PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp CBGGGHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred CCHHHHH-HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 5542200 000223344555555555555544333333220 11455555555544432 23334444444444
Q ss_pred ECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCccc----CcccccCCCCCCeeeCCC
Q 042662 227 YLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGF----IPACSGNLTNLRKLYLGS 302 (690)
Q Consensus 227 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~ 302 (690)
++++|.++......+. +..+..+++|++|++++|.++.. ++..+..+++|+.|++++
T Consensus 233 ~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp ECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred eccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 4444444332111000 11112344555555555544432 233344445555555555
Q ss_pred CccCcc-ccccc-----ccCCCceeeccCCcccCC----CCCCccCCcccceeeccccccccccCccccC-----CCCCC
Q 042662 303 NQLTSI-PSTLW-----NLKDILHLNLSSNSFTGP----LPLKIGNFNVLIQLDLSMNNFSGVIPTKIGG-----LKDLQ 367 (690)
Q Consensus 303 n~l~~~-p~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~ 367 (690)
|.++.. +..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 554431 11111 113555555555555533 2334444566666666666665443333221 45677
Q ss_pred eeeccCccccc----cCCcccCCCCCCCEEECcCCcCcccCChhhh-----cCCCCCEEEcCCCcCc
Q 042662 368 YLFLEYNRLQG----SIPNSIGDLISLKSLNLSNNNLSGTIPISLE-----KLLDLKEINVSFNNLE 425 (690)
Q Consensus 368 ~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~l~ls~n~l~ 425 (690)
+|++++|++++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+.
T Consensus 374 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 77777777764 5566666677777777777777654222111 1235667776666554
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.1e-33 Score=306.37 Aligned_cols=352 Identities=20% Similarity=0.234 Sum_probs=237.7
Q ss_pred CCCCEEECcCCcccccCCcc-cCCCCCCCeeecccCcCccc----CCccccCCCCCCEEecCCCCCCCCCEEeccCCccC
Q 042662 34 SSLSSLDLSDNSLTGEIPYE-IGNLHNLEWMAFSFNKLVGV----VPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFS 108 (690)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~ 108 (690)
++|++|+|++|.++...... +..+++|++|++++|.++.. ++..+..+++ |++|++++|.+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~-------------L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA-------------LAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-------------CCEEECTTCCCH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCC-------------cCEEeCCCCcCC
Confidence 45677777777765433222 56677777777777776532 3344444444 333333333333
Q ss_pred ccCCcccc-CCC----CCCeEecccCcccc----cCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEc
Q 042662 109 GTIPSFIF-NAS----KLFTLGLEENSFSG----FIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGF 179 (690)
Q Consensus 109 ~~~p~~l~-~l~----~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l 179 (690)
+..+..+. .+. +|++|++++|.++. .++..+.++++|++|++++|.+
T Consensus 70 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i------------------------ 125 (461)
T 1z7x_W 70 DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL------------------------ 125 (461)
T ss_dssp HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC------------------------
T ss_pred hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC------------------------
Confidence 22222121 122 45556666555552 2344455555555555555544
Q ss_pred cCCcCCCCCChhhhhc----cccCcEEEeecCccccc----CcccccCCCCCCEEECCCCcCcccchhhhc-----CCCC
Q 042662 180 YNNPLGGILPRAIGNL----SQSMEDFQMHNCNISGS----IPEEISNLTNLIAIYLGRNKLNGSIPIALG-----KLKK 246 (690)
Q Consensus 180 ~~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~ 246 (690)
++..+..+... ..+|++|++++|++++. ++..+..+++|+.|++++|.++...+..+. ..++
T Consensus 126 -----~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 200 (461)
T 1z7x_W 126 -----GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200 (461)
T ss_dssp -----HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCC
T ss_pred -----chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCC
Confidence 33333332221 11477777777766653 345566678888888888887765444443 3568
Q ss_pred CCEEeCcCCcCccc----CCccccCCCCCCEEEeeCCcCcccC-----cccccCCCCCCeeeCCCCccCc-----ccccc
Q 042662 247 LQLLSLEDNQLEGS----IPDNLCGLAALFQLDLGGNKLCGFI-----PACSGNLTNLRKLYLGSNQLTS-----IPSTL 312 (690)
Q Consensus 247 L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~-----~p~~~ 312 (690)
|++|++++|.+++. ++..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|.++. ++..+
T Consensus 201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 280 (461)
T 1z7x_W 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVL 280 (461)
T ss_dssp CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHH
T ss_pred ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHH
Confidence 88888888888763 4666777889999999999887542 3334468999999999999998 67777
Q ss_pred cccCCCceeeccCCcccCCCCCCccC-----Ccccceeeccccccccc----cCccccCCCCCCeeeccCccccccCCcc
Q 042662 313 WNLKDILHLNLSSNSFTGPLPLKIGN-----FNVLIQLDLSMNNFSGV----IPTKIGGLKDLQYLFLEYNRLQGSIPNS 383 (690)
Q Consensus 313 ~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 383 (690)
..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 88999999999999987543333332 36999999999999875 4566778899999999999998655444
Q ss_pred cCC-----CCCCCEEECcCCcCcc----cCChhhhcCCCCCEEEcCCCcCccc
Q 042662 384 IGD-----LISLKSLNLSNNNLSG----TIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 384 l~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
+.. .++|++|++++|.+++ .+|..+..+++|+.|++++|++++.
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 432 6799999999999996 7888899999999999999998753
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=6.5e-31 Score=296.13 Aligned_cols=410 Identities=15% Similarity=0.085 Sum_probs=268.7
Q ss_pred cCCCCCCCEEEccCCcC---CccCCcccc------------CCCCCCEEECcCCcccccCCcccCCC--CCCCeeecccC
Q 042662 6 LGNLAELQKLWLDNNSL---TGTIPSSIF------------NLSSLSSLDLSDNSLTGEIPYEIGNL--HNLEWMAFSFN 68 (690)
Q Consensus 6 ~~~l~~L~~L~Ls~n~l---~~~~~~~~~------------~l~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~n 68 (690)
+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.. .+|++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 45688899999988642 134443333 68899999999998876666666653 34999999988
Q ss_pred c-Ccc-cCCccccCCCCCCEEecCCCC---------------CCCCCEEeccCCccC----ccCCccccCCCCCCeEecc
Q 042662 69 K-LVG-VVPTAIFNVSTLKSLYLHNVR---------------LPNLEELLLWGNNFS----GTIPSFIFNASKLFTLGLE 127 (690)
Q Consensus 69 ~-l~~-~~p~~l~~l~~L~~L~l~~~~---------------l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~ 127 (690)
. ++. .++....++++|++|++++|. +++|++|++++|.++ +.++..+.++++|++|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 221 122233478899999998883 478888888888886 2344445677888889888
Q ss_pred cCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecC
Q 042662 128 ENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNC 207 (690)
Q Consensus 128 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 207 (690)
+|.+.+ ++..+.++++|++|+++......... +....+..+++|+.++++++ ..+.+|..+..++ +|++|++++|
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~-~L~~L~Ls~~ 303 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP--EKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA-QIRKLDLLYA 303 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT--TSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG-GCCEEEETTC
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccchH--HHHHHhhccccccccCcccc-chhHHHHHHhhcC-CCcEEecCCC
Confidence 888876 56778888888888887633221111 22256777888888888775 2345566666665 8888888888
Q ss_pred cccccCc-ccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcC-----------CcCccc-CCccccCCCCCCEE
Q 042662 208 NISGSIP-EEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLED-----------NQLEGS-IPDNLCGLAALFQL 274 (690)
Q Consensus 208 ~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~-----------n~l~~~-~~~~~~~l~~L~~L 274 (690)
.+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++ |.+++. ++..+..+++|++|
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L 383 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred cCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence 8765433 3457788888888884333333444456778888888883 455433 22224457888888
Q ss_pred EeeCCcCcccCcccccC-CCCCCeeeCC----CCccCccc------ccccccCCCceeeccCCc--ccCCCCCCcc-CCc
Q 042662 275 DLGGNKLCGFIPACSGN-LTNLRKLYLG----SNQLTSIP------STLWNLKDILHLNLSSNS--FTGPLPLKIG-NFN 340 (690)
Q Consensus 275 ~L~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~p------~~~~~~~~L~~L~L~~n~--l~~~~~~~~~-~l~ 340 (690)
+++.|.+++..+..++. +++|+.|+++ .|.+++.| ..+..+++|+.|+++.|. +++..+..+. .++
T Consensus 384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 88888887766555554 7788888885 56676543 235557778888886543 4433333332 366
Q ss_pred ccceeeccccccccc-cCccccCCCCCCeeeccCcccccc-CCcccCCCCCCCEEECcCCcCcccCChhh-hcCCCCCEE
Q 042662 341 VLIQLDLSMNNFSGV-IPTKIGGLKDLQYLFLEYNRLQGS-IPNSIGDLISLKSLNLSNNNLSGTIPISL-EKLLDLKEI 417 (690)
Q Consensus 341 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~l 417 (690)
+|++|++++|.+++. ++..+.++++|++|+|++|.+++. ++..+..+++|++|++++|++++.....+ ..++.+...
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 777777777777652 344456677777777777776543 23334556777777777777765432222 234555444
Q ss_pred EcC
Q 042662 418 NVS 420 (690)
Q Consensus 418 ~ls 420 (690)
.+.
T Consensus 544 ~~~ 546 (592)
T 3ogk_B 544 LIP 546 (592)
T ss_dssp EEC
T ss_pred Eec
Confidence 443
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.1e-31 Score=297.77 Aligned_cols=393 Identities=14% Similarity=0.094 Sum_probs=295.1
Q ss_pred CCccccCCCCCCEEECcCCcc---cccCCcccC------------CCCCCCeeecccCcCcccCCccccCC--CCCCEEe
Q 042662 26 IPSSIFNLSSLSSLDLSDNSL---TGEIPYEIG------------NLHNLEWMAFSFNKLVGVVPTAIFNV--STLKSLY 88 (690)
Q Consensus 26 ~~~~~~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~ 88 (690)
++..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 344466789999999988642 234454444 78999999999999887766667663 4499999
Q ss_pred cCCC-------------CCCCCCEEeccCCccCcc----CCccccCCCCCCeEecccCcccc----cCCccccCCCCCCE
Q 042662 89 LHNV-------------RLPNLEELLLWGNNFSGT----IPSFIFNASKLFTLGLEENSFSG----FIPNTFGSLRNLEW 147 (690)
Q Consensus 89 l~~~-------------~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~ 147 (690)
+++| .+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 9887 468999999999988765 33345678999999999999873 34455678899999
Q ss_pred EEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCC---CCCChhhhhccccCcEEEeecCcccccCcccccCCCCCC
Q 042662 148 LSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLG---GILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLI 224 (690)
Q Consensus 148 L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~---~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 224 (690)
|++++|.+.+.. ..+..+++|+.|+++..... +..+..+..+. +|+.|+++++. .+.+|..+..+++|+
T Consensus 225 L~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 225 VKVGDFEILELV------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMG-PNEMPILFPFAAQIR 296 (592)
T ss_dssp EECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCC-TTTGGGGGGGGGGCC
T ss_pred EeccCccHHHHH------HHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccc-hhHHHHHHhhcCCCc
Confidence 999999887643 55777899999999864322 23344555565 89999998864 346777888899999
Q ss_pred EEECCCCcCcccch-hhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee-----------CCcCccc-CcccccC
Q 042662 225 AIYLGRNKLNGSIP-IALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG-----------GNKLCGF-IPACSGN 291 (690)
Q Consensus 225 ~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-----------~n~l~~~-~~~~~~~ 291 (690)
+|++++|.+++... ..+..+++|+.|+++++...+.++..+..+++|++|+++ .|.+++. ++.....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999999875544 446889999999999443333444555678999999999 3566543 2233456
Q ss_pred CCCCCeeeCCCCccCc-ccccccc-cCCCceeecc----CCcccCC-----CCCCccCCcccceeeccccc--cccccCc
Q 042662 292 LTNLRKLYLGSNQLTS-IPSTLWN-LKDILHLNLS----SNSFTGP-----LPLKIGNFNVLIQLDLSMNN--FSGVIPT 358 (690)
Q Consensus 292 l~~L~~L~L~~n~l~~-~p~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~ 358 (690)
+++|+.|+++.|.+++ .+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 8999999998888887 4444444 8899999996 5667653 33336678999999997543 6655554
Q ss_pred ccc-CCCCCCeeeccCccccc-cCCcccCCCCCCCEEECcCCcCccc-CChhhhcCCCCCEEEcCCCcCcc
Q 042662 359 KIG-GLKDLQYLFLEYNRLQG-SIPNSIGDLISLKSLNLSNNNLSGT-IPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 359 ~~~-~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
.+. .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|+.|++++|+++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 444 48899999999999876 3455567889999999999998755 44455678999999999999764
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.8e-28 Score=249.52 Aligned_cols=224 Identities=21% Similarity=0.279 Sum_probs=174.9
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
.++.|++++|+++ .+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5666666666666 55666666667777777777666 56666666677777777777666 556666667777777777
Q ss_pred CCcCcccCccccc---------CCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeecc
Q 042662 278 GNKLCGFIPACSG---------NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLS 348 (690)
Q Consensus 278 ~n~l~~~~~~~~~---------~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 348 (690)
+|.+.+.+|..+. .+++|+.|++++|+++.+|..+..+++|+.|++++|.+++ +|..+..+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 7666666665554 3788888888888888888888888888888888888884 55578888888888888
Q ss_pred ccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCc
Q 042662 349 MNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLE 425 (690)
Q Consensus 349 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 425 (690)
+|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 88888888888888899999999998888888888888999999999999999899999999999999988876554
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=9.2e-28 Score=248.53 Aligned_cols=224 Identities=21% Similarity=0.278 Sum_probs=172.8
Q ss_pred CCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeC
Q 042662 173 YLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSL 252 (690)
Q Consensus 173 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 252 (690)
.++.|++++|.++ .+|..++.+. +|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444444 3444444444 5555566555555 55555556666666666666665 45555666666666666
Q ss_pred cCCcCcccCCccc---------cCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeec
Q 042662 253 EDNQLEGSIPDNL---------CGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNL 323 (690)
Q Consensus 253 ~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L 323 (690)
++|.+.+.+|..+ .++++|+.|++++|.++ .+|..++.+++|+.|++++|.++++|..+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 6665555555544 34889999999999988 6777888899999999999999998888889999999999
Q ss_pred cCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCc
Q 042662 324 SSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 324 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 401 (690)
++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.+++..+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877655
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.3e-27 Score=241.67 Aligned_cols=230 Identities=22% Similarity=0.212 Sum_probs=155.9
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCccc--chhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEE
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGS--IPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLD 275 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 275 (690)
+|++|++++|+++...+..+..+++|+.|++++|.++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 566666666666543333456666666666666666522 2455556666777777776666 3455566667777777
Q ss_pred eeCCcCcccCc-ccccCCCCCCeeeCCCCccCc-ccccccccCCCceeeccCCcccC-CCCCCccCCcccceeecccccc
Q 042662 276 LGGNKLCGFIP-ACSGNLTNLRKLYLGSNQLTS-IPSTLWNLKDILHLNLSSNSFTG-PLPLKIGNFNVLIQLDLSMNNF 352 (690)
Q Consensus 276 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~p~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l 352 (690)
+++|.+.+..+ ..+..+++|+.|++++|.+.. .+..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77776665544 456666777777777776666 34456666777777777777765 4666677777777777777777
Q ss_pred ccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEcCCCcCcccC
Q 042662 353 SGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLL-DLKEINVSFNNLEGEI 428 (690)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~l~ls~n~l~~~~ 428 (690)
++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..|..+..++ +|+.|++++|++++..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 776677777777777777777777766666777777788888888887777777777774 7788888888777643
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=250.23 Aligned_cols=222 Identities=18% Similarity=0.214 Sum_probs=142.9
Q ss_pred CccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCc-
Q 042662 105 NNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP- 183 (690)
Q Consensus 105 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~- 183 (690)
|.+++..|..+.++++|++|++++|++++..+..|+++++|++|++++|.+..... ...+..+++|+.|++++|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 86 NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE----TSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSS
T ss_pred CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc----hhhhccCCCCcEEECCCCcc
Confidence 33333333444445555555555555554333335555555555555555543320 0134455555555555552
Q ss_pred CCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCc
Q 042662 184 LGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPD 263 (690)
Q Consensus 184 l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 263 (690)
+.+..+..+..+. +|++|++++|++++..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+++..+.
T Consensus 162 ~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 162 FTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp CCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred ccccCHHHccCCC-CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 4444445555555 777777777777777777777788888888888877654444455677888888888887765444
Q ss_pred ccc---CCCCCCEEEeeCCcCcc----cCcccccCCCCCCeeeCCCCccCcccccc-cccCCCceeeccCCcccCC
Q 042662 264 NLC---GLAALFQLDLGGNKLCG----FIPACSGNLTNLRKLYLGSNQLTSIPSTL-WNLKDILHLNLSSNSFTGP 331 (690)
Q Consensus 264 ~~~---~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~p~~~-~~~~~L~~L~L~~n~l~~~ 331 (690)
.+. ..+.++.++++++.+.+ .+|..+..+++|+.|++++|+++.+|..+ ..+++|+.|++++|.+.+.
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 332 35678888888888876 35677888899999999999999888764 7889999999999988753
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.9e-28 Score=251.64 Aligned_cols=281 Identities=17% Similarity=0.217 Sum_probs=172.0
Q ss_pred CCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccc
Q 042662 118 ASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQ 197 (690)
Q Consensus 118 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 197 (690)
++.....+.+++.++. +|..+. ++|++|++++|.+.+..+ ..+.++++|+.|++++|.+++..|..+..+.
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 100 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFSSLG- 100 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTTTCT-
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhhcCCCC-
Confidence 3444557777777774 455443 478888888887776541 3566777777777777777766666666665
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccch-hhhcCCCCCCEEeCcCC-cCcccCCccccCCCCCCEEE
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIP-IALGKLKKLQLLSLEDN-QLEGSIPDNLCGLAALFQLD 275 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 275 (690)
+|++|++++|++++..+..++.+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..|..+++|+.|+
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 67777777777765544446677777777777777764333 35666777777777776 35544455666677777777
Q ss_pred eeCCcCcccCcccccCCCCCCeeeCCCCccCcccccc-cccCCCceeeccCCcccCCCCCCccCCcccceeecccccccc
Q 042662 276 LGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL-WNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG 354 (690)
Q Consensus 276 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 354 (690)
+++|.+.+..|..+..+++|+.|++++|.+..+|..+ ..+++|+.|++++|.+++..+..+..
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------- 244 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------- 244 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc----------------
Confidence 7777777666666666777777777777766655433 23566666666666665433322211
Q ss_pred ccCccccCCCCCCeeeccCccccc----cCCcccCCCCCCCEEECcCCcCcccCChh-hhcCCCCCEEEcCCCcCcccCC
Q 042662 355 VIPTKIGGLKDLQYLFLEYNRLQG----SIPNSIGDLISLKSLNLSNNNLSGTIPIS-LEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~l~ls~n~l~~~~p 429 (690)
......++.++++++.+++ .+|..+..+++|+.|++++|+++. +|.. +..+++|+.|++++|++.|.+|
T Consensus 245 -----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 -----GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred -----ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1122334444444444443 244555666666666666666663 3333 4566666666666666665544
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.7e-27 Score=243.14 Aligned_cols=251 Identities=20% Similarity=0.238 Sum_probs=160.8
Q ss_pred CeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcE
Q 042662 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMED 201 (690)
Q Consensus 122 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 201 (690)
+.++.+++.++. +|..+. ++|++|++++|.+..... ..+.++++|+.|++++|.++..
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~-------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFK-------------- 67 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEE--------------
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcc--------------
Confidence 456666666653 344332 466666776666654321 2245555555555555554421
Q ss_pred EEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEEeeCCc
Q 042662 202 FQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIP-DNLCGLAALFQLDLGGNK 280 (690)
Q Consensus 202 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 280 (690)
+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 68 ---------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 68 ---------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 112333344555555555555554 234445555555555555555554333 345556666666666666
Q ss_pred CcccCcccccCCCCCCeeeCCCCccCc--ccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCc
Q 042662 281 LCGFIPACSGNLTNLRKLYLGSNQLTS--IPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPT 358 (690)
Q Consensus 281 l~~~~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 358 (690)
+.+..+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 666666666666666666666666665 566666677777777777777766677777777888888888888776666
Q ss_pred cccCCCCCCeeeccCccccccCCcccCCCC-CCCEEECcCCcCcccC
Q 042662 359 KIGGLKDLQYLFLEYNRLQGSIPNSIGDLI-SLKSLNLSNNNLSGTI 404 (690)
Q Consensus 359 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~ 404 (690)
.+..+++|+.|++++|++++..|..+..++ +|++|++++|.+++..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 778888899999999998888888888884 8999999999988654
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.5e-26 Score=251.11 Aligned_cols=230 Identities=25% Similarity=0.260 Sum_probs=158.0
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+++.|+|++|++++..|..|.++++|+.|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 56666666666666666666666777777777776666666666666777777777776665555556666777777777
Q ss_pred CCcCcccCcccccCCCCCCeeeCCC-CccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGS-NQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 355 (690)
+|.+....+..+..+++|+.|++++ |.+..++. .+..+++|+.|++++|++++. | .+..+++|++|++++|.+++.
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCccc
Confidence 7776666666666677777777766 34444543 455666777777777776643 3 456677777777777777777
Q ss_pred cCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 356 IPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 356 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
.|..|.++++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 77777777777777777777777777777777777777777777776666666777777777777777766543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=249.20 Aligned_cols=229 Identities=26% Similarity=0.287 Sum_probs=146.4
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+++.|+|++|++++..+..|.++++|+.|++++|.+++..+..|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 55666666666665555566666666666666666665555666666666666666666665544556666666666666
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCC-ccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSN-QLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGV 355 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 355 (690)
+|.+....+..+..+++|+.|++++| .+..++. .+..+++|+.|++++|+++ .+| .+..+++|++|+|++|.+++.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 66666555556666666666666663 3334443 4555666666666666665 333 355666677777777777666
Q ss_pred cCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccC
Q 042662 356 IPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEI 428 (690)
Q Consensus 356 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~ 428 (690)
.|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 6666667777777777777777666666777777777777777777666666666677777777777766543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.3e-26 Score=248.35 Aligned_cols=231 Identities=24% Similarity=0.226 Sum_probs=194.9
Q ss_pred CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEe
Q 042662 172 KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLS 251 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 251 (690)
++++.|++++|.+++..|..+..+. +|+.|++++|++++..+..|.++++|+.|++++|.+++..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4667777777777766667777766 788888888888877777888888888888888888877777788888888888
Q ss_pred CcCCcCcccCCccccCCCCCCEEEeeCC-cCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccC
Q 042662 252 LEDNQLEGSIPDNLCGLAALFQLDLGGN-KLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTG 330 (690)
Q Consensus 252 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~ 330 (690)
+++|.+....+..|..+++|+.|++++| .+....+..+..+++|+.|++++|+++++| .+..+++|+.|++++|.+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcc
Confidence 8888888766667888888999999884 555555557888999999999999999886 46778899999999999998
Q ss_pred CCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccC
Q 042662 331 PLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTI 404 (690)
Q Consensus 331 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 404 (690)
..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+....
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCC
Confidence 88999999999999999999999988999999999999999999999888888899999999999999887553
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.1e-26 Score=246.70 Aligned_cols=231 Identities=23% Similarity=0.208 Sum_probs=192.4
Q ss_pred CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEe
Q 042662 172 KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLS 251 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 251 (690)
++++.|++++|.+++..+..+..+. +|++|+|++|.+++..+..|.++++|+.|++++|.++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4566666666666666666666665 777778888877777777788888888888888888877677788888888888
Q ss_pred CcCCcCcccCCccccCCCCCCEEEeeCC-cCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccC
Q 042662 252 LEDNQLEGSIPDNLCGLAALFQLDLGGN-KLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTG 330 (690)
Q Consensus 252 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~ 330 (690)
+++|.+....+..|..+++|+.|++++| .+....+..|..+++|+.|++++|+++.+|. +..+++|+.|+|++|.+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCc
Confidence 8888888776777888888888888884 4554555578889999999999999998874 7788899999999999998
Q ss_pred CCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccC
Q 042662 331 PLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTI 404 (690)
Q Consensus 331 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 404 (690)
..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+....
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 88999999999999999999999988999999999999999999999888888899999999999999987543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.2e-27 Score=237.33 Aligned_cols=209 Identities=27% Similarity=0.286 Sum_probs=116.7
Q ss_pred CCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCc-CcccCcccccCCCCCCeee
Q 042662 221 TNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNK-LCGFIPACSGNLTNLRKLY 299 (690)
Q Consensus 221 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 299 (690)
++|+.|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554444455555555555555554 4444444455555555555
Q ss_pred CCCCccCcc-cccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccc
Q 042662 300 LGSNQLTSI-PSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQG 378 (690)
Q Consensus 300 L~~n~l~~~-p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 378 (690)
+++|.++++ |..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 555555553 3344445555555555555554444445555666666666666655444456666666666666666666
Q ss_pred cCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 379 SIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 379 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 666666666666666666666665555556666666666666666665443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.5e-26 Score=233.30 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=51.9
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|++|++++|++++..+..++.+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 44444444444443333334445555555555555544433344445555555555555544444444444555555555
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLT 306 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 306 (690)
+|.+++..+..+..+++|+.|++++|.+.
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55544444444444444444444444443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.6e-27 Score=243.78 Aligned_cols=246 Identities=21% Similarity=0.202 Sum_probs=180.5
Q ss_pred CCCCEEeccCCccCccCCccccCCCCCCeEecccCcc-cccCCcccc-------CCCCCCEEEccCCcCCCcCCCCCccc
Q 042662 95 PNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSF-SGFIPNTFG-------SLRNLEWLSLNDNYLTSSTPKLSFLS 166 (690)
Q Consensus 95 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~l~ 166 (690)
++|+.|++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|++++|.+.+..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~ 113 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP-----P 113 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC-----C
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH-----H
Confidence 4566777777777 566655443 77778888877 344555554 67888888888888776542 2
Q ss_pred CC--CCCCCCCEEEccCCcCCCCCChhhhhcc----ccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCccc--ch
Q 042662 167 SL--SNCKYLEYFGFYNNPLGGILPRAIGNLS----QSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGS--IP 238 (690)
Q Consensus 167 ~l--~~l~~L~~L~l~~n~l~~~~p~~~~~~~----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~p 238 (690)
.+ ..+++|++|++++|.+++. |..+..+. ++|++|++++|++++..|..++.+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 22 6778888888888888877 77777661 3899999999999888888899999999999999998765 33
Q ss_pred hhh--cCCCCCCEEeCcCCcCcc--cCC-ccccCCCCCCEEEeeCCcCcccCc-ccccCCCCCCeeeCCCCccCcccccc
Q 042662 239 IAL--GKLKKLQLLSLEDNQLEG--SIP-DNLCGLAALFQLDLGGNKLCGFIP-ACSGNLTNLRKLYLGSNQLTSIPSTL 312 (690)
Q Consensus 239 ~~l--~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~p~~~ 312 (690)
..+ ..+++|++|++++|.+++ .++ ..+..+++|+.|++++|.+++..| ..+..+++|+.|++++|+++.+|..+
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~ 272 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc
Confidence 444 788899999999998873 222 344677888888888888887664 44556788888888888888877766
Q ss_pred cccCCCceeeccCCcccCCCCCCccCCcccceeecccccccc
Q 042662 313 WNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSG 354 (690)
Q Consensus 313 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 354 (690)
. ++|+.|++++|++++. |. +..+++|++|++++|.+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 6777777777777755 44 6667777777777776654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=5.6e-28 Score=248.75 Aligned_cols=202 Identities=20% Similarity=0.227 Sum_probs=107.6
Q ss_pred CCCCCCEEECCCCcCcccchhhh--cCCCCCCEEeCcCCcCcccCCccccCC-----CCCCEEEeeCCcCcccCcccccC
Q 042662 219 NLTNLIAIYLGRNKLNGSIPIAL--GKLKKLQLLSLEDNQLEGSIPDNLCGL-----AALFQLDLGGNKLCGFIPACSGN 291 (690)
Q Consensus 219 ~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~ 291 (690)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 44555555555555554444443 4455555555555555544 4444433 45555555555555554455555
Q ss_pred CCCCCeeeCCCCccCc---ccccc--cccCCCceeeccCCcccC--CCC-CCccCCcccceeeccccccccccC-ccccC
Q 042662 292 LTNLRKLYLGSNQLTS---IPSTL--WNLKDILHLNLSSNSFTG--PLP-LKIGNFNVLIQLDLSMNNFSGVIP-TKIGG 362 (690)
Q Consensus 292 l~~L~~L~L~~n~l~~---~p~~~--~~~~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 362 (690)
+++|+.|++++|++.+ +|..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 5555555555555443 12222 445555555555555542 111 122344556666666666655443 33444
Q ss_pred CCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 363 LKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 363 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
+++|++|++++|+++ .+|..+. ++|++||+++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 566666666666666 5555554 5667777777776654 44 6666677777777776654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=246.16 Aligned_cols=239 Identities=22% Similarity=0.217 Sum_probs=142.8
Q ss_pred CCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhcc
Q 042662 117 NASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLS 196 (690)
Q Consensus 117 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 196 (690)
.+++|++|++++|.+++..|..|.++++|++|++++|.+.+.. .+..+++|++|++++|.+++..+ .+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~l~~L~~L~Ls~n~l~~l~~-----~~ 99 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------DLESLSTLRTLDLNNNYVQELLV-----GP 99 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-------EETTCTTCCEEECCSSEEEEEEE-----CT
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-------hhhhcCCCCEEECcCCccccccC-----CC
Confidence 3445555555555555554455555555555555555554432 14445555555555555443211 12
Q ss_pred ccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccc-cCCCCCCEEE
Q 042662 197 QSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNL-CGLAALFQLD 275 (690)
Q Consensus 197 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 275 (690)
+|++|++++|++++..+. .+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 100 -~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 100 -SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp -TCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred -CcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 566666666666654333 24566777777777766666666666777777777777666555544 3566677777
Q ss_pred eeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccc-c
Q 042662 276 LGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFS-G 354 (690)
Q Consensus 276 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~ 354 (690)
+++|.+++..+ ...+++|+.|++++|+++++|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +
T Consensus 176 L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 77776665522 22366777777777777776666666677777777777766 35555666666666666666666 5
Q ss_pred ccCccccCCCCCCeeeccCc
Q 042662 355 VIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 355 ~~~~~~~~l~~L~~L~L~~n 374 (690)
..|..+..++.|+.|++++|
T Consensus 253 ~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 253 TLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHhccccceEEECCCc
Confidence 55556666666666666633
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.1e-25 Score=243.57 Aligned_cols=187 Identities=26% Similarity=0.315 Sum_probs=125.1
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|+.|++++|++++ +|.. +++|++|++++|.+++. |. .+.+|+.|++++|.+++ +| ..+++|+.|+++
T Consensus 122 ~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls 189 (622)
T 3g06_A 122 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVS 189 (622)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECC
Confidence 56666666666653 3332 36667777777766642 32 23567777777777664 34 345677777777
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP 357 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 357 (690)
+|.+++. |. ..++|+.|++++|.++.+|.. +++|+.|++++|.+++ +| ..+++|+.|++++|.++. +|
T Consensus 190 ~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp 257 (622)
T 3g06_A 190 DNQLASL-PT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LP 257 (622)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCCCCC-CC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CC
Confidence 7777653 22 236777777777777777653 3667777777777774 44 345677788888887773 44
Q ss_pred ccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCC
Q 042662 358 TKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLL 412 (690)
Q Consensus 358 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 412 (690)
. .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4 4677888888888887 6677788888888888888888887777666544
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.1e-25 Score=244.58 Aligned_cols=143 Identities=24% Similarity=0.325 Sum_probs=74.4
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|+.|+++
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls 229 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVS 229 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECC
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEcc
Confidence 45555555555553 33 234556666666666553 222 1345566666666555 2332 13455566666
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP 357 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 357 (690)
+|.+++ +| ..+++|+.|++++|+++.+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++..|
T Consensus 230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 230 GNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 665554 22 233556666666666555554 3355555555555555 445455555555555555555555444
Q ss_pred ccc
Q 042662 358 TKI 360 (690)
Q Consensus 358 ~~~ 360 (690)
..+
T Consensus 302 ~~l 304 (622)
T 3g06_A 302 QAL 304 (622)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-27 Score=241.57 Aligned_cols=267 Identities=19% Similarity=0.159 Sum_probs=171.4
Q ss_pred CCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCccCCccc
Q 042662 36 LSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFI 115 (690)
Q Consensus 36 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~~l 115 (690)
++.++++.+.+....+..+..+++|++|++++|++++..|..|.++++|+ +|++++|.+++..| +
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-------------~L~Ls~n~l~~~~~--~ 76 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE-------------LLNLSSNVLYETLD--L 76 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCC-------------EEECTTSCCEEEEE--E
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCC-------------EEECCCCcCCcchh--h
Confidence 34455666665544444455566677777777777665555666555433 33333333333222 5
Q ss_pred cCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhc
Q 042662 116 FNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNL 195 (690)
Q Consensus 116 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 195 (690)
..+++|++|++++|.+++.. ..++|++|++++|.+.+.. +.. +
T Consensus 77 ~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~-----------------------------~~~---~ 119 (317)
T 3o53_A 77 ESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS-----------------------------CSR---G 119 (317)
T ss_dssp TTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE-----------------------------ECC---C
T ss_pred hhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcC-----------------------------ccc---c
Confidence 55666666666666665432 2255666666665554432 221 1
Q ss_pred cccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhc-CCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 042662 196 SQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALG-KLKKLQLLSLEDNQLEGSIPDNLCGLAALFQL 274 (690)
Q Consensus 196 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 274 (690)
. +|++|++++|++++..+..++.+++|+.|++++|.+++..+..+. .+++|++|++++|.+++. + ....+++|+.|
T Consensus 120 ~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L 196 (317)
T 3o53_A 120 Q-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (317)
T ss_dssp S-SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred C-CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence 2 566777777777666666667777777777777777766666553 677778888887777754 2 23347788888
Q ss_pred EeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCccc-CCCCCCccCCcccceeecccc-cc
Q 042662 275 DLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFT-GPLPLKIGNFNVLIQLDLSMN-NF 352 (690)
Q Consensus 275 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l 352 (690)
++++|.+++..+. +..+++|+.|++++|+++.+|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++++ .+
T Consensus 197 ~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 197 DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp ECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 8888888765443 77778888888888888888877777888888888888887 666777778888888888743 45
Q ss_pred ccccCc
Q 042662 353 SGVIPT 358 (690)
Q Consensus 353 ~~~~~~ 358 (690)
.+..|.
