BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042663
         (293 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 29.6 bits (65), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 118 MKEKLYALRALVPNIT--KMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLTGAERQ 175
           +K+  ++LR  VP++   K  +A I+  A  Y+Q ++ K   L+ +I DL+      E+Q
Sbjct: 19  IKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQDIDDLKRQNALLEQQ 78


>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
           Dehydrogenase
 pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
           Dehydrogenase
          Length = 335

 Score = 29.3 bits (64), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 171 GAERQDQESTGNTKKTRVRSKKNPTCKKIMQMGVFQVEER 210
           G E    +S  N +K  +    +P C+KI+Q G  QV E+
Sbjct: 14  GTENLYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEK 53


>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate
           Coa-Transferase From Porphyromonas Gingivalis W83
          Length = 434

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 10  QNKDFELH--DFIDDPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQIGSTGEDMFGL 67
           +N D EL+  D+++DP +    D     N  +E       VSECI   Q   TG  +  +
Sbjct: 286 KNPDVELYPVDYVNDPRVIAQNDNXVSINSCIEIDLXGQVVSECIGSKQFSGTGGQVDYV 345

Query: 68  NGDA 71
            G A
Sbjct: 346 RGAA 349


>pdb|2P14|A Chain A, Crystal Structure Of Small Subunit (r.bspd6i2) Of The
           Heterodimeric Restriction Endonuclease R.bspd6i
          Length = 192

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 117 KMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLTGAERQ- 175
           ++ +KL + + LVPN    D    +G+A+  V+D+ ++ +     I   E SLT  E+Q 
Sbjct: 27  RVFKKLGSYKNLVPNFKLDDSGHPIGNAIPGVEDILVEYEHFSILI---ECSLTIGEKQL 83

Query: 176 DQESTGNTKKTRVRSKK 192
           D E     +  +   KK
Sbjct: 84  DYEGDSVVRHLQEYKKK 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,485,081
Number of Sequences: 62578
Number of extensions: 270843
Number of successful extensions: 543
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 5
length of query: 293
length of database: 14,973,337
effective HSP length: 98
effective length of query: 195
effective length of database: 8,840,693
effective search space: 1723935135
effective search space used: 1723935135
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)