Query 042663
Match_columns 293
No_of_seqs 246 out of 1315
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:21:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 2.5E-13 5.4E-18 97.6 5.7 54 102-155 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 2.6E-13 5.5E-18 96.6 5.3 50 103-152 1-55 (55)
3 smart00353 HLH helix loop heli 99.3 2.2E-12 4.8E-17 90.7 5.9 49 108-156 1-52 (53)
4 KOG1319 bHLHZip transcription 99.1 4.4E-11 9.5E-16 104.3 5.0 72 98-169 57-135 (229)
5 KOG1318 Helix loop helix trans 99.1 2.3E-10 4.9E-15 111.1 10.2 61 97-157 227-291 (411)
6 KOG2483 Upstream transcription 98.5 7.2E-07 1.6E-11 81.3 9.6 68 98-165 54-124 (232)
7 KOG4304 Transcriptional repres 98.4 2E-07 4.4E-12 86.0 3.2 56 102-157 31-94 (250)
8 KOG3561 Aryl-hydrocarbon recep 98.3 7E-07 1.5E-11 93.4 5.1 56 99-154 16-75 (803)
9 KOG0561 bHLH transcription fac 98.2 6.4E-07 1.4E-11 83.5 2.6 67 100-166 57-125 (373)
10 KOG2588 Predicted DNA-binding 98.2 8.9E-07 1.9E-11 93.0 2.7 65 102-166 275-340 (953)
11 cd04897 ACT_ACR_3 ACT domain-c 98.1 2.9E-05 6.4E-10 59.1 9.9 67 213-281 3-69 (75)
12 cd04896 ACT_ACR-like_3 ACT dom 98.1 2.9E-05 6.3E-10 59.1 9.6 66 213-281 2-73 (75)
13 cd04895 ACT_ACR_1 ACT domain-c 98.1 3.1E-05 6.8E-10 58.4 9.6 67 213-281 3-69 (72)
14 KOG3960 Myogenic helix-loop-he 98.1 5.7E-05 1.2E-09 69.1 12.6 65 102-166 117-183 (284)
15 cd04927 ACT_ACR-like_2 Second 98.0 6.7E-05 1.5E-09 56.8 9.7 67 212-281 1-68 (76)
16 cd04900 ACT_UUR-like_1 ACT dom 97.9 0.00015 3.2E-09 54.1 10.5 69 212-282 2-71 (73)
17 cd04925 ACT_ACR_2 ACT domain-c 97.9 0.00016 3.5E-09 54.2 10.3 68 213-281 2-69 (74)
18 PLN03217 transcription factor 97.8 6.8E-05 1.5E-09 57.9 6.4 53 116-168 20-78 (93)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.5 0.0019 4.2E-08 46.8 10.0 66 213-281 2-67 (70)
20 PF13740 ACT_6: ACT domain; PD 97.4 0.0013 2.9E-08 49.4 9.1 72 211-287 2-73 (76)
21 KOG4029 Transcription factor H 97.4 0.00014 3.1E-09 66.1 4.2 61 99-159 105-169 (228)
22 cd04928 ACT_TyrKc Uncharacteri 97.3 0.0025 5.4E-08 47.6 9.4 64 213-280 3-67 (68)
23 cd04893 ACT_GcvR_1 ACT domains 97.3 0.0026 5.7E-08 48.0 9.6 70 212-286 2-71 (77)
24 cd04926 ACT_ACR_4 C-terminal 97.3 0.0034 7.4E-08 46.7 9.8 66 212-280 2-67 (72)
25 cd04869 ACT_GcvR_2 ACT domains 97.0 0.0077 1.7E-07 45.1 9.5 70 214-287 2-77 (81)
26 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0071 1.5E-07 46.5 8.3 72 212-286 2-73 (88)
27 PRK00194 hypothetical protein; 96.9 0.0078 1.7E-07 46.3 8.4 73 211-286 3-75 (90)
28 cd04873 ACT_UUR-ACR-like ACT d 96.8 0.021 4.6E-07 40.9 10.1 67 213-282 2-68 (70)
29 PRK05007 PII uridylyl-transfer 96.8 0.0075 1.6E-07 65.0 10.3 70 209-280 806-878 (884)
30 cd04875 ACT_F4HF-DF N-terminal 96.7 0.02 4.3E-07 42.4 9.3 67 213-282 1-69 (74)
31 cd04870 ACT_PSP_1 CT domains f 96.7 0.016 3.4E-07 43.3 8.7 70 214-287 2-71 (75)
32 cd04886 ACT_ThrD-II-like C-ter 96.5 0.03 6.6E-07 39.8 9.1 67 214-288 1-72 (73)
33 PF01842 ACT: ACT domain; Int 96.5 0.024 5.3E-07 40.0 8.1 38 212-250 1-38 (66)
34 PF13291 ACT_4: ACT domain; PD 96.5 0.025 5.5E-07 42.4 8.5 50 211-261 6-57 (80)
35 PRK00275 glnD PII uridylyl-tra 96.4 0.028 6.1E-07 60.8 11.4 72 209-282 812-887 (895)
36 PRK04374 PII uridylyl-transfer 96.2 0.036 7.8E-07 59.8 11.3 71 209-282 794-864 (869)
37 PRK01759 glnD PII uridylyl-tra 96.0 0.036 7.8E-07 59.6 9.9 71 209-282 781-851 (854)
38 PRK03059 PII uridylyl-transfer 96.0 0.034 7.4E-07 59.8 9.8 49 209-258 784-832 (856)
39 PRK03381 PII uridylyl-transfer 95.9 0.059 1.3E-06 57.4 10.8 68 210-281 706-773 (774)
40 PRK05092 PII uridylyl-transfer 95.9 0.068 1.5E-06 58.0 11.3 71 209-281 841-915 (931)
41 cd04894 ACT_ACR-like_1 ACT dom 95.8 0.059 1.3E-06 39.7 7.1 66 213-279 2-67 (69)
42 PRK03381 PII uridylyl-transfer 95.8 0.063 1.4E-06 57.2 10.4 72 209-282 597-668 (774)
43 KOG3910 Helix loop helix trans 95.7 0.0083 1.8E-07 59.9 3.4 60 99-158 522-585 (632)
44 TIGR01693 UTase_glnD [Protein- 95.3 0.094 2E-06 56.3 9.8 70 209-281 777-846 (850)
45 cd04887 ACT_MalLac-Enz ACT_Mal 95.3 0.12 2.7E-06 37.7 7.6 47 214-261 2-49 (74)
46 cd04883 ACT_AcuB C-terminal AC 95.2 0.19 4.2E-06 36.3 8.4 68 212-290 2-71 (72)
47 cd04882 ACT_Bt0572_2 C-termina 95.2 0.1 2.3E-06 36.7 6.7 62 214-288 2-65 (65)
48 TIGR01693 UTase_glnD [Protein- 95.1 0.15 3.3E-06 54.7 10.8 73 209-283 666-743 (850)
49 COG2844 GlnD UTP:GlnB (protein 95.0 0.11 2.3E-06 55.3 8.9 72 209-283 789-860 (867)
50 KOG4447 Transcription factor T 95.0 0.014 3E-07 50.0 1.9 50 103-152 78-129 (173)
51 cd04908 ACT_Bt0572_1 N-termina 94.5 0.36 7.9E-06 34.8 8.3 62 213-287 3-64 (66)
52 PRK13010 purU formyltetrahydro 94.4 0.24 5.2E-06 46.8 8.9 74 211-286 9-84 (289)
53 cd04909 ACT_PDH-BS C-terminal 94.4 0.34 7.5E-06 34.9 7.9 65 213-287 3-69 (69)
54 PRK05007 PII uridylyl-transfer 94.3 0.41 8.9E-06 51.8 11.5 73 209-283 699-775 (884)
55 cd04888 ACT_PheB-BS C-terminal 94.2 0.26 5.7E-06 35.9 7.2 48 213-261 2-50 (76)
56 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.2 0.41 8.9E-06 34.4 8.1 48 212-260 1-50 (79)
57 PRK01759 glnD PII uridylyl-tra 94.0 0.5 1.1E-05 51.0 11.3 73 209-283 675-751 (854)
58 PRK04435 hypothetical protein; 93.8 0.38 8.3E-06 40.9 8.2 54 207-261 65-119 (147)
59 PRK06027 purU formyltetrahydro 93.8 0.51 1.1E-05 44.5 9.8 73 211-286 6-80 (286)
60 PRK05092 PII uridylyl-transfer 93.7 0.61 1.3E-05 50.8 11.6 72 210-282 731-806 (931)
61 cd04877 ACT_TyrR N-terminal AC 93.6 0.62 1.3E-05 34.4 8.2 45 213-261 2-46 (74)
62 PRK00275 glnD PII uridylyl-tra 93.4 0.53 1.2E-05 51.1 10.4 73 210-283 703-780 (895)
63 cd02116 ACT ACT domains are co 93.4 0.57 1.2E-05 30.0 7.0 35 214-249 1-35 (60)
64 PRK04374 PII uridylyl-transfer 93.0 0.55 1.2E-05 50.8 9.8 74 209-283 688-762 (869)
65 TIGR00655 PurU formyltetrahydr 92.9 0.74 1.6E-05 43.4 9.4 65 213-280 2-68 (280)
66 PRK03059 PII uridylyl-transfer 92.5 0.82 1.8E-05 49.4 10.2 73 209-283 676-752 (856)
67 cd04880 ACT_AAAH-PDT-like ACT 92.3 1.3 2.9E-05 32.5 8.4 47 215-262 3-50 (75)
68 PRK13011 formyltetrahydrofolat 92.1 1.2 2.6E-05 42.1 9.7 72 211-286 7-80 (286)
69 PRK08577 hypothetical protein; 91.8 1.4 3.1E-05 36.6 8.9 52 210-262 55-108 (136)
70 cd04876 ACT_RelA-SpoT ACT dom 91.8 2.6 5.7E-05 28.3 9.0 46 214-260 1-47 (71)
71 PRK07334 threonine dehydratase 91.2 1.5 3.3E-05 43.0 9.8 68 211-286 326-398 (403)
72 COG3830 ACT domain-containing 91.1 0.6 1.3E-05 36.7 5.5 73 212-287 4-76 (90)
73 cd04874 ACT_Af1403 N-terminal 90.3 1.7 3.6E-05 30.6 7.0 36 213-249 2-37 (72)
74 cd04884 ACT_CBS C-terminal ACT 90.3 2.1 4.5E-05 31.2 7.6 65 214-287 2-69 (72)
75 cd04878 ACT_AHAS N-terminal AC 89.8 2.2 4.9E-05 29.8 7.3 47 213-260 2-50 (72)
76 cd04905 ACT_CM-PDT C-terminal 89.8 4.1 9E-05 30.3 9.0 49 214-263 4-53 (80)
77 KOG3560 Aryl-hydrocarbon recep 89.7 0.27 5.9E-06 50.0 3.0 41 109-149 31-75 (712)
78 cd04903 ACT_LSD C-terminal ACT 89.4 3 6.4E-05 29.1 7.7 33 214-247 2-34 (71)