T Consensus 276 ~~~~~~ 281 (317)
T 3o53_A 276 TGQNEE 281 (317)
T ss_dssp HSSSSC
T ss_pred cCCchh
Confidence 555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.7e-26 Score=247.92 Aligned_cols=234 Identities=22% Similarity=0.228 Sum_probs=147.3
Q ss_pred CCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccC
Q 042662 120 KLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSM 199 (690)
Q Consensus 120 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L 199 (690)
+|++|+|++|.+++..|..|.++++|++|+|++|.+.+.. + +..+++|+.|++++|.+++..+. ++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~-l~~l~~L~~L~Ls~N~l~~l~~~------~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------D-LESLSTLRTLDLNNNYVQELLVG------PSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------E-CTTCTTCCEEECCSSEEEEEEEC------TTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------c-cccCCCCCEEEecCCcCCCCCCC------CCc
Confidence 5666666666666555555666666666666666555432 1 45555555555555555432211 266
Q ss_pred cEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCcccc-CCCCCCEEEeeC
Q 042662 200 EDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLC-GLAALFQLDLGG 278 (690)
Q Consensus 200 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~ 278 (690)
++|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 6677777666654443 346677777777777766666677777777777777777766666654 567777777777
Q ss_pred CcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccc-cccC
Q 042662 279 NKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFS-GVIP 357 (690)
Q Consensus 279 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 357 (690)
|.+++..+ ...+++|+.|+|++|.++++|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 77766533 234677777777777777766666667777777777777763 5555666666777777777665 4555
Q ss_pred ccccCCCCCCeeecc
Q 042662 358 TKIGGLKDLQYLFLE 372 (690)
Q Consensus 358 ~~~~~l~~L~~L~L~ 372 (690)
..+..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 556666666666554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=244.67 Aligned_cols=235 Identities=22% Similarity=0.185 Sum_probs=169.2
Q ss_pred CCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCC
Q 042662 96 NLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLE 175 (690)
Q Consensus 96 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~ 175 (690)
+|+.|+|++|.+++..|..+..+++|++|+|++|.+++..| |..+++|++|+|++|.+.+.. ..++|+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~L~ 102 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPSIE 102 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTTCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCCcC
Confidence 45555555555554444555555555555555555554433 555566666666666554432 125566
Q ss_pred EEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhc-CCCCCCEEeCcC
Q 042662 176 YFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALG-KLKKLQLLSLED 254 (690)
Q Consensus 176 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~ 254 (690)
.|++++|.+++..+.. ++ +|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|+|++
T Consensus 103 ~L~L~~N~l~~~~~~~---l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 103 TLHAANNNISRVSCSR---GQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp EEECCSSCCCCEEECC---CS-SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred EEECcCCcCCCCCccc---cC-CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 6666666665544432 22 688888888888887787888888888888888888887787775 788889999998
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCccc-CCCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFT-GPLP 333 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~-~~~~ 333 (690)
|.+++..+ +..+++|+.|+|++|.+++.+|. +..+++|+.|++++|.++++|..+..+++|+.|++++|.+. +.+|
T Consensus 179 N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 179 NFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp SCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred Cccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 88886632 34588899999999998876554 77889999999999999998888888899999999999987 6677
Q ss_pred CCccCCcccceeeccc
Q 042662 334 LKIGNFNVLIQLDLSM 349 (690)
Q Consensus 334 ~~~~~l~~L~~L~Ls~ 349 (690)
..+..++.|+.++++.
T Consensus 256 ~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQT 271 (487)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCCcEEeccc
Confidence 7788888888888763
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5e-28 Score=272.64 Aligned_cols=410 Identities=16% Similarity=0.157 Sum_probs=237.4
Q ss_pred cCCCCCCCEEEccCCcCCc---cCCcc------------ccCCCCCCEEECcCCcccccCCcccC-CCCCCCeeecccC-
Q 042662 6 LGNLAELQKLWLDNNSLTG---TIPSS------------IFNLSSLSSLDLSDNSLTGEIPYEIG-NLHNLEWMAFSFN- 68 (690)
Q Consensus 6 ~~~l~~L~~L~Ls~n~l~~---~~~~~------------~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n- 68 (690)
+.++++|++|+++++.... ..|.. ...+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 5678899999999976321 22221 34688999999999988876666665 6889999999998
Q ss_pred cCccc-CCccccCCCCCCEEecCCCC---------------CCCCCEEeccCCc--cCcc-CCccccCCCCCCeEecccC
Q 042662 69 KLVGV-VPTAIFNVSTLKSLYLHNVR---------------LPNLEELLLWGNN--FSGT-IPSFIFNASKLFTLGLEEN 129 (690)
Q Consensus 69 ~l~~~-~p~~l~~l~~L~~L~l~~~~---------------l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n 129 (690)
.++.. ++..+.++++|++|++++|. +++|++|++++|. +... ++..+.++++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 45432 33444578888888887762 3467777777765 2111 1111234577777777776
Q ss_pred -cccccCCccccCCCCCCEEEccCCcCCCcC---CCCCcccCCCCCCCCCEE-EccCCcCCCCCChhhhhccccCcEEEe
Q 042662 130 -SFSGFIPNTFGSLRNLEWLSLNDNYLTSST---PKLSFLSSLSNCKYLEYF-GFYNNPLGGILPRAIGNLSQSMEDFQM 204 (690)
Q Consensus 130 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~l~~l~~l~~L~~L-~l~~n~l~~~~p~~~~~~~~~L~~L~L 204 (690)
.+.+ ++..+.++++|++|+++.+...-.. ..++ ..+.++++|+.+ .+.... .+.++..+..++ +|++|++
T Consensus 222 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~--~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~-~L~~L~L 296 (594)
T 2p1m_B 222 VPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLS--VALSGCKELRCLSGFWDAV-PAYLPAVYSVCS-RLTTLNL 296 (594)
T ss_dssp SCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH--HHHHTCTTCCEEECCBTCC-GGGGGGGHHHHT-TCCEEEC
T ss_pred CcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHH--HHHhcCCCcccccCCcccc-hhhHHHHHHhhC-CCCEEEc
Confidence 3333 5666667777777776544210000 0001 245566677776 333222 123344444444 7777777
Q ss_pred ecCcccccC-cccccCCCCCCEEECCCCcCccc-chhhhcCCCCCCEEeCcC---------CcCcccCCccc-cCCCCCC
Q 042662 205 HNCNISGSI-PEEISNLTNLIAIYLGRNKLNGS-IPIALGKLKKLQLLSLED---------NQLEGSIPDNL-CGLAALF 272 (690)
Q Consensus 205 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~ 272 (690)
++|.+++.. +..+..+++|+.|++++| ++.. ++.....+++|+.|++.+ +.+++.....+ ..+++|+
T Consensus 297 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 297 SYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp TTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred cCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 777765432 223456777777777776 3322 222233467777777733 33433222222 2367777
Q ss_pred EEEeeCCcCcccCccccc-CCCCCCeeeCC--C----CccCccc------ccccccCCCceeeccCCcccCCCCCCccC-
Q 042662 273 QLDLGGNKLCGFIPACSG-NLTNLRKLYLG--S----NQLTSIP------STLWNLKDILHLNLSSNSFTGPLPLKIGN- 338 (690)
Q Consensus 273 ~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~p------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~- 338 (690)
.|.++.|.+++.....+. .+++|+.|+++ + +.++..| ..+..+++|+.|++++ .+++..+..+..
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 777777777655444443 46777777777 3 4555322 2244566777777765 444433333333
Q ss_pred CcccceeeccccccccccCccc-cCCCCCCeeeccCccccccCCc-ccCCCCCCCEEECcCCcCcccCChhh-hcCCCCC
Q 042662 339 FNVLIQLDLSMNNFSGVIPTKI-GGLKDLQYLFLEYNRLQGSIPN-SIGDLISLKSLNLSNNNLSGTIPISL-EKLLDLK 415 (690)
Q Consensus 339 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~ 415 (690)
+++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN 534 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence 6667777777777655444333 4567777777777776433322 23346677777777777654333333 3455554
Q ss_pred EEEcCCC
Q 042662 416 EINVSFN 422 (690)
Q Consensus 416 ~l~ls~n 422 (690)
...+..+
T Consensus 535 i~~~~~~ 541 (594)
T 2p1m_B 535 VEVIDER 541 (594)
T ss_dssp EEEECSS
T ss_pred EEEecCC
Confidence 4444433
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.8e-24 Score=216.11 Aligned_cols=208 Identities=25% Similarity=0.275 Sum_probs=128.0
Q ss_pred CCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCC
Q 042662 222 NLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLG 301 (690)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 301 (690)
+|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555555555555555555666665
Q ss_pred CCccCcccc-cccccCCCceeeccCCcccCC-CCCCccCCcccceeeccccccccccCccccCCCCCC----eeeccCcc
Q 042662 302 SNQLTSIPS-TLWNLKDILHLNLSSNSFTGP-LPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQ----YLFLEYNR 375 (690)
Q Consensus 302 ~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~ 375 (690)
+|.+.+++. .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 555555433 455555666666666665542 455666666666666666666665555555555555 67788888
Q ss_pred ccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCC
Q 042662 376 LQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPR 430 (690)
Q Consensus 376 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 430 (690)
+.+..+..+. ..+|+.|++++|.+++..+..+..+++|+.|++++|++.+.+|.
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 7755554443 34788888888888866666677788888888888888876654
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.6e-27 Score=268.42 Aligned_cols=401 Identities=17% Similarity=0.130 Sum_probs=218.4
Q ss_pred CEEEccCCcCCccCCccccCCCCCCEEECcCCccc---ccCCcc------------cCCCCCCCeeecccCcCcccCCcc
Q 042662 13 QKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLT---GEIPYE------------IGNLHNLEWMAFSFNKLVGVVPTA 77 (690)
Q Consensus 13 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~------------~~~l~~L~~L~L~~n~l~~~~p~~ 77 (690)
+.+++.++... .....+..+++|++|+|+++... +..|.. +..+++|++|+|++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555544322 12234567899999999998532 122221 246789999999999988776666
Q ss_pred cc-CCCCCCEEecCCC-------------CCCCCCEEeccCCccCccCCcccc----CCCCCCeEecccCc--cccc-CC
Q 042662 78 IF-NVSTLKSLYLHNV-------------RLPNLEELLLWGNNFSGTIPSFIF----NASKLFTLGLEENS--FSGF-IP 136 (690)
Q Consensus 78 l~-~l~~L~~L~l~~~-------------~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~~~-~~ 136 (690)
+. .+++|++|++++| .+++|++|++++|.+++..+..+. .+++|++|++++|. ++.. ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6788888877766 356666666666665544333332 44566666666664 2111 11
Q ss_pred ccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCc-------CCCCCChhhhhccccCcEE-EeecCc
Q 042662 137 NTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNP-------LGGILPRAIGNLSQSMEDF-QMHNCN 208 (690)
Q Consensus 137 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~-------l~~~~p~~~~~~~~~L~~L-~L~~n~ 208 (690)
..+.++++|++|++++|...+.. + ..+..+++|+.|++..+. +.+ ++..+..+. +|+.| .+.+..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l---~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~-~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKL---A--TLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCK-ELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHH---H--HHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCT-TCCEEECCBTCC
T ss_pred HHHHhCCCCcEEecCCCCcHHHH---H--HHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCC-CcccccCCcccc
Confidence 11234566666666665211111 1 334455666666654332 111 223444444 56665 232222
Q ss_pred ccccCcccccCCCCCCEEECCCCcCcccch-hhhcCCCCCCEEeCcCCcCcc-cCCccccCCCCCCEEEeeC--------
Q 042662 209 ISGSIPEEISNLTNLIAIYLGRNKLNGSIP-IALGKLKKLQLLSLEDNQLEG-SIPDNLCGLAALFQLDLGG-------- 278 (690)
Q Consensus 209 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~-------- 278 (690)
. +.++..+..+++|+.|++++|.+++... ..+..+++|+.|++++| +.. .++.....+++|+.|++++
T Consensus 278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 1 2344444456777777777777654322 22456677777777766 322 1222223466777777733
Q ss_pred -CcCcccCcccc-cCCCCCCeeeCCCCccCc-ccccc-cccCCCceeecc--C----CcccCC-----CCCCccCCcccc
Q 042662 279 -NKLCGFIPACS-GNLTNLRKLYLGSNQLTS-IPSTL-WNLKDILHLNLS--S----NSFTGP-----LPLKIGNFNVLI 343 (690)
Q Consensus 279 -n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~-~p~~~-~~~~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~ 343 (690)
+.+++.....+ ..+++|+.|.++.|.++. .+..+ ..+++|+.|+++ + +.+++. ++..+..+++|+
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCcc
Confidence 33333222222 235677777666666665 22222 245677777776 2 333311 111144566777
Q ss_pred eeeccccccccccCccccC-CCCCCeeeccCccccccCCccc-CCCCCCCEEECcCCcCcccCCh-hhhcCCCCCEEEcC
Q 042662 344 QLDLSMNNFSGVIPTKIGG-LKDLQYLFLEYNRLQGSIPNSI-GDLISLKSLNLSNNNLSGTIPI-SLEKLLDLKEINVS 420 (690)
Q Consensus 344 ~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~l~ls 420 (690)
.|++++ .+++..+..+.. +++|+.|+|++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|+++
T Consensus 436 ~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 436 RLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 777765 454444444433 6677777777777654433333 4567777777777777543332 23346677777777
Q ss_pred CCcC
Q 042662 421 FNNL 424 (690)
Q Consensus 421 ~n~l 424 (690)
+|++
T Consensus 515 ~~~~ 518 (594)
T 2p1m_B 515 SCSV 518 (594)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7765
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.3e-24 Score=213.66 Aligned_cols=207 Identities=23% Similarity=0.262 Sum_probs=174.0
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 68888888888887777678888888888888888887777788888888888888888887777788888888888888
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCc--ccccccccCCCceeeccCCcccCCCCCCccCCcccc----eeeccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTS--IPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLI----QLDLSMNN 351 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n~ 351 (690)
+|.+.+..+..++.+++|+.|++++|.+++ +|..+..+++|+.|++++|++++..+..+..++.|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 888888777778888899999999998887 677888888999999999998877777777777777 88999999
Q ss_pred cccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCC
Q 042662 352 FSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 405 (690)
+++..+..+. ..+|+.|++++|++++..+..+..+++|+.|++++|++++..+
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9876665554 4589999999999997777778999999999999999997654
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=4.9e-23 Score=208.98 Aligned_cols=205 Identities=25% Similarity=0.224 Sum_probs=157.5
Q ss_pred ccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCC
Q 042662 217 ISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLR 296 (690)
Q Consensus 217 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 296 (690)
+.++++++.+++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677777777777776 3444333 5777777777777766667777777777777777777765442 5678888
Q ss_pred eeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccc
Q 042662 297 KLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRL 376 (690)
Q Consensus 297 ~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 376 (690)
.|++++|+++.+|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|+.|+|++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888887777788888888888888877777788888888888888888877677777888888888888888
Q ss_pred cccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 377 QGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 377 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
++..+..+..+++|+.|++++|+++ .+|..+....+|+.+++++|++.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 8666666778888888888888888 6677777777888888888887654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.2e-22 Score=204.24 Aligned_cols=204 Identities=24% Similarity=0.287 Sum_probs=128.0
Q ss_pred CCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCC
Q 042662 223 LIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGS 302 (690)
Q Consensus 223 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 302 (690)
.+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3445555555442 333222 3455555555555544444555555555555555555544444455556666666666
Q ss_pred CccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCC
Q 042662 303 NQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP 381 (690)
Q Consensus 303 n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 381 (690)
|.++.+|. .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66665443 34455666666666666665555566667777777777777766555556777777778888777776666
Q ss_pred cccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 382 NSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 382 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 667777888888888888876666667777788888888777765543
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.6e-22 Score=201.79 Aligned_cols=205 Identities=27% Similarity=0.290 Sum_probs=139.4
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
..+.+++++++++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3455555555555 3443332 456666666666665555566666666666666666665444455666666666666
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeecccccccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVI 356 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 356 (690)
+|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 666666655566666677777777777766543 3556677777777777777555555677778888888888887766
Q ss_pred CccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCC
Q 042662 357 PTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 357 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 405 (690)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6677888888888888888887666678888899999999998876543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=5.9e-23 Score=206.75 Aligned_cols=222 Identities=24% Similarity=0.284 Sum_probs=115.2
Q ss_pred CeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcE
Q 042662 122 FTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMED 201 (690)
Q Consensus 122 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~ 201 (690)
..+++..+.+... ..+..+++|+.|++++|.+... +.+..+++|+.|++++|.+++. ..+..+. +|++
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-~L~~ 89 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-------QGIQYLPNVRYLALGGNKLHDI--SALKELT-NLTY 89 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-------TTGGGCTTCCEEECTTSCCCCC--GGGTTCT-TCCE
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcccc-------cccccCCCCcEEECCCCCCCCc--hhhcCCC-CCCE
Confidence 3444444444432 2244555666666666655432 2344455555555555555432 2333443 5555
Q ss_pred EEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcC
Q 042662 202 FQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKL 281 (690)
Q Consensus 202 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 281 (690)
|++++|.+++..+..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 55555555544444455555566666666555555555555555555555555555554444455555555555555555
Q ss_pred cccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccc
Q 042662 282 CGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKI 360 (690)
Q Consensus 282 ~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 360 (690)
++..+..++.+++|+.|++++|++++++. .+..+++|+.|++++|.+.+. ++.|+.|+++.|.++|.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 55555555555555555555555555333 244455555555555554422 2344555555555555555544
Q ss_pred cC
Q 042662 361 GG 362 (690)
Q Consensus 361 ~~ 362 (690)
+.
T Consensus 243 ~~ 244 (272)
T 3rfs_A 243 GS 244 (272)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7.7e-23 Score=205.86 Aligned_cols=208 Identities=21% Similarity=0.227 Sum_probs=135.6
Q ss_pred CCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccc
Q 042662 118 ASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQ 197 (690)
Q Consensus 118 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~ 197 (690)
+++|+.|++++|.++.. ..+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..+..+..+.
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~- 109 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-------SALKELTNLTYLILTGNQLQSLPNGVFDKLT- 109 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT-
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCccChhHhcCCc-
Confidence 34444444444444321 2244444555555555444331 2344445555555555555544444445554
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|++|++++|++++..+..++.+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 66677777777766666666777777777777777776666667777788888888887776666667777888888888
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNV 341 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 341 (690)
+|.+++..+..+..+++|+.|++++|.+.+ .++.|+.+++..|.++|.+|..++.+..
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 888887777777778888888888887654 2456778888888888888887776544
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.2e-22 Score=202.07 Aligned_cols=207 Identities=26% Similarity=0.271 Sum_probs=183.1
Q ss_pred hhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCc
Q 042662 240 ALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDIL 319 (690)
Q Consensus 240 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~ 319 (690)
.++++++++.+++++|.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.++.++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3678899999999999998 5565543 7899999999999999899999999999999999999998765 7889999
Q ss_pred eeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCc
Q 042662 320 HLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNN 399 (690)
Q Consensus 320 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 399 (690)
.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999998 678888999999999999999998888889999999999999999998888888999999999999999
Q ss_pred CcccCChhhhcCCCCCEEEcCCCcCcccCCCCCCCCCCccccccCCCCCCCC
Q 042662 400 LSGTIPISLEKLLDLKEINVSFNNLEGEIPREGPFRNFSAESFKGNELLCGM 451 (690)
Q Consensus 400 l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 451 (690)
+++..+..+..+++|+.|++++|+++...+.......+..+.+.+|++.|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 9977777788999999999999999954333334456777888999998875
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=206.87 Aligned_cols=223 Identities=18% Similarity=0.222 Sum_probs=140.0
Q ss_pred CCCEEEccCCcCCCCCChh---hhhccccCcEEEeecCcccccCcccc--cCCCCCCEEECCCCcCcccch----hhhcC
Q 042662 173 YLEYFGFYNNPLGGILPRA---IGNLSQSMEDFQMHNCNISGSIPEEI--SNLTNLIAIYLGRNKLNGSIP----IALGK 243 (690)
Q Consensus 173 ~L~~L~l~~n~l~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~ 243 (690)
.++.+.+.++.++...-.. +.... +|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3555555555544321111 11223 58888888888888888777 788888888888888876443 34456
Q ss_pred CCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCccc---C-cccccCCCCCCeeeCCCCccCccccc----cccc
Q 042662 244 LKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGF---I-PACSGNLTNLRKLYLGSNQLTSIPST----LWNL 315 (690)
Q Consensus 244 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~-~~~~~~l~~L~~L~L~~n~l~~~p~~----~~~~ 315 (690)
+++|++|++++|.+.+..+..|+.+++|++|+|++|++.+. . +..++.+++|++|++++|+++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 78888888888888777777788888888888888877652 1 23346677888888888887765442 3455
Q ss_pred CCCceeeccCCcccCCCCCCccCC---cccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCE
Q 042662 316 KDILHLNLSSNSFTGPLPLKIGNF---NVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKS 392 (690)
Q Consensus 316 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 392 (690)
++|++|++++|++++..|..+..+ ++|++|++++|.++ .+|..+. ++|+.|+|++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 677777777777766656555444 45555555555555 3344332 4555555555555432 21 344455555
Q ss_pred EECcCCcCc
Q 042662 393 LNLSNNNLS 401 (690)
Q Consensus 393 L~Ls~n~l~ 401 (690)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-23 Score=223.37 Aligned_cols=239 Identities=23% Similarity=0.254 Sum_probs=169.6
Q ss_pred CChhhhhccccCcEEEeecCcccccC----cccccCCCCCCEEECCCC---cCcccchhhh-------cCCCCCCEEeCc
Q 042662 188 LPRAIGNLSQSMEDFQMHNCNISGSI----PEEISNLTNLIAIYLGRN---KLNGSIPIAL-------GKLKKLQLLSLE 253 (690)
Q Consensus 188 ~p~~~~~~~~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 253 (690)
++..+..++ +|++|++++|++++.. +..+..+++|+.|++++| .+++.+|..+ ..+++|++|+|+
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 344455554 5666666666665542 233556777777777764 3444445444 567777777777
Q ss_pred CCcCcc----cCCccccCCCCCCEEEeeCCcCcccCcccc----cCC---------CCCCeeeCCCCccCc--cc---cc
Q 042662 254 DNQLEG----SIPDNLCGLAALFQLDLGGNKLCGFIPACS----GNL---------TNLRKLYLGSNQLTS--IP---ST 311 (690)
Q Consensus 254 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~l~~--~p---~~ 311 (690)
+|.+.+ .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|+.|++++|+++. ++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777776 356666777777777777777764433322 223 788888888888863 44 45
Q ss_pred ccccCCCceeeccCCccc--C---CCCCCccCCcccceeeccccccc----cccCccccCCCCCCeeeccCcccccc---
Q 042662 312 LWNLKDILHLNLSSNSFT--G---PLPLKIGNFNVLIQLDLSMNNFS----GVIPTKIGGLKDLQYLFLEYNRLQGS--- 379 (690)
Q Consensus 312 ~~~~~~L~~L~L~~n~l~--~---~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~--- 379 (690)
+..+++|+.|++++|+++ | ..+..+..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 667778888888888876 2 34447778888889999988886 56777788889999999999998765
Q ss_pred -CCccc--CCCCCCCEEECcCCcCcc----cCChhh-hcCCCCCEEEcCCCcCccc
Q 042662 380 -IPNSI--GDLISLKSLNLSNNNLSG----TIPISL-EKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 380 -~~~~l--~~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~l~ls~n~l~~~ 427 (690)
++..+ +.+++|++|+|++|.+++ .+|..+ .++++|+.|++++|++++.
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 45666 348999999999999997 477777 5689999999999988753
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=208.00 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=185.4
Q ss_pred cCcEEEeecCcccccCcc---cccCCCCCCEEECCCCcCcccchhhh--cCCCCCCEEeCcCCcCcccCC----ccccCC
Q 042662 198 SMEDFQMHNCNISGSIPE---EISNLTNLIAIYLGRNKLNGSIPIAL--GKLKKLQLLSLEDNQLEGSIP----DNLCGL 268 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~~----~~~~~l 268 (690)
.++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 578899988877542111 12235679999999999999999888 899999999999999997655 345578
Q ss_pred CCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCc---ccc--cccccCCCceeeccCCcccCCCCC----CccCC
Q 042662 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS---IPS--TLWNLKDILHLNLSSNSFTGPLPL----KIGNF 339 (690)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~p~--~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l 339 (690)
++|++|++++|.+.+..+..++.+++|++|++++|++.+ ++. .+..+++|++|++++|+++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 999999999999999999999999999999999999875 432 34678999999999999973 232 24678
Q ss_pred cccceeeccccccccccCccccCC---CCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCE
Q 042662 340 NVLIQLDLSMNNFSGVIPTKIGGL---KDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKE 416 (690)
Q Consensus 340 ~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 416 (690)
++|++|++++|.+++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.||+++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998888877776 69999999999999 6777664 7999999999999964 33 578899999
Q ss_pred EEcCCCcCcc
Q 042662 417 INVSFNNLEG 426 (690)
Q Consensus 417 l~ls~n~l~~ 426 (690)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999863
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=220.77 Aligned_cols=250 Identities=16% Similarity=0.164 Sum_probs=153.5
Q ss_pred EEccCCcCCCCCChhhhhccccCcEEEeecCcccccCc----ccccCCC-CCCEEECCCCcCcccchhhhcCC-----CC
Q 042662 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIP----EEISNLT-NLIAIYLGRNKLNGSIPIALGKL-----KK 246 (690)
Q Consensus 177 L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~ 246 (690)
+.++.|.+++.+|..+.... +|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPH-GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCT-TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCC-CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 44555666665555444433 57777777777665555 5556666 67777777777766655555543 67
Q ss_pred CCEEeCcCCcCcccCCcc----ccCC-CCCCEEEeeCCcCcccCcccc----cC-CCCCCeeeCCCCccCc-----cccc
Q 042662 247 LQLLSLEDNQLEGSIPDN----LCGL-AALFQLDLGGNKLCGFIPACS----GN-LTNLRKLYLGSNQLTS-----IPST 311 (690)
Q Consensus 247 L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~L~~n~l~~-----~p~~ 311 (690)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777766554443 2333 677777777777765544332 22 2477777777777763 3334
Q ss_pred ccccC-CCceeeccCCcccCCCCCCcc----CC-cccceeeccccccccc----cCccccC-CCCCCeeeccCccccccC
Q 042662 312 LWNLK-DILHLNLSSNSFTGPLPLKIG----NF-NVLIQLDLSMNNFSGV----IPTKIGG-LKDLQYLFLEYNRLQGSI 380 (690)
Q Consensus 312 ~~~~~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~ 380 (690)
+...+ +|+.|++++|++++..+..+. .+ ++|++|+|++|.+++. ++..+.. .++|++|+|++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44444 677777777777655543332 33 4777777777777652 3334443 347888888888777544
Q ss_pred C----cccCCCCCCCEEECcCCcCcccC-------ChhhhcCCCCCEEEcCCCcCccc
Q 042662 381 P----NSIGDLISLKSLNLSNNNLSGTI-------PISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 381 ~----~~l~~l~~L~~L~Ls~n~l~~~~-------p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.+|+++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 33456677888888888744332 23455666777788888877644
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.9e-22 Score=194.92 Aligned_cols=196 Identities=21% Similarity=0.237 Sum_probs=98.8
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCc-CcccchhhhcCCCCCCEEeCcC-CcCcccCCccccCCCCCCEEE
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNK-LNGSIPIALGKLKKLQLLSLED-NQLEGSIPDNLCGLAALFQLD 275 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~ 275 (690)
+|++|++++|++++..+..+..+++|+.|++++|. ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444444555555555555554 4433333444455555555544 444443334444444444444
Q ss_pred eeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCc---eeeccCC-cccCCCCCCccCCcccc-eeecccc
Q 042662 276 LGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDIL---HLNLSSN-SFTGPLPLKIGNFNVLI-QLDLSMN 350 (690)
Q Consensus 276 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n 350 (690)
+++ |.++++|. +..+++|+ .|++++| .+++..+..+..+++|+ +|++++|
T Consensus 112 l~~------------------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 112 IFN------------------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEE------------------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CCC------------------------CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 444 44444443 33444444 5555555 55444444455555555 5555555
Q ss_pred ccccccCccccCCCCCCeeeccCcc-ccccCCcccCCC-CCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCC
Q 042662 351 NFSGVIPTKIGGLKDLQYLFLEYNR-LQGSIPNSIGDL-ISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFN 422 (690)
Q Consensus 351 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n 422 (690)
.++...+..+.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 555222222333 556666666663 554445555666 6666666666666633 222 4555666666544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5e-23 Score=214.28 Aligned_cols=251 Identities=21% Similarity=0.227 Sum_probs=180.8
Q ss_pred CCEEEccCCcCCCCCChhhhhc-cccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCccc-chhhhcCCCCCCEEe
Q 042662 174 LEYFGFYNNPLGGILPRAIGNL-SQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGS-IPIALGKLKKLQLLS 251 (690)
Q Consensus 174 L~~L~l~~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ 251 (690)
++.++++++.+. +..+..+ ...++.|++++|.+.+..+. +..+++|+.|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 455666665554 2334443 12678888888887766554 45678888888888887765 777778888888888
Q ss_pred CcCCcCcccCCccccCCCCCCEEEeeCC-cCccc-CcccccCCCCCCeeeCCCC-ccCc--ccccccccC-CCceeeccC
Q 042662 252 LEDNQLEGSIPDNLCGLAALFQLDLGGN-KLCGF-IPACSGNLTNLRKLYLGSN-QLTS--IPSTLWNLK-DILHLNLSS 325 (690)
Q Consensus 252 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~--~p~~~~~~~-~L~~L~L~~ 325 (690)
+++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|+.|++++| .+++ ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888887777777778888888888888 56652 5556677888888888888 7776 566677788 888888888
Q ss_pred C--ccc-CCCCCCccCCcccceeeccccc-cccccCccccCCCCCCeeeccCcc-ccccCCcccCCCCCCCEEECcCCcC
Q 042662 326 N--SFT-GPLPLKIGNFNVLIQLDLSMNN-FSGVIPTKIGGLKDLQYLFLEYNR-LQGSIPNSIGDLISLKSLNLSNNNL 400 (690)
Q Consensus 326 n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~l 400 (690)
| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 454 4556666778888999998888 676777788888999999999985 22222225778999999999998 4
Q ss_pred cccCChhhhcCCCCCEEEcCCCcCcccCCCC
Q 042662 401 SGTIPISLEKLLDLKEINVSFNNLEGEIPRE 431 (690)
Q Consensus 401 ~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~~ 431 (690)
+...-..+. ..+..|++++|++++..|..
T Consensus 284 ~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 PDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 432222222 23556678999999877653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.3e-24 Score=225.52 Aligned_cols=252 Identities=20% Similarity=0.210 Sum_probs=154.9
Q ss_pred CCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCC---cCCCCCChhhhhccccCcEEEeecCcccc
Q 042662 135 IPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNN---PLGGILPRAIGNLSQSMEDFQMHNCNISG 211 (690)
Q Consensus 135 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n---~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 211 (690)
++..+..+++|++|+|++|.+...... .....+..+++|+.|++++| .+++.+|..+..+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~--------------- 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL--------------- 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHH-HHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH---------------
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHH-HHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH---------------
Confidence 456677788888888888877653210 00134666777777777774 33444454442110
Q ss_pred cCcccccCCCCCCEEECCCCcCcc----cchhhhcCCCCCCEEeCcCCcCcccCCccc----cCC---------CCCCEE
Q 042662 212 SIPEEISNLTNLIAIYLGRNKLNG----SIPIALGKLKKLQLLSLEDNQLEGSIPDNL----CGL---------AALFQL 274 (690)
Q Consensus 212 ~~p~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~----~~l---------~~L~~L 274 (690)
..+..+++|++|++++|.++. .+|..+..+++|++|+|++|.+++..+..+ ..+ ++|++|
T Consensus 88 ---~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 88 ---QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp ---HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred ---HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE
Confidence 122455555555555555554 344455555566666666655543222222 222 566666
Q ss_pred EeeCCcCc-ccCc---ccccCCCCCCeeeCCCCccCc------ccccccccCCCceeeccCCccc----CCCCCCccCCc
Q 042662 275 DLGGNKLC-GFIP---ACSGNLTNLRKLYLGSNQLTS------IPSTLWNLKDILHLNLSSNSFT----GPLPLKIGNFN 340 (690)
Q Consensus 275 ~L~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~------~p~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~ 340 (690)
++++|+++ +.++ ..+..+++|+.|++++|+++. +|..+..+++|+.|+|++|.++ +.+|..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 66666665 2233 344556667777777766662 2335566677777777777764 45566666777
Q ss_pred ccceeeccccccccc----cCccc--cCCCCCCeeeccCccccc----cCCccc-CCCCCCCEEECcCCcCcccCC
Q 042662 341 VLIQLDLSMNNFSGV----IPTKI--GGLKDLQYLFLEYNRLQG----SIPNSI-GDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 341 ~L~~L~Ls~n~l~~~----~~~~~--~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~p 405 (690)
+|++|+|++|.+++. ++..+ +.+++|+.|+|++|.+++ .+|..+ .++++|++|++++|.+++..+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 777777777777654 44555 337889999999998887 477766 568899999999999987664
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.6e-23 Score=217.45 Aligned_cols=253 Identities=16% Similarity=0.166 Sum_probs=119.3
Q ss_pred EeccCCccCccCCccccCCCCCCeEecccCcccccCC----ccccCCC-CCCEEEccCCcCCCcCCCCCcccCCCC----
Q 042662 100 LLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIP----NTFGSLR-NLEWLSLNDNYLTSSTPKLSFLSSLSN---- 170 (690)
Q Consensus 100 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~l~~l~~---- 170 (690)
+.++.|.+++.+|..+...++|++|++++|.+++..+ ..|.+++ +|++|+|++|.+..... ..+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~l~~ 77 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-----DELVQILAA 77 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-----HHHHHHHHT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-----HHHHHHHhc
Confidence 4566677776666665555667777777777766554 4555666 66666666666654321 11111
Q ss_pred C-CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCC-CCCCEEECCCCcCcccchhhhc----C-
Q 042662 171 C-KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNL-TNLIAIYLGRNKLNGSIPIALG----K- 243 (690)
Q Consensus 171 l-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~----~- 243 (690)
. ++|+.|++++|.+++..+..+... +..+ ++|+.|++++|.+++..+..+. .
T Consensus 78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~---------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 78 IPANVTSLNLSGNFLSYKSSDELVKT---------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp SCTTCCEEECCSSCGGGSCHHHHHHH---------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred cCCCccEEECcCCcCChHHHHHHHHH---------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 1 455555555555554444433322 1122 4444444444444433332221 2
Q ss_pred CCCCCEEeCcCCcCcccC----CccccCCC-CCCEEEeeCCcCcccCccc----ccCC-CCCCeeeCCCCccCc-----c
Q 042662 244 LKKLQLLSLEDNQLEGSI----PDNLCGLA-ALFQLDLGGNKLCGFIPAC----SGNL-TNLRKLYLGSNQLTS-----I 308 (690)
Q Consensus 244 l~~L~~L~L~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~-----~ 308 (690)
.++|++|++++|.+++.. +..+..++ +|++|+|++|.+++..+.. +..+ ++|+.|+|++|.++. +
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l 216 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL 216 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence 234555555555444321 12222332 4555555555544433322 2222 355555555555554 3
Q ss_pred cccccc-cCCCceeeccCCcccCCCC----CCccCCcccceeecccccccccc-------CccccCCCCCCeeeccCccc
Q 042662 309 PSTLWN-LKDILHLNLSSNSFTGPLP----LKIGNFNVLIQLDLSMNNFSGVI-------PTKIGGLKDLQYLFLEYNRL 376 (690)
Q Consensus 309 p~~~~~-~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L~~L~L~~n~l 376 (690)
+..+.. .++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+.. +..+..+++|+.|++++|++
T Consensus 217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence 333333 2355555555555543222 22234445555555555533221 22333444455555555554
Q ss_pred cc
Q 042662 377 QG 378 (690)
Q Consensus 377 ~~ 378 (690)
..
T Consensus 297 ~~ 298 (362)
T 3goz_A 297 HP 298 (362)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-22 Score=211.90 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=15.1
Q ss_pred CCCCeEecccCcccccCCccccCCCCCCEEEccCCc
Q 042662 119 SKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNY 154 (690)
Q Consensus 119 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 154 (690)
++++.|++++|.+++..+. +.++++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCC
Confidence 4444455544444443332 2234444444444443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.7e-21 Score=189.70 Aligned_cols=179 Identities=20% Similarity=0.171 Sum_probs=141.8
Q ss_pred CCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCc-ccccCcccccCCCCCCEEECCC-CcCcccchhhhcCCCCCCE
Q 042662 172 KYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCN-ISGSIPEEISNLTNLIAIYLGR-NKLNGSIPIALGKLKKLQL 249 (690)
Q Consensus 172 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~ 249 (690)
++|+.|++++|.+++..+..+..++ +|++|++++|+ ++...+..|..+++|+.|++++ |.+++..+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4899999999999988777888887 99999999997 8877777899999999999998 9999887888999999999
Q ss_pred EeCcCCcCcccCCccccCCCCCC---EEEeeCC-cCcccCcccccCCCCCC-eeeCCCCccCcccccccccCCCceeecc
Q 042662 250 LSLEDNQLEGSIPDNLCGLAALF---QLDLGGN-KLCGFIPACSGNLTNLR-KLYLGSNQLTSIPSTLWNLKDILHLNLS 324 (690)
Q Consensus 250 L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~p~~~~~~~~L~~L~L~ 324 (690)
|++++|.+++ +|. |..+++|+ .|++++| .+.+..+..|..+++|+ .|++++|+++.+|...+..++|+.|+++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 9999999986 665 88888888 9999999 88887777788888888 8888888888777654444556666666
Q ss_pred CCc-ccCCCCCCccCC-cccceeeccccccc
Q 042662 325 SNS-FTGPLPLKIGNF-NVLIQLDLSMNNFS 353 (690)
Q Consensus 325 ~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~ 353 (690)
+|. +++..+..+..+ ++|+.|++++|.++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 663 554334444444 44444444444444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=5.2e-21 Score=196.03 Aligned_cols=190 Identities=24% Similarity=0.391 Sum_probs=99.2
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|++|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+.|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 45555555555542 22 34455555555555555553322 45555555555555554432 134444555555555
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP 357 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 357 (690)
+|.+ ++++. +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+
T Consensus 116 ~n~l------------------------~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 116 STQI------------------------TDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp TSCC------------------------CCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCC------------------------CCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh
Confidence 5544 44432 4444445555555554443222 4445555555555555553322
Q ss_pred ccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 358 TKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 358 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
+..+++|+.|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 5555666666666666653322 5566666666666666665432 5666666666666666654
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=186.09 Aligned_cols=179 Identities=25% Similarity=0.298 Sum_probs=99.0
Q ss_pred CCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCC
Q 042662 222 NLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLG 301 (690)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 301 (690)
+.+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3456666666666 3444333 456666666666665555556666666666666666665555555556666666666
Q ss_pred CCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccC
Q 042662 302 SNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSI 380 (690)
Q Consensus 302 ~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 380 (690)
+|+++.+|. .+..+++|++|++++|+++ +..+..+..+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLK------------------------SLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCC------------------------CcChhHhccCCcccEEECcCCcCCccC
Confidence 665555442 3344455555555555544 433344445555555555555555444
Q ss_pred CcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 381 PNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 381 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44455555555555555555554444555555555555555555543
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.2e-20 Score=193.23 Aligned_cols=194 Identities=22% Similarity=0.367 Sum_probs=144.1
Q ss_pred CCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCC
Q 042662 168 LSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKL 247 (690)
Q Consensus 168 l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 247 (690)
...+++|+.|++++|.++. ++ .+..+. +|++|++++|.+++..+ +..+++|+.|++++|.+++. + .+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~-~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccC-CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCC
Confidence 4567899999999999886 34 577776 99999999999986544 89999999999999999864 3 68999999
Q ss_pred CEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCc
Q 042662 248 QLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNS 327 (690)
Q Consensus 248 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~ 327 (690)
++|++++|.+++. + .+..+++|+.|++++|.+++..+ ++.+++|+.|++++|.+++++. +..+++|+.|++++|.
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 9999999999864 3 38888999999999998886544 6777888888888887777655 6666666666666666
Q ss_pred ccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCc
Q 042662 328 FTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 328 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 401 (690)
+++..+ +. .+++|+.|++++|++++.. .+..+++|+.|++++|.++
T Consensus 185 l~~~~~--l~------------------------~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LA------------------------SLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GG------------------------GCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hc------------------------CCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 653322 33 4455555555555554332 2455556666666666555
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.4e-20 Score=185.29 Aligned_cols=179 Identities=27% Similarity=0.332 Sum_probs=141.7
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
..++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 6789999999998 5666554 689999999999999989899999999999999999999888889999999999999
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCccccc-ccccCCCceeeccCCcccCCCCCCccCCcccceeecccccccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPST-LWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVI 356 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 356 (690)
+|.+++..+..+..+++|+.|++++|+++++|.. +..+++|+.|++++|++++..+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------- 150 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA--------------------- 150 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------------------
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH---------------------
Confidence 9999998888999999999999999999997764 456667777777666666444434
Q ss_pred CccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCccc
Q 042662 357 PTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 357 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 403 (690)
+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 151 ---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 151 ---FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ---cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 44455555555555555545455555666666666666666554
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.4e-19 Score=198.86 Aligned_cols=188 Identities=27% Similarity=0.377 Sum_probs=123.0
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|+.|++++|++++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666664 44444 256666666666666 344 345666666676666665 454 443 66677777
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP 357 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 357 (690)
+|.+++ +|. .+++|+.|++++|.++++|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|.|+ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 776665 333 45667777777777776665 35667777777777765 454 44 67777777777776 445
Q ss_pred ccccCCCCC-------CeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCC
Q 042662 358 TKIGGLKDL-------QYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLL 412 (690)
Q Consensus 358 ~~~~~l~~L-------~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 412 (690)
. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 4 443 55 88888888887 5777777788888888888888888887776654
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.1e-19 Score=173.00 Aligned_cols=159 Identities=25% Similarity=0.261 Sum_probs=77.0
Q ss_pred CCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCC
Q 042662 222 NLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLG 301 (690)
Q Consensus 222 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 301 (690)
+|+.|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554444444455555555555555544433344445555555555555554444444455555555555
Q ss_pred CCccCccccc-ccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccC
Q 042662 302 SNQLTSIPST-LWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSI 380 (690)
Q Consensus 302 ~n~l~~~p~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 380 (690)
+|++++++.. +..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ .++.|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 5555544332 3444455555555555544333334445555555555554432 2334555555555555555
Q ss_pred CcccCCC
Q 042662 381 PNSIGDL 387 (690)
Q Consensus 381 ~~~l~~l 387 (690)
|..++.+
T Consensus 182 p~~~~~l 188 (208)
T 2o6s_A 182 RNSAGSV 188 (208)
T ss_dssp BCTTSSB
T ss_pred eccCccc
Confidence 5544443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-19 Score=187.50 Aligned_cols=241 Identities=17% Similarity=0.146 Sum_probs=125.9
Q ss_pred CEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCE-
Q 042662 98 EELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY- 176 (690)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~- 176 (690)
+.++.++++++ .+|..+ .+++++|+|++|+++.+.+.+|.++++|++|+|++|.+.+.++. ..|.+++++..
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTTCCEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh----hHhhcchhhhhh
Confidence 34555555555 455544 34666777777777655455667777777777777766543311 23445554443
Q ss_pred EEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCC-CcCcccchhhhcCCC-CCCEEeCcC
Q 042662 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGR-NKLNGSIPIALGKLK-KLQLLSLED 254 (690)
Q Consensus 177 L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~-~L~~L~L~~ 254 (690)
+.+..|.++...|..+..++ +|++|++++|+++...+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLP-NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSBCCCT-TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhhhhcc-ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 33344555544444455544 566666666655544444444444555555543 344443344444443 455666666
Q ss_pred CcCcccCCccccCCCCCCEEEeeC-CcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGG-NKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLP 333 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~ 333 (690)
|+++.. +.......+|+.+++++ |.+....+..|..+++|+.|++++|+++.+|... +.+|+.|.+.++.-...+|
T Consensus 164 N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 164 NGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp SCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC
T ss_pred ccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC
Confidence 666533 32223344566666653 4444444445566666666666666666665422 2344444444433333444
Q ss_pred CCccCCcccceeecccc
Q 042662 334 LKIGNFNVLIQLDLSMN 350 (690)
Q Consensus 334 ~~~~~l~~L~~L~Ls~n 350 (690)
.+..+++|+.++++++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 3455555555555543
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=5.4e-19 Score=184.57 Aligned_cols=220 Identities=19% Similarity=0.147 Sum_probs=101.2
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccch-hhhcCCCCCCE-EeCcCCcCcccCCccccCCCCCCEEE
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIP-IALGKLKKLQL-LSLEDNQLEGSIPDNLCGLAALFQLD 275 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ 275 (690)
++++|+|++|+++...+..|.++++|++|+|++|.+.+.+| .+|.+++++.+ +.+..|++....|..|..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 44445555555443333344455555555555555433332 23444444443 33334445444444455555555555
Q ss_pred eeCCcCcccCcccccCCCCCCeeeCCC-CccCcccc-ccccc-CCCceeeccCCcccCCCCCCccCCcccceeeccc-cc
Q 042662 276 LGGNKLCGFIPACSGNLTNLRKLYLGS-NQLTSIPS-TLWNL-KDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSM-NN 351 (690)
Q Consensus 276 L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~p~-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~ 351 (690)
+++|++....+..+....++..+++.+ +++..++. .+..+ ..++.|++++|+++. +|.......+|++|++++ |.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCc
Confidence 555555444444443444444444433 34444432 22222 234555555555542 333333344555555543 33
Q ss_pred cccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCC
Q 042662 352 FSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFN 422 (690)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n 422 (690)
++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 33222334555566666666666655332222 3344455544443333444 2555666666666543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.5e-19 Score=170.07 Aligned_cols=161 Identities=26% Similarity=0.307 Sum_probs=129.3
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 67778888887776666667788888888888888887666677888888888888888887666667888888888888
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCccccc-ccccCCCceeeccCCcccCCCCCCccCCcccceeecccccccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPST-LWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVI 356 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 356 (690)
+|.+++..+..+..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.+ .++.|++|+++.|.++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 8888877777788888888888888888886654 6778888999999887764 4567888999999999999
Q ss_pred CccccCCCC
Q 042662 357 PTKIGGLKD 365 (690)
Q Consensus 357 ~~~~~~l~~ 365 (690)
|..++.++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 988876654
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5e-19 Score=194.56 Aligned_cols=183 Identities=26% Similarity=0.294 Sum_probs=158.0
Q ss_pred CCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeC
Q 042662 221 TNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYL 300 (690)
Q Consensus 221 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 300 (690)
.+|+.|++++|.+++ +|..+ +++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999997 66655 379999999999999 667 457999999999999998 565 654 9999999
Q ss_pred CCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccC
Q 042662 301 GSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSI 380 (690)
Q Consensus 301 ~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 380 (690)
++|+++++|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|+|++|+++ .+
T Consensus 128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 9999999988 67999999999999986 665 57899999999999997 666 65 89999999999998 66
Q ss_pred CcccCCCCCC-------CEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCCC
Q 042662 381 PNSIGDLISL-------KSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIPR 430 (690)
Q Consensus 381 ~~~l~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p~ 430 (690)
|. +.. +| +.|+|++|.++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 66 654 77 99999999999 5788888899999999999999987664
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3e-18 Score=173.81 Aligned_cols=172 Identities=25% Similarity=0.323 Sum_probs=95.1
Q ss_pred cCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCe
Q 042662 218 SNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRK 297 (690)
Q Consensus 218 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 297 (690)
..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. + .+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCE
Confidence 3455666666666666533 2 35556666666666666654332 55555666666666555542 1 2455555555
Q ss_pred eeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcccc
Q 042662 298 LYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQ 377 (690)
Q Consensus 298 L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 377 (690)
|++++|++++++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 117 L~L~~n~i~~~~-------------------------~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 117 LSLEHNGISDIN-------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp EECTTSCCCCCG-------------------------GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EECCCCcCCCCh-------------------------hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 555555555542 334444455555555554433 34555566666666666665
Q ss_pred ccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 378 GSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 378 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
+..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 170 ~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 170 DIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 4433 56666666666666666643 2 25666666666666666653
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=2.4e-18 Score=191.30 Aligned_cols=189 Identities=26% Similarity=0.341 Sum_probs=96.6
Q ss_pred CEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEE
Q 042662 98 EELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYF 177 (690)
Q Consensus 98 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L 177 (690)
..+.+..+.+....+ +..+.+|+.|++++|.+... + .+..+++|+.|+|++|.+.+.. .+..+++|+.|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L 92 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-------PLTNLKNLGWL 92 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG-------GGGGCTTCCEE
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh-------hhccCCCCCEE
Confidence 334444444443322 34566666667766666543 2 4666666666666666665532 15555666666
Q ss_pred EccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcC
Q 042662 178 GFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQL 257 (690)
Q Consensus 178 ~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 257 (690)
+|++|.+.+. +.+..+. +|+.|+|++|++++. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+
T Consensus 93 ~Ls~N~l~~l--~~l~~l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 93 FLDENKIKDL--SSLKDLK-KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ECCSSCCCCC--TTSTTCT-TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred ECcCCCCCCC--hhhccCC-CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 6666655531 2344443 455555555555432 2344555555555555555533 3344555555555555555
Q ss_pred cccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcc
Q 042662 258 EGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSI 308 (690)
Q Consensus 258 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 308 (690)
.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+...
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 54333 44455555555555555443 1244445555555555544443
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=164.08 Aligned_cols=154 Identities=23% Similarity=0.269 Sum_probs=106.5
Q ss_pred EEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccc--ccccccCCCceeeccCCcccCCCCCCccCCcccceeecccc
Q 042662 273 QLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIP--STLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMN 350 (690)
Q Consensus 273 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 350 (690)
.+++++|.++. +|..+. +.++.|++++|+++.++ ..+..+++|+.|++++|.+++..+..+..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45555555553 233222 34556666666666642 23556666677777777766666666777777777777777
Q ss_pred ccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 351 NFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 351 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
.+++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|.+++..|..+..+++|+.|++++|++.+.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 7776666667777788888888888877777777778888888888888887777777778888888888888776554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=3.7e-18 Score=173.14 Aligned_cols=170 Identities=23% Similarity=0.350 Sum_probs=82.7
Q ss_pred CCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCC
Q 042662 141 SLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNL 220 (690)
Q Consensus 141 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 220 (690)
.+++|++|++++|.+... +.+..+++|+.|++++|.+++..+ +..+. +|++|++++|.+++ ++ .+..+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-------~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~-~L~~L~l~~n~l~~-~~-~l~~l 111 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-------QGIQYLPNVTKLFLNGNKLTDIKP--LANLK-NLGWLFLDENKVKD-LS-SLKDL 111 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-------TTGGGCTTCCEEECCSSCCCCCGG--GTTCT-TCCEEECCSSCCCC-GG-GGTTC
T ss_pred hcCcccEEEccCCCcccC-------hhHhcCCCCCEEEccCCccCCCcc--cccCC-CCCEEECCCCcCCC-Ch-hhccC
Confidence 444555555555544332 223334444444444444443222 33333 45555555554443 12 24555
Q ss_pred CCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeC
Q 042662 221 TNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYL 300 (690)
Q Consensus 221 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 300 (690)
++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence 5555555555555542 2355555555555555555543 345555555555555555554433 445555555555
Q ss_pred CCCccCcccccccccCCCceeeccCCccc
Q 042662 301 GSNQLTSIPSTLWNLKDILHLNLSSNSFT 329 (690)
Q Consensus 301 ~~n~l~~~p~~~~~~~~L~~L~L~~n~l~ 329 (690)
++|.++.++. +..+++|+.|++++|.++
T Consensus 186 ~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 186 SKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred CCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 5555555432 444455555555555444
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=9.9e-18 Score=175.73 Aligned_cols=178 Identities=26% Similarity=0.225 Sum_probs=95.7
Q ss_pred CEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCcccc-CCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCC
Q 042662 224 IAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLC-GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGS 302 (690)
Q Consensus 224 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 302 (690)
+.++++++.++. +|..+. ..++.|+|++|.+++..+..|. .+++|+.|+|++|++++..+..|..+++|+.|+|++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 355666666553 343332 2455555655555554444444 555555555555555555555555555555555555
Q ss_pred CccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCc
Q 042662 303 NQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPN 382 (690)
Q Consensus 303 n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 382 (690)
|+++. ..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+.
T Consensus 98 N~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 98 NHLHT-----------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp SCCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CcCCc-----------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55554 3334444555555555555555555555555556666666666666543333
Q ss_pred cc---CCCCCCCEEECcCCcCcccCChhhhcCCC--CCEEEcCCCcCccc
Q 042662 383 SI---GDLISLKSLNLSNNNLSGTIPISLEKLLD--LKEINVSFNNLEGE 427 (690)
Q Consensus 383 ~l---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~l~ls~n~l~~~ 427 (690)
.+ ..+++|+.|||++|.+++..+..+..++. ++.|++++|++.+.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 33 44666666666666666544455555554 25666666666653
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.8e-17 Score=160.73 Aligned_cols=134 Identities=22% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeecc
Q 042662 294 NLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLE 372 (690)
Q Consensus 294 ~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 372 (690)
+|+.|++++|+++.++. .+..+++|+.|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+++|++|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44444444444444332 34444555555555555554445555555555555555555554444445566666666666
Q ss_pred CccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 373 YNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 373 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
+|++++..|..|..+++|+.|+|++|.+++..+..+..+++|+.+++++|++.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6666666666666666666666666666666555666666677777766666543
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=160.62 Aligned_cols=135 Identities=23% Similarity=0.251 Sum_probs=89.2
Q ss_pred CCEEEeeCCcCcccCc-ccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeecc
Q 042662 271 LFQLDLGGNKLCGFIP-ACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLS 348 (690)
Q Consensus 271 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 348 (690)
++.|+|++|.+++..+ ..|..+++|+.|++++|++++++. .+..+++|+.|+|++|.+++..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3445555555544432 234455555555555555555433 45555556666666666665555556667777777777
Q ss_pred ccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCC
Q 042662 349 MNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 349 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 405 (690)
+|.+++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777777777777778888888888888887778888888888888888888876654
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.1e-17 Score=175.26 Aligned_cols=174 Identities=25% Similarity=0.252 Sum_probs=115.6
Q ss_pred EEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCccccc-CCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcC
Q 042662 176 YFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEIS-NLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLED 254 (690)
Q Consensus 176 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 254 (690)
.++++++.++. +|..+. ..++.|+|++|++++..+..+. .+++|+.|++++|.+++..+..|..+++|++|+|++
T Consensus 22 ~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 44444444442 333222 2567777777777766666665 777777777777777776667777777788888877
Q ss_pred CcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccc----cccCCCceeeccCCcccC
Q 042662 255 NQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTL----WNLKDILHLNLSSNSFTG 330 (690)
Q Consensus 255 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~----~~~~~L~~L~L~~n~l~~ 330 (690)
|++++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 7777666666777777788888887777777777777777888888777777776544 346667777777776664
Q ss_pred CCCCCccCCcc--cceeeccccccc
Q 042662 331 PLPLKIGNFNV--LIQLDLSMNNFS 353 (690)
Q Consensus 331 ~~~~~~~~l~~--L~~L~Ls~n~l~ 353 (690)
..+..+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44344444444 255666666554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4.3e-17 Score=159.09 Aligned_cols=152 Identities=26% Similarity=0.307 Sum_probs=99.5
Q ss_pred CcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeC
Q 042662 199 MEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGG 278 (690)
Q Consensus 199 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 278 (690)
-+.++.++++++ .+|..+ .++|+.|++++|.+++..|..|..+++|++|+|++|.+....+..|..+++|+.|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666666655 444433 26677777777777766666677777777777777777655555566777777777777
Q ss_pred CcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccc
Q 042662 279 NKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFS 353 (690)
Q Consensus 279 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 353 (690)
|.+++..+..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777766666666677777777777777777666666666666666666666544445555555666666555554
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.8e-17 Score=158.35 Aligned_cols=154 Identities=21% Similarity=0.242 Sum_probs=90.5
Q ss_pred CEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCC
Q 042662 224 IAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSN 303 (690)
Q Consensus 224 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 303 (690)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..+..|..+++|+.|+|++|.+++..|..|..+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~--------- 81 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS--------- 81 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS---------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC---------
Confidence 34555555555 2333322 35555555555555444444555555555555555555444444444444
Q ss_pred ccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcc
Q 042662 304 QLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNS 383 (690)
Q Consensus 304 ~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 383 (690)
|++|+|++|.++...+..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..
T Consensus 82 --------------L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 82 --------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp --------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------------CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 445555555554333334455666666666666666666666777777777777777777666667
Q ss_pred cCCCCCCCEEECcCCcCccc
Q 042662 384 IGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 384 l~~l~~L~~L~Ls~n~l~~~ 403 (690)
+..+++|+.|++++|.+...
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTTCTTCCEEECCSSCEECS
T ss_pred HhCCCCCCEEEeCCCCcCCC
Confidence 77778888888888877654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.4e-17 Score=181.16 Aligned_cols=154 Identities=29% Similarity=0.381 Sum_probs=92.6
Q ss_pred ccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhhh
Q 042662 115 IFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIGN 194 (690)
Q Consensus 115 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~ 194 (690)
+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+. ..+..
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~~l--~~l~~ 129 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-------SSLKDLKKLKSLSLEHNGISDI--NGLVH 129 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------TTSTTCTTCCEEECTTSCCCCC--GGGGG
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-------hhhccCCCCCEEEecCCCCCCC--ccccC
Confidence 4444555555555555544322 45555555555555554432 2344555555555555555542 23444
Q ss_pred ccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 042662 195 LSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQL 274 (690)
Q Consensus 195 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 274 (690)
++ +|+.|+|++|.+++. ..++.+++|+.|+|++|.+++..| +..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 130 l~-~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L 202 (605)
T 1m9s_A 130 LP-QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL 202 (605)
T ss_dssp CT-TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred CC-ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEE
Confidence 44 666666666666644 456677777777777777776555 77777777777777777753 347777777888
Q ss_pred EeeCCcCcccCc
Q 042662 275 DLGGNKLCGFIP 286 (690)
Q Consensus 275 ~L~~n~l~~~~~ 286 (690)
+|++|.+.+...
T Consensus 203 ~L~~N~l~~~p~ 214 (605)
T 1m9s_A 203 ELFSQECLNKPI 214 (605)
T ss_dssp ECCSEEEECCCC
T ss_pred EccCCcCcCCcc
Confidence 887777765433
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.2e-20 Score=208.49 Aligned_cols=204 Identities=21% Similarity=0.167 Sum_probs=119.5
Q ss_pred cCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCc-------------CcccCCccccCCCCCCEEe-cCCCCCCC
Q 042662 31 FNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNK-------------LVGVVPTAIFNVSTLKSLY-LHNVRLPN 96 (690)
Q Consensus 31 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~~~l~~ 96 (690)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 45666666667766665 556666666666666665553 3444445555555544444 34433333
Q ss_pred CCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCE
Q 042662 97 LEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEY 176 (690)
Q Consensus 97 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~ 176 (690)
|+.+.+.+|.++ ...+ ..|+.|+|++|.+++. +.++.+++|+.
T Consensus 425 L~~l~l~~n~i~------------------------~l~~------~~L~~L~Ls~n~l~~l-------p~~~~l~~L~~ 467 (567)
T 1dce_A 425 LRSKFLLENSVL------------------------KMEY------ADVRVLHLAHKDLTVL-------CHLEQLLLVTH 467 (567)
T ss_dssp HHHHHHHHHHHH------------------------HHHH------TTCSEEECTTSCCSSC-------CCGGGGTTCCE
T ss_pred hhhhhhhccccc------------------------ccCc------cCceEEEecCCCCCCC-------cCccccccCcE
Confidence 333333333333 2111 1255555555555442 12455555556
Q ss_pred EEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccc-hhhhcCCCCCCEEeCcCC
Q 042662 177 FGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSI-PIALGKLKKLQLLSLEDN 255 (690)
Q Consensus 177 L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n 255 (690)
|++++|.++ .+|..++.+. +|+.|+|++|++++ +| .++.+++|+.|++++|.+++.. |..++.+++|+.|++++|
T Consensus 468 L~Ls~N~l~-~lp~~~~~l~-~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 468 LDLSHNRLR-ALPPALAALR-CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp EECCSSCCC-CCCGGGGGCT-TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred eecCccccc-ccchhhhcCC-CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 666666555 5566666665 67777777777765 45 6777777777777777777665 777777777777777777
Q ss_pred cCcccCCc---cccCCCCCCEEEe
Q 042662 256 QLEGSIPD---NLCGLAALFQLDL 276 (690)
Q Consensus 256 ~l~~~~~~---~~~~l~~L~~L~L 276 (690)
.+++..|. .+..+++|+.|++
T Consensus 544 ~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 544 SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCCCccHHHHHHHHCcccCccCC
Confidence 77765442 2234677777753
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=2.8e-20 Score=205.61 Aligned_cols=120 Identities=32% Similarity=0.325 Sum_probs=66.0
Q ss_pred CCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCc
Q 042662 295 LRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 295 L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 374 (690)
|+.|+|++|.++++|. +..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 5555555555555554 555555555555555555 455555555555555555555554 34 4555555555666555
Q ss_pred cccccC-CcccCCCCCCCEEECcCCcCcccCCh---hhhcCCCCCEEE
Q 042662 375 RLQGSI-PNSIGDLISLKSLNLSNNNLSGTIPI---SLEKLLDLKEIN 418 (690)
Q Consensus 375 ~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~l~ 418 (690)
++++.. |..++.+++|+.|+|++|.+++..|. .+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 555544 55555555566666666655544332 122345555554
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.3e-16 Score=155.71 Aligned_cols=134 Identities=28% Similarity=0.333 Sum_probs=63.1
Q ss_pred CCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeec
Q 042662 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDL 347 (690)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 347 (690)
++|+.|+|++|.+++..|..+..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|++++..+..+..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 344444444444444444444444444444444444444332 2233444444444444444333333444444444444
Q ss_pred cccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCccc
Q 042662 348 SMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 348 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 403 (690)
++|.++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 444444 3344444555555555555555544444455555555555555555443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=3.5e-17 Score=155.87 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=91.3
Q ss_pred CCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeecc
Q 042662 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLS 348 (690)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 348 (690)
++|+.|++++|.+. .+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 34444444444444 222 2444445555555555443332 34455666666666666665556666666777777777
Q ss_pred ccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCc
Q 042662 349 MNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLE 425 (690)
Q Consensus 349 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~ 425 (690)
+|.+++..+..+..+++|++|++++|++.+.+| .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 777766666667777777777777776333444 567777777777777777753 3 5677777888888777764
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.3e-17 Score=156.28 Aligned_cols=132 Identities=25% Similarity=0.316 Sum_probs=67.7
Q ss_pred CeeeCCCCccCcccccccccCCCceeeccCCcccCCCCC-CccCCcccceeeccccccccccCccccCCCCCCeeeccCc
Q 042662 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPL-KIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 296 ~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 374 (690)
+.+++++|+++.+|..+.. +++.|++++|.+++..+. .+..+++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3444444444444443322 445555555555433332 2445555555555555555555555555555555555555
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 375 RLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 375 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 5555555555555555555555555555555555555555555555555554443
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.2e-16 Score=152.21 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=79.5
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
+|+.|++++|.++ .+| .+..+++|+.|++++|.++. +..+..+++|++|++++|.+++..+..++.+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5666666666665 333 45556666666666664442 2245556666666666666655555555556666666666
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCc-cCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeecccccc
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQ-LTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNF 352 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 352 (690)
+|.+++..+..++.+++|+.|++++|. ++.+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666655555555555566666665555 44444 34455555555555555543 22 334444444444444443
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.8e-17 Score=164.00 Aligned_cols=166 Identities=17% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCC
Q 042662 223 LIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGS 302 (690)
Q Consensus 223 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 302 (690)
+..+++++|.++... .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444444222 34445555555555555542 23 34455555555555555554433 55555566666666
Q ss_pred CccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCc
Q 042662 303 NQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPN 382 (690)
Q Consensus 303 n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 382 (690)
|+++++|.... ++|+.|++++|++++. + .+..+++|+.|++++|.+++. + .+..+++|+.|++++|++++. .
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~ 166 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--G 166 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--T
T ss_pred CccCCcCcccc--CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--H
Confidence 65555543222 5555555555555532 1 344455555555555555432 1 344555555555555555543 3
Q ss_pred ccCCCCCCCEEECcCCcCcc
Q 042662 383 SIGDLISLKSLNLSNNNLSG 402 (690)
Q Consensus 383 ~l~~l~~L~~L~Ls~n~l~~ 402 (690)
.+..+++|+.|++++|.+++
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEEC
T ss_pred HhccCCCCCEEeCCCCcccC
Confidence 44555555555555555543
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=8.8e-18 Score=191.55 Aligned_cols=183 Identities=24% Similarity=0.235 Sum_probs=88.5
Q ss_pred cchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCccccccccc
Q 042662 236 SIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNL 315 (690)
Q Consensus 236 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~ 315 (690)
..+..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++.+|..+..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34555666666666666666665 45555556666666666666666 55555666666666666666666666666666
Q ss_pred CCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCC-CCeeeccCccccccCCcccCCCCCCCEEE
Q 042662 316 KDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKD-LQYLFLEYNRLQGSIPNSIGDLISLKSLN 394 (690)
Q Consensus 316 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 394 (690)
++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 66666666666665 55656666666666666666666666655543321 223566677766666543 34455
Q ss_pred CcCC--------cCcccCChhhhcCCCCCEEEcCCCcCccc
Q 042662 395 LSNN--------NLSGTIPISLEKLLDLKEINVSFNNLEGE 427 (690)
Q Consensus 395 Ls~n--------~l~~~~p~~l~~l~~L~~l~ls~n~l~~~ 427 (690)
+++| .+.+..+..+..+..+....+++|-+.+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~ 406 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH 406 (727)
T ss_dssp ------------------------------------CCCGG
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence 5555 23333333444455555566677766543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.2e-17 Score=190.40 Aligned_cols=181 Identities=23% Similarity=0.237 Sum_probs=92.7
Q ss_pred cCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccC
Q 042662 212 SIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGN 291 (690)
Q Consensus 212 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 291 (690)
..+..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|.++ .+|..++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666667777777777666 45555556677777777777766 56666667777777777777766 45666666
Q ss_pred CCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcc-cceeeccccccccccCccccCCCCCCeee
Q 042662 292 LTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNV-LIQLDLSMNNFSGVIPTKIGGLKDLQYLF 370 (690)
Q Consensus 292 l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 370 (690)
+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.. |+.|+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 77777777777777667766667777777777777777666655544322 233667777777666543 34445
Q ss_pred ccCc--------cccccCCcccCCCCCCCEEECcCCcCc
Q 042662 371 LEYN--------RLQGSIPNSIGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 371 L~~n--------~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 401 (690)
+++| .+.+..+..+..+..+....++.|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5554 233333334445555566666666654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=7.6e-17 Score=160.81 Aligned_cols=168 Identities=19% Similarity=0.279 Sum_probs=110.5
Q ss_pred cCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEee
Q 042662 198 SMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLG 277 (690)
Q Consensus 198 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 277 (690)
++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 4455556666665322 35566667777777776663 33 46666777777777777665433 6667777777777
Q ss_pred CCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC
Q 042662 278 GNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP 357 (690)
Q Consensus 278 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 357 (690)
+|++++..+ +.. ++|+.|++++|++++++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 777665332 222 67777777777777764 466677777777777777653 3 566777777777777777765
Q ss_pred ccccCCCCCCeeeccCcccccc
Q 042662 358 TKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 358 ~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
..+..+++|+.|++++|++.+.
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHhccCCCCCEEeCCCCcccCC
Confidence 5577778888888888887644
No 122
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.67 E-value=1.2e-17 Score=169.50 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=53.4
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKV 654 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~ 654 (690)
||+..++.+|.|+|||||||+|+||+| |+.|+.... ...+...+.. ..... ... ++-..+
T Consensus 216 PE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~--~~~~~~~i~~---~~~~~-----~p~---------~~~~~~ 276 (308)
T 4gt4_A 216 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS--NQDVVEMIRN---RQVLP-----CPD---------DCPAWV 276 (308)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC--HHHHHHHHHT---TCCCC-----CCT---------TCCHHH
T ss_pred HHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC--HHHHHHHHHc---CCCCC-----Ccc---------cchHHH
Confidence 999999999999999999999999999 899986432 2233333322 11110 111 122346
Q ss_pred HHHHhcch----------HHHHHHHHhh
Q 042662 655 IDANLLTR----------EDNYFMTKEQ 672 (690)
Q Consensus 655 ~~~al~C~----------~~v~~~L~~~ 672 (690)
.+++..|. .||+++|+..