79 cd04885 ACT_ThrD-I Tandem C-te 89.4 3.2 6.9E-05 30.1 7.9 65 215-288 2-67 (68)
80 cd04879 ACT_3PGDH-like ACT_3PG 89.2 1.7 3.7E-05 30.2 6.3 44 214-258 2-47 (71)
81 cd04889 ACT_PDH-BS-like C-term 89.1 1.6 3.5E-05 30.1 5.9 44 214-258 1-45 (56)
82 KOG3898 Transcription factor N 88.7 0.25 5.3E-06 46.0 1.9 53 101-153 70-125 (254)
83 PRK11589 gcvR glycine cleavage 88.3 1.3 2.9E-05 39.3 6.2 71 211-286 8-78 (190)
84 PRK06382 threonine dehydratase 86.5 4.7 0.0001 39.6 9.5 73 208-288 327-404 (406)
85 KOG3558 Hypoxia-inducible fact 86.4 0.55 1.2E-05 49.0 2.9 46 104-149 47-96 (768)
86 KOG4395 Transcription factor A 86.0 1 2.3E-05 41.7 4.2 51 102-152 173-226 (285)
87 cd04904 ACT_AAAH ACT domain of 85.9 7.1 0.00015 28.9 8.1 46 216-262 5-51 (74)
88 cd04901 ACT_3PGDH C-terminal A 85.3 1.2 2.6E-05 31.7 3.5 46 214-260 2-47 (69)
89 KOG3559 Transcriptional regula 85.2 0.91 2E-05 44.9 3.6 41 110-150 8-52 (598)
90 cd04906 ACT_ThrD-I_1 First of 84.9 10 0.00023 28.7 8.8 70 212-290 2-72 (85)
91 PRK11152 ilvM acetolactate syn 83.6 7.3 0.00016 29.6 7.3 54 212-267 4-57 (76)
92 PF05088 Bac_GDH: Bacterial NA 83.0 7.4 0.00016 44.7 10.0 71 210-282 488-563 (1528)
93 TIGR01127 ilvA_1Cterm threonin 83.0 10 0.00022 36.7 10.0 72 208-287 302-378 (380)
94 cd04931 ACT_PAH ACT domain of 82.7 13 0.00028 29.0 8.6 51 212-263 15-66 (90)
95 KOG3582 Mlx interactors and re 82.2 0.84 1.8E-05 47.8 2.1 63 101-163 649-716 (856)
96 PRK06737 acetolactate synthase 81.8 7.3 0.00016 29.7 6.7 54 212-266 3-56 (76)
97 PRK11589 gcvR glycine cleavage 80.7 12 0.00027 33.2 8.8 70 212-285 96-171 (190)
98 COG0788 PurU Formyltetrahydrof 80.6 8.4 0.00018 36.3 7.9 66 210-278 6-73 (287)
99 PRK08526 threonine dehydratase 80.2 12 0.00027 36.8 9.5 73 208-288 323-400 (403)
100 PF13710 ACT_5: ACT domain; PD 80.1 5.4 0.00012 28.9 5.3 47 220-267 1-47 (63)
101 PRK10872 relA (p)ppGpp synthet 79.9 12 0.00027 40.0 9.9 49 212-261 667-717 (743)
102 TIGR00691 spoT_relA (p)ppGpp s 79.8 6.8 0.00015 41.4 8.0 49 212-261 611-660 (683)
103 cd04929 ACT_TPH ACT domain of 79.1 16 0.00034 27.4 7.7 45 218-263 7-52 (74)
104 PRK00227 glnD PII uridylyl-tra 79.1 11 0.00024 40.0 9.1 70 210-282 545-615 (693)
105 PRK08198 threonine dehydratase 79.0 15 0.00033 35.8 9.7 73 208-288 324-401 (404)
106 PRK11092 bifunctional (p)ppGpp 78.5 8 0.00017 41.1 8.0 49 212-261 627-676 (702)
107 PRK11895 ilvH acetolactate syn 78.1 8.9 0.00019 33.3 6.9 54 212-266 3-56 (161)
108 cd04902 ACT_3PGDH-xct C-termin 77.3 6.5 0.00014 28.0 5.0 45 214-259 2-48 (73)
109 CHL00100 ilvH acetohydroxyacid 76.7 14 0.00031 32.5 7.8 65 212-279 3-67 (174)
110 TIGR00119 acolac_sm acetolacta 76.0 11 0.00025 32.5 6.9 50 213-263 3-52 (157)
111 COG2844 GlnD UTP:GlnB (protein 73.3 17 0.00038 39.1 8.7 74 208-283 681-758 (867)
112 PRK13562 acetolactate synthase 67.1 22 0.00047 27.7 6.0 48 213-261 4-51 (84)
113 TIGR02079 THD1 threonine dehyd 65.6 51 0.0011 32.5 9.8 74 208-289 322-397 (409)
114 PF06005 DUF904: Protein of un 65.1 14 0.0003 27.8 4.5 26 141-166 13-38 (72)
115 COG3074 Uncharacterized protei 62.2 16 0.00035 27.5 4.2 29 141-169 13-41 (79)
116 COG4492 PheB ACT domain-contai 59.9 59 0.0013 27.7 7.7 52 209-261 70-122 (150)
117 KOG4447 Transcription factor T 58.0 7.9 0.00017 33.5 2.2 42 110-151 29-72 (173)
118 PRK09224 threonine dehydratase 57.4 70 0.0015 32.6 9.4 74 208-290 325-399 (504)
119 cd04930 ACT_TH ACT domain of t 57.2 64 0.0014 26.3 7.5 49 214-263 44-93 (115)
120 COG2061 ACT-domain-containing 56.8 80 0.0017 27.5 8.1 67 212-286 6-75 (170)
121 PRK15422 septal ring assembly 55.5 23 0.00051 27.2 4.2 28 141-168 13-40 (79)
122 COG3978 Acetolactate synthase 54.8 59 0.0013 25.2 6.3 58 212-271 4-61 (86)
123 PRK11899 prephenate dehydratas 52.7 1.2E+02 0.0026 28.5 9.5 62 214-279 197-259 (279)
124 KOG3582 Mlx interactors and re 52.3 5.6 0.00012 41.9 0.5 65 97-164 781-850 (856)
125 PRK08639 threonine dehydratase 52.2 87 0.0019 30.9 8.9 73 208-288 333-407 (420)
126 smart00338 BRLZ basic region l 50.9 25 0.00055 25.2 3.7 25 145-169 25-49 (65)
127 PRK12483 threonine dehydratase 49.8 1.5E+02 0.0032 30.6 10.3 73 208-289 342-415 (521)
128 PRK00227 glnD PII uridylyl-tra 49.6 28 0.00061 37.0 5.2 62 211-282 631-692 (693)
129 COG0317 SpoT Guanosine polypho 48.6 57 0.0012 34.8 7.2 50 211-261 627-677 (701)
130 cd04871 ACT_PSP_2 ACT domains 47.7 25 0.00054 26.8 3.4 68 215-287 3-80 (84)
131 PRK08178 acetolactate synthase 47.4 91 0.002 24.9 6.6 50 211-261 8-57 (96)
132 cd04868 ACT_AK-like ACT domain 47.2 77 0.0017 20.5 5.9 25 221-246 13-37 (60)
133 cd04892 ACT_AK-like_2 ACT doma 44.0 94 0.002 20.6 5.9 33 213-246 2-37 (65)
134 PF02344 Myc-LZ: Myc leucine z 43.8 27 0.00058 22.3 2.4 18 110-127 12-29 (32)
135 PRK05974 phosphoribosylformylg 43.6 1.2E+02 0.0027 22.8 6.7 57 219-283 8-69 (80)
136 PF09383 NIL: NIL domain; Int 43.4 1.3E+02 0.0028 22.0 8.6 41 222-264 16-56 (76)
137 PF02120 Flg_hook: Flagellar h 42.3 1.1E+02 0.0024 22.6 6.3 48 199-247 24-78 (85)
138 PF00170 bZIP_1: bZIP transcri 40.6 48 0.001 23.7 3.8 21 146-166 26-46 (64)
139 cd04921 ACT_AKi-HSDH-ThrA-like 40.1 1.3E+02 0.0027 21.7 6.2 63 220-287 13-75 (80)
140 TIGR01124 ilvA_2Cterm threonin 39.2 2.4E+02 0.0053 28.7 9.9 73 208-290 322-395 (499)
141 PF05687 DUF822: Plant protein 38.0 39 0.00084 29.0 3.3 31 98-128 6-36 (150)
142 PLN02550 threonine dehydratase 37.8 1.9E+02 0.0041 30.4 9.0 71 209-289 415-486 (591)
143 COG4747 ACT domain-containing 37.4 2E+02 0.0043 24.1 7.3 37 213-250 5-41 (142)
144 PF09006 Surfac_D-trimer: Lung 37.3 54 0.0012 22.7 3.3 23 148-170 1-23 (46)
145 cd04922 ACT_AKi-HSDH-ThrA_2 AC 37.0 1.4E+02 0.003 20.4 6.5 31 214-245 4-37 (66)
146 PF08826 DMPK_coil: DMPK coile 35.4 89 0.0019 22.8 4.5 53 110-167 8-60 (61)
147 KOG4005 Transcription factor X 35.4 1.1E+02 0.0024 28.5 6.0 63 98-167 54-118 (292)
148 PF00403 HMA: Heavy-metal-asso 35.3 1.2E+02 0.0026 20.8 5.2 53 222-286 10-62 (62)
149 PF13840 ACT_7: ACT domain ; P 34.8 78 0.0017 22.7 4.2 34 210-244 5-42 (65)
150 PF09789 DUF2353: Uncharacteri 34.8 1.4E+02 0.0029 29.0 6.9 54 114-167 38-100 (319)
151 PF02185 HR1: Hr1 repeat; Int 34.5 1.8E+02 0.0039 21.1 7.0 49 118-170 16-64 (70)
152 PF14197 Cep57_CLD_2: Centroso 33.5 81 0.0018 23.5 4.1 28 139-166 40-67 (69)
153 PF09849 DUF2076: Uncharacteri 33.3 1.2E+02 0.0025 28.3 6.0 29 136-166 47-75 (247)
154 cd04919 ACT_AK-Hom3_2 ACT doma 33.0 1.6E+02 0.0035 20.2 6.4 26 220-246 13-38 (66)
155 PF13805 Pil1: Eisosome compon 32.9 1.4E+02 0.003 28.3 6.4 46 108-166 140-185 (271)
156 cd04933 ACT_AK1-AT_1 ACT domai 32.9 2.1E+02 0.0046 21.5 7.4 31 213-244 3-36 (78)
157 cd04890 ACT_AK-like_1 ACT doma 32.6 1.7E+02 0.0036 20.1 6.0 24 220-244 12-35 (62)
158 PF10393 Matrilin_ccoil: Trime 32.4 1.2E+02 0.0026 21.0 4.5 30 140-169 17-46 (47)
159 cd04932 ACT_AKiii-LysC-EC_1 AC 31.5 2.1E+02 0.0046 21.1 8.4 25 219-244 12-36 (75)