T Consensus 277 ~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 277 YALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp HHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 67788898 8899998754
No 123
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.67 E-value=8.1e-17 Score=165.00 Aligned_cols=47 Identities=32% Similarity=0.484 Sum_probs=39.8
Q ss_pred cccEecccCceeEEEEEeC------CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
-.+.||+|+||+||+|++. +++.||||+++.......++|.+|++++
T Consensus 45 l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il 97 (329)
T 4aoj_A 45 LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL 97 (329)
T ss_dssp EEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHH
Confidence 3477999999999999974 4789999999877666678899999988
No 124
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.65 E-value=1.5e-16 Score=160.65 Aligned_cols=46 Identities=30% Similarity=0.465 Sum_probs=37.3
Q ss_pred ccEecccCceeEEEEEeC------CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 530 NNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 530 ~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.+.||+|+||+||+|++. +|..||||+++.......++|.+|++++
T Consensus 18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il 69 (299)
T 4asz_A 18 KRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELL 69 (299)
T ss_dssp EEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHH
T ss_pred eeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHH
Confidence 467999999999999874 4788999999877666678899999988
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.2e-16 Score=165.36 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=50.2
Q ss_pred CCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCC-EEEeeCCcCcccCcccccCCCCCCee
Q 042662 220 LTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALF-QLDLGGNKLCGFIPACSGNLTNLRKL 298 (690)
Q Consensus 220 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 298 (690)
+++|+.+++++|.++...+.+|.+|.+|+.|++.+| +...-+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455555555555555444445555555555555554 4433344455555555 555554 4444444455555555555
Q ss_pred eCCCCccCcccc-cccccCCCcee
Q 042662 299 YLGSNQLTSIPS-TLWNLKDILHL 321 (690)
Q Consensus 299 ~L~~n~l~~~p~-~~~~~~~L~~L 321 (690)
+++.|+++.++. .|.++++|+.+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEE
T ss_pred EeCCCccCccchhhhcCCcchhhh
Confidence 555555554433 34444444443
No 126
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=160.07 Aligned_cols=87 Identities=18% Similarity=0.101 Sum_probs=54.9
Q ss_pred Hhccc---CCcccccceEEehhHHHHHHhcCCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHH
Q 042662 576 KQYGR---EGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFM 652 (690)
Q Consensus 576 pe~~~---~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~ 652 (690)
||+.. .+.+|.|+|||||||+|+||+||+.|++.... ...+...+.. ...+|.+..... ++-.
T Consensus 203 PE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-~~~~~~~~~~-------~~~~p~~~~~~~------~~~~ 268 (307)
T 3omv_A 203 PEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-RDQIIFMVGR-------GYASPDLSKLYK------NCPK 268 (307)
T ss_dssp HHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-HHHHHHHHHT-------TCCCCCSTTSCT------TSCH
T ss_pred HHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCCh-HHHHHHHHhc-------CCCCCCcccccc------cchH
Confidence 99875 45699999999999999999999999864221 1111111211 112222211111 1223
Q ss_pred HHHHHHhcch----------HHHHHHHHhhhhhh
Q 042662 653 KVIDANLLTR----------EDNYFMTKEQRVSL 676 (690)
Q Consensus 653 ~~~~~al~C~----------~~v~~~L~~~~~~~ 676 (690)
.+.++...|+ .||++.|+.++.++
T Consensus 269 ~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 269 AMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp HHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence 4566777888 89999999887654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=9.4e-16 Score=145.14 Aligned_cols=131 Identities=28% Similarity=0.328 Sum_probs=106.5
Q ss_pred CEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc--cccccCCCceeeccCCcccCCCCCCccCCcccceeeccc
Q 042662 272 FQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS--TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSM 349 (690)
Q Consensus 272 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 349 (690)
+.+++++|++. .+|..+. .+|+.|++++|++++++. .+..+++|++|+|++|++++..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46667777664 3444332 377788888888877664 367788888888888888888788888888999999999
Q ss_pred cccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCC
Q 042662 350 NNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 350 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p 405 (690)
|.+++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99988888888889999999999999998889999999999999999999987765
No 128
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.63 E-value=5.9e-16 Score=159.56 Aligned_cols=157 Identities=27% Similarity=0.423 Sum_probs=127.8
Q ss_pred ccchhhHhhhccCCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH-----------------
Q 042662 513 KRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM----------------- 575 (690)
Q Consensus 513 ~~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~----------------- 575 (690)
.++++.++..++++|...+.||+|+||.||+|+..+|..||||++........+.|.+|++.+
T Consensus 27 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 106 (321)
T 2qkw_B 27 YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE 106 (321)
T ss_dssp ---CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC
T ss_pred eeecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC
Confidence 456778888999999999999999999999999988999999998776666677899999877
Q ss_pred --------------------------------------------------------------------------------
Q 042662 576 -------------------------------------------------------------------------------- 575 (690)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (690)
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 186 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS 186 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTC
T ss_pred CCeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccc
Confidence
Q ss_pred -----------------------HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCC-CcccHHHHHHhhCCC-Ccc
Q 042662 576 -----------------------KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFS-GEMTLKRWVNDFLPI-SVM 630 (690)
Q Consensus 576 -----------------------pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~-~~~~l~~~~~~~~~~-~~~ 630 (690)
||...++.++.++|||||||+++||+||+.|+..... +...+..|....... .+.
T Consensus 187 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (321)
T 2qkw_B 187 KKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLE 266 (321)
T ss_dssp EECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCC
T ss_pred cccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHH
Confidence 8888788899999999999999999999999875443 345678887665544 677
Q ss_pred ccccccccCCcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhh
Q 042662 631 EVVDTNLLSQEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRV 674 (690)
Q Consensus 631 ~~~D~~l~~~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~ 674 (690)
+++|+.+...... +....+.++...|+ .||++.|+.+.+
T Consensus 267 ~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 267 QIVDPNLADKIRP-----ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SSSSSSCTTCSCH-----HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HhcChhhccccCH-----HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 8888877654433 67778888999999 889888887754
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=140.16 Aligned_cols=130 Identities=27% Similarity=0.390 Sum_probs=89.4
Q ss_pred CeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcc
Q 042662 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNR 375 (690)
Q Consensus 296 ~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 375 (690)
+.+++++|.++.+|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 455666666666665443 45666666666665 455666666777777777777776666667777777777777777
Q ss_pred ccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccC
Q 042662 376 LQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEI 428 (690)
Q Consensus 376 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~ 428 (690)
+++..+..|..+++|+.|+|++|.++...+..+..+++|+.|++++|++.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 77666667777777777777777777665556777777777777777776543
No 130
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.59 E-value=3.7e-15 Score=151.43 Aligned_cols=92 Identities=8% Similarity=-0.026 Sum_probs=59.2
Q ss_pred HhcccCC------cccccceEEehhHHHHHHhcCCCCCCccCCC----------cccHHHHHHhhCCCCccccccccccC
Q 042662 576 KQYGREG------RVSTNGDVYSFGIMLMETFTRKKPTDEVFSG----------EMTLKRWVNDFLPISVMEVVDTNLLS 639 (690)
Q Consensus 576 pe~~~~~------~~~~k~DvysfGv~llel~tg~~p~~~~~~~----------~~~l~~~~~~~~~~~~~~~~D~~l~~ 639 (690)
||+..+. .++.|+|||||||+|+||+||+.|....... ......+..... .+.++|.+..
T Consensus 181 PE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~rp~~p~ 256 (303)
T 3hmm_A 181 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVC----EQKLRPNIPN 256 (303)
T ss_dssp HHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHT----TSCCCCCCCG
T ss_pred HHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHh----cccCCCCCCc
Confidence 8987543 5789999999999999999998875432111 111222222111 2233444433
Q ss_pred CcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhhh
Q 042662 640 QEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRVS 675 (690)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~~ 675 (690)
... ..++...+.+++..|+ .||+++|+++.+.
T Consensus 257 ~~~----~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 257 RWQ----SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp GGG----SSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccc----chHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 221 1156778889999998 8999999988754
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=3.8e-15 Score=153.97 Aligned_cols=267 Identities=14% Similarity=0.127 Sum_probs=171.4
Q ss_pred CCCCCEEEccCCcCCccCCccccC-CCCCCEEECcCCccc--ccCCcccCCCCCCCeeecccCcCcccCCccccC-----
Q 042662 9 LAELQKLWLDNNSLTGTIPSSIFN-LSSLSSLDLSDNSLT--GEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFN----- 80 (690)
Q Consensus 9 l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----- 80 (690)
+.+++.|.++++- ....-..+.. +++|++|||++|++. ...+ +.++.++.+.+..|.+. +.+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhccccccc
Confidence 5668888888652 2111122333 788999999999887 2222 22222444444444221 233444
Q ss_pred ---CCCCCEEecCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 042662 81 ---VSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157 (690)
Q Consensus 81 ---l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 157 (690)
|++|+.|+ +.. .++...+..|.++++|+.+++.+|.+..+.+.+|.++.++..+.+..+....
T Consensus 97 ~~g~~~L~~l~-------------L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~ 162 (329)
T 3sb4_A 97 TKGKQTLEKVI-------------LSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR 162 (329)
T ss_dssp EEECTTCCC-C-------------BCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH
T ss_pred ccccCCCcEEE-------------CCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh
Confidence 66544444 443 3443344556677777777777777776666677776666666555422100
Q ss_pred cCCCCCcccCCCCCCCCC--------------------------EEEccCCcCCCCCChhhhhccccCcEEEeecCcccc
Q 042662 158 STPKLSFLSSLSNCKYLE--------------------------YFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISG 211 (690)
Q Consensus 158 ~~~~~~~l~~l~~l~~L~--------------------------~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 211 (690)
....+.. ..+.++..|+ .+.+.++- .......+.....+|+.+++++|+++.
T Consensus 163 ~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 163 FKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp TSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred ccccccc-cccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 0000000 1122333333 33333221 111111122212389999999999997
Q ss_pred cCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCC-EEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCccccc
Q 042662 212 SIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQ-LLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSG 290 (690)
Q Consensus 212 ~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 290 (690)
..+..|.++++|+.+++.+| +....+.+|.+|.+|+ .+++.+ .++..-+.+|.++++|+.+++++|.+....+.+|.
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 77778999999999999998 8777888999999999 999998 77767778999999999999999999999899999
Q ss_pred CCCCCCeeeC
Q 042662 291 NLTNLRKLYL 300 (690)
Q Consensus 291 ~l~~L~~L~L 300 (690)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999999864
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.7e-15 Score=137.04 Aligned_cols=130 Identities=22% Similarity=0.234 Sum_probs=97.9
Q ss_pred CCCCCCEEEccCCcCC-ccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCE
Q 042662 8 NLAELQKLWLDNNSLT-GTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKS 86 (690)
Q Consensus 8 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 86 (690)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~--- 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN--- 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT---
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC---
Confidence 3577889999999888 67888888888999999999888865 67888888888888888888777776666665
Q ss_pred EecCCCCCCCCCEEeccCCccCcc-CCccccCCCCCCeEecccCcccccCC---ccccCCCCCCEEEccC
Q 042662 87 LYLHNVRLPNLEELLLWGNNFSGT-IPSFIFNASKLFTLGLEENSFSGFIP---NTFGSLRNLEWLSLND 152 (690)
Q Consensus 87 L~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~ 152 (690)
|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 90 ----------L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 ----------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ----------CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ----------CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 44444555555542 23567778888888888888887655 4677788888887753
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=8e-15 Score=136.82 Aligned_cols=133 Identities=25% Similarity=0.287 Sum_probs=94.7
Q ss_pred CCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCc
Q 042662 295 LRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 295 L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 374 (690)
.+.+++++|+++.+|..+. ++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3556666666666665443 56777777777776555556677777777777777777665666677778888888888
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 375 RLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 375 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.+|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8776666667777888888888888876655556777788888888887776554
No 134
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.58 E-value=1.7e-15 Score=156.58 Aligned_cols=158 Identities=32% Similarity=0.546 Sum_probs=129.2
Q ss_pred ccccchhhHhhhccCCCCcccEecccCceeEEEEEeCCCcEEEEEEeccccc-chHHHHHHHHHHH--------------
Q 042662 511 NQKRFTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYR-GAFKSFDIECDMM-------------- 575 (690)
Q Consensus 511 ~~~~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~-~~~~~f~~e~~~~-------------- 575 (690)
....|++.++..++++|...+.||+|+||.||+|...+|..||||++..... .....|.+|++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~ 95 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEE
Confidence 4567899999999999999999999999999999988899999999865442 2234688888766
Q ss_pred --------------------------------------------------------------------------------
Q 042662 576 -------------------------------------------------------------------------------- 575 (690)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (690)
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl 175 (326)
T 3uim_A 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVV 175 (326)
T ss_dssp ECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEE
T ss_pred EecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEe
Confidence
Q ss_pred ----------------------------HhcccCCcccccceEEehhHHHHHHhcCCCCCCcc---CCCcccHHHHHHhh
Q 042662 576 ----------------------------KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV---FSGEMTLKRWVNDF 624 (690)
Q Consensus 576 ----------------------------pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~---~~~~~~l~~~~~~~ 624 (690)
||+..++.++.++|||||||+++||+||+.|++.. ......+.+|++..
T Consensus 176 ~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~ 255 (326)
T 3uim_A 176 GDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGL 255 (326)
T ss_dssp CCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTT
T ss_pred ccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHH
Confidence 88887888999999999999999999999998632 23456788999888
Q ss_pred CCC-CccccccccccCCcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhh
Q 042662 625 LPI-SVMEVVDTNLLSQEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQR 673 (690)
Q Consensus 625 ~~~-~~~~~~D~~l~~~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~ 673 (690)
... ....++|+.+...... ++...+.+++..|+ .||+++|++..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~ 310 (326)
T 3uim_A 256 LKEKKLEALVDVDLQGNYKD-----EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG 310 (326)
T ss_dssp TSSCCSTTSSCTTCTTSCCH-----HHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred hhchhhhhhcChhhccccCH-----HHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence 776 6778888887765543 77888999999999 89999998643
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=3.3e-15 Score=138.18 Aligned_cols=107 Identities=29% Similarity=0.340 Sum_probs=47.0
Q ss_pred CCCCEEECCCCcCc-ccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeee
Q 042662 221 TNLIAIYLGRNKLN-GSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLY 299 (690)
Q Consensus 221 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 299 (690)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444444 33344444444444444444444433 3344444444444444444444444443444444444
Q ss_pred CCCCccCccc--ccccccCCCceeeccCCccc
Q 042662 300 LGSNQLTSIP--STLWNLKDILHLNLSSNSFT 329 (690)
Q Consensus 300 L~~n~l~~~p--~~~~~~~~L~~L~L~~n~l~ 329 (690)
+++|.++++| ..+..+++|+.|++++|.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 4444444433 23333444444444444443
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=6.3e-15 Score=136.28 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=68.6
Q ss_pred CCCCEEEccCCcCC-CCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEE
Q 042662 172 KYLEYFGFYNNPLG-GILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLL 250 (690)
Q Consensus 172 ~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 250 (690)
++|+.|++++|.++ +.+|..+..+. +|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 33444444444443 33444444443 555555555555543 445555555555665555555455555555555555
Q ss_pred eCcCCcCcccC-CccccCCCCCCEEEeeCCcCcccCc---ccccCCCCCCeeeCCCCccCccc
Q 042662 251 SLEDNQLEGSI-PDNLCGLAALFQLDLGGNKLCGFIP---ACSGNLTNLRKLYLGSNQLTSIP 309 (690)
Q Consensus 251 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~p 309 (690)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 55555555421 1345555555555555555554433 24445555555555555554444
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=4.4e-15 Score=134.34 Aligned_cols=109 Identities=24% Similarity=0.286 Sum_probs=50.9
Q ss_pred cCcEEEeecCccc-ccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEe
Q 042662 198 SMEDFQMHNCNIS-GSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDL 276 (690)
Q Consensus 198 ~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 276 (690)
+|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4555555555554 44444445555555555555555433 33444445555555555444434444444444444444
Q ss_pred eCCcCccc-CcccccCCCCCCeeeCCCCccCcc
Q 042662 277 GGNKLCGF-IPACSGNLTNLRKLYLGSNQLTSI 308 (690)
Q Consensus 277 ~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 308 (690)
++|.+++. .+..++.+++|+.|++++|.++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 44444432 123344444444444444444443
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.4e-14 Score=134.33 Aligned_cols=130 Identities=27% Similarity=0.344 Sum_probs=109.2
Q ss_pred CEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccc
Q 042662 272 FQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNN 351 (690)
Q Consensus 272 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 351 (690)
+.+++++|+++. +|..+. ++|+.|++++|.++.+|..+..+++|+.|++++|.+++..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 467777777763 343332 57888888888888888888888899999999999988777888999999999999999
Q ss_pred cccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccC
Q 042662 352 FSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTI 404 (690)
Q Consensus 352 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 404 (690)
+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+....
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 99888888999999999999999999777778899999999999999987643
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=5.8e-13 Score=140.64 Aligned_cols=213 Identities=11% Similarity=0.134 Sum_probs=95.1
Q ss_pred CcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeC
Q 042662 199 MEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGG 278 (690)
Q Consensus 199 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 278 (690)
|+.+.+.. .++..-+..|.++++|+.+++.+|.++.....+|. +.+|+.+.+.++ +...-..+|.++++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 44444443 33323333445555555555555555543333343 345555555432 3333334455555555555544
Q ss_pred CcCcccCcccccCCCCCCeeeCCCCccCccc-ccccccCCCceeeccCCccc-----CCCCCCccCCcccceeecccccc
Q 042662 279 NKLCGFIPACSGNLTNLRKLYLGSNQLTSIP-STLWNLKDILHLNLSSNSFT-----GPLPLKIGNFNVLIQLDLSMNNF 352 (690)
Q Consensus 279 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l 352 (690)
+ ++.....+|.+ .+|+.+.+ .+.++.++ ..|..+++|+.+++.+|.+. ...+..|.++++|+.+++. +.+
T Consensus 236 ~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 236 N-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp T-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred C-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 2 33333334443 44555555 23344433 23444455555555444432 1223344445555555554 224
Q ss_pred ccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCC-CCCEEEcC
Q 042662 353 SGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLL-DLKEINVS 420 (690)
Q Consensus 353 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~l~ls 420 (690)
+.....+|.+|.+|+.++|..| ++..-..+|.++ +|+.+++++|.+....+..+..++ .++.+.+.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEEC
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeC
Confidence 4333444555555555555332 333334445555 555555555544433333343332 33444443
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.2e-13 Score=128.87 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=75.6
Q ss_pred CCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCC
Q 042662 12 LQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHN 91 (690)
Q Consensus 12 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 91 (690)
.+.+++++|.++ .+|..+ .++|++|++++|.+++..+..|+++++|++|++++|++++..+..+..+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------- 77 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-------- 77 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT--------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc--------
Confidence 466777777776 345433 357777777777777655556677777777777777776544444454443
Q ss_pred CCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCC
Q 042662 92 VRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTS 157 (690)
Q Consensus 92 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 157 (690)
|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+
T Consensus 78 -----L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 78 -----LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -----CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 3444444444443334444555566666666666654444444555555555555554443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=1.3e-12 Score=137.88 Aligned_cols=264 Identities=13% Similarity=0.144 Sum_probs=149.5
Q ss_pred CCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCccCCc
Q 042662 34 SSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPS 113 (690)
Q Consensus 34 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~ 113 (690)
..++.+.+.++ ++.+-..+|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+....+.
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--------------~l~~I~~~ 174 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--------------TLEQLKED 174 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--------------TCCEECSS
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--------------CccEehHH
Confidence 45555555433 333334445543 4555555544 333333444442 233333322 12222233
Q ss_pred cccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChhhh
Q 042662 114 FIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRAIG 193 (690)
Q Consensus 114 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 193 (690)
.|.++.+|+.+++.+|+++......|. +.+|+.+.+..+ +..... ..|.+|++|+.+.+..+ ++.....+|.
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~-----~aF~~~~~L~~l~l~~~-l~~I~~~aF~ 246 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS-----QAFLKTSQLKTIEIPEN-VSTIGQEAFR 246 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT-----TTTTTCTTCCCEECCTT-CCEECTTTTT
T ss_pred HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh-----hHhhCCCCCCEEecCCC-ccCccccccc
Confidence 344555555555555555544444444 345555555433 222211 34555555555555543 2322333344
Q ss_pred hccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCc-----ccchhhhcCCCCCCEEeCcCCcCcccCCccccCC
Q 042662 194 NLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLN-----GSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGL 268 (690)
Q Consensus 194 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 268 (690)
. . +|+.+.+. +.++..-...|.++++|+.+++.+|.+. ...+.+|.+|++|+.+.+.+ .+...-..+|.++
T Consensus 247 ~-~-~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c 322 (401)
T 4fdw_A 247 E-S-GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGN 322 (401)
T ss_dssp T-C-CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC
T ss_pred c-C-CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCC
Confidence 4 2 67777773 4455445566777888888888776654 35566788888888888884 4665556678888
Q ss_pred CCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccC-CCceeeccCCccc
Q 042662 269 AALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLK-DILHLNLSSNSFT 329 (690)
Q Consensus 269 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~-~L~~L~L~~n~l~ 329 (690)
++|+.+.|..+ ++.....+|.++ +|+.+++++|.+..++. .+..++ .+..|++..+.+.
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 88888888554 666667788888 88888888888777554 455553 6778888776543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=1.7e-12 Score=137.63 Aligned_cols=327 Identities=12% Similarity=0.079 Sum_probs=205.8
Q ss_pred ccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCC
Q 042662 5 ELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTL 84 (690)
Q Consensus 5 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 84 (690)
+|.+|.+|+.+.|..+ ++..-..+|.++++|+.++|..+ ++.+-...|.++.+|+.+.+..+ +...-..+|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~- 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF- 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC-
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc-
Confidence 3555555555555432 44333445555555555555443 33333444555555555544432 22222233333321
Q ss_pred CEEecCCCCCCCCCEEeccCCccCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCc
Q 042662 85 KSLYLHNVRLPNLEELLLWGNNFSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSF 164 (690)
Q Consensus 85 ~~L~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 164 (690)
...... ..........+.++++|+.+.+.++. .......|.++.+|+.+.+..+ +.....
T Consensus 142 -------------~~~~~~-~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~---- 201 (394)
T 4fs7_A 142 -------------KEITIP-EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRD---- 201 (394)
T ss_dssp -------------SEEECC-TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECT----
T ss_pred -------------cccccC-ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCc----
Confidence 111111 11121223457778889998887654 3355667888899998888766 332221
Q ss_pred ccCCCCCCCCCEEEccCCcCCCCCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCC
Q 042662 165 LSSLSNCKYLEYFGFYNNPLGGILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKL 244 (690)
Q Consensus 165 l~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 244 (690)
..+.++..|+.+.+..+... +........ .|+.+.+... ++..-...+..+..|+.+.+..+... .....|..+
T Consensus 202 -~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~-~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~ 275 (394)
T 4fs7_A 202 -YCFAECILLENMEFPNSLYY--LGDFALSKT-GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNC 275 (394)
T ss_dssp -TTTTTCTTCCBCCCCTTCCE--ECTTTTTTC-CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTC
T ss_pred -hhhccccccceeecCCCceE--eehhhcccC-CCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccc
Confidence 45677788887777655322 122222333 7888887644 23233456778899999999877544 556678889
Q ss_pred CCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeec
Q 042662 245 KKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNL 323 (690)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L 323 (690)
..++.+.+..+.+. ...|..+.+|+.+.+..+ +......+|.++++|+.+++.+ .++.+.. +|.++.+|+.+++
T Consensus 276 ~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 276 SGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECC
T ss_pred cccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEE
Confidence 99999888765432 346788999999999765 6666677899999999999974 4777754 6778899999999
Q ss_pred cCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCee
Q 042662 324 SSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYL 369 (690)
Q Consensus 324 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 369 (690)
..+ ++..-...|.++.+|+.+++..+ +. .+..+|.+|++|+.+
T Consensus 351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 351 PLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred Ccc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 876 66556678899999999999765 22 234578888888764
No 143
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.51 E-value=6.1e-14 Score=143.39 Aligned_cols=155 Identities=25% Similarity=0.380 Sum_probs=116.4
Q ss_pred ccccchhhHhhhccCCCCcc------cEecccCceeEEEEEeCCCcEEEEEEecccc----cchHHHHHHHHHHH-----
Q 042662 511 NQKRFTYLELFQATNGFSEN------NLIGRGGFGSVYKARIHDGMEAAVKVFDLQY----RGAFKSFDIECDMM----- 575 (690)
Q Consensus 511 ~~~~~~~~~l~~at~~f~~~------~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~----~~~~~~f~~e~~~~----- 575 (690)
....|++.++..+|++|+.. +.||+|+||.||+|.. ++..||||++.... ....+.|.+|++.+
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 45678999999999999988 8999999999999997 68899999986532 23356788898877
Q ss_pred --------------------------------------------------------------------------------
Q 042662 576 -------------------------------------------------------------------------------- 575 (690)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (690)
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~ 169 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEA 169 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTT
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCC
Confidence
Q ss_pred ----------------------------------HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCCcccHHHHH
Q 042662 576 ----------------------------------KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWV 621 (690)
Q Consensus 576 ----------------------------------pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~~l~~~~ 621 (690)
||... +.++.++|||||||+++||+||+.|++.... ...+..|.
T Consensus 170 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~-~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~~~~ 247 (307)
T 2nru_A 170 FTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIK 247 (307)
T ss_dssp CCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT-TEECTHHHHHHHHHHHHHHHHCCCSBCTTBS-SSBTTHHH
T ss_pred CcEEEeecccccccccccccccccccCCCcCcCChHHhc-CCCCccchhHHHHHHHHHHHHCCCCcccCcc-hHHHHHHH
Confidence 66543 4678999999999999999999999875432 22334444
Q ss_pred HhhCCC--CccccccccccCCcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhh
Q 042662 622 NDFLPI--SVMEVVDTNLLSQEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRV 674 (690)
Q Consensus 622 ~~~~~~--~~~~~~D~~l~~~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~ 674 (690)
...... .+.+.+|+.+..... .....+.++...|+ .+|++.|++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 248 EEIEDEEKTIEDYIDKKMNDADS------TSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHTTSCCHHHHSCSSCSCCCH------HHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHhhhhhhhhhhhccccccccch------HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 433322 355666666643222 56667888888998 899999998865
No 144
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.50 E-value=1.8e-14 Score=148.77 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=32.0
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||+..++.+|.|+|||||||+|+||+| |+.|+..
T Consensus 256 PE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 256 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred HHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999 8999864
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=4.8e-14 Score=131.32 Aligned_cols=131 Identities=19% Similarity=0.159 Sum_probs=79.5
Q ss_pred CCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeee
Q 042662 291 NLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLF 370 (690)
Q Consensus 291 ~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 370 (690)
.+++|+.|++++|+++.+|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34455555555555554433222222566666666665543 3555666666666666666654444446677777777
Q ss_pred ccCccccccCCc--ccCCCCCCCEEECcCCcCcccCCh----hhhcCCCCCEEEcCCCcCc
Q 042662 371 LEYNRLQGSIPN--SIGDLISLKSLNLSNNNLSGTIPI----SLEKLLDLKEINVSFNNLE 425 (690)
Q Consensus 371 L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~l~ls~n~l~ 425 (690)
+++|++. .+|. .+..+++|+.|++++|.++. +|. .+..+++|+.||+++|...
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777774 4444 66777777777777777763 444 3677778888887777654
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=2.5e-12 Score=136.31 Aligned_cols=330 Identities=15% Similarity=0.115 Sum_probs=161.8
Q ss_pred CccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCc
Q 042662 27 PSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNN 106 (690)
Q Consensus 27 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~ 106 (690)
..+|.++++|+.+.|..+ ++.+-..+|.++++|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~----l~~------- 130 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM----LKS------- 130 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT----CCE-------
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc----eee-------
Confidence 345666667777776543 55444556666677777666543 33333445555555554433321 221
Q ss_pred cCccCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCC
Q 042662 107 FSGTIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGG 186 (690)
Q Consensus 107 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~ 186 (690)
.....+.+...+....... .......+|.++++|+.+.+.++.. .... ..+.++.+|+.+.+..+ +..
T Consensus 131 ---i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~-----~~F~~c~~L~~i~l~~~-~~~ 198 (394)
T 4fs7_A 131 ---IGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHN-----GLFSGCGKLKSIKLPRN-LKI 198 (394)
T ss_dssp ---ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECT-----TTTTTCTTCCBCCCCTT-CCE
T ss_pred ---ecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eecc-----ccccCCCCceEEEcCCC-ceE
Confidence 1112233332222222221 1222345677777777777765422 1111 34556666666655443 221
Q ss_pred CCChhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCcccc
Q 042662 187 ILPRAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLC 266 (690)
Q Consensus 187 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 266 (690)
.. ...+.++..|+.+.+..+... +...+....+|+.+.+..+ ++..-...|.
T Consensus 199 I~-------------------------~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~ 250 (394)
T 4fs7_A 199 IR-------------------------DYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFY 250 (394)
T ss_dssp EC-------------------------TTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTT
T ss_pred eC-------------------------chhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccc
Confidence 11 223344444444444433221 1122223345555555432 1212233455
Q ss_pred CCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceee
Q 042662 267 GLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLD 346 (690)
Q Consensus 267 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 346 (690)
++..|+.+.+..+.. ......|..+..++.+....+.+.. ..+..+.+|+.+.+.++ +...-...|.++.+|+.++
T Consensus 251 ~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 251 GCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp TCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ccccceeEEcCCCcc-eeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 555555555554422 2334445555555555544332111 23445556666666543 3333344566666777776
Q ss_pred ccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEE
Q 042662 347 LSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEI 417 (690)
Q Consensus 347 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l 417 (690)
+..+ ++.....+|.+|.+|+.+++..+ +...-..+|.+|++|+.+++..+ +. .+...+.++++|+.+
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6543 44444566777777777777655 55444567777777777777654 22 233455555555543
No 147
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=7.3e-14 Score=130.10 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=77.5
Q ss_pred ccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCC
Q 042662 217 ISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLR 296 (690)
Q Consensus 217 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 296 (690)
+.++.+|+.|++++|.++. +|......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456666677777766663 333222223667777776666654 4566666666666666666655444446666666
Q ss_pred eeeCCCCccCcccc--cccccCCCceeeccCCcccCCCCCC----ccCCcccceeecccccc
Q 042662 297 KLYLGSNQLTSIPS--TLWNLKDILHLNLSSNSFTGPLPLK----IGNFNVLIQLDLSMNNF 352 (690)
Q Consensus 297 ~L~L~~n~l~~~p~--~~~~~~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l 352 (690)
.|++++|.++.+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.||+++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666666654 5556666666666666665 23332 44555555555555544
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=3.5e-16 Score=149.05 Aligned_cols=101 Identities=21% Similarity=0.290 Sum_probs=45.6
Q ss_pred cCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCC-cccCCCCCCCEE
Q 042662 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIP-NSIGDLISLKSL 393 (690)
Q Consensus 315 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L 393 (690)
+++|+.|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|
T Consensus 69 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEE
T ss_pred CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEE
Confidence 333333333333333 233333333444444444444443 12 24444455555555555443211 244555555555
Q ss_pred ECcCCcCcccCCh----------hhhcCCCCCEEE
Q 042662 394 NLSNNNLSGTIPI----------SLEKLLDLKEIN 418 (690)
Q Consensus 394 ~Ls~n~l~~~~p~----------~l~~l~~L~~l~ 418 (690)
++++|.+++.+|. .+..+++|+.||
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5555555544333 255566666665
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=5.5e-16 Score=147.67 Aligned_cols=155 Identities=26% Similarity=0.282 Sum_probs=125.2
Q ss_pred hcCCCCCCEEeCcCCcCcccCCc------cccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccc
Q 042662 241 LGKLKKLQLLSLEDNQLEGSIPD------NLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWN 314 (690)
Q Consensus 241 l~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~ 314 (690)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 55567888888888888887776 78888999999999998887 45 778888999999999999888887777
Q ss_pred cCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccC-ccccCCCCCCeeeccCccccccCCcc----------
Q 042662 315 LKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIP-TKIGGLKDLQYLFLEYNRLQGSIPNS---------- 383 (690)
Q Consensus 315 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~---------- 383 (690)
+++|+.|++++|++++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 7889999999998885 44 57788899999999998875432 46778889999999999887765543
Q ss_pred cCCCCCCCEEECcCCcCc
Q 042662 384 IGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 384 l~~l~~L~~L~Ls~n~l~ 401 (690)
+..+++|+.|| +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67788899887 55554
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=9.3e-13 Score=121.65 Aligned_cols=106 Identities=24% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCc
Q 042662 295 LRKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 295 L~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 374 (690)
.+.+++++|.++.+|..+. ++|+.|+|++|++++..|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3556666666666665442 45555666666555555555555555555555555555444444445555555555555
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCcc
Q 042662 375 RLQGSIPNSIGDLISLKSLNLSNNNLSG 402 (690)
Q Consensus 375 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 402 (690)
++++..+..+..+++|++|+|++|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 5554444444555555555555555443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.4e-12 Score=120.51 Aligned_cols=110 Identities=22% Similarity=0.203 Sum_probs=98.7
Q ss_pred CCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECc
Q 042662 317 DILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLS 396 (690)
Q Consensus 317 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 396 (690)
..+.+++++|.++ .+|..+ .+.|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999998 466655 3889999999999999889999999999999999999998878888999999999999
Q ss_pred CCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 397 NNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 397 ~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
+|++++..+..+..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998877789999999999999999987655
No 152
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.39 E-value=1.8e-13 Score=140.03 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=72.6
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH------------------------------
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM------------------------------ 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~------------------------------ 575 (690)
|..-+.||+|+||+||+|+.. +|+.||||+++.......+.|.+|++++
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 555577999999999999975 6899999999766555566789999988
Q ss_pred --------------------------------------------------------------------------------
Q 042662 576 -------------------------------------------------------------------------------- 575 (690)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (690)
T Consensus 156 g~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~ 235 (346)
T 4fih_A 156 GALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY 235 (346)
T ss_dssp EEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGG
T ss_pred CcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcC
Confidence
Q ss_pred ---HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 ---KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 ---pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++||||+||+++||+||+.|+..