160 PF07716 bZIP_2: Basic region 30.0 95 0.0021 21.5 3.8 22 146-167 25-46 (54)
161 PF11619 P53_C: Transcription 29.4 74 0.0016 23.7 3.2 35 201-235 6-40 (71)
162 PF01166 TSC22: TSC-22/dip/bun 28.2 1.1E+02 0.0024 22.2 3.9 25 146-170 21-45 (59)
163 cd04937 ACT_AKi-DapG-BS_2 ACT 28.1 1.5E+02 0.0034 20.7 4.8 24 220-244 13-36 (64)
164 PRK11898 prephenate dehydratas 28.0 2.3E+02 0.0051 26.5 7.2 60 214-277 199-260 (283)
165 PRK15385 magnesium transport p 27.8 4.8E+02 0.01 23.9 9.1 51 210-261 141-195 (225)
166 PF06546 Vert_HS_TF: Vertebrat 27.4 73 0.0016 29.9 3.7 42 12-57 120-163 (265)
167 PRK10622 pheA bifunctional cho 27.3 3.6E+02 0.0078 26.6 8.7 56 219-278 305-361 (386)
168 PF04420 CHD5: CHD5-like prote 27.0 1.7E+02 0.0038 25.0 5.7 54 106-170 37-90 (161)
169 PF11336 DUF3138: Protein of u 26.8 75 0.0016 32.1 3.7 25 146-170 25-49 (514)
170 cd04916 ACT_AKiii-YclM-BS_2 AC 26.6 2.1E+02 0.0046 19.4 6.2 25 220-245 13-37 (66)
171 COG0077 PheA Prephenate dehydr 26.0 3.5E+02 0.0075 25.7 7.9 61 214-278 197-258 (279)
172 COG1828 PurS Phosphoribosylfor 25.3 3.3E+02 0.0071 21.2 6.7 61 215-283 5-70 (83)
173 PF02700 PurS: Phosphoribosylf 25.1 2.8E+02 0.006 21.1 5.9 61 215-283 4-69 (80)
174 cd04912 ACT_AKiii-LysC-EC-like 24.9 2.7E+02 0.0059 20.1 7.7 24 220-244 13-36 (75)
175 PF15392 Joubert: Joubert synd 24.7 2E+02 0.0044 27.7 6.1 60 99-158 52-116 (329)
176 PHA03386 P10 fibrous body prot 24.4 1.6E+02 0.0036 23.3 4.5 33 135-167 1-33 (94)
177 PF01545 Cation_efflux: Cation 24.1 3.6E+02 0.0077 24.4 7.6 61 223-283 205-267 (284)
178 PF02577 DNase-RNase: Bifuncti 23.3 3.4E+02 0.0074 22.3 6.7 47 221-268 51-98 (135)
179 PF06305 DUF1049: Protein of u 22.6 73 0.0016 22.7 2.2 18 151-168 46-63 (68)
180 PRK14637 hypothetical protein; 22.3 3.9E+02 0.0084 22.8 6.9 57 220-280 6-65 (151)
181 cd04918 ACT_AK1-AT_2 ACT domai 22.2 2.6E+02 0.0057 19.6 5.1 27 220-247 12-38 (65)
182 TIGR01270 Trp_5_monoox tryptop 22.0 3.8E+02 0.0081 27.4 7.7 50 213-263 33-84 (464)
183 PF13591 MerR_2: MerR HTH fami 21.8 1.4E+02 0.0031 22.6 3.8 24 143-166 60-83 (84)
184 COG2716 GcvR Glycine cleavage 21.5 2.4E+02 0.0052 24.9 5.5 66 212-278 93-161 (176)
185 PLN02317 arogenate dehydratase 21.2 4.5E+02 0.0097 26.1 7.9 44 219-263 291-349 (382)
186 PF00585 Thr_dehydrat_C: C-ter 21.1 2.4E+02 0.0052 21.7 5.0 70 209-289 8-80 (91)
187 PLN02705 beta-amylase 20.7 1.6E+02 0.0035 31.1 4.9 29 100-128 81-109 (681)
188 PF07544 Med9: RNA polymerase 20.7 3.7E+02 0.008 20.4 5.9 49 117-167 32-80 (83)
189 COG0440 IlvH Acetolactate synt 20.5 3.4E+02 0.0073 23.7 6.2 50 213-263 6-55 (163)
190 TIGR01834 PHA_synth_III_E poly 20.0 3.3E+02 0.0071 26.4 6.6 47 118-168 272-318 (320)
191 PF13870 DUF4201: Domain of un 20.0 5.6E+02 0.012 21.9 8.2 59 108-169 114-175 (177)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=2.5e-13 Score=97.56 Aligned_cols=54 Identities=35% Similarity=0.564 Sum_probs=50.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCC---CCCChhcHHHHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYALRALVPNI---TKMDKASIVGDAVLYVQDLQMKA 155 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~yI~~Lq~~~ 155 (293)
..+..|+..||+||++||..|..|+++||.. .|++|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999987 89999999999999999999875
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.42 E-value=2.6e-13 Score=96.64 Aligned_cols=50 Identities=38% Similarity=0.607 Sum_probs=46.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhcHHHHHHHHHHHHH
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPNI-----TKMDKASIVGDAVLYVQDLQ 152 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-----~K~dKasIL~~Ai~yI~~Lq 152 (293)
+|..|+..||+||++||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999999975 68899999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=2.2e-12 Score=90.71 Aligned_cols=49 Identities=39% Similarity=0.560 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHHHHHH
Q 042663 108 LISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQMKAK 156 (293)
Q Consensus 108 ~~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq~~~~ 156 (293)
+..||+||++||+.|..|+++||. ..|++|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999995 6789999999999999999998875
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.14 E-value=4.4e-11 Score=104.27 Aligned_cols=72 Identities=28% Similarity=0.394 Sum_probs=64.7
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 98 KKPKVDRSRALISERRRRGKMKEKLYALRALVPNI-------TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 98 ~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~-------~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
..+.++|..|...||+||+.||..+..|+.|||.+ .|.+||.||.++|+||.+|++++.+.+++...|++.+
T Consensus 57 syk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~v 135 (229)
T KOG1319|consen 57 SYKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDV 135 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999999999999953 4788999999999999999999999999988887655
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.13 E-value=2.3e-10 Score=111.12 Aligned_cols=61 Identities=25% Similarity=0.461 Sum_probs=54.4
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC----CCCChhcHHHHHHHHHHHHHHHHHH
Q 042663 97 TKKPKVDRSRALISERRRRGKMKEKLYALRALVPNI----TKMDKASIVGDAVLYVQDLQMKAKK 157 (293)
Q Consensus 97 ~~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~yI~~Lq~~~~~ 157 (293)
..|.+.+|..|+..|||||++||+++.+|..|||.+ .|..|..||..+++||+.||+..++
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 456668899999999999999999999999999986 4677999999999999999986663
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.49 E-value=7.2e-07 Score=81.34 Aligned_cols=68 Identities=26% Similarity=0.380 Sum_probs=55.2
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC--CCCC-hhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 98 KKPKVDRSRALISERRRRGKMKEKLYALRALVPNI--TKMD-KASIVGDAVLYVQDLQMKAKKLKTEIADL 165 (293)
Q Consensus 98 ~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~K~d-KasIL~~Ai~yI~~Lq~~~~~L~~~~~~l 165 (293)
......|..|+..||+||+.|++.|..|+.+||.. .+.. .++||.+|..||+.|+.+.......++.|
T Consensus 54 ~~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 54 SSAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 34557899999999999999999999999999973 3333 79999999999999998665555544443
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.38 E-value=2e-07 Score=85.98 Aligned_cols=56 Identities=27% Similarity=0.434 Sum_probs=48.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhcHHHHHHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYALRALVPN--------ITKMDKASIVGDAVLYVQDLQMKAKK 157 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~--------~~K~dKasIL~~Ai~yI~~Lq~~~~~ 157 (293)
.++..|-+.||+||+|||..+.+|+.|||. .+|++||.||+-|++|++.||..-..