T Consensus 236 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~ 272 (346)
T 4fih_A 236 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN 272 (346)
T ss_dssp GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9998888999999999999999999999999863
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.8e-12 Score=118.82 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=54.3
Q ss_pred CeeeCCCCccCcccccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCcc
Q 042662 296 RKLYLGSNQLTSIPSTLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNR 375 (690)
Q Consensus 296 ~~L~L~~n~l~~~p~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 375 (690)
+.+++++|+++.+|..+. ++|+.|+|++|++++..|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666655655443 455555555555555545555555555555555555554433334455555555555555
Q ss_pred ccccCCcccCCCCCCCEEECcCCcCc
Q 042662 376 LQGSIPNSIGDLISLKSLNLSNNNLS 401 (690)
Q Consensus 376 l~~~~~~~l~~l~~L~~L~Ls~n~l~ 401 (690)
+++..+..+..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433334445555555555555544
No 154
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.35 E-value=2.8e-12 Score=128.43 Aligned_cols=45 Identities=29% Similarity=0.373 Sum_probs=36.6
Q ss_pred cEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 531 NLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 531 ~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
..||+|+||+||+|... .+..||||++.... ....+.|.+|++++
T Consensus 32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il 79 (290)
T 3fpq_A 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML 79 (290)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHH
Confidence 56999999999999975 58899999996543 23456799999988
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=3.4e-12 Score=118.29 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=96.1
Q ss_pred CceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcC
Q 042662 318 ILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSN 397 (690)
Q Consensus 318 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 397 (690)
-+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999996 6776654 8999999999999998899999999999999999999977777789999999999999
Q ss_pred CcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 398 NNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 398 n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
|++++..+..+..+++|+.|++++|++.+..+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997777779999999999999999886543
No 156
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.35 E-value=4e-13 Score=137.67 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||+||+|+.. +|+.||||++.... ....+.|.+|++++
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il 77 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVL 77 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHH
Confidence 45666688999999999999864 68999999996543 23456799999988
No 157
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.33 E-value=6.6e-13 Score=139.39 Aligned_cols=84 Identities=25% Similarity=0.261 Sum_probs=73.7
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH-----------------------------
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM----------------------------- 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~----------------------------- 575 (690)
.|...+.||+|+||.||+|+.. +|+.||||++........+.|.+|++++
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~ 231 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLE 231 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCCC
Confidence 4666678999999999999974 5899999999766555566799999988
Q ss_pred --------------------------------------------------------------------------------
Q 042662 576 -------------------------------------------------------------------------------- 575 (690)
Q Consensus 576 -------------------------------------------------------------------------------- 575 (690)
T Consensus 232 gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp 311 (423)
T 4fie_A 232 GGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTP 311 (423)
T ss_dssp TEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECT
T ss_pred CCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCc
Confidence
Q ss_pred ----HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 ----KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 ----pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++||||+||+++||+||+.|+..
T Consensus 312 ~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~ 349 (423)
T 4fie_A 312 YWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN 349 (423)
T ss_dssp TTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred CcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 9998889999999999999999999999999863
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.32 E-value=3.9e-10 Score=119.36 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=57.7
Q ss_pred hhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccccccccCC
Q 042662 238 PIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPSTLWNLKD 317 (690)
Q Consensus 238 p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~~~~~~~~ 317 (690)
..+|.++..|+.+.+.++... .-..+|.++++|+.+.+. +.+......+|.++.+|+.+++..+ ++.+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-------- 326 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL-------- 326 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC--------
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh--------
Confidence 344555555555555443221 223344555555555553 2333333444555555555554322 33332
Q ss_pred CceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECcC
Q 042662 318 ILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSN 397 (690)
Q Consensus 318 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 397 (690)
...|.++.+|+.+.+..+ ++.....+|.+|.+|+.+++.++.... ..+..+.+|+.+.+..
T Consensus 327 ---------------~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 327 ---------------DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ---------------TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred ---------------HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 334444555555555332 333334456666666666666554321 3445555666666554
Q ss_pred Cc
Q 042662 398 NN 399 (690)
Q Consensus 398 n~ 399 (690)
+.
T Consensus 388 ~~ 389 (394)
T 4gt6_A 388 GS 389 (394)
T ss_dssp --
T ss_pred CC
Confidence 43
No 159
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.31 E-value=1.3e-12 Score=134.42 Aligned_cols=64 Identities=27% Similarity=0.219 Sum_probs=51.2
Q ss_pred cccchhhHhhhccCC----------CCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 512 QKRFTYLELFQATNG----------FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 512 ~~~~~~~~l~~at~~----------f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
...+++++++.+++. |.....||+|+||.||+|+.. +|+.||||++........+.|.+|++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l 96 (321)
T 2c30_A 22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIM 96 (321)
T ss_dssp ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHH
Confidence 346788888888875 455678999999999999986 6999999999776666677899999887
No 160
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.30 E-value=8.7e-13 Score=138.54 Aligned_cols=51 Identities=25% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCCCcccEecccCceeEEEEEeC----CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH----DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~----~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
++|...+.||+|+||.||+|+.. ++..||||++.... ....++|.+|++++
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 100 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIM 100 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHH
Confidence 35777789999999999999875 57789999997643 33456799999888
No 161
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.27 E-value=1.6e-12 Score=130.90 Aligned_cols=50 Identities=26% Similarity=0.383 Sum_probs=40.0
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++
T Consensus 33 dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il 86 (311)
T 4aw0_A 33 DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM 86 (311)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred ccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHH
Confidence 4556688999999999999864 68999999996432 33456799999988
No 162
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.27 E-value=3.2e-12 Score=126.81 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=36.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||+||+|... +|+.||||++.... ....+.|.+|++++
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il 67 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL 67 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHH
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHH
Confidence 45666788999999999999864 68999999986433 22356799999988
No 163
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.24 E-value=6.9e-12 Score=128.26 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=41.3
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+|...+.||+|+||.||+|+.. +|..||||++........+.|.+|++.+
T Consensus 11 ~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l 61 (310)
T 3s95_A 11 DLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVM 61 (310)
T ss_dssp GEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 3445588999999999999975 5899999998766556677899999888
No 164
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.24 E-value=2.3e-12 Score=131.36 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=32.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCcc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV 610 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~ 610 (690)
||...+..++.++|||||||+++||+||+.|+...
T Consensus 225 PE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~ 259 (336)
T 4g3f_A 225 PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQY 259 (336)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 89888899999999999999999999999998653
No 165
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.24 E-value=1.1e-12 Score=132.16 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=32.0
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++||||+||+++||+||+.|+..
T Consensus 195 PE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~ 228 (304)
T 3ubd_A 195 PEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG 228 (304)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHhccCCCCCCCcccchHHHHHHHHhCCCCCCC
Confidence 9998889999999999999999999999999863
No 166
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=126.29 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=37.3
Q ss_pred cccEecccCceeEEEEEeC----CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIH----DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~----~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
-.+.||+|+||.||+|... .+..||||++.... ....+.|.+|++++
T Consensus 53 i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 104 (325)
T 3kul_A 53 IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIM 104 (325)
T ss_dssp EEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999984 45679999997653 33456799999887
No 167
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.23 E-value=4.6e-12 Score=130.61 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=53.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKV 654 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~ 654 (690)
||+..++.++.++|||||||+++||+| |+.|++... ...+...+...... .... .....+
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~~~~~~~~--------~~~~---------~~~~~~ 248 (327)
T 3poz_A 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP--ASEISSILEKGERL--------PQPP---------ICTIDV 248 (327)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--GGGHHHHHHTTCCC--------CCCT---------TBCHHH
T ss_pred hHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC--HHHHHHHHHcCCCC--------CCCc---------cCCHHH
Confidence 888888899999999999999999999 999986432 22233333221100 0001 112245
Q ss_pred HHHHhcch----------HHHHHHHHhhhh
Q 042662 655 IDANLLTR----------EDNYFMTKEQRV 674 (690)
Q Consensus 655 ~~~al~C~----------~~v~~~L~~~~~ 674 (690)
.++...|+ .+++++|+.+..
T Consensus 249 ~~li~~~l~~~p~~Rps~~ell~~l~~~~~ 278 (327)
T 3poz_A 249 YMIMVKCWMIDADSRPKFRELIIEFSKMAR 278 (327)
T ss_dssp HHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence 66777787 889999988764
No 168
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.22 E-value=1.6e-11 Score=126.32 Aligned_cols=93 Identities=11% Similarity=-0.028 Sum_probs=57.4
Q ss_pred HhcccC-----CcccccceEEehhHHHHHHhcCCCCCCccCCCcc-----------cHHHHHHhhCCCCccccccccccC
Q 042662 576 KQYGRE-----GRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEM-----------TLKRWVNDFLPISVMEVVDTNLLS 639 (690)
Q Consensus 576 pe~~~~-----~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~D~~l~~ 639 (690)
||+..+ ..++.++|||||||+++||+||+.|++....... ...++........ ..|.+..
T Consensus 202 PE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 277 (322)
T 3soc_A 202 PEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKK----KRPVLRD 277 (322)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSC----CCCCCCG
T ss_pred HhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhccc----CCCCccc
Confidence 777655 4667789999999999999999999864332111 1222222222111 1111111
Q ss_pred CcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhhhh
Q 042662 640 QEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRVSL 676 (690)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~~~ 676 (690)
... ...+...+.++...|+ .||+++|+++++..
T Consensus 278 ~~~----~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~~ 320 (322)
T 3soc_A 278 YWQ----KHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRLT 320 (322)
T ss_dssp GGG----SSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred ccc----ccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence 111 1145667888888898 89999999987653
No 169
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.22 E-value=8.5e-12 Score=126.57 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=39.8
Q ss_pred CCcccEecccCceeEEEEEe-----CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARI-----HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l-----~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|++ .+|..||||++........+.|.+|++++
T Consensus 12 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l 65 (295)
T 3ugc_A 12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65 (295)
T ss_dssp EEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHH
T ss_pred hhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHH
Confidence 33447899999999999985 36889999999876655667899999887
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=1.6e-09 Score=114.53 Aligned_cols=134 Identities=10% Similarity=0.141 Sum_probs=86.7
Q ss_pred cCcccccCCCCCCeeeCCCCccCccc-ccccccCCCceeeccCCcccCCCCCCccCCcccceeeccccccccccCccccC
Q 042662 284 FIPACSGNLTNLRKLYLGSNQLTSIP-STLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGG 362 (690)
Q Consensus 284 ~~~~~~~~l~~L~~L~L~~n~l~~~p-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 362 (690)
....+|..+.+|+.+.+.++. ..+. ..+.+++.|+.+.+. +.++..-...|.++.+|+.+++..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 334566667777777765433 2332 356667777777775 3344444567778888888888754 55556678999
Q ss_pred CCCCCeeeccCccccccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcC
Q 042662 363 LKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNL 424 (690)
Q Consensus 363 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l 424 (690)
|.+|+.+.|..+ ++..-..+|.+|++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999999999755 664556789999999999999885432 3455677888888876654
No 171
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.20 E-value=5.3e-12 Score=136.35 Aligned_cols=51 Identities=24% Similarity=0.374 Sum_probs=42.0
Q ss_pred cCCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.++|.-.+.||+|+||.||+|...++..||||++.... ...+.|.+|++++
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l 237 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVM 237 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHH
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHH
Confidence 34455568899999999999999888999999997654 3467899999887
No 172
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.20 E-value=5.6e-11 Score=120.81 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=34.7
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|+. +|..||||++... ....+..|.+.+
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~ 54 (301)
T 3q4u_A 8 RDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELY 54 (301)
T ss_dssp GGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHH
T ss_pred CcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHH
Confidence 4566678999999999999998 7899999998543 233444454433
No 173
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.19 E-value=3.1e-11 Score=123.22 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=40.5
Q ss_pred ccCCCCcccEecccCceeEEEEEeCCCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
..++|.-.+.||+|+||+||+|.. .|..||||++..... ...++|.+|++++
T Consensus 35 ~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 88 (309)
T 3p86_A 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIM 88 (309)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHH
T ss_pred ChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 344566668899999999999988 688999999865442 2346788998877
No 174
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=99.19 E-value=2.1e-11 Score=127.66 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=63.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKVI 655 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~~ 655 (690)
||+..+..++.++|||||||+++||+||+.|++..... .....+........+.+++|+.+...... ++ +.
T Consensus 230 PE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~ 300 (364)
T 3op5_A 230 IDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD-PKYVRDSKIRYRENIASLMDKCFPAANAP-----GE---IA 300 (364)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC-HHHHHHHHHHHHHCHHHHHHHHSCTTCCC-----HH---HH
T ss_pred HHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC-HHHHHHHHHHhhhhHHHHHHHhcccccCH-----HH---HH
Confidence 88888888999999999999999999999998753322 23334444333335666666665432222 34 44
Q ss_pred HHHhcch----------HHHHHHHHhhhhhhhc
Q 042662 656 DANLLTR----------EDNYFMTKEQRVSLVF 678 (690)
Q Consensus 656 ~~al~C~----------~~v~~~L~~~~~~~~~ 678 (690)
++...|. .++++.|+++......
T Consensus 301 ~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~ 333 (364)
T 3op5_A 301 KYMETVKLLDYTEKPLYENLRDILLQGLKAIGS 333 (364)
T ss_dssp HHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 4455566 8899998888765543
No 175
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.17 E-value=6.1e-11 Score=121.00 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=36.6
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.. .+..||||++... ...+.|.+|++.+
T Consensus 10 ~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l 55 (307)
T 2eva_A 10 IEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIESE--SERKAFIVELRQL 55 (307)
T ss_dssp EEEEEEEECCSSSEEEEEEE-TTEEEEEEECSST--THHHHHHHHHHHH
T ss_pred eeeeeEeecCCCceEEEEEE-CCeeEEEEEecCh--hHHHHHHHHHHHH
Confidence 44457899999999999998 5789999998643 3456788888777
No 176
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.17 E-value=1.6e-11 Score=129.31 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=38.7
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|... +|..||||++..... ...++|.+|++++
T Consensus 115 ~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 166 (377)
T 3cbl_A 115 DLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARIL 166 (377)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHH
T ss_pred HeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHH
Confidence 3445578999999999999986 689999999865432 2345688888877
No 177
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.17 E-value=2.1e-11 Score=131.50 Aligned_cols=48 Identities=27% Similarity=0.381 Sum_probs=39.2
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.. .|..||||+++... ..+.|.+|++++
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l 240 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVM 240 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHH
T ss_pred HHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHH
Confidence 3455568899999999999998 47899999997643 456799999887
No 178
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=3.3e-11 Score=125.31 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=71.8
Q ss_pred eeeCCCC-ccCcccccccccCCCceeeccC-CcccCCCCCCccCCcccceeeccccccccccCccccCCCCCCeeeccCc
Q 042662 297 KLYLGSN-QLTSIPSTLWNLKDILHLNLSS-NSFTGPLPLKIGNFNVLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYN 374 (690)
Q Consensus 297 ~L~L~~n-~l~~~p~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 374 (690)
.++++++ +++.+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|.|++..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566665 6666776 66666777777775 6776666666777777777777777777766767777777777777777
Q ss_pred cccccCCcccCCCCCCCEEECcCCcCccc
Q 042662 375 RLQGSIPNSIGDLISLKSLNLSNNNLSGT 403 (690)
Q Consensus 375 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 403 (690)
++++..+..+..++ |+.|+|++|.+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 77755555555544 77777777777644
No 179
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.16 E-value=6.1e-11 Score=132.64 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=59.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKV 654 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~ 654 (690)
||+..++.++.++|||||||+++||+| |+.|+.... ...+...+.... . . .... ..-..+
T Consensus 508 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~--~~~~~~~i~~~~--~-~-----~~p~---------~~~~~l 568 (613)
T 2ozo_A 508 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGK--R-M-----ECPP---------ECPPEL 568 (613)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--SHHHHHHHHTTC--C-C-----CCCT---------TCCHHH
T ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC--HHHHHHHHHcCC--C-C-----CCCC---------cCCHHH
Confidence 888888899999999999999999999 999986432 222333332211 0 0 0111 111245
Q ss_pred HHHHhcch----------HHHHHHHHhhhhhhhccCCccccC
Q 042662 655 IDANLLTR----------EDNYFMTKEQRVSLVFNSAMERTV 686 (690)
Q Consensus 655 ~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~~~~ 686 (690)
.++...|+ .+++++|+.+..........+..+
T Consensus 569 ~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~~~~~~s~l 610 (613)
T 2ozo_A 569 YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGGSAL 610 (613)
T ss_dssp HHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSCSCCCSSSC
T ss_pred HHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhccccCCccce
Confidence 56777787 899999998877665544433333
No 180
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.16 E-value=7.5e-12 Score=133.66 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=47.5
Q ss_pred cchhhHhhhccCCCCcccEecccCceeEEEEEeCC-CcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 514 RFTYLELFQATNGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 514 ~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.+.+.++..++++|...++||+|+||+||+|+..+ |+.||||++.... ......|.+|++++
T Consensus 63 ~~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il 128 (437)
T 4aw2_A 63 TSKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVL 128 (437)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHH
T ss_pred cchhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHH
Confidence 34567788888999999999999999999999864 7899999986422 12233477777666
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.6e-12 Score=135.99 Aligned_cols=161 Identities=20% Similarity=0.172 Sum_probs=81.9
Q ss_pred CCCCEEeCcCCcCcccCCcccc-----CCCCCCEEEeeCCcCcccCcccc-cCCCCCCeeeCCCCccCccc-ccccccCC
Q 042662 245 KKLQLLSLEDNQLEGSIPDNLC-----GLAALFQLDLGGNKLCGFIPACS-GNLTNLRKLYLGSNQLTSIP-STLWNLKD 317 (690)
Q Consensus 245 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~p-~~~~~~~~ 317 (690)
+.|+.|++++|.++......+. ..++|+.|+|++|.++......+ ..+++|+.|+|++|.++... ..+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~---- 147 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR---- 147 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH----
Confidence 5677788887777643333222 22566677777766654322222 22345566666666555421 1110
Q ss_pred CceeeccCCcccCCCCCCc-cCCcccceeeccccccccc----cCccccCCCCCCeeeccCcccccc----CCcccCCCC
Q 042662 318 ILHLNLSSNSFTGPLPLKI-GNFNVLIQLDLSMNNFSGV----IPTKIGGLKDLQYLFLEYNRLQGS----IPNSIGDLI 388 (690)
Q Consensus 318 L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~ 388 (690)
..+ ...+.|++|+|++|.++.. ++..+..+++|++|+|++|.++.. ++..+...+
T Consensus 148 ----------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 148 ----------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp ----------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred ----------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 000 1223444555555544321 222334455666666666665432 234445556
Q ss_pred CCCEEECcCCcCccc----CChhhhcCCCCCEEEcCCCcCc
Q 042662 389 SLKSLNLSNNNLSGT----IPISLEKLLDLKEINVSFNNLE 425 (690)
Q Consensus 389 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~l~ls~n~l~ 425 (690)
+|+.|+|++|.++.. ++..+...++|+.|++++|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 677777777766643 2233445566777777777664
No 182
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=99.15 E-value=6.4e-11 Score=120.04 Aligned_cols=98 Identities=11% Similarity=-0.038 Sum_probs=59.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCC-c-ccHHHHHHhhCCCCccccccccccCCcccccccHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSG-E-MTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMK 653 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~-~-~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~ 653 (690)
||...+..++.++|||||||+++||+||+.|+...... . ..+............ +.+....+ + .
T Consensus 184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~---~ 249 (296)
T 3uzp_A 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-----EVLCKGYP------S---E 249 (296)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-----HHHTTTSC------H---H
T ss_pred hhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch-----HHHHhhCC------H---H
Confidence 77777778899999999999999999999998753221 1 112111111110000 00111111 2 3
Q ss_pred HHHHHhcch----------HHHHHHHHhhhhhhhccCCccccCC
Q 042662 654 VIDANLLTR----------EDNYFMTKEQRVSLVFNSAMERTVE 687 (690)
Q Consensus 654 ~~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~~~~~ 687 (690)
+.++...|. .++++.|+++..........+..|+
T Consensus 250 l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~~~~~~dw~ 293 (296)
T 3uzp_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWN 293 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTCCSSCCCGGG
T ss_pred HHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCCccccccccc
Confidence 555666676 8999999999887766555444443
No 183
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.15 E-value=7.6e-11 Score=120.44 Aligned_cols=51 Identities=31% Similarity=0.428 Sum_probs=37.5
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.. .+|..||||++.... ......|.+|++.+
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l 86 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLL 86 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHH
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHH
Confidence 3466668899999999999996 468999999986432 23355688888877
No 184
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=127.45 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=40.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||+||+|+.. +|+.||||++.... ....+.+.+|++++
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il 107 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKIL 107 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHH
Confidence 34666688999999999999864 68999999996543 23356788999988
No 185
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=99.14 E-value=4.9e-11 Score=124.27 Aligned_cols=103 Identities=9% Similarity=-0.064 Sum_probs=63.1
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKVI 655 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~~ 655 (690)
||+..+..++.++|||||||+++||+||+.|+.........+..+..... .......++......-. ++ +.
T Consensus 237 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~---l~ 307 (352)
T 2jii_A 237 MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFV-DKPGPFVGPCGHWIRPS-----ET---LQ 307 (352)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHH-HSCCCEECTTSCEECCC-----HH---HH
T ss_pred HHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhcc-CChhhhhhhccccCCCc-----HH---HH
Confidence 77777788999999999999999999999998754323222333322211 11222222221111111 33 44
Q ss_pred HHHhcch----------HHHHHHHHhhhhhhhccCCccccCC
Q 042662 656 DANLLTR----------EDNYFMTKEQRVSLVFNSAMERTVE 687 (690)
Q Consensus 656 ~~al~C~----------~~v~~~L~~~~~~~~~~~~~~~~~~ 687 (690)
++...|+ .+++++|+++..........+..++
T Consensus 308 ~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~~~~~dw~ 349 (352)
T 2jii_A 308 KYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVSPYDPIGLP 349 (352)
T ss_dssp HHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCTTSCCCCC
T ss_pred HHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCCcCccccCc
Confidence 4444555 8999999999888776655554444
No 186
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.14 E-value=3.7e-12 Score=130.76 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=37.3
Q ss_pred CcccEecccCceeEEEEEeC-----CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 528 SENNLIGRGGFGSVYKARIH-----DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 528 ~~~~~ig~g~~g~vy~~~l~-----~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
...+.||+|+||.||++.+. +|+.||||++..... ...+.|.+|++++
T Consensus 34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 87 (318)
T 3lxp_A 34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDIL 87 (318)
T ss_dssp EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHH
Confidence 34478999999999998763 578999999976532 3456788998877
No 187
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.14 E-value=8e-11 Score=117.59 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=39.3
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|...++..||||++..... ..++|.+|++.+
T Consensus 12 y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 59 (269)
T 4hcu_A 12 LTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVM 59 (269)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHH
T ss_pred ceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHH
Confidence 444578999999999999998889999999976543 356788998887
No 188
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=7.9e-12 Score=130.60 Aligned_cols=64 Identities=22% Similarity=0.191 Sum_probs=29.4
Q ss_pred CCCCCeeeCCCCccCc-----ccccccccCCCceeeccCCcccCC----CCCCccCCcccceeeccccccccc
Q 042662 292 LTNLRKLYLGSNQLTS-----IPSTLWNLKDILHLNLSSNSFTGP----LPLKIGNFNVLIQLDLSMNNFSGV 355 (690)
Q Consensus 292 l~~L~~L~L~~n~l~~-----~p~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~ 355 (690)
+++|++|+|++|.++. ++..+...++|+.|+|++|.++.. +...+...++|++|+|++|.++..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 3444444444444432 122333344455555555554421 222233445666666666666543
No 189
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.13 E-value=8.7e-11 Score=120.76 Aligned_cols=58 Identities=24% Similarity=0.460 Sum_probs=37.3
Q ss_pred hHhhhccCCCCcccEecccCceeEEEEEeCCC----cEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 518 LELFQATNGFSENNLIGRGGFGSVYKARIHDG----MEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 518 ~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~----~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+++....+.|.-.+.||+|+||.||+|..... ..||||++.... ....++|.+|++.+
T Consensus 16 ~~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 79 (323)
T 3qup_A 16 EDVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM 79 (323)
T ss_dssp CTTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHH
T ss_pred hhcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 34444556787789999999999999997543 279999986542 33456788888766
No 190
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.13 E-value=1.5e-11 Score=134.26 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=39.9
Q ss_pred CCCcccEecccCceeEEEEEeCC-CcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|+... +..||||++..... ..++|.+|++++
T Consensus 221 ~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 270 (495)
T 1opk_A 221 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVM 270 (495)
T ss_dssp GEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHH
T ss_pred HceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHH
Confidence 35556789999999999999865 78999999976543 467899999887
No 191
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.12 E-value=4.1e-12 Score=131.00 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=39.9
Q ss_pred CCcccEecccCceeEEEEEe-----CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARI-----HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l-----~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|++ .++..||||++........+.|.+|++++
T Consensus 25 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l 78 (327)
T 3lxl_A 25 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL 78 (327)
T ss_dssp EEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 34457899999999999984 46889999999776655667789999887
No 192
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.3e-10 Score=120.91 Aligned_cols=108 Identities=21% Similarity=0.196 Sum_probs=96.4
Q ss_pred ceeeccCC-cccCCCCCCccCCcccceeeccc-cccccccCccccCCCCCCeeeccCccccccCCcccCCCCCCCEEECc
Q 042662 319 LHLNLSSN-SFTGPLPLKIGNFNVLIQLDLSM-NNFSGVIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLISLKSLNLS 396 (690)
Q Consensus 319 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 396 (690)
..++++++ +++ .+|. +..+++|+.|+|++ |.+++..+..|.++++|+.|+|++|++++..|..|..+++|+.|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 887 5777 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CCcCcccCChhhhcCCCCCEEEcCCCcCcccCC
Q 042662 397 NNNLSGTIPISLEKLLDLKEINVSFNNLEGEIP 429 (690)
Q Consensus 397 ~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~~~p 429 (690)
+|+|++..+..+..+. |+.|++.+|++.+.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999977776676665 9999999999987643
No 193
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.12 E-value=7.5e-11 Score=127.15 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...++..||||++..... ..++|.+|++++
T Consensus 185 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 233 (452)
T 1fmk_A 185 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVM 233 (452)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHH
T ss_pred HceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHH
Confidence 3445578999999999999998888899999976543 356799999887
No 194
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.12 E-value=2.4e-11 Score=123.67 Aligned_cols=47 Identities=30% Similarity=0.526 Sum_probs=34.3
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|+. +|..||||++... ..+.+..|.+++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~ 49 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIY 49 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHH
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHH
Confidence 3466678999999999999988 5899999998543 334566666655
No 195
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=99.11 E-value=1.1e-10 Score=118.16 Aligned_cols=99 Identities=11% Similarity=-0.042 Sum_probs=59.8
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCC-c-ccHHHHHHhhCCCCccccccccccCCcccccccHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSG-E-MTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMK 653 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~-~-~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~ 653 (690)
||...+..++.++|||||||+++||+||+.|+...... . ..+............ +.+....+ + .
T Consensus 184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~---~ 249 (296)
T 4hgt_A 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI-----EVLCKGYP------S---E 249 (296)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH-----HHHTTTSC------H---H
T ss_pred hHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchh-----hhhhccCC------H---H
Confidence 77777778899999999999999999999998753321 1 111111111110000 00001111 2 4
Q ss_pred HHHHHhcch----------HHHHHHHHhhhhhhhccCCccccCCC
Q 042662 654 VIDANLLTR----------EDNYFMTKEQRVSLVFNSAMERTVES 688 (690)
Q Consensus 654 ~~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~~~~~~ 688 (690)
+.++...|. .+++++|+++..........+..++.
T Consensus 250 l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~~~~~~~~dw~~ 294 (296)
T 4hgt_A 250 FATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGFSYDYVFDWNM 294 (296)
T ss_dssp HHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHTCCTTCCCGGGG
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCccCccchhh
Confidence 455556666 89999999998877765554444443
No 196
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.11 E-value=2.6e-11 Score=122.41 Aligned_cols=50 Identities=32% Similarity=0.466 Sum_probs=37.4
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
+|...+.||+|+||+||+|+.. +|+.||||++..... ...+.|.+|++++
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il 57 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKAL 57 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 3555688999999999999864 689999999865433 3356788999887
No 197
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.10 E-value=2.8e-10 Score=117.99 Aligned_cols=93 Identities=9% Similarity=0.056 Sum_probs=58.4
Q ss_pred HhcccCC------cccccceEEehhHHHHHHhcC----------CCCCCccCCCcccHHHHHHhhCCCCccccccccccC
Q 042662 576 KQYGREG------RVSTNGDVYSFGIMLMETFTR----------KKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLS 639 (690)
Q Consensus 576 pe~~~~~------~~~~k~DvysfGv~llel~tg----------~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~ 639 (690)
||...+. ..+.++|||||||+++||+|| +.|+............+........ ..+.+..
T Consensus 220 PE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 295 (342)
T 1b6c_B 220 PEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQK----LRPNIPN 295 (342)
T ss_dssp HHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSC----CCCCCCG
T ss_pred HhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcccHHHHHHHHHHHH----hCCCCcc
Confidence 6665444 344789999999999999999 5666543333334445544433221 1222221
Q ss_pred CcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhhhh
Q 042662 640 QEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRVSL 676 (690)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~~~ 676 (690)
... ..+....+.++...|+ .+|++.|+++.+..
T Consensus 296 ~~~----~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 296 RWQ----SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp GGG----TSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred ccc----chhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 111 1156667888888888 89999999887654
No 198
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.10 E-value=7e-11 Score=119.91 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=41.7
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|...+.||+|+||+||+|.. .+|..||||++........+.+.+|+..+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l 71 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVM 71 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHH
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHH
Confidence 3466678899999999999985 46899999999766655667788888877
No 199
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.10 E-value=3.7e-11 Score=122.88 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=35.7
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDM 574 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~ 574 (690)
++|...+.||+|+||+||+|... +|+.||||++..... ....++..|+..
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~ 109 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGS 109 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHH
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHH
Confidence 34666788999999999999986 689999999855332 223344455443
No 200
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.09 E-value=6.5e-11 Score=121.90 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=40.0
Q ss_pred CCcccEecccCceeEEEEEe-----CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARI-----HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l-----~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.+ .+|..||||++........+.|.+|++.+
T Consensus 43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l 96 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 96 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHH
T ss_pred ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHH
Confidence 34457899999999999984 36899999999876655667899999887
No 201
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.09 E-value=9.3e-11 Score=117.09 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=38.2
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|+. +|..||||++.... ....+.|.+|++.+
T Consensus 11 ~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l 61 (271)
T 3kmu_A 11 QLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRL 61 (271)
T ss_dssp GCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGG
T ss_pred HhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHH
Confidence 344557899999999999998 58899999986543 23356788888776
No 202
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=99.09 E-value=1.3e-10 Score=117.46 Aligned_cols=48 Identities=29% Similarity=0.594 Sum_probs=37.3
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|+..+ .||||++.... ....+.|.+|++.+
T Consensus 25 ~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l 74 (289)
T 3og7_A 25 QITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVL 74 (289)
T ss_dssp SCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHH
T ss_pred ceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHH
Confidence 46666889999999999998743 59999986543 23456789999887
No 203
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.09 E-value=1.4e-10 Score=115.79 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=39.7
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...++..||||++..... ..++|.+|++.+
T Consensus 9 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 57 (268)
T 3sxs_A 9 EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTM 57 (268)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHH
T ss_pred heeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHH
Confidence 3445578999999999999998888999999976543 356788888877
No 204
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.09 E-value=2.9e-10 Score=114.68 Aligned_cols=89 Identities=11% Similarity=0.050 Sum_probs=57.1
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCccCCCcccHHHHHHhhCCCCccccccccccCCcccccccHHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLSQEDKHFTTKEQFMKV 654 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~~~~~~~~~~~~~~~~ 654 (690)
||...+..++.++|||||||+++||+| |+.|+.... ...+..++..... +......+ . .+
T Consensus 182 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~--~~~~~~~i~~~~~--------~~~~~~~~------~---~l 242 (287)
T 1u59_A 182 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK--GPEVMAFIEQGKR--------MECPPECP------P---EL 242 (287)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC--THHHHHHHHTTCC--------CCCCTTCC------H---HH
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC--HHHHHHHHhcCCc--------CCCCCCcC------H---HH
Confidence 777777888999999999999999999 999986432 2223333322110 11111111 2 34
Q ss_pred HHHHhcch----------HHHHHHHHhhhhhhhccCCcc
Q 042662 655 IDANLLTR----------EDNYFMTKEQRVSLVFNSAME 683 (690)
Q Consensus 655 ~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~ 683 (690)
.++...|+ .++++.|+++..+......++
T Consensus 243 ~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~ 281 (287)
T 1u59_A 243 YALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGH 281 (287)
T ss_dssp HHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCC
Confidence 45555666 899999999987776655544
No 205
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.09 E-value=1.8e-10 Score=116.22 Aligned_cols=51 Identities=35% Similarity=0.498 Sum_probs=39.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccch-------HHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGA-------FKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~-------~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|+.. ++..||||++....... .+.|.+|++.+
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l 77 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIM 77 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHH
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHH
Confidence 44556688999999999999974 68999999985433211 26788888877
No 206
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.08 E-value=1.2e-10 Score=128.16 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=40.2
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...++..||||++..... ..++|.+|++++
T Consensus 268 ~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 316 (535)
T 2h8h_A 268 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVM 316 (535)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHH
T ss_pred hhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHH
Confidence 3445578999999999999998888899999976543 356799999887
No 207
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.08 E-value=8.7e-11 Score=121.97 Aligned_cols=57 Identities=26% Similarity=0.258 Sum_probs=43.0
Q ss_pred hhHhhhccCCCCcccEecccCceeEEEEEeC----CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 517 YLELFQATNGFSENNLIGRGGFGSVYKARIH----DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 517 ~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~----~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|+++....+.|.-.+.||+|+||+||+|+.. .++.||||++.... ....+.+|++++
T Consensus 13 ~~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l 73 (361)
T 4f9c_A 13 YEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCL 73 (361)
T ss_dssp HHHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHH
T ss_pred HHhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHH
Confidence 3444556677888899999999999999742 46789999986543 345678888877
No 208
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=99.08 E-value=9.6e-11 Score=119.50 Aligned_cols=49 Identities=31% Similarity=0.546 Sum_probs=37.1
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|... ..+|||.++... ....+.|.+|++.+
T Consensus 36 ~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l 86 (307)
T 3lb7_A 36 SEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVL 86 (307)
T ss_dssp TSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHH
T ss_pred cceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34556688999999999999874 358999886533 23456788999887
No 209
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.08 E-value=2.1e-10 Score=115.42 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=37.0
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|...++..||||++..... ..++|.+|++.+
T Consensus 25 ~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 73 (283)
T 3gen_A 25 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVM 73 (283)
T ss_dssp GEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHH
T ss_pred HHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHH
Confidence 3445578999999999999998888999999976543 356788998887
No 210
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.08 E-value=1.4e-10 Score=121.42 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=37.5
Q ss_pred CCCcccEecccCceeEEEEEeC------CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|++. ++..||||++.... .....+|.+|+.++
T Consensus 72 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 128 (367)
T 3l9p_A 72 NITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 128 (367)
T ss_dssp GEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHH
Confidence 3555578999999999999963 46789999986543 33455688888776
No 211
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=99.08 E-value=8.8e-11 Score=119.17 Aligned_cols=97 Identities=9% Similarity=-0.039 Sum_probs=57.9
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCccCCCc-ccHHHHHHhh-CCCCccccccccccCCcccccccHHHHHH
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGE-MTLKRWVNDF-LPISVMEVVDTNLLSQEDKHFTTKEQFMK 653 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~-~~l~~~~~~~-~~~~~~~~~D~~l~~~~~~~~~~~~~~~~ 653 (690)
||...+..++.++|||||||+++||+||+.|+....... ......+... ..... +.+....+ + .
T Consensus 187 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------~---~ 252 (298)
T 1csn_A 187 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPL-----RELCAGFP------E---E 252 (298)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCH-----HHHTTTSC------H---H
T ss_pred chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccH-----HHHHhhCc------H---H
Confidence 777777788999999999999999999999987532211 1111111100 00000 01111111 2 3
Q ss_pred HHHHHhcch----------HHHHHHHHhhhhhhhccCCccccC
Q 042662 654 VIDANLLTR----------EDNYFMTKEQRVSLVFNSAMERTV 686 (690)
Q Consensus 654 ~~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~~~~ 686 (690)
+.++...|. .++++.|+++..........+..|
T Consensus 253 l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~~~~~~dw 295 (298)
T 1csn_A 253 FYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTTEDENFDW 295 (298)
T ss_dssp HHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCCSCSCCGG
T ss_pred HHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 445556666 899999999988776655444333
No 212
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.07 E-value=7e-11 Score=132.52 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=36.0
Q ss_pred cEecccCceeEEEEEeC---CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 531 NLIGRGGFGSVYKARIH---DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 531 ~~ig~g~~g~vy~~~l~---~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
+.||+|+||.||+|.+. .+..||||+++.... ...++|.+|++++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il 424 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM 424 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHH
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHH
Confidence 57999999999999763 467899999976432 3357899999887
No 213
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=3.1e-10 Score=117.12 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=30.6
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...++.++.++|||||||+++||+| |+.|+..
T Consensus 219 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~ 253 (333)
T 1mqb_A 219 PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWE 253 (333)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred chhcccCCCCchhhhHHHHHHHHHHHcCCCCCccc
Confidence 777778889999999999999999999 9999853
No 214
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.07 E-value=7.7e-11 Score=123.56 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=31.0
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+| |+.|+..
T Consensus 274 PE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~ 308 (370)
T 2psq_A 274 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG 308 (370)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 888888889999999999999999999 9998764
No 215
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.07 E-value=2.3e-10 Score=113.99 Aligned_cols=48 Identities=23% Similarity=0.211 Sum_probs=39.2
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|...++..||||++..... ..+.|.+|++.+
T Consensus 10 y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l 57 (267)
T 3t9t_A 10 LTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVM 57 (267)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHH
T ss_pred eeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHH
Confidence 444578999999999999998889999999976543 346788888877
No 216
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.06 E-value=5.4e-11 Score=123.49 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...++..||||++.... ....+.|.+|++.+
T Consensus 10 ~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 61 (343)
T 3dbq_A 10 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL 61 (343)
T ss_dssp EEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHH
Confidence 355668899999999999999889999999986443 23356788888877
No 217
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.06 E-value=6.3e-10 Score=115.00 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=28.9
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecc
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDL 559 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~ 559 (690)
+.|.-.+.||+|+||.||+|+.. |..||||++..
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~ 70 (337)
T 3mdy_A 37 KQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFT 70 (337)
T ss_dssp HHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEG
T ss_pred cceEEEeEeecCCCeEEEEEEEC-CceEEEEEEec
Confidence 45667789999999999999984 89999998743
No 218
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=5e-10 Score=113.57 Aligned_cols=47 Identities=28% Similarity=0.461 Sum_probs=35.7
Q ss_pred cccEecccCceeEEEEEeCC----CcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIHD----GMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~~----~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
..+.||+|+||.||+|...+ +..||||++..... ...+.|.+|++.+
T Consensus 25 ~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l 76 (298)
T 3pls_A 25 SDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLM 76 (298)
T ss_dssp EEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHH
T ss_pred cCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHH
Confidence 44789999999999998632 23799999875443 3456788998877
No 219
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.05 E-value=2.7e-10 Score=113.82 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=36.2
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEeccccc----chHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYR----GAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~----~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.. .|..||||++..... ...+.|.+|++.+
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l 60 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLF 60 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHH
T ss_pred hheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHH
Confidence 3466668899999999999998 588999999865432 2346788888776
No 220
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.05 E-value=1.5e-10 Score=118.68 Aligned_cols=50 Identities=26% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCCcccEecccCceeEEEEEe-CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||++.. .+|+.||||++........+.|.+|++.+
T Consensus 30 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l 80 (317)
T 2buj_A 30 HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMH 80 (317)
T ss_dssp EEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 455668899999999999997 57899999998665555566788888776
No 221
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.05 E-value=3.5e-10 Score=113.72 Aligned_cols=52 Identities=25% Similarity=0.362 Sum_probs=38.8
Q ss_pred cCCCCcccEecccCceeEEEEEeCC----CcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIHD----GMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~~----~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
.++|.-.+.||+|+||.||+|+..+ +..||||++.... ....+.|.+|++.+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 67 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIM 67 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHH
Confidence 3456666889999999999998643 3469999987653 23456788898877
No 222
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.04 E-value=3.1e-10 Score=117.68 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=40.7
Q ss_pred HhhhccCCCCcccEecccCceeEEEEEeC------CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 519 ELFQATNGFSENNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 519 ~l~~at~~f~~~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
++....++|.-.+.||+|+||.||+|... ++..||||++..... ...+.|.+|++.+
T Consensus 41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 104 (343)
T 1luf_A 41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM 104 (343)
T ss_dssp HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHH
Confidence 33445567777789999999999999984 348899999865432 2344566676655
No 223
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.04 E-value=2.8e-10 Score=114.21 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=39.7
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...++..||||++..... ..+.|.+|++.+
T Consensus 14 ~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 62 (279)
T 1qpc_A 14 TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLM 62 (279)
T ss_dssp GEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHH
T ss_pred hhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHH
Confidence 3455578999999999999998888999999975432 356788888877
No 224
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.04 E-value=1.1e-10 Score=128.95 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=41.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|..||||++........+.+.+|++++
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il 208 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM 208 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHH
Confidence 45666678999999999999974 6899999999765555566788899887
No 225
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.04 E-value=1.7e-10 Score=120.59 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=50.5
Q ss_pred cchhhHhhhccCCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccc-----------hHHHHHHHHHHH
Q 042662 514 RFTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRG-----------AFKSFDIECDMM 575 (690)
Q Consensus 514 ~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~-----------~~~~f~~e~~~~ 575 (690)
+...+++...++.|.-.+.||+|+||.||+|...+|..||||++...... ..+.|.+|++++
T Consensus 11 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 83 (362)
T 3pg1_A 11 RDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLL 83 (362)
T ss_dssp HHHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHH
Confidence 34567888889999999999999999999999888999999998543221 136788898877
No 226
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.04 E-value=3.8e-10 Score=114.24 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=38.2
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|... ++..||||++.... ....+.|.+|++.+
T Consensus 12 ~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l 65 (294)
T 4eqm_A 12 RYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNS 65 (294)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHH
Confidence 3555678999999999999864 68999999985433 22346788898877
No 227
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.04 E-value=6.6e-11 Score=119.48 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=40.8
Q ss_pred ccCCCCcccEecccCceeEEEEEeCC-CcEEEEEEecccccchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
..++|...+.||+|+||.||+|+... +..||||++.... ...+.|.+|++.+
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l 63 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVM 63 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHH
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHH
Confidence 34456666889999999999999864 7899999987543 3456788888877
No 228
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.03 E-value=1.9e-10 Score=117.59 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.|...+.||+|+||+||+|...+|..||||++.... ....+.+.+|++++
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 73 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLL 73 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHH
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHH
Confidence 4455668899999999999999889999999986543 22346788898877
No 229
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.02 E-value=2.9e-10 Score=114.08 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=36.0
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|.. .|..||||++.... ..+.|.+|++.+
T Consensus 22 ~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l 68 (278)
T 1byg_A 22 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVM 68 (278)
T ss_dssp GEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHH
T ss_pred hceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHH
Confidence 345558899999999999998 58899999986543 345677887776
No 230
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=121.84 Aligned_cols=47 Identities=23% Similarity=0.378 Sum_probs=34.4
Q ss_pred cccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
..+.||+|+||.||+|... +|..||||++........++|.+|++++
T Consensus 93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l 140 (373)
T 2x4f_A 93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVM 140 (373)
T ss_dssp EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHH
Confidence 3467999999999999874 6899999999776555667899999888
No 231
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.02 E-value=4.1e-10 Score=118.63 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCC
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTD 608 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~ 608 (690)
||+..+..++.++|||||||+++||+| |+.|+.
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~ 295 (382)
T 3tt0_A 262 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP 295 (382)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence 888888889999999999999999999 999875
No 232
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.02 E-value=1.6e-10 Score=118.97 Aligned_cols=53 Identities=26% Similarity=0.368 Sum_probs=41.7
Q ss_pred ccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
..++|.-.+.||+|+||.||+|.. .+|..||||++.... ....+.+.+|++++
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 68 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIM 68 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHH
Confidence 345677778999999999999997 578999999996543 23456688898887
No 233
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.02 E-value=8.4e-11 Score=124.62 Aligned_cols=62 Identities=26% Similarity=0.388 Sum_probs=47.6
Q ss_pred cchhhHhhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 514 RFTYLELFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 514 ~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.+.+.+....+++|...+.||+|+||.||++... +|+.||||++.... ....+.|.+|.+++
T Consensus 50 ~~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il 115 (412)
T 2vd5_A 50 VVRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVL 115 (412)
T ss_dssp HHHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHH
Confidence 3566777778889999999999999999999985 68999999986422 12233467777666
No 234
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=99.02 E-value=2.3e-10 Score=123.66 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=31.6
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCcc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV 610 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~ 610 (690)
||+..+..++.++|||||||+++||+||+.|+...
T Consensus 182 PE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~ 216 (483)
T 3sv0_A 182 VNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGL 216 (483)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccc
Confidence 77777888899999999999999999999998754
No 235
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=99.01 E-value=5.7e-10 Score=115.28 Aligned_cols=101 Identities=10% Similarity=-0.063 Sum_probs=56.0
Q ss_pred HhcccC-------CcccccceEEehhHHHHHHhcCCCCCCccCCCcc-------------cHHHHHHhhCCCCccccccc
Q 042662 576 KQYGRE-------GRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEM-------------TLKRWVNDFLPISVMEVVDT 635 (690)
Q Consensus 576 pe~~~~-------~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~-------------~l~~~~~~~~~~~~~~~~D~ 635 (690)
||...+ ..++.++|||||||+++||+||+.|......... ...++........ ..+
T Consensus 197 PE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 272 (336)
T 3g2f_A 197 PEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREK----QRP 272 (336)
T ss_dssp HHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSC----CCC
T ss_pred chhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccc----cCC
Confidence 666554 4566789999999999999999887543221100 0111111111110 111
Q ss_pred cccCCcccccccHHHHHHHHHHHhcch----------HHHHHHHHhhhhhhhccCCcc
Q 042662 636 NLLSQEDKHFTTKEQFMKVIDANLLTR----------EDNYFMTKEQRVSLVFNSAME 683 (690)
Q Consensus 636 ~l~~~~~~~~~~~~~~~~~~~~al~C~----------~~v~~~L~~~~~~~~~~~~~~ 683 (690)
.+...... .......+.++...|+ .||+++|+++...+.+....+
T Consensus 273 ~~~~~~~~---~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~~~~ 327 (336)
T 3g2f_A 273 KFPEAWKE---NSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNKSVS 327 (336)
T ss_dssp CCCTTCCC---CSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-----
T ss_pred CCCccccc---ccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcccCC
Confidence 11111110 1134556788888888 999999999998887766444
No 236
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.00 E-value=3.5e-11 Score=126.08 Aligned_cols=34 Identities=3% Similarity=-0.136 Sum_probs=31.2
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+||+.|...
T Consensus 254 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~ 287 (365)
T 3e7e_A 254 VEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVK 287 (365)
T ss_dssp HHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEE
T ss_pred hHHhcCCCCCccccHHHHHHHHHHHHhCCCcccc
Confidence 8888888899999999999999999999999753
No 237
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.00 E-value=2e-10 Score=118.09 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=37.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|..||||++..... ...+.|.+|+.++
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 59 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN 59 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHH
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHH
Confidence 45666688999999999999875 689999999865432 2245677888776
No 238
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=99.00 E-value=1.7e-10 Score=121.74 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=40.0
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|...+|..||||++.... ....+.|.+|++++
T Consensus 58 y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l 108 (390)
T 2zmd_A 58 YSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL 108 (390)
T ss_dssp EEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHH
Confidence 66678899999999999998889999999986443 23456788888876
No 239
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=99.00 E-value=1.2e-10 Score=119.16 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=45.2
Q ss_pred chhhHhhhccCCCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 515 FTYLELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 515 ~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.+..+....+.|.-.+.||+|+||.||+|...+|..||||++.... ....+.|.+|++.+
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 80 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYL 80 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHH
Confidence 44444444555677778999999999999999889999999986543 23456788888766
No 240
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.00 E-value=4.3e-10 Score=117.45 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+| |+.|+..
T Consensus 264 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~ 298 (359)
T 3vhe_A 264 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 298 (359)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred hhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCc
Confidence 777777888999999999999999999 9999864
No 241
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=119.26 Aligned_cols=53 Identities=23% Similarity=0.309 Sum_probs=40.7
Q ss_pred ccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
..+.|.-.+.||+|+||+||+|+. .+|..||||++..... .....+.+|++.+
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l 62 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEAL 62 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHH
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHH
Confidence 345677778999999999999986 4789999999865432 2345688888877
No 242
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=99.00 E-value=2.2e-10 Score=117.94 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=31.0
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...+..++.++|||||||+++||+| |+.|++.
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~ 222 (327)
T 3lzb_A 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDG 222 (327)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 787778889999999999999999999 9999864
No 243
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=98.99 E-value=1.4e-10 Score=122.85 Aligned_cols=60 Identities=27% Similarity=0.291 Sum_probs=45.5
Q ss_pred hhhHhhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 516 TYLELFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 516 ~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.+.++...+++|.-.+.||+|+||+||+|+.. +|..||||++.... ......|.+|++++
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il 123 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIM 123 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHH
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHH
Confidence 45667777888998999999999999999986 48899999985422 22234467777666
No 244
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=98.99 E-value=5.9e-10 Score=113.92 Aligned_cols=57 Identities=25% Similarity=0.430 Sum_probs=37.4
Q ss_pred HhhhccCCCCcccEecccCceeEEEEEeC----CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 519 ELFQATNGFSENNLIGRGGFGSVYKARIH----DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 519 ~l~~at~~f~~~~~ig~g~~g~vy~~~l~----~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
++....+.|.-.+.||+|+||.||+|... .+..||||++.... ....+.|.+|++.+
T Consensus 28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l 90 (313)
T 3brb_A 28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90 (313)
T ss_dssp TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHH
Confidence 33344455666788999999999999874 24589999986543 22345677777765
No 245
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=98.99 E-value=4.9e-10 Score=115.71 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=30.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||+..++.++.++|||||||+++||+| |+.|+..
T Consensus 228 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~ 262 (334)
T 2pvf_A 228 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPG 262 (334)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 777777888999999999999999999 9999763
No 246
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=98.99 E-value=3.5e-10 Score=115.55 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=30.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...++.++.++|||||||+++||+| |+.|+..
T Consensus 216 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~ 250 (313)
T 1t46_A 216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPG 250 (313)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTT
T ss_pred hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 787777889999999999999999999 9988764
No 247
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.2e-09 Score=111.33 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=39.7
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccc---hHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRG---AFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~---~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|+.||||++...... ..+.|.+|++.+
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l 88 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTA 88 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHH
Confidence 44666688999999999999975 6889999998654322 246788888877
No 248
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=98.98 E-value=3.1e-10 Score=117.06 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=39.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|+.||||++.... ......+.+|++++
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l 59 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL 59 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHH
Confidence 34666688999999999999975 58999999996532 23455678888777
No 249
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.98 E-value=5e-10 Score=117.36 Aligned_cols=47 Identities=38% Similarity=0.584 Sum_probs=35.0
Q ss_pred cccEecccCceeEEEEEeC--CC--cEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIH--DG--MEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~--~~--~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
-.+.||+|+||.||+|+.. ++ ..||||.+.... ....++|.+|+.++
T Consensus 93 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il 144 (373)
T 3c1x_A 93 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM 144 (373)
T ss_dssp EEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTS
T ss_pred cCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999974 22 468999986533 33456788888766
No 250
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=98.98 E-value=2.8e-10 Score=118.15 Aligned_cols=49 Identities=29% Similarity=0.444 Sum_probs=38.6
Q ss_pred CCcccEecccCceeEEEEEe-CCCcEEEEEEeccccc---chHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYR---GAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~---~~~~~f~~e~~~~ 575 (690)
|...+.||+|+||.||+|+. .+|..||||++..... ...+.|.+|++.+
T Consensus 56 y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l 108 (348)
T 1u5q_A 56 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 108 (348)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHH
T ss_pred eeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHH
Confidence 55668899999999999996 5789999999865432 2345788998877
No 251
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=98.98 E-value=3.2e-10 Score=114.41 Aligned_cols=49 Identities=31% Similarity=0.437 Sum_probs=39.4
Q ss_pred CCcccEecccCceeEEEEEeCC-C-------cEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHD-G-------MEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~-~-------~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.... + ..||||++........+.|.+|++.+
T Consensus 10 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l 66 (289)
T 4fvq_A 10 LIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMM 66 (289)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHH
T ss_pred eeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHH
Confidence 4455789999999999998753 2 57999999776666677899999887
No 252
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=98.98 E-value=3.8e-10 Score=115.89 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=43.3
Q ss_pred hhhHhhhccCCCCcccEecccCceeEEEEEeC------CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 516 TYLELFQATNGFSENNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 516 ~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
..++...+.+.|...+.||+|+||.||+|+.. .+..||||++..... .....|.+|++.+
T Consensus 16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 82 (322)
T 1p4o_A 16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82 (322)
T ss_dssp CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHG
T ss_pred ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHH
Confidence 33444555666777889999999999999864 367899999865432 2344677787766
No 253
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=98.98 E-value=2.9e-10 Score=114.75 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=39.4
Q ss_pred CCCcccEecccCceeEEEEEeCCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|...+|..||||++.... ....+.+.+|++.+
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l 54 (288)
T 1ob3_A 3 KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISIL 54 (288)
T ss_dssp SEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGG
T ss_pred cchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHH
Confidence 355567899999999999999889999999986543 22346788888877
No 254
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=98.98 E-value=7.7e-10 Score=113.20 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=41.7
Q ss_pred hHhhhccCCCCcccEecccCceeEEEEEe------CCCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 518 LELFQATNGFSENNLIGRGGFGSVYKARI------HDGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 518 ~~l~~at~~f~~~~~ig~g~~g~vy~~~l------~~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
.+..-..++|.-.+.||+|+||.||+|.. .+++.||||++..... ...+.|.+|++.+
T Consensus 20 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 84 (316)
T 2xir_A 20 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKIL 84 (316)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHH
Confidence 33334455677778999999999999984 3568999999865432 2345677777766
No 255
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=98.98 E-value=2.3e-10 Score=118.93 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=33.6
Q ss_pred ccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
..+.|...+.||+|+||.||+|+.. +++.||||++.... ..+.|.+|++++
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l 102 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVL 102 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHH
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHH
Confidence 3455666789999999999999986 47899999986543 234577777766
No 256
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=98.98 E-value=4.2e-10 Score=113.76 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=33.2
Q ss_pred EecccCceeEEEEEeC---CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 532 LIGRGGFGSVYKARIH---DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 532 ~ig~g~~g~vy~~~l~---~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.||+|+||.||+|... .+..||||++.... ....++|.+|++.+
T Consensus 24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l 72 (291)
T 1xbb_A 24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM 72 (291)
T ss_dssp EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHH
T ss_pred ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHH
Confidence 8999999999999652 46889999986543 22356788998887
No 257
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=98.97 E-value=8.8e-10 Score=110.75 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=37.4
Q ss_pred CCCcccEecccCceeEEEEEeCC----CcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIHD----GMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~~----~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|.... +..||||+..... ....+.|.+|+..+
T Consensus 16 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l 70 (281)
T 1mp8_A 16 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM 70 (281)
T ss_dssp GEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHH
T ss_pred HeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHH
Confidence 34455789999999999998743 4679999986543 23355788888877
No 258
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=98.97 E-value=2.8e-10 Score=125.23 Aligned_cols=36 Identities=47% Similarity=0.763 Sum_probs=30.9
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecc
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDL 559 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~ 559 (690)
.++|.-.++||+|+||+||+|+.. +|..||||++..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K 224 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK 224 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeH
Confidence 356777899999999999999975 589999999964
No 259
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.97 E-value=3.7e-10 Score=116.18 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=31.4
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||+..++.++.++|||||||+++||+| |+.|+..
T Consensus 186 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~ 220 (325)
T 3kex_A 186 LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAG 220 (325)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred hHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccc
Confidence 888888889999999999999999999 9999864
No 260
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=98.97 E-value=1.6e-10 Score=123.08 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=32.0
Q ss_pred hhhccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEec
Q 042662 520 LFQATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFD 558 (690)
Q Consensus 520 l~~at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~ 558 (690)
+...+..|...++||+|+||.||+|+. .+|+.||||++.
T Consensus 73 ~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~ 112 (413)
T 3dzo_A 73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY 112 (413)
T ss_dssp SSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred CCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEe
Confidence 334555677778999999999999995 468999999886
No 261
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.96 E-value=4.8e-10 Score=115.81 Aligned_cols=50 Identities=24% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|... +|..||||++........+.|.+|+..+
T Consensus 29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l 79 (337)
T 3ll6_A 29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFM 79 (337)
T ss_dssp EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHH
Confidence 4555688999999999999964 6899999998555444455677777655
No 262
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=98.96 E-value=4.4e-10 Score=113.75 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCCcccEecccCceeEEEEEe-CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.|....+||+|+||.||+|.. .++..||||++........+.|.+|+..+
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l 73 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALH 73 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHH
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHH
Confidence 355567899999999999996 46889999998766555567788888877
No 263
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=98.96 E-value=3.8e-10 Score=118.68 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=41.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|+.. +|..||+|++..........|.+|++++
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il 102 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIM 102 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHH
Confidence 34666688999999999999975 5889999998765544556788999888
No 264
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.96 E-value=4.1e-10 Score=116.08 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=35.9
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.. .+|..||||++..... .+.|..|++++
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l 58 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFY 58 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHH
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHH
Confidence 4566778999999999999995 5789999999864332 23466666655
No 265
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=98.96 E-value=6.4e-10 Score=112.99 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=36.2
Q ss_pred CCcccEecccCceeEEEEEe-----CCCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARI-----HDGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l-----~~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
|...+.||+|+||.||+|++ .+|..||||++.... ....+.|.+|++.+
T Consensus 23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 77 (302)
T 4e5w_A 23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEIL 77 (302)
T ss_dssp EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHH
T ss_pred hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHH
Confidence 34457899999999999984 368999999987543 23456788888877
No 266
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.95 E-value=3.7e-10 Score=119.02 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=40.6
Q ss_pred hHhhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 518 LELFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 518 ~~l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.+-...+++|...+.||+|+||.||+|... +|..||||++.... ...+++..|++.+
T Consensus 47 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l 104 (382)
T 2vx3_A 47 KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLL 104 (382)
T ss_dssp CTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHH
T ss_pred ecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHH
Confidence 333455677888899999999999999875 57899999986432 2234455555543
No 267
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=98.95 E-value=1.1e-09 Score=112.62 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=35.9
Q ss_pred CCCCcccEecccCceeEEEEEeC------CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH------DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~------~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|+.. ++..||||++.... .....+|..|+..+
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 87 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 87 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHH
Confidence 45666788999999999999852 46789999986443 33456788888776
No 268
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.94 E-value=6.2e-10 Score=112.43 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=30.1
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...+..++.++||||||++++||+| |+.|+..
T Consensus 193 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~ 227 (291)
T 1u46_A 193 PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG 227 (291)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred chhhcCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence 777777788999999999999999999 9999763
No 269
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=98.94 E-value=7.6e-10 Score=111.88 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=39.2
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|...+.||+|+||+||+|... +|..||||++.... ....+.+.+|++++
T Consensus 3 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 55 (292)
T 3o0g_A 3 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL 55 (292)
T ss_dssp SEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHH
T ss_pred CceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHH
Confidence 4555678999999999999975 58999999986543 23346788898877
No 270
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=98.94 E-value=2e-09 Score=111.07 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred hhccCCCCcccEecccCceeEEEEEeCC------CcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 521 FQATNGFSENNLIGRGGFGSVYKARIHD------GMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 521 ~~at~~f~~~~~ig~g~~g~vy~~~l~~------~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
.-..++|.-.+.||+|+||.||+|.... +..||||++..... ...+.|.+|++++
T Consensus 42 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 103 (333)
T 2i1m_A 42 EFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIM 103 (333)
T ss_dssp BCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHH
Confidence 3445667778899999999999999642 24799999865432 2345577777665
No 271
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=98.94 E-value=6.4e-10 Score=114.02 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.6
Q ss_pred CCcccEecccCceeEEEEEeCC-CcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.... |..||||++.... ....+.+.+|++++
T Consensus 11 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l 61 (319)
T 4euu_A 11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL 61 (319)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred EEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH
Confidence 4455789999999999999864 8999999997543 23456778888877
No 272
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.94 E-value=1.5e-09 Score=109.99 Aligned_cols=49 Identities=35% Similarity=0.522 Sum_probs=36.0
Q ss_pred CCcccEecccCceeEEEEEeCC----CcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHD----GMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~----~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|+..+ +..||||++..... ...+.|.+|++.+
T Consensus 27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l 80 (298)
T 3f66_A 27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM 80 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHH
T ss_pred hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHH
Confidence 3445789999999999999743 23689999875432 3456788898877
No 273
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=98.93 E-value=4.5e-10 Score=115.59 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=31.4
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++|||||||+++||+||+.|+..
T Consensus 190 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 223 (327)
T 3a62_A 190 PEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTG 223 (327)
T ss_dssp HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred HhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCC
Confidence 8888888899999999999999999999999863
No 274
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=98.93 E-value=3.5e-10 Score=117.50 Aligned_cols=51 Identities=27% Similarity=0.406 Sum_probs=38.1
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|+.. +|..||||++.... ......+..|.+++
T Consensus 23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il 77 (353)
T 3txo_A 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRIL 77 (353)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHH
T ss_pred hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHH
Confidence 45666789999999999999975 58999999986432 22344566777665
No 275
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=98.93 E-value=5.7e-10 Score=115.48 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=38.9
Q ss_pred ccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
..++|.-.+.||+|+||.||+|+.. +|+.||||++.... ......+..|.+++
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il 71 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL 71 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHH
Confidence 3456777789999999999999985 58999999986532 22344566666655
No 276
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=98.93 E-value=6.6e-10 Score=114.55 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=39.1
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|.. .+|..||||++.... ......+.+|++.+
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l 63 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYL 63 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHH
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHH
Confidence 3455668899999999999997 568999999986432 22345688888877
No 277
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.93 E-value=3.9e-10 Score=117.04 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=31.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCcc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV 610 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~ 610 (690)
||+..+..++.++|||||||+++||+||+.|++..
T Consensus 229 PE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 263 (345)
T 2v62_A 229 LDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN 263 (345)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 78877788999999999999999999999998643
No 278
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=98.93 E-value=4e-10 Score=115.22 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=30.2
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...+..++.++|||||||+++||+| |+.|+..
T Consensus 221 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 255 (314)
T 2ivs_A 221 IESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPG 255 (314)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred hhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 777777778999999999999999999 9999764
No 279
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=98.93 E-value=7.4e-10 Score=110.90 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=39.2
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|... +|..||||++.... ....+.+.+|++.+
T Consensus 8 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l 59 (276)
T 2yex_A 8 DWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN 59 (276)
T ss_dssp HEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHH
T ss_pred ceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHH
Confidence 3455578999999999999975 68999999986543 23456788888877
No 280
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.92 E-value=7.7e-10 Score=112.81 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=31.6
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...++.++.++|||||||+++||+||+.|+..
T Consensus 188 PE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 221 (308)
T 3g33_A 188 PEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCG 221 (308)
T ss_dssp HHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCC
T ss_pred chHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCC
Confidence 8888888999999999999999999999999864
No 281
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=98.92 E-value=5.6e-10 Score=114.85 Aligned_cols=63 Identities=29% Similarity=0.406 Sum_probs=46.2
Q ss_pred cccchhhHhhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 512 QKRFTYLELFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 512 ~~~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
...+++.++....+.|.-.+.||+|+||.||+|+.. +|..||||++..... ....+.+|++.+
T Consensus 11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l 74 (326)
T 2x7f_A 11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINML 74 (326)
T ss_dssp -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHH
T ss_pred chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHH
Confidence 345667778888888998999999999999999974 689999999864332 345667776655
No 282
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.92 E-value=6.1e-10 Score=119.10 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.6
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+||+.|+..
T Consensus 268 PE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~ 301 (429)
T 3kvw_A 268 PEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301 (429)
T ss_dssp HHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred hHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCC
Confidence 8988888999999999999999999999999763
No 283
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=98.92 E-value=4.1e-10 Score=115.02 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=38.2
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEeccccc---chHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYR---GAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~---~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|.. .+|+.||||++..... .....|.+|++.+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l 66 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNA 66 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 3455668899999999999996 5789999999965432 2234677777655
No 284
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=2e-07 Score=97.82 Aligned_cols=213 Identities=11% Similarity=0.061 Sum_probs=130.5
Q ss_pred CCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCC-------CCCcccCCCCCCCCCEEEccCCcCCCCCChhh
Q 042662 120 KLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTP-------KLSFLSSLSNCKYLEYFGFYNNPLGGILPRAI 192 (690)
Q Consensus 120 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~~ 192 (690)
+|+.+.+..+ ++......|.++.+++.+.+..+....... .......+..+..+..+.+.... .......+
T Consensus 136 ~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f 213 (379)
T 4h09_A 136 SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGF 213 (379)
T ss_dssp CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTT
T ss_pred eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeeccc
Confidence 4555554432 333445567777777777766543321110 00001223444555555544322 11222333
Q ss_pred hhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 042662 193 GNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALF 272 (690)
Q Consensus 193 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 272 (690)
.... .|+.+.+..+ +.......+.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +...-...|.++++|+
T Consensus 214 ~~~~-~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGK-NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCS-SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccc-ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 3333 6777777544 33334455677888888888765 55555677888888888888654 4434455788888999
Q ss_pred EEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCc
Q 042662 273 QLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFN 340 (690)
Q Consensus 273 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 340 (690)
.+.+.++.+......+|.++.+|+.+.|..+ ++.+.. +|.++.+|+.+.+..+ ++..-...|.++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 9999888888777788888899999988654 666654 5777888888888654 4433345565554
No 285
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=98.92 E-value=5.2e-10 Score=116.15 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=38.8
Q ss_pred CCCCcccEecccCceeEEEEEeCC-CcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.... |+.||||++.... ......+..|.+++
T Consensus 20 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l 74 (353)
T 2i0e_A 20 TDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL 74 (353)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHH
Confidence 456667899999999999999864 7899999986532 23345677777766
No 286
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=98.92 E-value=4.7e-10 Score=118.07 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=31.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+||+.|++.
T Consensus 222 PE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~ 255 (396)
T 4dc2_A 222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI 255 (396)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence 8888888899999999999999999999999864
No 287
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=98.92 E-value=1.2e-09 Score=110.05 Aligned_cols=51 Identities=10% Similarity=-0.115 Sum_probs=39.8
Q ss_pred CCCCcccEecccCceeEEEEEeCC-CcEEEEEEecccccc---hHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQYRG---AFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~~~---~~~~f~~e~~~~ 575 (690)
+.|.-...||+|+||.||+|.... |+.||||++...... ..+.|.+|++.+
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l 85 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRL 85 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHH
Confidence 345566889999999999999864 899999999765432 246788888877
No 288
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=98.92 E-value=8.3e-10 Score=114.50 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=30.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...++.++.++|||||||+++||+| |+.|+..