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 456677889999999999999999999994 27889999999999999999875433
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.29 E-value=7e-07 Score=93.39 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=50.4
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC----CCCChhcHHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALVPNI----TKMDKASIVGDAVLYVQDLQMK 154 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~yI~~Lq~~ 154 (293)
+++..|..|+.+|||||++||..+.+|.+|||.+ -|+||.+||.+||.+|+.++..
T Consensus 16 k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 16 KDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3444599999999999999999999999999975 5999999999999999988774
No 9
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.21 E-value=6.4e-07 Score=83.52 Aligned_cols=67 Identities=28% Similarity=0.422 Sum_probs=55.9
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHhccCCC--CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 100 PKVDRSRALISERRRRGKMKEKLYALRALVPN--ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 100 ~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~--~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
++-+|..-|.-||+|=.-||..|..||+|+|. ..|.+||.||+.+.+||.+|+.+.-+|-.++.+|+
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elK 125 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELK 125 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHH
Confidence 33456667788999999999999999999996 68999999999999999999987666655554444
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.16 E-value=8.9e-07 Score=93.04 Aligned_cols=65 Identities=35% Similarity=0.536 Sum_probs=61.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCC-CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYALRALVPN-ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~-~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
.+|..||++||+.|..||+++.+|+.+||+ ..|..|..+|..||+||++|+...+.++.+++.++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 679999999999999999999999999998 57999999999999999999999999999998877
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=2.9e-05 Score=59.05 Aligned_cols=67 Identities=10% Similarity=0.196 Sum_probs=53.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
+|+|.|+.|||||.+|..+|-.+ |+.|.+|.|+|.++++.=+|.+.-. .+..+.-+...+.|..+|+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~-~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDM-DYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhC-CeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHH
Confidence 68999999999999999999999 8999999999999999888888653 3444544444444444443
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=2.9e-05 Score=59.09 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=52.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccCh----HHHHHHHHHHHh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHL----TNMKLWVTKALV 281 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~----~~Lk~~i~~all 281 (293)
+|+|.|..|||+|.+|.++|..+ |++|..|.|+ |.|+++.-+|.+. ..+..+.- ..|+.++..+|.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~-~l~i~~AkI~~~T~Gerv~D~Fyv~--~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDC-NIQISYGRFSSKVKGYREVDLFIVQ--SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHC-CeEEEEEEEecCcccCEEEEEEEEe--CCCCccCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999 8999999999 9999999999883 33333533 345555555443
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=3.1e-05 Score=58.44 Aligned_cols=67 Identities=15% Similarity=0.269 Sum_probs=55.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
+|+|.++.|||+|.+|.++|..+ |++|..|.|+|.|+++.-+|.+.-. ++..+.-+.....|+.+|+
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~-gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDL-DLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHC-CcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHhc
Confidence 68999999999999999999999 9999999999999999999888643 4455544555667777764
No 14
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.10 E-value=5.7e-05 Score=69.14 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=53.8
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH-hccCCC-CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYAL-RALVPN-ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~L-rslvP~-~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
-+|..-.++||+|=.|+|+.|.+| |.-.++ ...+-|..||..||+||..||.-++++-+....++
T Consensus 117 DRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~~ 183 (284)
T KOG3960|consen 117 DRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGLA 183 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence 456666789999999999999999 556666 45678999999999999999998888876655554
No 15
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.01 E-value=6.7e-05 Score=56.77 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=50.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeee-eCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT-VSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst-~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
++++|.|+.++|+|+++..+|..+ |++|+.|.+.+ .++.++-+|.+.-. .+. ...+.....+..+|.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~-~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~ 68 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYEL-ELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLR 68 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHC-CCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHH
Confidence 468999999999999999999999 89999999996 77888888887532 222 333344445555554
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=0.00015 Score=54.12 Aligned_cols=69 Identities=16% Similarity=0.128 Sum_probs=52.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
..|.|.|+.++|+|.+|..+|..+ |++|++|.+.|.+ +.++-+|.+.- ..+..+..+...+.+..+|.+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~-~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQL-GLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALED 71 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHC-CCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHh
Confidence 367899999999999999999999 8999999998885 67777777753 333444444445556666543
No 17
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=0.00016 Score=54.24 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=51.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
+|+|.++.+||+|.+|..+|..+ |++|+.|.+.+.++.+..+|.+.-...+..+..+.-..+++.+|.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~-~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~ 69 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADL-HCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLD 69 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHC-CCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999 899999999999999888887753221232333333445555543
No 18
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.80 E-value=6.8e-05 Score=57.91 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhccCCC------CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 116 GKMKEKLYALRALVPN------ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 116 ~~in~~~~~LrslvP~------~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
+.|++.+..|+.|+|. ..|.+-+-+|+++..||+.|++++..|.+++.+|-..
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6799999999999995 2455666799999999999999999999999998764
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0019 Score=46.81 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=50.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
.|.|.++.++|+|.+|+.+|.++ +++|.++.+.+.++.+..+|.+.-..+.. ++.. ....+..+|.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~-~~~~i~~~l~ 67 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAEL-GLNIHSAKIATLGERAEDVFYVTDADGQP-LDPE-RQEALRAALG 67 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHC-CCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHH-HHHHHHHHHH
Confidence 57899999999999999999999 89999999998888777788777544433 4443 3334555554
No 20
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.45 E-value=0.0013 Score=49.44 Aligned_cols=72 Identities=15% Similarity=0.273 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
.++|.+.+++|||++..|.++|... |.+|..++.++.++.|...+.+.+. .-+...|+..+....-..|+++
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~-g~ni~d~~~~~~~~~f~~~~~v~~~----~~~~~~l~~~L~~l~~~~~l~v 73 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEH-GCNIEDSRQAVLGGRFTLIMLVSIP----EDSLERLESALEELAEELGLDV 73 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCT-T-EEEEEEEEEETTEEEEEEEEEES----HHHHHHHHHHHHHHHHHTT-EE
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHC-CCcEEEEEEEEEcCeEEEEEEEEeC----cccHHHHHHHHHHHHHHCCcEE
Confidence 4789999999999999999999999 8999999999999998888777664 2256788888888777777654
No 21
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.42 E-value=0.00014 Score=66.09 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=51.8
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccCCC----CCCCChhcHHHHHHHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALVPN----ITKMDKASIVGDAVLYVQDLQMKAKKLK 159 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~----~~K~dKasIL~~Ai~yI~~Lq~~~~~L~ 159 (293)
.....|..++.+||+|=..+|..|..||.+||. ..|.+|..+|.-||.||++|+.-++.-.