T Consensus 243 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~ 277 (344)
T 1rjb_A 243 PESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPG 277 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred HHHhccCCCChhHhHHHHHHHHHHHHcCCCCCccc
Confidence 787777889999999999999999999 9999864
No 289
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.6e-09 Score=114.65 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=38.7
Q ss_pred CCcccEecccCceeEEEEEeCC-CcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.... |..||||++.... ....+.+.+|++++
T Consensus 11 y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 61 (396)
T 4eut_A 11 WLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVL 61 (396)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHH
T ss_pred eEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHH
Confidence 4455789999999999999864 8999999997543 23456788888877
No 290
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=98.91 E-value=7.8e-10 Score=115.50 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=47.4
Q ss_pred ccccchhhHhhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 511 NQKRFTYLELFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 511 ~~~~~~~~~l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
....+++.+-....+.|.-.+.||+|+||.||+|+.. +|..||||++.... ...+.+..|++++
T Consensus 21 ~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l 85 (360)
T 3llt_A 21 EIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK-KYTRSAKIEADIL 85 (360)
T ss_dssp GGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH-HHHHHHHHHHHHH
T ss_pred cceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch-hhhhhhHHHHHHH
Confidence 3445677777777888998999999999999999974 68899999986422 2234455555554
No 291
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=98.91 E-value=7.2e-10 Score=113.46 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=37.4
Q ss_pred cEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 531 NLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 531 ~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++||+|+||.||+|... +|..||||++........+.+.+|++.+
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l 64 (316)
T 2ac3_A 19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEML 64 (316)
T ss_dssp CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHH
T ss_pred ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHH
Confidence 56999999999999854 6899999999766555567788898876
No 292
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=98.91 E-value=8.2e-10 Score=113.28 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=39.7
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.+.|.-.+.||+|+||.||+|+.. +|..||+|.+.... .....+.+|++++
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l 55 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISIL 55 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHH
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHH
Confidence 345666788999999999999975 57899999986542 3345688888877
No 293
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=98.91 E-value=9.4e-10 Score=114.60 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccc------hHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRG------AFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~------~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|+.. +|..||||.+...... ..+.|.+|++++
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il 69 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSIL 69 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHH
Confidence 34556688999999999999975 5899999998654321 346789999888
No 294
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=98.91 E-value=1e-09 Score=110.47 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=40.4
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
.++|.-.+.||+|+||.||+|... +|..||||++..... ...+.+.+|++++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l 59 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC 59 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHH
Confidence 355667788999999999999875 589999999865432 2345688888877
No 295
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.90 E-value=1.3e-09 Score=109.63 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=30.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCC
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTD 608 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~ 608 (690)
||...+..++.++|||||||+++||+||+.|..
T Consensus 190 PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~ 222 (284)
T 2a19_B 190 PEQISSQDYGKEVDLYALGLILAELLHVCDTAF 222 (284)
T ss_dssp HHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHH
T ss_pred hhhhccCCCcchhhhHHHHHHHHHHHhcCCcch
Confidence 888888889999999999999999999998854
No 296
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=98.90 E-value=9.8e-10 Score=111.79 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=36.3
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-...||+|+||.||+|... +|+.||||++........+.|.+|++.+
T Consensus 11 y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l 60 (304)
T 2jam_A 11 FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVL 60 (304)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHH
T ss_pred ceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHH
Confidence 445678999999999999975 6899999999765444456788888877
No 297
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=98.90 E-value=8.1e-10 Score=114.46 Aligned_cols=50 Identities=22% Similarity=0.306 Sum_probs=37.7
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc---chHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR---GAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~---~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+|+.. +|+.||||++..... ...+.+..|.+++
T Consensus 10 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l 63 (345)
T 3a8x_A 10 DFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVF 63 (345)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHH
T ss_pred heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHH
Confidence 4555688999999999999985 588999999965432 2344577777765
No 298
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=98.90 E-value=9.4e-10 Score=112.68 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=28.2
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++.... ....+.+.+|++++
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 57 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLM 57 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHH
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHH
Confidence 345666788999999999999875 58999999986543 22346678888877
No 299
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=98.90 E-value=8.4e-10 Score=112.95 Aligned_cols=50 Identities=26% Similarity=0.298 Sum_probs=37.9
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||+++.. +|+.||||++.... ....+.+.+|+.++
T Consensus 7 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l 60 (318)
T 1fot_A 7 DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML 60 (318)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred HcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHH
Confidence 4555688999999999999975 68999999986532 22345677777766
No 300
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=98.90 E-value=8.4e-10 Score=110.75 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=39.4
Q ss_pred ccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+.++|.-.+.||+|+||.||+|... ++..||||++.... ......+.+|++.+
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l 63 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 63 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHH
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHH
Confidence 3445666688999999999999875 46799999985432 22345688888777
No 301
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.90 E-value=2e-07 Score=97.77 Aligned_cols=298 Identities=10% Similarity=0.091 Sum_probs=138.7
Q ss_pred ccCCCCCCEEECcCCcccccCCcccCCCCCCCeeecccCcCcccCCccccCCCCCCEEecCCCCCCCCCEEeccCCccCc
Q 042662 30 IFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFNVSTLKSLYLHNVRLPNLEELLLWGNNFSG 109 (690)
Q Consensus 30 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~~~l~~L~~L~L~~n~l~~ 109 (690)
+....+|+.+.+... ++.+-..+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.
T Consensus 42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~----l~~---------- 104 (379)
T 4h09_A 42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER----VKK---------- 104 (379)
T ss_dssp GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT----CCE----------
T ss_pred cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce----eeE----------
Confidence 455667888877644 55555667888888888888644 553444556555 3444433221 222
Q ss_pred cCCccccCCCCCCeEecccCcccccCCccccCCCCCCEEEccCCcCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCC
Q 042662 110 TIPSFIFNASKLFTLGLEENSFSGFIPNTFGSLRNLEWLSLNDNYLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILP 189 (690)
Q Consensus 110 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p 189 (690)
++.......+|+.+.+..+ ++......|.++ +|+.+.+..+ +..... ..+..+..++.+.+..+.......
T Consensus 105 -I~~~aF~~~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~-----~~f~~~~~l~~~~~~~~~~~~~~~ 175 (379)
T 4h09_A 105 -FGDYVFQGTDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKD-----GIGYKAENLEKIEVSSNNKNYVAE 175 (379)
T ss_dssp -ECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECS-----CTTTTCTTCCEEEECTTCSSEEEE
T ss_pred -eccceeccCCcccccCCCc-cccccccccccc-eeeeeeccce-eecccc-----chhcccccccccccccccceeecc
Confidence 1222222346777777654 222334445554 4555554433 211110 334556666665554432211000
Q ss_pred hhhhhccccCcEEEeecCcccccCcccccCCCCCCEEECCCCcCcccchhhhcCCCCCCEEeCcCCcCcccCCccccCCC
Q 042662 190 RAIGNLSQSMEDFQMHNCNISGSIPEEISNLTNLIAIYLGRNKLNGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLA 269 (690)
Q Consensus 190 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 269 (690)
... .... .......+.....+..+.+....- ......+..+.+|+.+.+..+ +.......|.++.
T Consensus 176 ~~~----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~ 240 (379)
T 4h09_A 176 NYV----------LYNK---NKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMK 240 (379)
T ss_dssp TTE----------EEET---TSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCS
T ss_pred cce----------eccc---ccceecccccccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCc
Confidence 000 0000 001112233344455554443322 233445555666666666543 2223334555666
Q ss_pred CCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCcccc-cccccCCCceeeccCCcccCCCCCCccCCcccceeecc
Q 042662 270 ALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTSIPS-TLWNLKDILHLNLSSNSFTGPLPLKIGNFNVLIQLDLS 348 (690)
Q Consensus 270 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~p~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 348 (690)
.|+.+.+..+ ++.....+|..+.+|+.+.+.. .+..++. .+..+.+|+.+.+.++.++..-...|.++.+|+.+.|.
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 6666666544 4444445555666666665543 2333332 34444555555555444443333444444444444443
Q ss_pred ccccccccCccccCCCCCCeeec
Q 042662 349 MNNFSGVIPTKIGGLKDLQYLFL 371 (690)
Q Consensus 349 ~n~l~~~~~~~~~~l~~L~~L~L 371 (690)
.+ ++.....+|.+|.+|+.+.+
T Consensus 319 ~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 319 TA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TT-CCEECTTTTTTCTTCCCCCC
T ss_pred cc-ccEEHHHHhhCCCCCCEEEE
Confidence 22 33223334444444444444
No 302
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=98.90 E-value=8.1e-10 Score=114.66 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=38.8
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|...+.||+|+||.||+|+.. +|..||||++.... ....+.+.+|++++
T Consensus 42 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l 95 (350)
T 1rdq_E 42 QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95 (350)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred HCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHH
Confidence 4555688999999999999975 58999999986432 23356688888877
No 303
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.90 E-value=9.4e-10 Score=118.74 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=40.4
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l 115 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM 115 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHH
Confidence 456777789999999999999864 58999999996542 23356788888776
No 304
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=98.90 E-value=1e-09 Score=111.49 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=39.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|.-...||+|+||.||+|... +|..||||++........+.|.+|++.+
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l 70 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEIL 70 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHH
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 34555678999999999999986 4899999999776655667888998877
No 305
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=98.89 E-value=6.7e-10 Score=115.96 Aligned_cols=51 Identities=20% Similarity=0.430 Sum_probs=39.7
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|..||||++..... ...+.|.+|++++
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il 82 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARIC 82 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHH
T ss_pred cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence 34666688999999999999875 589999999965432 2345688898877
No 306
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.89 E-value=5.1e-10 Score=114.73 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=43.7
Q ss_pred CcccccceEEehhHHHHHHhcCCCCCCccCCCcccHHHHHHhhCCCCccccccccccC-CcccccccHHHHHHHHHHHhc
Q 042662 582 GRVSTNGDVYSFGIMLMETFTRKKPTDEVFSGEMTLKRWVNDFLPISVMEVVDTNLLS-QEDKHFTTKEQFMKVIDANLL 660 (690)
Q Consensus 582 ~~~~~k~DvysfGv~llel~tg~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~D~~l~~-~~~~~~~~~~~~~~~~~~al~ 660 (690)
..++.++|||||||+++||+||+.|++... .....+..... ..+.+.. ..+ . .+.++...
T Consensus 218 ~~~~~~~Di~slG~il~el~~g~~p~~~~~-----~~~~~~~~~~~-----~~~~~~~~~~~------~---~l~~li~~ 278 (319)
T 2y4i_B 218 LPFSKHSDVFALGTIWYELHAREWPFKTQP-----AEAIIWQMGTG-----MKPNLSQIGMG------K---EISDILLF 278 (319)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHSSCSSSSCC-----HHHHHHHHHTT-----CCCCCCCSSCC------T---THHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHhccC-----CCCCCCcCCCC------H---HHHHHHHH
Confidence 457899999999999999999999986321 11222221111 1111111 111 1 23445555
Q ss_pred ch----------HHHHHHHHhhhhhhhccCC
Q 042662 661 TR----------EDNYFMTKEQRVSLVFNSA 681 (690)
Q Consensus 661 C~----------~~v~~~L~~~~~~~~~~~~ 681 (690)
|+ .+++++|+.+.......+.
T Consensus 279 ~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~~~ 309 (319)
T 2y4i_B 279 CWAFEQEERPTFTKLMDMLEKLPKRNRRLSH 309 (319)
T ss_dssp HHCSSTTTSCCHHHHHHHHTTC---------
T ss_pred HhcCChhhCcCHHHHHHHHHHHHHhhccCCC
Confidence 66 8999999998877655443
No 307
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=98.89 E-value=1e-09 Score=111.53 Aligned_cols=50 Identities=26% Similarity=0.460 Sum_probs=39.4
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
.|...+.||+|+||.||+|+.. +|..||||++.... ....+.|.+|+..+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l 74 (303)
T 3a7i_A 23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVL 74 (303)
T ss_dssp TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHH
T ss_pred HHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHH
Confidence 3555688999999999999864 68999999986544 33456788888877
No 308
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=111.34 Aligned_cols=50 Identities=28% Similarity=0.310 Sum_probs=38.8
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
.|...+.||+|+||.||+|... +|..||||++..... ...+.|.+|++++
T Consensus 4 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 56 (311)
T 4agu_A 4 KYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRML 56 (311)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHH
T ss_pred cceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHH
Confidence 4556688999999999999985 489999999855432 2345688888877
No 309
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.89 E-value=1.2e-09 Score=112.55 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|.. .+|..||||++... ..+.+.+|++++
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l 84 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKIL 84 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHH
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHH
Confidence 3455668899999999999986 56899999998643 345677888766
No 310
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=98.89 E-value=1.3e-09 Score=112.04 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=38.7
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc------chHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR------GAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~------~~~~~f~~e~~~~ 575 (690)
|...+.||+|+||.||+|... +|..||||++..... ...+.|.+|++++
T Consensus 13 y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l 68 (326)
T 2y0a_A 13 YDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSIL 68 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHH
T ss_pred eEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHH
Confidence 555678999999999999975 589999999865432 1356788999887
No 311
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.89 E-value=2.1e-09 Score=110.65 Aligned_cols=49 Identities=29% Similarity=0.346 Sum_probs=35.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECD 573 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~ 573 (690)
++|.....||+|+||.||+|... +|..||||++..... ....++..|+.
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~ 72 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLD 72 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHH
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHH
Confidence 44556688999999999999985 689999999865432 23345556655
No 312
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=98.89 E-value=1.3e-09 Score=109.21 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=40.8
Q ss_pred CCcccEecccCceeEEEEEeCC-CcEEEEEEecccccchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|.... +..||+|++........+.|.+|++.+
T Consensus 11 y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l 60 (277)
T 3f3z_A 11 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIM 60 (277)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHH
T ss_pred EEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHH
Confidence 5556789999999999999754 678999999776666677899999887
No 313
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.89 E-value=1.4e-09 Score=112.60 Aligned_cols=53 Identities=25% Similarity=0.301 Sum_probs=38.1
Q ss_pred hccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc-cchHHHHHHHHHH
Q 042662 522 QATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY-RGAFKSFDIECDM 574 (690)
Q Consensus 522 ~at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~-~~~~~~f~~e~~~ 574 (690)
...++|.....||+|+||.||+|.. .+|..||||++.... .....++..|+..
T Consensus 48 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~ 102 (340)
T 3an0_A 48 VKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDI 102 (340)
T ss_dssp CCSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHH
T ss_pred EehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHH
Confidence 3445676778899999999999996 578999999986543 2233455555544
No 314
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=98.88 E-value=7.1e-10 Score=121.56 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=40.7
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.++|...++||+|+||.||+|... +|..||||++.... ......+.+|++++
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL 238 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQIL 238 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHH
Confidence 445777789999999999999985 68999999996532 23455688888877
No 315
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.88 E-value=6.3e-10 Score=114.40 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=31.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...++.++.++|||||||+++||+||+.|+..
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 221 (326)
T 1blx_A 188 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRG 221 (326)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCC
Confidence 8888888899999999999999999999999863
No 316
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=114.82 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=38.7
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|.-.+.||+|+||.||++... +|..||||++.... ....+.+.+|++++
T Consensus 16 ~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il 69 (384)
T 4fr4_A 16 HFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIM 69 (384)
T ss_dssp GEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred HeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHH
Confidence 3555688999999999999975 47899999986432 23456788888877
No 317
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=98.88 E-value=8.7e-10 Score=115.30 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=40.0
Q ss_pred hccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--------chHHHHHHHHHHH
Q 042662 522 QATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--------GAFKSFDIECDMM 575 (690)
Q Consensus 522 ~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--------~~~~~f~~e~~~~ 575 (690)
...+.|...+.||+|+||.||+|+.. +|..||||++..... ...+.|..|++.+
T Consensus 91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l 153 (365)
T 2y7j_A 91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHIL 153 (365)
T ss_dssp HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHH
Confidence 33455777789999999999999985 699999999865431 1134567777766
No 318
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=98.88 E-value=9.1e-10 Score=120.32 Aligned_cols=51 Identities=25% Similarity=0.527 Sum_probs=40.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|...++||+|+||.||+|+.. +|+.||||++.... ......+..|++++
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL 239 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKIL 239 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHH
Confidence 45777788999999999999985 58999999996433 23345678888777
No 319
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=98.88 E-value=9.7e-10 Score=112.57 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=35.3
Q ss_pred CCCCcccEecccCceeEEEEEeCC-CcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHD-GMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~-~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|...+.||+|+||.||+|.... |+.||||++........++|.+|++.+
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l 62 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKII 62 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHH
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHH
Confidence 345566889999999999999864 899999998765555566777887765
No 320
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=98.87 E-value=8.9e-10 Score=110.48 Aligned_cols=51 Identities=33% Similarity=0.646 Sum_probs=39.3
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|+. .+|..||||++.... ....+.|.+|++.+
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l 65 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIH 65 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHH
Confidence 3466668899999999999997 478999999986432 22346788888877
No 321
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.87 E-value=1.3e-09 Score=110.64 Aligned_cols=51 Identities=31% Similarity=0.459 Sum_probs=37.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
++|...+.||+|+||.||+|+.. +|..||||++.... ....+.+.+|++.+
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l 56 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL 56 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHH
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHH
Confidence 45666788999999999999975 68999999986543 22346678888777
No 322
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=98.87 E-value=1.2e-09 Score=109.70 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc------chHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR------GAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~------~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|... +|..||||.+..... ...+.|.+|++.+
T Consensus 7 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l 62 (283)
T 3bhy_A 7 YEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNIL 62 (283)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHH
T ss_pred hhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHH
Confidence 445578999999999999986 589999999865431 1356788998877
No 323
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=110.79 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=27.6
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccc
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQ 560 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~ 560 (690)
++|.-.+.||+|+||.||+|... +|+.||||++...
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 49 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKK 49 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence 45666688999999999999864 5889999998543
No 324
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=98.87 E-value=1.5e-09 Score=108.67 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=30.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
++|.-.+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++.+
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l 67 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYL 67 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHH
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHH
Confidence 45666788999999999999864 68999999986543 22355788888876
No 325
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.87 E-value=1.1e-09 Score=114.48 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=36.6
Q ss_pred ccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
..+.|...+.||+|+||.||+|.. .+|..||||++.... ....+.+.+|++.+
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 82 (367)
T 2fst_X 27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL 82 (367)
T ss_dssp EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH
Confidence 345677778999999999999985 468999999986532 22356678888776
No 326
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.87 E-value=1.3e-09 Score=114.12 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred hccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 522 QATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 522 ~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
...+.|...+.||+|+||.||+|... ++..||||++..... ...+.|.+|++++
T Consensus 24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 79 (364)
T 3qyz_A 24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKIL 79 (364)
T ss_dssp CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHH
Confidence 44556777789999999999999864 688999999975432 2346788888877
No 327
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=98.86 E-value=1.2e-09 Score=113.59 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=37.7
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-----cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-----RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-----~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|... +|+.||||++.... ....+.|.+|++++
T Consensus 26 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l 80 (351)
T 3c0i_A 26 YELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASIC 80 (351)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHH
T ss_pred eEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHH
Confidence 444578999999999999874 68999999985432 12356788888877
No 328
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=98.86 E-value=1.6e-09 Score=111.39 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=25.9
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+..++.++|||||||+++||+||+.|+..
T Consensus 178 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~ 211 (325)
T 3kn6_A 178 PELLNQNGYDESCDLWSLGVILYTMLSGQVPFQS 211 (325)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred HHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence 8888888899999999999999999999999864
No 329
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.86 E-value=5.7e-10 Score=117.33 Aligned_cols=35 Identities=14% Similarity=0.089 Sum_probs=29.6
Q ss_pred cCCCCcccEecccCceeEEEEEe-CCCcEEEEEEec
Q 042662 524 TNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFD 558 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~ 558 (690)
.+.|...+.||+|+||.||+|+. .+|+.||||++.
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~ 107 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPY 107 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEe
Confidence 45566678999999999999996 468999999985
No 330
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.86 E-value=1.7e-09 Score=113.35 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=39.8
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++.... ....+.+.+|+..+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 78 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLM 78 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHH
Confidence 356777789999999999999864 58899999986532 22345677888776
No 331
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.86 E-value=2e-09 Score=110.82 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=36.1
Q ss_pred cEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 531 NLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 531 ~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
+.||+|+||.||+|... +|..||||++..... ....++.+|+..+
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l 82 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVL 82 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHH
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHH
Confidence 67999999999999875 589999999865432 2356788888776
No 332
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=98.86 E-value=2e-09 Score=110.43 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=38.6
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccccc------hHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRG------AFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~------~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||+|... +|..||||++...... ..++|.+|++.+
T Consensus 14 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l 69 (321)
T 2a2a_A 14 YDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSIL 69 (321)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHH
T ss_pred EEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHH
Confidence 555678999999999999975 5899999998654321 356788999877
No 333
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=98.85 E-value=1.1e-09 Score=114.37 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=39.1
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
+|...+.||+|+||.||+|... +|..||||++.... ....+.|.+|++.+
T Consensus 34 ~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l 85 (360)
T 3eqc_A 34 DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL 85 (360)
T ss_dssp GEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGG
T ss_pred cceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHH
Confidence 4666688999999999999985 58999999986543 23346688888766
No 334
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.85 E-value=1.3e-09 Score=123.01 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=39.0
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.++|.-.++||+|+||.||+|... +|+.||||++.... ......+..|.+++
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l 395 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVL 395 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHH
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHH
Confidence 345777789999999999999975 57899999986432 23345567777666
No 335
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.85 E-value=1.4e-09 Score=113.83 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.0
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++.... ....+.+.+|++.+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 78 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL 78 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHH
Confidence 455667788999999999999974 68999999985432 22345678888777
No 336
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=98.85 E-value=1.6e-09 Score=111.62 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=37.5
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccccc--hHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRG--AFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~--~~~~f~~e~~~~ 575 (690)
|.....||+|+||.||+|... +|..||||++...... ..+.+.+|++.+
T Consensus 27 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 78 (331)
T 4aaa_A 27 YENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLL 78 (331)
T ss_dssp EEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHH
T ss_pred heeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHH
Confidence 445578999999999999985 4899999998554322 245677888777
No 337
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=98.85 E-value=5.1e-10 Score=115.03 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=29.8
Q ss_pred HhcccC-CcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGRE-GRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~-~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+ ..++.++|||||||+++||+||+.|+..
T Consensus 169 PE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~ 203 (324)
T 3mtl_A 169 PDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPG 203 (324)
T ss_dssp HHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred hhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 787665 5679999999999999999999999864
No 338
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=98.85 E-value=6.4e-10 Score=115.84 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.8
Q ss_pred HhcccC--CcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGRE--GRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~--~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+ ..++.++|||||||+++||+||+.|+..
T Consensus 229 PE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~ 264 (355)
T 1vzo_A 229 PDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV 264 (355)
T ss_dssp HHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred hhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence 787765 3478999999999999999999999864
No 339
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.85 E-value=2.1e-09 Score=112.75 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=40.1
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++..... ...+.+.+|++.+
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 95 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL 95 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHH
Confidence 456667788999999999999864 589999999965432 2346678888776
No 340
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=98.84 E-value=1.6e-09 Score=108.92 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=38.2
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|.-...||+|+||.||+|... ++..||||++.... ....+.|.+|++.+
T Consensus 15 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l 68 (284)
T 2vgo_A 15 DFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQ 68 (284)
T ss_dssp GEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred hceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHH
Confidence 4555688999999999999975 57889999985432 22346788888877
No 341
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=110.31 Aligned_cols=50 Identities=28% Similarity=0.414 Sum_probs=34.5
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++.... ..++|.+|++.+
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l 78 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIM 78 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHH
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHH
Confidence 344666788999999999999986 48999999986543 345688888777
No 342
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.84 E-value=4.5e-09 Score=108.12 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhc-CCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFT-RKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~t-g~~p~~~ 609 (690)
||...+..++.++|||||||+++||+| |+.|+..
T Consensus 210 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~ 244 (327)
T 1fvr_A 210 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG 244 (327)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred hhhhccccCCchhcchHHHHHHHHHHcCCCCCCCC
Confidence 787777788999999999999999999 9999863
No 343
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=98.83 E-value=7.2e-10 Score=119.35 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=31.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..++.++.++|||||||+++||+||+.|+..
T Consensus 318 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~ 351 (446)
T 4ejn_A 318 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN 351 (446)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCC
Confidence 8888889999999999999999999999999853
No 344
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=98.83 E-value=2e-09 Score=113.70 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=38.8
Q ss_pred CCCcccEeccc--CceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRG--GFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g--~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+| +||.||+|+.. +|..||||++.... ....+.|.+|++++
T Consensus 26 ~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 80 (389)
T 3gni_B 26 CYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVS 80 (389)
T ss_dssp GEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred cEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHH
Confidence 34455789999 99999999986 68999999996543 22345677888877
No 345
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=98.83 E-value=2e-09 Score=108.91 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
|...+.||+|+||.||+|... ++..||+|++.... ....+.|.+|++.+
T Consensus 17 y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l 69 (294)
T 2rku_A 17 YVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH 69 (294)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHH
Confidence 445688999999999999986 47899999986543 22355688888877
No 346
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.83 E-value=4.4e-09 Score=118.34 Aligned_cols=51 Identities=24% Similarity=0.242 Sum_probs=38.0
Q ss_pred CCCCcccEecccCceeEEEEEeCC----CcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHD----GMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~----~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|.... +..||||++..... ...+.|.+|+..+
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 445 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTM 445 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHH
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 345556789999999999999742 56799999865432 3346788898877
No 347
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=98.83 E-value=2e-09 Score=111.63 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=35.3
Q ss_pred ccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccc-----hHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRG-----AFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~-----~~~~f~~e~~~~ 575 (690)
..+.|.....||+|+||.||+|+.. +|..||||++...... ..+.+.+|++++
T Consensus 8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l 66 (346)
T 1ua2_A 8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLL 66 (346)
T ss_dssp -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHH
T ss_pred HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHH
Confidence 3456777789999999999999985 5899999998643321 234678888877
No 348
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=1.8e-09 Score=111.80 Aligned_cols=154 Identities=21% Similarity=0.210 Sum_probs=80.1
Q ss_pred ccCCCCCCEEEeeCCcCcccCcccccCCCCCCeeeCCCCccCc-ccccc--cccCCCceeeccC--CcccCC-----CCC
Q 042662 265 LCGLAALFQLDLGGNKLCGFIPACSGNLTNLRKLYLGSNQLTS-IPSTL--WNLKDILHLNLSS--NSFTGP-----LPL 334 (690)
Q Consensus 265 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~p~~~--~~~~~L~~L~L~~--n~l~~~-----~~~ 334 (690)
+..+|+|+.|+|++|.-. .++. +. +++|+.|++..|.+.. ....+ ..+++|+.|+|+. |...+. +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344555555555554211 1111 22 4556666665555443 11111 1455666666532 111111 001
Q ss_pred Cc--cCCcccceeeccccccccccCccc---cCCCCCCeeeccCcccccc----CCcccCCCCCCCEEECcCCcCcccCC
Q 042662 335 KI--GNFNVLIQLDLSMNNFSGVIPTKI---GGLKDLQYLFLEYNRLQGS----IPNSIGDLISLKSLNLSNNNLSGTIP 405 (690)
Q Consensus 335 ~~--~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~p 405 (690)
.+ ..+++|+.|+|++|.+....+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 245677777777777654332222 2467788888888877653 33334556788888888887775444
Q ss_pred hhhhc-CCCCCEEEcCCCc
Q 042662 406 ISLEK-LLDLKEINVSFNN 423 (690)
Q Consensus 406 ~~l~~-l~~L~~l~ls~n~ 423 (690)
..+.. + ...++++.++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 44443 2 3557777665
No 349
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.82 E-value=2.3e-09 Score=108.14 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=28.5
Q ss_pred Hhcc----cCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYG----REGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~----~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||.. .+..++.++|||||||+++||+||+.|++.
T Consensus 178 PE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~ 215 (290)
T 3fme_A 178 PERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS 215 (290)
T ss_dssp HHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred hhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence 8874 566789999999999999999999999864
No 350
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.82 E-value=2.9e-09 Score=110.80 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=39.7
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
.+.|.....||+|+||.||+|... +|..||||++..... ...+.|.+|+..+
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 77 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLL 77 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHH
Confidence 345666788999999999999974 589999999865332 2345678888776
No 351
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=98.81 E-value=1.5e-09 Score=111.77 Aligned_cols=52 Identities=23% Similarity=0.342 Sum_probs=36.7
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||.||+|... +|..||||++..... ...+.+.+|++++
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 87 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLL 87 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHG
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHH
Confidence 345666788999999999999854 689999999864432 2245577788776
No 352
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=98.81 E-value=1.7e-09 Score=115.89 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=36.8
Q ss_pred CCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|.. .+|..+|+|++.... ....+.|.+|++++
T Consensus 12 ~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il 64 (444)
T 3soa_A 12 EYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARIC 64 (444)
T ss_dssp HEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence 455568899999999999986 468999999986543 22345688898877
No 353
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.81 E-value=2.7e-09 Score=111.03 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=41.0
Q ss_pred ccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-chHHHHHHHHHHH
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-GAFKSFDIECDMM 575 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-~~~~~f~~e~~~~ 575 (690)
..++|.-.+.||+|+||.||+|+.. +|..||||++..... .....+.+|++++
T Consensus 9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 63 (353)
T 2b9h_A 9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKIL 63 (353)
T ss_dssp SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHH
Confidence 3456777789999999999999975 589999999964332 2345677888776
No 354
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.81 E-value=2.3e-09 Score=111.43 Aligned_cols=51 Identities=27% Similarity=0.401 Sum_probs=38.1
Q ss_pred CCCCcccEecccCceeEEEEEe-CCCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.|...+.||+|+||.||+|+. .+|..||||++.... ......+.+|++++
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l 70 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL 70 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHH
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHH
Confidence 3455668899999999999998 468999999885433 22345677787766
No 355
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=98.81 E-value=2.4e-09 Score=110.62 Aligned_cols=50 Identities=14% Similarity=0.267 Sum_probs=38.4
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
.|...+.||+|+||.||++... ++..||+|++.... ....+.|..|++++
T Consensus 42 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l 95 (335)
T 2owb_A 42 RYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIH 95 (335)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHH
Confidence 3555688999999999999986 47899999986543 22356688888877
No 356
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.81 E-value=2.4e-09 Score=114.12 Aligned_cols=34 Identities=18% Similarity=0.102 Sum_probs=30.1
Q ss_pred HhcccCC-cccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREG-RVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~-~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..+. .++.++|||||||+++||+||+.|+..
T Consensus 225 PE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~ 259 (420)
T 1j1b_A 225 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPG 259 (420)
T ss_dssp HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCC
Confidence 8887654 789999999999999999999999864
No 357
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=1.6e-09 Score=112.18 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=86.5
Q ss_pred hhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeCCcCcccCccccc--CCCCCCeeeCCC--Cc------cCcc
Q 042662 239 IALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGGNKLCGFIPACSG--NLTNLRKLYLGS--NQ------LTSI 308 (690)
Q Consensus 239 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~------l~~~ 308 (690)
..+..+++|+.|.+++|.-. .++. +. +++|+.|+|..|.+.......+. .+|+|+.|+|+. |. +..+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44455566666666555211 1222 22 56666666666665433222222 456666666642 11 1111
Q ss_pred cccc--cccCCCceeeccCCcccCCCCCCc---cCCcccceeeccccccccc----cCccccCCCCCCeeeccCcccccc
Q 042662 309 PSTL--WNLKDILHLNLSSNSFTGPLPLKI---GNFNVLIQLDLSMNNFSGV----IPTKIGGLKDLQYLFLEYNRLQGS 379 (690)
Q Consensus 309 p~~~--~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~ 379 (690)
...+ ..+++|+.|+|++|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++..
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1112 236778888887777754222222 2467888888888887764 233345678889999988887644
Q ss_pred CCcccCC-CCCCCEEECcCCc
Q 042662 380 IPNSIGD-LISLKSLNLSNNN 399 (690)
Q Consensus 380 ~~~~l~~-l~~L~~L~Ls~n~ 399 (690)
.-..+.. + ...+++++++
T Consensus 323 ~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 323 MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHc--CCEEEecCCc
Confidence 3333332 2 3568888776
No 358
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=98.80 E-value=1.4e-09 Score=113.68 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=31.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++|||||||+++||+||+.|+..
T Consensus 208 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~ 241 (373)
T 2r5t_A 208 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYS 241 (373)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCC
Confidence 8888888899999999999999999999999853
No 359
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=98.80 E-value=2.8e-09 Score=114.99 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=39.1
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+|.-...||+|+||.||+|+.. +|..||||++.... ......+.+|++.+
T Consensus 17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l 70 (476)
T 2y94_A 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNL 70 (476)
T ss_dssp TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHH
T ss_pred CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHH
Confidence 4555578999999999999975 68999999996542 22345788999887
No 360
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=98.80 E-value=2.6e-09 Score=107.55 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=38.9
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||.||++... +|..||||++.... ....+.|.+|++++
T Consensus 24 y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l 74 (285)
T 3is5_A 24 FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVL 74 (285)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHH
T ss_pred eeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHH
Confidence 445588999999999999974 58899999986654 23456788898877
No 361
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=98.80 E-value=3.3e-09 Score=106.17 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=39.1
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|+.. +|+.||||++.... ....+.|.+|++.+
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l 65 (276)
T 2h6d_A 11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNL 65 (276)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHH
T ss_pred ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHH
Confidence 34555688999999999999986 68999999986532 22345788888776
No 362
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=98.80 E-value=1.9e-09 Score=114.87 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=38.5
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--------chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--------GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--------~~~~~f~~e~~~~ 575 (690)
.+.|.-.+.||+|+||.||+|... ++..||||++..... .....|.+|++++
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l 194 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEIL 194 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHH
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHH
Confidence 455667788999999999999875 578999999864321 1123578888877
No 363
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=98.80 E-value=3.1e-09 Score=110.86 Aligned_cols=50 Identities=20% Similarity=0.102 Sum_probs=38.6
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||++... +|..||||++..... ..+.+.+|+..+
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l 70 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINH 70 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHH
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHH
Confidence 34556688999999999999986 689999999865432 235677888766
No 364
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.80 E-value=6.5e-10 Score=114.80 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=30.0
Q ss_pred HhcccCCcc-cccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRV-STNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~-~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..+ +.++|||||||+++||+||+.|+..
T Consensus 198 PE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 232 (335)
T 3dls_A 198 PEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE 232 (335)
T ss_dssp HHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS
T ss_pred hhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh
Confidence 888777766 8899999999999999999999853
No 365
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.79 E-value=4.7e-09 Score=111.05 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=31.8
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..++.++.++|||||||+++||+||+.|+..
T Consensus 232 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~ 265 (400)
T 1nxk_A 232 PEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS 265 (400)
T ss_dssp GGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred HhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCC
Confidence 8988889999999999999999999999999864
No 366
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=98.79 E-value=1.4e-08 Score=102.32 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=36.5
Q ss_pred cccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
-...||+|+||.||+|... ++..||||++.... ....+.|.+|++++
T Consensus 30 ~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l 79 (290)
T 1t4h_A 30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML 79 (290)
T ss_dssp EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHH
T ss_pred eeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHH
Confidence 3467999999999999875 57899999986543 23356788888877
No 367
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.78 E-value=5.2e-09 Score=106.38 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc----cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY----RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~----~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|... ++..||||++.... ......|.+|++.+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l 60 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLL 60 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHH
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHH
Confidence 45667789999999999999974 58899999986543 23456788898877
No 368
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=98.78 E-value=2.6e-09 Score=110.72 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.3
Q ss_pred HhcccC--CcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGRE--GRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~--~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+ +.++.++|||||||+++||+||+.|+..
T Consensus 243 PE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~ 278 (345)
T 3hko_A 243 PEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPG 278 (345)
T ss_dssp HHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred chhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence 776644 6788999999999999999999999863
No 369
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=98.78 E-value=3.2e-09 Score=106.40 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=38.9
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
++|.-...||+|+||.||+|... +|..||||++.... ....+.|.+|++.+
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l 59 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL 59 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHH
Confidence 34555688999999999999975 68999999986543 22345678888776
No 370
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=98.78 E-value=7.2e-09 Score=106.30 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=35.2
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc--------chHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR--------GAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~--------~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|... +|..||||++..... .....|.+|++++
T Consensus 11 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l 69 (322)
T 2ycf_A 11 EYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEIL 69 (322)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHH
T ss_pred ceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHH
Confidence 3555688999999999999875 578999999864321 1233577888877
No 371
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.78 E-value=3.1e-09 Score=112.86 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=29.6
Q ss_pred HhcccC-CcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGRE-GRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~-~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+ ..++.++|||||||+++||+||+.|+..
T Consensus 204 PE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~ 238 (405)
T 3rgf_A 204 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHC 238 (405)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred chhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCC
Confidence 787766 4589999999999999999999999863
No 372
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.78 E-value=2.8e-09 Score=111.21 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=23.2
Q ss_pred hhhccCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecc
Q 042662 520 LFQATNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDL 559 (690)
Q Consensus 520 l~~at~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~ 559 (690)
.....++|.-.+.||+|+||.||+|+.. +|..||||++..
T Consensus 18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 58 (360)
T 3e3p_A 18 SRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQ 58 (360)
T ss_dssp HHHHHTTEEEC----------CEEEEETTTCCEEEEEEEEC
T ss_pred chhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEec
Confidence 3455667888889999999999999984 589999998744
No 373
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.76 E-value=5.2e-09 Score=108.04 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=30.7
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++|||||||+++||+||+.|+..
T Consensus 203 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 236 (339)
T 1z57_A 203 PEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236 (339)
T ss_dssp HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred hHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCC
Confidence 7777777889999999999999999999999864
No 374
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=98.76 E-value=5.4e-09 Score=105.84 Aligned_cols=52 Identities=21% Similarity=0.249 Sum_probs=39.2
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc---------chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR---------GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~---------~~~~~f~~e~~~~ 575 (690)
.++|...+.||+|+||.||+|... +|..||||++..... ...+.|.+|++++
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 77 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 77 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHH
Confidence 345666788999999999999985 588999999865421 1235677888776
No 375
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=98.75 E-value=5.3e-09 Score=113.88 Aligned_cols=49 Identities=27% Similarity=0.471 Sum_probs=38.9
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc---cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY---RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~---~~~~~~f~~e~~~~ 575 (690)
|...+.||+|+||.||+|... +|..||||++.... ......+.+|++++
T Consensus 28 y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l 80 (484)
T 3nyv_A 28 YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLL 80 (484)
T ss_dssp EEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHH
T ss_pred eEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHH
Confidence 444578999999999999975 68999999985432 23466789999887
No 376
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=98.74 E-value=7.1e-09 Score=104.42 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=39.4
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.|.-.+.||+|+||.||+|+.. +++.||||++.... ....+.|.+|++.+
T Consensus 23 ~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l 75 (287)
T 2wei_A 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL 75 (287)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHH
T ss_pred cceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHH
Confidence 3555688999999999999985 68999999986543 23456788898877
No 377
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.74 E-value=5.2e-09 Score=110.44 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=30.4
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
+.|.-...||+|+||.||+|... +|..||||++.... ....+.+.+|+..+
T Consensus 9 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l 62 (388)
T 3oz6_A 9 RKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMIL 62 (388)
T ss_dssp TTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHH
Confidence 45666688999999999999864 68999999985432 22345567777766
No 378
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=98.73 E-value=4.5e-09 Score=106.66 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=24.6
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDM 574 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~ 574 (690)
.++|.-.+.||+|+||.||+|... +|..||||++.... ....++|.+|++.
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~ 66 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQA 66 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------C
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHH
Confidence 345667789999999999999864 68899999774322 1123344444443
No 379
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=98.73 E-value=6.7e-09 Score=113.09 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=38.4
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||+||+|... +|..||||++.... ......+.+|++++
T Consensus 24 y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l 75 (486)
T 3mwu_A 24 YNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELL 75 (486)
T ss_dssp EEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHH
T ss_pred eEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHH
Confidence 444578999999999999975 68999999985432 33456788999887
No 380
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.73 E-value=6.5e-09 Score=108.10 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=30.9
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++|||||||+++||+||+.|+..
T Consensus 208 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 241 (355)
T 2eu9_A 208 PEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241 (355)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred CeeeecCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence 7777778889999999999999999999999864
No 381
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.72 E-value=7.4e-09 Score=108.58 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=30.3
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCcc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDEV 610 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~~ 610 (690)
||...+..++.++|||||||+++||+||+.|++..
T Consensus 204 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~ 238 (373)
T 1q8y_A 204 PEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD 238 (373)
T ss_dssp HHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred cHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence 88888888999999999999999999999998743
No 382
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.72 E-value=4.6e-09 Score=108.42 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=25.1
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||+..++.++.++|||||||+++||+||+.|+..
T Consensus 198 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~ 231 (336)
T 3fhr_A 198 PEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYS 231 (336)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHSSCCC--
T ss_pred hhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 8888788889999999999999999999999854
No 383
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=98.72 E-value=5.3e-09 Score=108.55 Aligned_cols=51 Identities=16% Similarity=0.283 Sum_probs=40.3
Q ss_pred cCCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccch-----------------HHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGA-----------------FKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~-----------------~~~f~~e~~~~ 575 (690)
.++|.-.+.||+|+||.||+|.. +|..||||++....... .+.|.+|++.+
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 97 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHH
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHH
Confidence 34566678899999999999999 89999999986443211 17788998887
No 384
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=98.72 E-value=6e-09 Score=107.23 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=28.0
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCC
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPT 607 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~ 607 (690)
||...+..++.++|||||||+++||+||..|.
T Consensus 245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~ 276 (332)
T 3qd2_B 245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQ 276 (332)
T ss_dssp HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCH
T ss_pred hHHhcCCCCcchhhHHHHHHHHHHHHHcCCCh
Confidence 66666778899999999999999999998764
No 385
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.72 E-value=5.9e-09 Score=106.67 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=24.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY 561 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~ 561 (690)
++|.....||+|+||.||+|... +|..||||++....
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 62 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSG 62 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETTS
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEecccc
Confidence 34555678999999999999985 68999999986543
No 386
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.71 E-value=2.1e-09 Score=110.14 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=28.6
Q ss_pred HhcccCCcc-cccceEEehhHHHHHHhcCCCCCC
Q 042662 576 KQYGREGRV-STNGDVYSFGIMLMETFTRKKPTD 608 (690)
Q Consensus 576 pe~~~~~~~-~~k~DvysfGv~llel~tg~~p~~ 608 (690)
||+..+... +.++|||||||+++||+||+.|++
T Consensus 217 PE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 250 (320)
T 3a99_A 217 PEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFE 250 (320)
T ss_dssp HHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred hHHhccCCCCCccchHHhHHHHHHHHHHCCCCCC
Confidence 777666665 788999999999999999999975
No 387
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=98.71 E-value=9.5e-09 Score=109.98 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=40.7
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.++|.-.+.||+|+||.||+|+.. +|..||||++.... ....+.+.+|++++
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l 79 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITIL 79 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHH
Confidence 456777789999999999999875 57899999996533 23356788898877
No 388
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=98.71 E-value=7.6e-09 Score=111.78 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=32.2
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
.+.|.-.+.||+|+||.||+|... +|..||||++.... ....+.|.+|++++
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l 106 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAIL 106 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHH
Confidence 355667788999999999999865 68999999986532 22356788898877
No 389
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=98.70 E-value=9.8e-09 Score=112.29 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=37.3
Q ss_pred cCCCCcccEecccCceeEEEEEeC-CCcEEEEEEeccccc-------------chHHHHHHHHHHH
Q 042662 524 TNGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-------------GAFKSFDIECDMM 575 (690)
Q Consensus 524 t~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-------------~~~~~f~~e~~~~ 575 (690)
.+.|...+.||+|+||+||+|... ++..||||++..... ...+++.+|++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 100 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLL 100 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHH
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHH
Confidence 345666788999999999999975 578999999864321 2356788999887
No 390
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.70 E-value=9.1e-09 Score=108.32 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=29.1
Q ss_pred hccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEec
Q 042662 522 QATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFD 558 (690)
Q Consensus 522 ~at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~ 558 (690)
...+.|.-.+.||+|+||.||+|.. .+|..||||++.
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~ 41 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVL 41 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEE
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEe
Confidence 3456677788999999999999986 568999999873
No 391
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=98.70 E-value=9.3e-09 Score=112.15 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=34.7
Q ss_pred CCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 527 FSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
|.-.+.||+|+||+||+|+.. ++..||||++.... ......+.+|++++
T Consensus 39 y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l 90 (494)
T 3lij_A 39 YQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVL 90 (494)
T ss_dssp EEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHH
T ss_pred eEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHH
Confidence 445578999999999999975 68899999986543 23456788999887
No 392
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.69 E-value=1.2e-08 Score=107.80 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=36.0
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|.-.+.||+|+||.||+|... +|+.||||++.... ...+.+.+|++++
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l 87 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLL 87 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHH
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHH
Confidence 45666788999999999999864 58899999986432 2234455555543
No 393
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.68 E-value=9.2e-09 Score=108.64 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=29.6
Q ss_pred HhcccCC-cccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREG-RVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~-~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+. .++.++|||||||+++||+||+.|+..
T Consensus 210 PE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~ 244 (394)
T 4e7w_A 210 PELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPG 244 (394)
T ss_dssp HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence 8877554 589999999999999999999999864
No 394
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.67 E-value=1.2e-08 Score=107.03 Aligned_cols=35 Identities=9% Similarity=0.226 Sum_probs=31.7
Q ss_pred HhcccC--CcccccceEEehhHHHHHHhcCCCCCCcc
Q 042662 576 KQYGRE--GRVSTNGDVYSFGIMLMETFTRKKPTDEV 610 (690)
Q Consensus 576 pe~~~~--~~~~~k~DvysfGv~llel~tg~~p~~~~ 610 (690)
||+..+ ..++.++|||||||+++||+||+.|+...
T Consensus 260 PE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~ 296 (371)
T 3q60_A 260 REFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV 296 (371)
T ss_dssp HHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred hhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence 888877 67899999999999999999999998754
No 395
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.67 E-value=1.4e-08 Score=108.79 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=31.6
Q ss_pred cccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 529 ENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
..++||+|+||+||.+...+|+.||||++.... .+.+.+|++++
T Consensus 19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~---~~~~~~E~~~l 62 (434)
T 2rio_A 19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDF---CDIALMEIKLL 62 (434)
T ss_dssp EEEEEEECSTTCEEEEEESSSSEEEEEEEEGGG---HHHHHHHHHHH
T ss_pred ccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHH---HHHHHHHHHHH
Confidence 457899999999976666689999999885432 23455565554
No 396
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.67 E-value=4e-09 Score=116.97 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=38.2
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
+.|.-...||+|+||.||+|... +|..||||++.... ....+.|.+|++++
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL 66 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIM 66 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 45667788999999999999874 58999999986542 33456688888877
No 397
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=98.65 E-value=1.1e-08 Score=102.95 Aligned_cols=51 Identities=29% Similarity=0.257 Sum_probs=38.3
Q ss_pred CCCCcccEecccCceeEEEEEeC-CCcEEEEEEecccc--cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQY--RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~--~~~~~~f~~e~~~~ 575 (690)
++|...+.||+|+||.||+|... +|..||||++.... .....++.+|+..+
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~ 64 (289)
T 1x8b_A 11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAH 64 (289)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHH
T ss_pred chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHH
Confidence 34556688999999999999986 68999999986532 22345677777655
No 398
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.65 E-value=6.8e-09 Score=105.93 Aligned_cols=37 Identities=30% Similarity=0.609 Sum_probs=28.9
Q ss_pred ccCCCCcccEecccCceeEEEEEe-CCCcEEEEEEecc
Q 042662 523 ATNGFSENNLIGRGGFGSVYKARI-HDGMEAAVKVFDL 559 (690)
Q Consensus 523 at~~f~~~~~ig~g~~g~vy~~~l-~~~~~vavk~~~~ 559 (690)
..++|.-.+.||+|+||.||+|.. .+|..||||++..
T Consensus 29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 66 (312)
T 2iwi_A 29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPR 66 (312)
T ss_dssp ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCS
T ss_pred hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEec
Confidence 345677788999999999999986 4688999999854
No 399
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=98.64 E-value=5.8e-09 Score=107.87 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=29.5
Q ss_pred HhcccCCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 576 KQYGREGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
||...+..++.++|||||||+++||+||+.|+..
T Consensus 189 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~ 222 (342)
T 2qr7_A 189 PEVLERQGYDAACDIWSLGVLLYTMLTGYTPFAN 222 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred HHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCC
Confidence 6666666688899999999999999999999864
No 400
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.58 E-value=3.6e-08 Score=99.89 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCcccccceEEehhHHHHHHhcCCCCCCc
Q 042662 581 EGRVSTNGDVYSFGIMLMETFTRKKPTDE 609 (690)
Q Consensus 581 ~~~~~~k~DvysfGv~llel~tg~~p~~~ 609 (690)
+..++.++|||||||+++||+||+.|+..
T Consensus 172 ~~~~~~~~DiwslG~il~el~tg~~pf~~ 200 (299)
T 3m2w_A 172 GEKYDKSCDMWSLGVIMYILLCGYPPFYS 200 (299)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred cccCCchhhHHHHHHHHHHHHHCCCCCCC
Confidence 35678899999999999999999999853
No 401
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.56 E-value=2.4e-08 Score=106.57 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=27.0
Q ss_pred Hhccc---CCcccccceEEehhHHHHHHhc-CCCCCC
Q 042662 576 KQYGR---EGRVSTNGDVYSFGIMLMETFT-RKKPTD 608 (690)
Q Consensus 576 pe~~~---~~~~~~k~DvysfGv~llel~t-g~~p~~ 608 (690)
||... ....+.++|||||||+++||+| |+.|+.
T Consensus 195 PE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~ 231 (432)
T 3p23_A 195 PEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFG 231 (432)
T ss_dssp GGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTB
T ss_pred hhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcc
Confidence 77765 4667889999999999999999 888875
No 402
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.48 E-value=3.2e-08 Score=112.32 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCCcccEecccCceeEEEEEeC--CCcEEEEEEecccc-cchHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIH--DGMEAAVKVFDLQY-RGAFKSFDIECDMM 575 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~--~~~~vavk~~~~~~-~~~~~~f~~e~~~~ 575 (690)
+.|.-...||+|+||.||+|... +|+.||||++.... ......|..|++.+
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l 133 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFL 133 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGG
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHH
Confidence 45666788999999999999975 58999999986433 23345678888766
No 403
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=98.41 E-value=1.3e-07 Score=95.73 Aligned_cols=49 Identities=29% Similarity=0.381 Sum_probs=36.3
Q ss_pred CCCcccEecccCceeEEEEEeC-CCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 526 GFSENNLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 526 ~f~~~~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+|...+.||+|+||.||+|+.. +|..||||++.... ...+.|.+|++.+
T Consensus 7 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l 56 (303)
T 1zy4_A 7 DFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLL 56 (303)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHH
T ss_pred cchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHH
Confidence 4556688999999999999974 68999999885422 2345566666654
No 404
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.5e-07 Score=86.12 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=53.0
Q ss_pred ccCCCCCCEEECCCC-cCccc----chhhhcCCCCCCEEeCcCCcCccc----CCccccCCCCCCEEEeeCCcCccc---
Q 042662 217 ISNLTNLIAIYLGRN-KLNGS----IPIALGKLKKLQLLSLEDNQLEGS----IPDNLCGLAALFQLDLGGNKLCGF--- 284 (690)
Q Consensus 217 l~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~--- 284 (690)
+...++|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444555555555555 55422 233344455555566655555432 122233344555555555555432
Q ss_pred -CcccccCCCCCCeeeC--CCCccCc-----ccccccccCCCceeeccCCcc
Q 042662 285 -IPACSGNLTNLRKLYL--GSNQLTS-----IPSTLWNLKDILHLNLSSNSF 328 (690)
Q Consensus 285 -~~~~~~~l~~L~~L~L--~~n~l~~-----~p~~~~~~~~L~~L~L~~n~l 328 (690)
+...+...++|+.|+| ++|.+.. +...+...++|+.|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444455555555 4455544 222333334455555555544
No 405
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=4.6e-07 Score=88.78 Aligned_cols=106 Identities=26% Similarity=0.245 Sum_probs=69.2
Q ss_pred CCCCCCE--EEccCCcCC---ccCCccccCCCCCCEEECcCCcccc--cCCcccCCCCCCCeeecccCcCcccCCccccC
Q 042662 8 NLAELQK--LWLDNNSLT---GTIPSSIFNLSSLSSLDLSDNSLTG--EIPYEIGNLHNLEWMAFSFNKLVGVVPTAIFN 80 (690)
Q Consensus 8 ~l~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 80 (690)
..+.|+. ++++.|... +.++....++++|+.|+|++|.+++ .+|..++.+++|++|+|++|++++. ..+..
T Consensus 139 ~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~ 216 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK 216 (267)
T ss_dssp GCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh
Confidence 3344444 666777432 2222222467888899999888886 4556677888889999988888754 33444
Q ss_pred CCCCCEEecCCCCCCCCCEEeccCCccCccCCc-------cccCCCCCCeEec
Q 042662 81 VSTLKSLYLHNVRLPNLEELLLWGNNFSGTIPS-------FIFNASKLFTLGL 126 (690)
Q Consensus 81 l~~L~~L~l~~~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~L 126 (690)
+.. + +|++|+|++|.+++.+|. .+..+++|+.||-
T Consensus 217 l~~----------l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 217 IKG----------L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GTT----------S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccc----------C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 331 2 477777777777766652 3677888888874
No 406
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=1.9e-07 Score=91.43 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=38.6
Q ss_pred Ccccceeecccccccc--ccCccccCCCCCCeeeccCccccccCCcccCCCC--CCCEEECcCCcCcccCCh-------h
Q 042662 339 FNVLIQLDLSMNNFSG--VIPTKIGGLKDLQYLFLEYNRLQGSIPNSIGDLI--SLKSLNLSNNNLSGTIPI-------S 407 (690)
Q Consensus 339 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~-------~ 407 (690)
++.|+.|+|++|.+++ .+|..+..+++|+.|+|++|++.+. ..+..+. +|+.|+|++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3444444444444444 2233344555555555555555533 1222222 566666666666654441 3
Q ss_pred hhcCCCCCEEE
Q 042662 408 LEKLLDLKEIN 418 (690)
Q Consensus 408 l~~l~~L~~l~ 418 (690)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666554
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=5.2e-07 Score=83.99 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=51.4
Q ss_pred cccCCCCCCEEEccCC-cCCCcCCCCCcccCCCCCCCCCEEEccCCcCCCCCChh----hhhccccCcEEEeecCccccc
Q 042662 138 TFGSLRNLEWLSLNDN-YLTSSTPKLSFLSSLSNCKYLEYFGFYNNPLGGILPRA----IGNLSQSMEDFQMHNCNISGS 212 (690)
Q Consensus 138 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~l~~l~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~L~~n~l~~~ 212 (690)
.+...+.|++|+|++| .+..... ......+...+.|++|+|++|.+....... +.... +|++|+|++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~-~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTL-KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGS 108 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHH-HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHH-HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHH
Confidence 3444555555555555 4432110 000123344455555555555554332222 22222 455555555555432
Q ss_pred ----CcccccCCCCCCEEEC--CCCcCccc----chhhhcCCCCCCEEeCcCCcC
Q 042662 213 ----IPEEISNLTNLIAIYL--GRNKLNGS----IPIALGKLKKLQLLSLEDNQL 257 (690)
Q Consensus 213 ----~p~~l~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 257 (690)
+...+...++|++|++ ++|.++.. +...+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2333444455555555 45555432 222333344555555555544
No 408
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=1.8e-06 Score=78.30 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=52.3
Q ss_pred CCcccCCCCCCCEEEccCCcCCccCCccccCCCCCCEEECcCCc-ccccCCcccCCC----CCCCeeecccCc-CcccCC
Q 042662 2 IPVELGNLAELQKLWLDNNSLTGTIPSSIFNLSSLSSLDLSDNS-LTGEIPYEIGNL----HNLEWMAFSFNK-LVGVVP 75 (690)
Q Consensus 2 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~p 75 (690)
+|.....-..|+.||++++.+++.--..+..+++|++|+|++|. ++..--..++.+ ++|++|+|++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 34433333457777777777765544556677777777777774 553333344443 357777777764 553333
Q ss_pred ccccCCCCCCEEecCCC
Q 042662 76 TAIFNVSTLKSLYLHNV 92 (690)
Q Consensus 76 ~~l~~l~~L~~L~l~~~ 92 (690)
..+..+++|++|+++++
T Consensus 133 ~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HHGGGCTTCCEEEEESC
T ss_pred HHHhcCCCCCEEECCCC
Confidence 34555555555555444
No 409
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1e-05 Score=73.42 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=37.0
Q ss_pred ccceeeccccccccccCccccCCCCCCeeeccCcc-ccccCCcccCCC----CCCCEEECcCCc-CcccCChhhhcCCCC
Q 042662 341 VLIQLDLSMNNFSGVIPTKIGGLKDLQYLFLEYNR-LQGSIPNSIGDL----ISLKSLNLSNNN-LSGTIPISLEKLLDL 414 (690)
Q Consensus 341 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~L 414 (690)
.|+.||++++.++..--..+.++++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34444444444443333334445555555555553 332211222221 245555555553 444333344455555
Q ss_pred CEEEcCCC
Q 042662 415 KEINVSFN 422 (690)
Q Consensus 415 ~~l~ls~n 422 (690)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 410
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.80 E-value=0.00087 Score=61.85 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CCCCCCEEECCCC-cCcc----cchhhhcCCCCCCEEeCcCCcCcccC----CccccCCCCCCEEEeeCCcCccc----C
Q 042662 219 NLTNLIAIYLGRN-KLNG----SIPIALGKLKKLQLLSLEDNQLEGSI----PDNLCGLAALFQLDLGGNKLCGF----I 285 (690)
Q Consensus 219 ~l~~L~~L~l~~n-~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~ 285 (690)
+-+.|+.|+|++| .+.. .+..++..-+.|+.|+|++|.+...- ...+..-+.|+.|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555543 4432 12333444455555555555554321 12222334555555555555432 2
Q ss_pred cccccCCCCCCeeeCCCC
Q 042662 286 PACSGNLTNLRKLYLGSN 303 (690)
Q Consensus 286 ~~~~~~l~~L~~L~L~~n 303 (690)
.+.+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 233334445555555543
No 411
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.54 E-value=0.00076 Score=62.26 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=9.1
Q ss_pred CCCCCCCCEEEccCCcCCC
Q 042662 168 LSNCKYLEYFGFYNNPLGG 186 (690)
Q Consensus 168 l~~l~~L~~L~l~~n~l~~ 186 (690)
+...+.|+.|+|++|.+.+
T Consensus 66 L~~N~~L~~L~L~~n~igd 84 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISD 84 (197)
T ss_dssp HTTCSCCCEEECTTSCCBH
T ss_pred HhhCCCcCEEEccCCCCCh
Confidence 3344445555555555443
No 412
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0086 Score=51.41 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=35.2
Q ss_pred eeeccCcccc-ccCCcccCCCCCCCEEECcCCcCcccCChhhhcCCCCCEEEcCCCcCcc
Q 042662 368 YLFLEYNRLQ-GSIPNSIGDLISLKSLNLSNNNLSGTIPISLEKLLDLKEINVSFNNLEG 426 (690)
Q Consensus 368 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~l~ls~n~l~~ 426 (690)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|++++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555666554 24444322 357777777777776656666777777777777666654
No 413
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=96.10 E-value=0.008 Score=59.53 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=44.3
Q ss_pred hHhhhccCCCCcccEecccCceeEEEEEeCCCcEEEEEEeccccc------------------chHHHHHHHHHHHHhcc
Q 042662 518 LELFQATNGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYR------------------GAFKSFDIECDMMKQYG 579 (690)
Q Consensus 518 ~~l~~at~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~------------------~~~~~f~~e~~~~pe~~ 579 (690)
..+......|.-.+.||+|+||.||+|...+|..||||.+..... .....|.+|++++-...
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 334444444555688999999999999997799999999864321 13456889998885544
No 414
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.07 E-value=0.0077 Score=51.71 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=4.9
Q ss_pred CceeeccCCccc
Q 042662 318 ILHLNLSSNSFT 329 (690)
Q Consensus 318 L~~L~L~~n~l~ 329 (690)
|+.|+|++|+|+
T Consensus 33 l~~L~Ls~N~l~ 44 (130)
T 3rfe_A 33 TTELVLTGNNLT 44 (130)
T ss_dssp CSEEECTTSCCS
T ss_pred CCEEECCCCcCC
Confidence 344444444443
No 415
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=96.07 E-value=0.0047 Score=62.94 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=40.5
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecccc--------cchHHHHHHHHHHHHhcc
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQY--------RGAFKSFDIECDMMKQYG 579 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~--------~~~~~~f~~e~~~~pe~~ 579 (690)
|...+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|++++-+..
T Consensus 22 y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 81 (336)
T 2vuw_A 22 LQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELS 81 (336)
T ss_dssp HHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHH
T ss_pred chheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHH
Confidence 44457899999999999998 78999999996542 223477889998876653
No 416
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=94.75 E-value=0.03 Score=54.50 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=26.6
Q ss_pred cccEecccCceeEEEEEe-CCCcE--EEEEEecc
Q 042662 529 ENNLIGRGGFGSVYKARI-HDGME--AAVKVFDL 559 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l-~~~~~--vavk~~~~ 559 (690)
-...||+|+||.||+|.. .+|.. ||||++..
T Consensus 51 i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~ 84 (258)
T 1zth_A 51 MGGVISTGKEANVFYADGVFDGKPVAMAVKIYRI 84 (258)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred hCCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence 346899999999999998 68888 99998744
No 417
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=94.62 E-value=0.041 Score=59.88 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=29.4
Q ss_pred CcccEecccCceeEEEEEeCCCcEEEEEEeccccc--------chHHHHHHHHHHHHhc
Q 042662 528 SENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYR--------GAFKSFDIECDMMKQY 578 (690)
Q Consensus 528 ~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~--------~~~~~f~~e~~~~pe~ 578 (690)
...++||+|+||.||+|.. .+..+|+|+...... ...+.|.+|++++-..
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l 396 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV 396 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc
Confidence 3457899999999999966 578899998744321 1134589999988443
No 418
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=92.69 E-value=0.082 Score=54.35 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCcccEecccCceeEEEEEeCCCcEEEEEEecc
Q 042662 527 FSENNLIGRGGFGSVYKARIHDGMEAAVKVFDL 559 (690)
Q Consensus 527 f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~ 559 (690)
+.-...||+|++|.||+|..++|+.||||+++.
T Consensus 97 Y~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~ 129 (397)
T 4gyi_A 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRL 129 (397)
T ss_dssp SEEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred EEecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence 555678999999999999999999999998753
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=89.54 E-value=0.27 Score=48.45 Aligned_cols=76 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred cccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHHHhcccC-CcccccceEEeh--hHHHHHHhcCCC
Q 042662 529 ENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMMKQYGRE-GRVSTNGDVYSF--GIMLMETFTRKK 605 (690)
Q Consensus 529 ~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~pe~~~~-~~~~~k~Dvysf--Gv~llel~tg~~ 605 (690)
....++.|.++.||+.+..+|..++||+...........|.+|++.+...... +.... .|+.+ ..+++|-+-|..
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP--~v~~~~~~~lvme~l~g~~ 96 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVP--QVAGWDDRTLAMEWVDERP 96 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSC--CEEEEETTEEEEECCCCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcC--eEEEecCcEEEEEecccCC
Confidence 34678999999999999999999999996544333456799999998655443 22222 23333 345567677765
Q ss_pred C
Q 042662 606 P 606 (690)
Q Consensus 606 p 606 (690)
+
T Consensus 97 ~ 97 (288)
T 3d1u_A 97 P 97 (288)
T ss_dssp C
T ss_pred C
Confidence 5
No 420
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=78.92 E-value=0.47 Score=51.82 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=22.3
Q ss_pred ecccCceeEEEEE-eCCCcEEEEEEecccc----------cchHHHHHHHHHHH
Q 042662 533 IGRGGFGSVYKAR-IHDGMEAAVKVFDLQY----------RGAFKSFDIECDMM 575 (690)
Q Consensus 533 ig~g~~g~vy~~~-l~~~~~vavk~~~~~~----------~~~~~~f~~e~~~~ 575 (690)
.+.|+.|.++++. .--|..+|||.+.... ....++|.+|+++|
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l 295 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFL 295 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHH
Confidence 4455555544432 1247889999985432 22356799999998
No 421
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=75.67 E-value=2.9 Score=40.82 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred ccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHHHhc
Q 042662 530 NNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMMKQY 578 (690)
Q Consensus 530 ~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~pe~ 578 (690)
...+|.|..+.||+.++.||+.|.||+-..........|.+|.+.+-..
T Consensus 20 v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L 68 (288)
T 3f7w_A 20 VAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWL 68 (288)
T ss_dssp EEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHH
T ss_pred EEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHH
Confidence 3568999999999999999999999987554444445688898877433
No 422
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.75 E-value=5.8 Score=26.07 Aligned_cols=8 Identities=25% Similarity=0.044 Sum_probs=3.1
Q ss_pred hhhhhcCC
Q 042662 490 ILKYRKGG 497 (690)
Q Consensus 490 ~~~~~r~~ 497 (690)
++++|||+
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 33334333
No 423
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=65.32 E-value=4.2 Score=26.66 Aligned_cols=7 Identities=0% Similarity=0.164 Sum_probs=2.7
Q ss_pred hhhhcCC
Q 042662 491 LKYRKGG 497 (690)
Q Consensus 491 ~~~~r~~ 497 (690)
++.|||+
T Consensus 33 ~~~RRR~ 39 (44)
T 2jwa_A 33 ILIKRRQ 39 (44)
T ss_dssp HHHHHHC
T ss_pred hheehhh
Confidence 3334333
No 424
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=63.53 E-value=1.1 Score=45.00 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=26.2
Q ss_pred HhcccCCcccccceEEehhHH-HHHHhcCCCCCC
Q 042662 576 KQYGREGRVSTNGDVYSFGIM-LMETFTRKKPTD 608 (690)
Q Consensus 576 pe~~~~~~~~~k~DvysfGv~-llel~tg~~p~~ 608 (690)
||...+.. +.++||||+|+. ..|+++|..|+.
T Consensus 246 PE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 246 EDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp SGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred hhhhcCCC-ccceehhhhhCCCCcccccccCCCc
Confidence 99877555 999999998776 677888998864
No 425
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.78 E-value=7 Score=25.64 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.0
Q ss_pred hhhhhhcCCC
Q 042662 489 LILKYRKGGK 498 (690)
Q Consensus 489 ~~~~~~r~~~ 498 (690)
+++++|||++
T Consensus 30 ~~~~~RRRr~ 39 (44)
T 2l2t_A 30 FAVYVRRKSI 39 (44)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHhhhhhh
Confidence 3344444433
No 426
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=49.04 E-value=13 Score=35.00 Aligned_cols=39 Identities=13% Similarity=-0.032 Sum_probs=28.1
Q ss_pred cccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHH
Q 042662 534 GRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMM 575 (690)
Q Consensus 534 g~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~ 575 (690)
+.|..+.||+....+|..++||..... ....+..|++.+
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l 67 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARL 67 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHH
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHH
Confidence 355569999999877888999987553 223466777666
No 427
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.93 E-value=40 Score=26.64 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=25.9
Q ss_pred CCccCCccccCCCCCCEEECcCCcccccCCcccCCCCCCCeeeccc
Q 042662 22 LTGTIPSSIFNLSSLSSLDLSDNSLTGEIPYEIGNLHNLEWMAFSF 67 (690)
Q Consensus 22 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 67 (690)
++..-..+|.++++|+.+.|..+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34334455666666666666554 3334455666666666666554
No 428
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=45.18 E-value=20 Score=33.89 Aligned_cols=51 Identities=22% Similarity=0.168 Sum_probs=34.9
Q ss_pred CCCCcccEecccCceeEEEEEeCCCcEEEEEEecccccchHHHHHHHHHHHH
Q 042662 525 NGFSENNLIGRGGFGSVYKARIHDGMEAAVKVFDLQYRGAFKSFDIECDMMK 576 (690)
Q Consensus 525 ~~f~~~~~ig~g~~g~vy~~~l~~~~~vavk~~~~~~~~~~~~f~~e~~~~p 576 (690)
.+|.-....+.|+.+.||+.... |..+++|+...........+.+|++.+.
T Consensus 14 ~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~ 64 (263)
T 3tm0_A 14 EKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMML 64 (263)
T ss_dssp TTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHH
T ss_pred ccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHH
Confidence 34544455677788899999864 6889999986543233345778887773
No 429
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.42 E-value=82 Score=24.74 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=22.4
Q ss_pred cccchhhhcCCCCCCEEeCcCCcCcccCCccccCCCCCCEEEeeC
Q 042662 234 NGSIPIALGKLKKLQLLSLEDNQLEGSIPDNLCGLAALFQLDLGG 278 (690)
Q Consensus 234 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 278 (690)
+.+-..+|.+|.+|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3333445555666666655543 2223334555566666665544
No 430
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=31.75 E-value=48 Score=33.62 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=30.1
Q ss_pred cEecccCceeEEEEEeC-CCcEEEEEEeccccc-------chHHHHHHHHHHHHh
Q 042662 531 NLIGRGGFGSVYKARIH-DGMEAAVKVFDLQYR-------GAFKSFDIECDMMKQ 577 (690)
Q Consensus 531 ~~ig~g~~g~vy~~~l~-~~~~vavk~~~~~~~-------~~~~~f~~e~~~~pe 577 (690)
..+|.|.++.||+++.. ++..++||....... .....+..|.+.+..
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~ 90 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIR 90 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHH
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHH
Confidence 56899999999999865 467899997643211 123446667776643
Done!