T Consensus 105 ~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 105 QTSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred chhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 344566777888999999999999999999995 4678999999999999999987665544
No 22
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0025 Score=47.61 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=48.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecCCcccChHHHHHHHHHHH
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMHLTNMKLWVTKAL 280 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~~~~Lk~~i~~al 280 (293)
.|-|.|+.++|+|+++..+|..+ |++|+.|.+.+..+ .++-+|.+.-..++ +...|..++..||
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~-~LnI~~A~i~tt~dG~~LDtF~V~d~~~~---~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDL-GLNIAEAHAFSTDDGLALDIFVVTGWKRG---ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHC-CCceEEEEEEEcCCCeEEEEEEEecCCcc---chHHHHHHHHHhh
Confidence 57789999999999999999999 89999999987764 55556665432222 2356777777665
No 23
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.34 E-value=0.0026 Score=47.98 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=57.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
+.|.+.|+.++|+...|.+.|.+. |.+|..++....++.|++.+.+.+. ..+...|+..+....-..|++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~-g~nI~d~~q~~~~~~F~m~~~~~~~----~~~~~~l~~~l~~~~~~~~l~ 71 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSES-GCNILDSRMAILGTEFALTMLVEGS----WDAIAKLEAALPGLARRLDLT 71 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHc-CCCEEEceeeEEcCEEEEEEEEEec----cccHHHHHHHHHHHHHHcCCE
Confidence 578999999999999999999999 9999999999888998877777653 246778888887755555554
No 24
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0034 Score=46.70 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=48.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHH
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKAL 280 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~al 280 (293)
..|.|.++.++|+|.+|..+|.++ |++|+++.+.+.++..+.+|++.-. ....++. +...+++.+|
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~-~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~~~-~~~~~l~~~l 67 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFREN-GLTVTRAEISTQGDMAVNVFYVTDA-NGNPVDP-KTIEAVRQEI 67 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHC-CcEEEEEEEecCCCeEEEEEEEECC-CCCcCCH-HHHHHHHHHh
Confidence 467889999999999999999999 8999999998887766666666432 2233333 3444566555
No 25
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.05 E-value=0.0077 Score=45.06 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC------CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS------EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~------~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
|.|.|+.++|++.+|-+.|... |++|...+..+.+ +.|...+.+.+. ...+...|+.++...-.+.|+++
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p---~~~~~~~l~~~l~~l~~~~~~~~ 77 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQR-NINIEDLSTETYSAPMSGTPLFKAQATLALP---AGTDLDALREELEELCDDLNVDI 77 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CCCeEEeEeeeecCCCCCcceEEEEEEEecC---CCCCHHHHHHHHHHHHHHhcceE
Confidence 6899999999999999999999 8999999988877 566666666553 25678899999988766666553
No 26
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0071 Score=46.49 Aligned_cols=72 Identities=13% Similarity=0.231 Sum_probs=57.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
+.|.+.|+++||+++.|.+.|-.. |.+|..++..+.++.|.+.+.+... ....+...|+..+....-..|.+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~-g~nI~~~~~~~~~~~f~~~~~v~~~--~~~~~~~~L~~~l~~l~~~~~l~ 73 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAEL-NVNILDISQTIMDGYFTMIMIVDIS--ESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHc-CCCEEechhHhhCCccEEEEEEEeC--CCCCCHHHHHHHHHHHHHHcCCE
Confidence 578999999999999999999999 8999999988877887777666653 22566788888888765555544
No 27
>PRK00194 hypothetical protein; Validated
Probab=96.87 E-value=0.0078 Score=46.28 Aligned_cols=73 Identities=11% Similarity=0.193 Sum_probs=57.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.|.|+++||++..|.+.|-+. |++|...+..+.++.+...+.+... ....+...|+..+...--..|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~-g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAEL-NVNILDISQTIMDGYFTMIMLVDIS--ESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHc-CCCEEehhhHhhCCeeEEEEEEEec--CCCCCHHHHHHHHHHHHHHcCCE
Confidence 4689999999999999999999999 9999999988877877777666653 22345678888877755454544
No 28
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.84 E-value=0.021 Score=40.86 Aligned_cols=67 Identities=15% Similarity=0.265 Sum_probs=48.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.|.|.|+.++|+|.+|+.+|.++ |+.|.++.+.+.++.....|.+.-..+.. +. ..-...+...|.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADL-GLNIHDARISTTGERALDVFYVTDSDGRP-LD-PERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHC-CCeEEEEEEeecCCEEEEEEEEECCCCCc-CC-HHHHHHHHHHHHh
Confidence 47889999999999999999999 89999999888766555566655432222 32 2444456666543
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.78 E-value=0.0075 Score=65.00 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=56.0
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccC---hHHHHHHHHHHH
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMH---LTNMKLWVTKAL 280 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~---~~~Lk~~i~~al 280 (293)
+.-..|+|.|..|||+|.+|.++|..+ |++|.+|-|+|.++++.-+|.+.-. .+.-++ ...|+.++..+|
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~-~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADL-GISLHGARITTIGERVEDLFILATA-DRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHC-CcEEEEEEEeccCceEEEEEEEEcC-CCCcCCHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999 8999999999999999999988643 334455 235555555555
No 30
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.02 Score=42.43 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=48.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.|.|.|+.++|++.+|.+.|-++ |+++...+..+. ++.|... +++......++...|+..+...--.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~-g~nI~~~~~~~~~~~~~f~~~--~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEH-GGNIVESDQFVDPDSGRFFMR--VEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHc-CCCEEeeeeeecCCCCeEEEE--EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999 999999987753 2344333 4443332236677888877765433
No 31
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.70 E-value=0.016 Score=43.29 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=58.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
|.|.+++|||+..++.++|-++ |.+|...+.++.++.|.+.+.+.+. ..++...|+..+.......|.+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~-~~nI~dl~~~~~~~~f~~~~~v~~p---~~~~~~~l~~~l~~l~~~l~l~i 71 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAH-GVRILDVGQAVIHGRLSLGILVQIP---DSADSEALLKDLLFKAHELGLQV 71 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC-CCCEEecccEEEcCeeEEEEEEEcC---CCCCHHHHHHHHHHHHHHcCceE
Confidence 6889999999999999999999 8999999888888888777766653 23678899999988877777653
No 32
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.54 E-value=0.03 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=48.6
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee-----CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcC
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV-----SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL 288 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~-----~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~ 288 (293)
+.|.++.+||.|.+|+++|.+. |++|.+...... .+.....|++++.. ...+ ..+...|.+.|+.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~-~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~------~~~l-~~l~~~l~~~g~~~~ 72 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEA-GANIIEVSHDRAFKTLPLGEVEVELTLETRG------AEHI-EEIIAALREAGYDVR 72 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHc-CCCEEEEEEEeccCCCCCceEEEEEEEEeCC------HHHH-HHHHHHHHHcCCEEe
Confidence 3578899999999999999999 899998876543 24455566666621 2233 477778888888653
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.47 E-value=0.024 Score=40.03 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=35.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE 250 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~ 250 (293)
+.|.|.|+.+||+|.+|.++|-.+ |++|..+...+..+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~-~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADH-GINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHT-TEEEEEEEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-CCCHHHeEEEecCC
Confidence 368899999999999999999999 89999999988876
No 34
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.46 E-value=0.025 Score=42.36 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEee
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVR 261 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~ 261 (293)
.+.|+|.+..++|+|.+|..++.+. |+.|.+.++... ++.+...|+++|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~-~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISEN-GVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCS-SSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHC-CCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 3678999999999999999999999 899999999885 5678889999985
No 35
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.38 E-value=0.028 Score=60.76 Aligned_cols=72 Identities=11% Similarity=0.184 Sum_probs=57.4
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccC----hHHHHHHHHHHHhh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMH----LTNMKLWVTKALVN 282 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~----~~~Lk~~i~~all~ 282 (293)
.+...|.|.+..+||+|++|..+|..+ |++|+.|.|.|.++.++-+|.+.-..+. .+. ...|+.+|..+|..
T Consensus 812 ~~~T~i~V~a~DrpGLLa~I~~~L~~~-~l~I~~AkI~T~g~~v~D~F~V~d~~g~-~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 812 RPVTVLEIIAPDRPGLLARIGRIFLEF-DLSLQNAKIATLGERVEDVFFITDADNQ-PLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred CCeEEEEEEECCCCCHHHHHHHHHHHC-CCEEEEeEEEecCCEEEEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999 8999999999999999889888643332 332 24567777766643
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.25 E-value=0.036 Score=59.76 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=55.2
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.+-..|.|.+..+||+|.+|..+|..+ |++|..|.|+|.++++.-+|.+.-..+. .+..... ..|..+|+.
T Consensus 794 ~~~t~leI~a~DrpGLLa~Ia~~l~~~-~l~I~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~~~-~~l~~~L~~ 864 (869)
T PRK04374 794 GRRTRISLVAPDRPGLLADVAHVLRMQ-HLRVHDARIATFGERAEDQFQITDEHDR-PLSESAR-QALRDALCA 864 (869)
T ss_pred CCeEEEEEEeCCcCcHHHHHHHHHHHC-CCeEEEeEEEecCCEEEEEEEEECCCCC-cCChHHH-HHHHHHHHH
Confidence 345899999999999999999999999 8999999999999999999988643332 2333222 555555544
No 37
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.01 E-value=0.036 Score=59.64 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=55.8
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
+.-..|+|.+..+||+|.+|.++|.++ |++|.+|-|+|.++++.-+|.+.-. .+.-++-.. +..|..+|+.
T Consensus 781 ~~~T~iev~a~DrpGLL~~I~~~l~~~-~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~-~~~l~~~L~~ 851 (854)
T PRK01759 781 QEQTEMELFALDRAGLLAQVSQVFSEL-NLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEE-RKALKSRLLS 851 (854)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHC-CCEEEEEEEcccCceEEEEEEEECC-CCCcCChHH-HHHHHHHHHH
Confidence 345889999999999999999999999 9999999999999999999888643 333444322 2555555543
No 38
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.01 E-value=0.034 Score=59.83 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=45.6
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEE
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTS 258 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~ 258 (293)
.+-..|.|.+..+||+|.+|..+|..+ |++|++|.|.|.++.+.-+|.+
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~-~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEH-RVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHC-CCeEEEEEEeecCCEEEEEEEE
Confidence 345789999999999999999999999 8999999999999998888887
No 39
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.88 E-value=0.059 Score=57.40 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=56.0
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
+-..|.|.+..+||+|.+|..+|..+ |++|++|.|.|.++.++-+|.+.- .++..+.-. ...|..+|+
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~-~lnI~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERA-GVDVRWARVATLGADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHC-CCeEEEEEEeecCCeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 35899999999999999999999999 899999999999999888888764 234444322 677777775
No 40
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.86 E-value=0.068 Score=58.04 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=56.1
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccCh----HHHHHHHHHHHh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHL----TNMKLWVTKALV 281 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~----~~Lk~~i~~all 281 (293)
+....|.|.|..+||+|.+|..+|..+ |++|.+|.|.|.++++.-+|.+.-..+ ..+.. ..|+..+..+|.
T Consensus 841 ~~~t~i~I~~~DrpGLl~~I~~~l~~~-gl~I~~A~I~T~~~~~~D~F~v~d~~g-~~i~~~~~~~~l~~~L~~~L~ 915 (931)
T PRK05092 841 NRFTVIEVNGRDRPGLLYDLTRALSDL-NLNIASAHIATYGERAVDVFYVTDLFG-LKITNEARQAAIRRALLAALA 915 (931)
T ss_pred CCeEEEEEEECCcCcHHHHHHHHHHHC-CceEEEEEEEEcCCEEEEEEEEeCCCC-CcCCCHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999 899999999999999888888864322 23322 456666666663
No 41
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.059 Score=39.70 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=49.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHH
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKA 279 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~a 279 (293)
.|.|.|+.+.|+-.+|.+.+-+. ||.|....++|.|.=-+..|.+........+.-..||.++..+
T Consensus 2 vitvnCPDktGLgcdlcr~il~f-Gl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEF-GLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHh-ceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 58999999999999999999999 9999999999765533334444433333455667888877654
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.75 E-value=0.063 Score=57.17 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=58.8
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.+.+.|.|+|..+||++++|..+|..+ |++|+.|.+.+.+|.++-+|.+.-. .+.......++..|..+|..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~-glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALH-RLRVRSASVRSHDGVAVLEFVVSPR-FGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHC-CCeEEEeEEEecCCEEEEEEEEECC-CCCcchHHHHHHHHHHHHcC
Confidence 356889999999999999999999999 9999999999967777777776532 22334457888999888866
No 43
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.73 E-value=0.0083 Score=59.87 Aligned_cols=60 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccCCC---C-CCCChhcHHHHHHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALVPN---I-TKMDKASIVGDAVLYVQDLQMKAKKL 158 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~---~-~K~dKasIL~~Ai~yI~~Lq~~~~~L 158 (293)
|.+.+|..++.+||.|=..||+.|.+|..+.-- . ....|.-||-.||.-|-.|++||++-
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 334567888999999999999999999887542 2 23468999999999999999998763
No 44
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.28 E-value=0.094 Score=56.35 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=54.0
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
..-..|.|.|..+||+|.+|.++|..+ |++|.++.+.|.+++..-+|.+.-..+ .-++- ..+..|..+|+
T Consensus 777 ~~~t~~~v~~~DrpGll~~i~~~l~~~-~~~i~~a~i~t~~~~~~d~F~v~~~~g-~~~~~-~~~~~l~~~L~ 846 (850)
T TIGR01693 777 RKATIMEVRALDRPGLLARVGRTLEEL-GLSIQSAKITTFGEKAEDVFYVTDLFG-LKLTD-EEEQRLLEVLA 846 (850)
T ss_pred CCeEEEEEEECCccHHHHHHHHHHHHC-CCeEEEEEEEecCccceeEEEEECCCC-CCCCH-HHHHHHHHHHH
Confidence 345889999999999999999999999 899999999999998888888765332 22332 34444555444
No 45
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.12 Score=37.66 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=40.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEee
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVR 261 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~ 261 (293)
|+|.+..++|+|.+|+.+|.+. |.+|...+..... +.....|++++.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEA-GGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-CCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 6889999999999999999999 8999998887654 566677777774
No 46
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.18 E-value=0.19 Score=36.30 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=48.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLT 289 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~~ 289 (293)
..+.|..+.++|.|.++++.|.+. |++|.+....... +.....|++.. ... ..+..+|.+.||.++=
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~-~inI~~i~~~~~~~~~~~~v~i~v~~--~~~--------~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDR-GVNIVSVLVYPSKEEDNKILVFRVQT--MNP--------RPIIEDLRRAGYEVLW 70 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHc-CCCEEEEEEeccCCCCeEEEEEEEec--CCH--------HHHHHHHHHCCCeeeC
Confidence 467888999999999999999999 8999977644331 33344555443 211 2677778888998764
Q ss_pred C
Q 042663 290 P 290 (293)
Q Consensus 290 ~ 290 (293)
+
T Consensus 71 ~ 71 (72)
T cd04883 71 P 71 (72)
T ss_pred C
Confidence 3
No 47
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.15 E-value=0.1 Score=36.73 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=44.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcC
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL 288 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~ 288 (293)
|.|.-+.++|.|.+++..|.+. |++|.+....... +.... .+.++. ...+..+|.+.||.++
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~-~~nI~~i~~~~~~~~~~~~v--~~~ve~----------~~~~~~~L~~~G~~v~ 65 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEE-GINIEYMYAFVEKKGGKALL--IFRTED----------IEKAIEVLQERGVELV 65 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHC-CCChhheEEEccCCCCeEEE--EEEeCC----------HHHHHHHHHHCCceEC
Confidence 5677789999999999999999 8999876654333 33333 344432 4477778888898764
No 48
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.13 E-value=0.15 Score=54.74 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=57.3
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee-eeCCeEEEEEEEEeecCCcccC----hHHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT-TVSEKFVLTFTSSVRGSDQNMH----LTNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs-t~~~~~~~t~~~kv~~~e~~i~----~~~Lk~~i~~all~~ 283 (293)
.+...|.|.++.++|+|.+|..+|..+ |++|+.|.|. +.+|.++-+|.+.-..+. .+. +..|+..+..+|...
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~-~l~I~~A~I~tt~~g~~lD~F~V~~~~g~-~~~~~~~~~~i~~~L~~~L~~~ 743 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAML-SLSVHDAQVNTTKDGVALDTFVVQDLFGS-PPAAERVFQELLQGLVDVLAGL 743 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEEEEEecCCEEEEEEEEECCCCC-CCCcHHHHHHHHHHHHHHHcCC
Confidence 356789999999999999999999999 8999999998 556777778887654332 232 345777888888654
No 49
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.11 Score=55.28 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=58.1
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
.+..+++|.+..|||+|..|..+|..+ +++|++|.|+|+|.++.=+|.+... .+..+ -..+++.+.++++.+
T Consensus 789 ~~~t~lEv~alDRpGLLa~v~~v~~dl-~l~i~~AkItT~GErveD~F~vt~~-~~~~l-~~~~~q~l~~~ll~a 860 (867)
T COG2844 789 NDKTVLEVRALDRPGLLAALAGVFADL-GLSLHSAKITTFGERVEDVFIVTDA-DGQAL-NAELRQSLLQRLLEA 860 (867)
T ss_pred CCceEEEEEeCCcccHHHHHHHHHHhc-ccceeeeeeccccccceeEEEEecc-ccccC-CHHHHHHHHHHHHHH
Confidence 346889999999999999999999999 8999999999999988888877664 34444 345666666666554
No 50
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.99 E-value=0.014 Score=50.04 Aligned_cols=50 Identities=30% Similarity=0.422 Sum_probs=46.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCC--CCCCChhcHHHHHHHHHHHHH
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPN--ITKMDKASIVGDAVLYVQDLQ 152 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~--~~K~dKasIL~~Ai~yI~~Lq 152 (293)
+|--|++.||+|=..+|+.|..||.++|. ..|.+|..-|+-|..||-.|=
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~ 129 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLY 129 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhh
Confidence 57779999999999999999999999996 678999999999999999883
No 51
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=94.50 E-value=0.36 Score=34.77 Aligned_cols=62 Identities=18% Similarity=0.178 Sum_probs=46.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
.|.|..+.+||.|.+|+++|.+. |++|.+.-+...++. ..+++.+. + ..++..+|.+.||.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~-~inI~~i~~~~~~~~--~~~rl~~~-~---------~~~~~~~L~~~G~~v 64 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEA-GINIRALSIADTSEF--GILRLIVS-D---------PDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHC-CCCEEEEEEEecCCC--CEEEEEEC-C---------HHHHHHHHHHCCCEE
Confidence 46778899999999999999999 899998876555452 45555552 2 236778888889875
No 52
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.36 E-value=0.24 Score=46.83 Aligned_cols=74 Identities=11% Similarity=0.186 Sum_probs=57.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.|.|++++|+.+.|-+.|-+. |.+|+.++-. +..+.|+..+.+... ....++...|+.++...-..-|.+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~-g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~~~~~l~~~l~~l~~~l~l~ 84 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEK-GCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAASVDTFRQEFQPVAEKFDMQ 84 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHC-CCCEEecccccccccCcEEEEEEEEcC-CCCCCCHHHHHHHHHHHHHHhCCe
Confidence 4689999999999999999999999 9999998864 455677666555432 233678889999888866655544
No 53
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.36 E-value=0.34 Score=34.85 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=44.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-C-eEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-E-KFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~-~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
.+.|.++.++|.|.++++.|.+. |++|......... + .-...|.+++. .-..++..+|...||.+
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~-~i~i~~~~~~~~~~~~~~~~~i~v~~~---------~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDA-GISIKNIEILEIREGIGGILRISFKTQ---------EDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCceeeEeEEeecCCcEEEEEEECCH---------HHHHHHHHHHHHcCCcC
Confidence 46788999999999999999999 8999987655542 1 11223333321 12346777777788863
No 54
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.28 E-value=0.41 Score=51.84 Aligned_cols=73 Identities=11% Similarity=0.121 Sum_probs=56.0
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecCCcccCh---HHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMHL---TNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~~---~~Lk~~i~~all~~ 283 (293)
.+...|.|+|+.++|+|.+|..+|..+ |++|+.|.|.|.++ .++-+|.+.-.. +..++. ..|+..|..+|...
T Consensus 699 ~~~t~V~V~a~DrpGLfa~Ia~~La~~-~L~I~~A~I~T~~dg~alD~F~V~d~~-g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 699 RGGTEIFIWSPDRPYLFAAVCAELDRR-NLSVHDAQIFTSRDGMAMDTFIVLEPD-GSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCeEEEEEEecCCcCHHHHHHHHHHHC-CCEEEEEEEEEcCCCeEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 89999999988776 666677665322 222332 45788888888554
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.25 E-value=0.26 Score=35.93 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=38.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEee
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVR 261 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~ 261 (293)
.+.|.+..++|++.+|+++|.+. |.+|...+..... +.+...|++.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~-~inI~~i~~~~~~~~~~~i~~~v~v~ 50 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQV-RGNVLTINQNIPIHGRANVTISIDTS 50 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHc-CCCEEEEEeCCCCCCeEEEEEEEEcC
Confidence 57889999999999999999999 8999998765433 556667777764
No 56
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.22 E-value=0.41 Score=34.38 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=37.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEe
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSV 260 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv 260 (293)
++|.|.+..++|++.+++..|... |.++.+.+..... +.....+.+.+
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~-~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEH-GISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHc-CCCeEEEEEcccCCCCceeEEEEEcc
Confidence 478999999999999999999999 8999988765543 44445555544
No 57
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.97 E-value=0.5 Score=51.04 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=56.4
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeee-eCCeEEEEEEEEeecCCcccCh---HHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT-VSEKFVLTFTSSVRGSDQNMHL---TNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst-~~~~~~~t~~~kv~~~e~~i~~---~~Lk~~i~~all~~ 283 (293)
.+...|.|.|+.++|+|++|..+|..+ |++|+.|.|.| .+|.++-+|.+.-. ++..+.. ..|+..|..+|...
T Consensus 675 ~~~t~V~V~~~DrpGLfa~Ia~~L~~~-~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 675 RGGTEIFIYCQDQANLFLKVVSTIGAK-KLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLEFDRRRQLEQALTKALNTN 751 (854)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHC-CCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHcCC
Confidence 456799999999999999999999999 89999999977 66777778877532 2233332 35777777777544
No 58
>PRK04435 hypothetical protein; Provisional
Probab=93.79 E-value=0.38 Score=40.91 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=44.4
Q ss_pred EeCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee-CCeEEEEEEEEee
Q 042663 207 VEERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV-SEKFVLTFTSSVR 261 (293)
Q Consensus 207 v~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~-~~~~~~t~~~kv~ 261 (293)
..++.+.|.+.+..++|+|.+|+++|... |.+|...+.... ++....+|++++.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~-~aNIltI~q~i~~~g~a~vs~tVevs 119 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEA-GGNILTINQSIPLQGRANVTISIDTS 119 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHc-CCCeEEEEEEcCCCCEEEEEEEEEeC
Confidence 34788999999999999999999999999 899998876443 4556677777774
No 59
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.76 E-value=0.51 Score=44.51 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=56.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeee--eCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT--VSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst--~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.|.|++|+|+...|.++|-++ |.+|..++.++ .++.|...+.+.+ .....+...|+.++...--..|.+
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~-g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEH-GGNIVDADQFVDPETGRFFMRVEFEG--DGLIFNLETLRADFAALAEEFEMD 80 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHC-CCCEEEceeEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHHHHhCCE
Confidence 4789999999999999999999999 99999999888 7776666655554 223345778888887665555544
No 60
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.73 E-value=0.61 Score=50.78 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=53.8
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecCCcccC---hHHHHHHHHHHHhh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMH---LTNMKLWVTKALVN 282 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~---~~~Lk~~i~~all~ 282 (293)
+...|.|.|..++|+|.+|..+|..+ |++|+.|.+.+..+ .++-+|.+.-..+....+ ...|+..|..++..
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~-glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~ 806 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAA-GANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSG 806 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHC-CCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999 89999999988655 445556665433322122 45677778777754
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.64 E-value=0.62 Score=34.38 Aligned_cols=45 Identities=7% Similarity=0.227 Sum_probs=37.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEee
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVR 261 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~ 261 (293)
.|+|.|..++|++.+|+.++.+. +.++.+.++.+. +. ..|++++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~-~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEH-NIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHC-CCceEEEEEecC-Ce--EEEEeEec
Confidence 57899999999999999999999 899999998654 33 55666664
No 62
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.40 E-value=0.53 Score=51.06 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=54.2
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCc-ccC---hHHHHHHHHHHHhhc
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQ-NMH---LTNMKLWVTKALVNQ 283 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~-~i~---~~~Lk~~i~~all~~ 283 (293)
+...|.|.|..++|+|++|..+|..+ |++|+.|.|.+.. |.++-+|.+.-..+.. ... ...|+..|..+|...
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~-~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQL-NLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 56889999999999999999999999 8999999986655 4555677665433322 112 245777787777544
No 63
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.37 E-value=0.57 Score=30.00 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=30.1
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS 249 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~ 249 (293)
|.|.|+..+|.+.+++.+|... ++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~-~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEA-GINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHC-CCcEEEEEeEEcC
Confidence 4678889999999999999999 8999998876543
No 64
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.00 E-value=0.55 Score=50.80 Aligned_cols=74 Identities=8% Similarity=0.166 Sum_probs=56.1
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
.+...|.|.|..++|+|++|..+|..+ |++|+.|.|.+.. |.++-+|.+.-..+...-....++..|..+|...
T Consensus 688 ~~~~~v~v~~~d~~gLFa~i~g~l~~~-~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~ 762 (869)
T PRK04374 688 NDALEVFVYSPDRDGLFAAIVATLDRK-GYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGD 762 (869)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHHHC-CCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCC
Confidence 356889999999999999999999999 8999999998755 5666677765322221222456788888888664
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=92.93 E-value=0.74 Score=43.36 Aligned_cols=65 Identities=11% Similarity=0.207 Sum_probs=51.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEeecCCcccChHHHHHHHHHHH
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKAL 280 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~al 280 (293)
.|.|.|++++|+.+.|-+.|-+. |.+|+.++-+.. ++.|++.+.+.+ .+..++...|+.++..++
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~-g~NI~d~sq~~~~~~~~F~mr~~v~~--~~~~~~~~~l~~~l~~~~ 68 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKH-GANIISNDQHTDPETGRFFMRVEFQL--EGFRLEESSLLAAFKSAL 68 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHC-CCCEEeeeEEEcCCCCeEEEEEEEEe--CCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999 999999996663 367766555444 333467889998888844
No 66
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.50 E-value=0.82 Score=49.42 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=54.0
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccC---hHHHHHHHHHHHhhc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMH---LTNMKLWVTKALVNQ 283 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~---~~~Lk~~i~~all~~ 283 (293)
.+...|-|+|+.++|+|++|..+|..+ ||+|+.|.|.+.. |.++-+|.+.-..+ .... ...|+..|..+|.+.
T Consensus 676 ~~~~~v~i~~~d~~gLFa~i~g~l~~~-~l~I~~A~i~t~~~g~~ld~f~V~~~~~-~~~~~~~~~~i~~~l~~~l~~~ 752 (856)
T PRK03059 676 GEGLQVMVYTPDQPDLFARICGYFDRA-GFSILDARVHTTRHGYALDTFQVLDPEE-DVHYRDIINLVEHELAERLAEQ 752 (856)
T ss_pred CCeEEEEEEecCCCcHHHHHHHHHHHC-CCceeeeEEEEcCCCeEEEEEEEeCCCC-CCChHHHHHHHHHHHHHHHcCC
Confidence 356899999999999999999999999 8999999996554 56666776643222 2111 346777777777653
No 67
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.34 E-value=1.3 Score=32.51 Aligned_cols=47 Identities=6% Similarity=0.120 Sum_probs=36.3
Q ss_pred EEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeec
Q 042663 215 RLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRG 262 (293)
Q Consensus 215 ~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~ 262 (293)
-+..+.++|.|.+|++.+... |+++.+.......+ ...+.|.+.+.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~-~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAER-GINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHC-CCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 344567899999999999999 89999997665554 445677777764
No 68
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.12 E-value=1.2 Score=42.07 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=53.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.|.|++++|+...|.+.|-++ |++|...+..+. ++.|... +++.. ....+...|+..+...--.-|.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~-~vNI~dls~~~~~~~~~F~m~--~~~~~-p~~~~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEH-GCYITELHSFDDRLSGRFFMR--VEFHS-EEGLDEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhC-CCCEEEeeeeecCCCCeEEEE--EEEec-CCCCCHHHHHHHHHHHHHHhCcE
Confidence 4779999999999999999999999 899999887532 2455444 44432 23467889998888766555543
No 69
>PRK08577 hypothetical protein; Provisional
Probab=91.85 E-value=1.4 Score=36.64 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=41.8
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEeec
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVRG 262 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~~ 262 (293)
+.++|.|.+..++|+|.+|+++|.++ +.++.+.+..+.. +.+...+++.+..
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~-~inI~~i~~~~~~~~~~~~i~l~vev~~ 108 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEH-GVDILATECEELKRGELAECVIIVDLSK 108 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHC-CCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 46899999999999999999999999 8999988766554 4455667777643
No 70
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=91.78 E-value=2.6 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=36.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEe
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSV 260 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv 260 (293)
|+|.+..++|.+..|++.|... ++++....+...+ +.....|++++
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEE-KINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhC-CCCEEEEEeEECCCCEEEEEEEEEE
Confidence 4678899999999999999999 8999998876655 44445566655
No 71
>PRK07334 threonine dehydratase; Provisional
Probab=91.23 E-value=1.5 Score=43.03 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee-----CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV-----SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~-----~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
.+.|.|.+..++|+|.+|+.+|.+. +.+|.+.+..+. ++.....|+++|+. ..+| ..|...|.+.||
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~-~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d------~~~L-~~vi~~Lr~~g~ 397 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEA-GANIIEVSHQRLFTDLPAKGAELELVIETRD------AAHL-QEVIAALRAAGF 397 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhC-CCceEEEEEEecccCCCCCeEEEEEEEEeCC------HHHH-HHHHHHHHHcCC
Confidence 3899999999999999999999999 799999997654 45666778888842 2233 355666667776
Q ss_pred C
Q 042663 286 E 286 (293)
Q Consensus 286 ~ 286 (293)
.
T Consensus 398 ~ 398 (403)
T PRK07334 398 E 398 (403)
T ss_pred e
Confidence 4
No 72
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.12 E-value=0.6 Score=36.75 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=60.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
+.|.|.-.+|+|+.+.|..+|-++ |.++...+=+-..+.| |+.+-|..+....+...+|..+..+....|.+.
T Consensus 4 avITV~GkDr~GIva~is~vLAe~-~vNIldisQtvm~~~f--tm~~lV~~~~~~~d~~~lr~~l~~~~~~lgv~V 76 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEH-GVNILDISQTVMDGFF--TMIMLVDISKEVVDFAALRDELAAEGKKLGVDV 76 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHc-CCcEEEHHHHHHhhhc--eeeeEEcCChHhccHHHHHHHHHHHHHhcCcEE
Confidence 678888889999999999999999 8999998877666665 444556556677888999999999998888765
No 73
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.33 E-value=1.7 Score=30.61 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=31.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS 249 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~ 249 (293)
.|.|.+..++|.+.+++..|.+. +..|.+.+.....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEH-GGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhC-CCCEEEEEEeccC
Confidence 46788999999999999999999 8999988776543
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.26 E-value=2.1 Score=31.15 Aligned_cols=65 Identities=9% Similarity=0.031 Sum_probs=42.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--C-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--S-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
+.|.-+.+||.|.+++..|.+. |.+|++...... + +.-...+++.+...+ -...|..+|.+. +++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~-g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~-------~~~~i~~~L~~~-~~~ 69 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREF-NARIISILTAFEDAPDGMRRVFIRVTPMDRS-------KENELIEELKAK-FTV 69 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHC-CCeEEEEEeccccCCCCccEEEEEEEEecch-------HHHHHHHHHhCc-ccE
Confidence 4667789999999999999999 899998876654 2 222344444442211 134556666443 554
No 75
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=89.81 E-value=2.2 Score=29.79 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=37.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEe
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSV 260 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv 260 (293)
.+.|.+..++|+|.+|+..|.+. +.++.+.+..+. ++...+.|++.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARR-GFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhC-CCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46788889999999999999999 899999887654 345556666655
No 76
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.77 E-value=4.1 Score=30.31 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=37.5
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecC
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGS 263 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~ 263 (293)
+.+..+.++|.|.+|++.|... |+++.+.......+ ...++|.+++.+.
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~-~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAER-GINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHC-CcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 4455577899999999999999 89999887665543 4557777777643
No 77
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.70 E-value=0.27 Score=50.00 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhcHHHHHHHHHH
Q 042663 109 ISERRRRGKMKEKLYALRALVPN----ITKMDKASIVGDAVLYVQ 149 (293)
Q Consensus 109 ~~ER~RR~~in~~~~~LrslvP~----~~K~dKasIL~~Ai~yI~ 149 (293)
---++-|+|+|.-+..|.+|+|- .+|.||.|||.=++.|++
T Consensus 31 NPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 31 NPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred CcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34577899999999999999996 589999999999999986
No 78
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.44 E-value=3 Score=29.14 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=29.3
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeee
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT 247 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst 247 (293)
+.|.+..++|.+.+++..|.+. |.+|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~-~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADH-EINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHc-CcCeeeeEEEe
Confidence 5778899999999999999999 89999887655
No 79
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.40 E-value=3.2 Score=30.06 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=45.4
Q ss_pred EEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcC
Q 042663 215 RLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL 288 (293)
Q Consensus 215 ~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~ 288 (293)
.|.-+.+||-|.+++++|.. |.+|+..+....+ +.....+.+++.+. .-...+..+|...|+.+.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~--~~nI~~~~~~~~~~~~~~v~v~ie~~~~-------~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP--PRNITEFHYRNQGGDEARVLVGIQVPDR-------EDLAELKERLEALGYPYV 67 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC--CCcEEEEEEEcCCCCceEEEEEEEeCCH-------HHHHHHHHHHHHcCCCcc
Confidence 56678999999999999987 4888877765443 23344555666432 335677778888998764
No 80
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=89.23 E-value=1.7 Score=30.23 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=35.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEE
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTS 258 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~ 258 (293)
+.|.+..++|.+.+|++.|.+. |++|.+..+.... +....+|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEH-GINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhc-CCCeeeEEEeccCCCCEEEEEEEc
Confidence 5678899999999999999999 8999998877654 444555544
No 81
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=89.12 E-value=1.6 Score=30.07 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=34.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEE
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTS 258 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~ 258 (293)
|.|..+.++|.|.+++++|-+. |.+|.+..+.... +..+..|.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~-~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEA-GINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHc-CCCEeeEEEEEccCCcEEEEEEE
Confidence 3567889999999999999999 8999888766555 444445444
No 82
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=88.73 E-value=0.25 Score=45.97 Aligned_cols=53 Identities=28% Similarity=0.393 Sum_probs=45.9
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHHH
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQM 153 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq~ 153 (293)
..+|.+-|..||.|=-.+|+-|..||.++|. ..|+.|.-.|.-|-.||..|+.
T Consensus 70 ~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 70 TLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 3456667889999999999999999999994 5789999999999999998853
No 83
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=88.33 E-value=1.3 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.+.++.|||+...|-++|-+. |.++..++.+..++.|-..+.+.. .. .....|+..+...-...|+.
T Consensus 8 ~lviTviG~DrpGIVa~vs~~l~~~-g~NI~ds~~t~lgg~Fa~i~lvs~--~~--~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 8 YLVITALGADRPGIVNTITRHVSSC-GCNIEDSRLAMLGEEFTFIMLLSG--SW--NAITLIESTLPLKGAELDLL 78 (190)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHHc-CCCeeehhhHhhCCceEEEEEEeC--Ch--hHHHHHHHHHHhhhhhcCeE
Confidence 4789999999999999999999999 999999999999997755555422 22 24556666655544344443
No 84
>PRK06382 threonine dehydratase; Provisional
Probab=86.54 E-value=4.7 Score=39.64 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee----eeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT----TVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs----t~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.++.+.+.|.-+.+||.|.+|++.|.+. +.+|++.... ... +....+|+++..+. .....|..+|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~-~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~-------~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASN-GGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ-------DHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcC-CCcEEEEEEeeccccCCCCcEEEEEEEEeCCH-------HHHHHHHHHHHH
Confidence 3567899999999999999999999999 8999887754 222 34456666666411 234578888888
Q ss_pred cCCCcC
Q 042663 283 QGFEVL 288 (293)
Q Consensus 283 ~g~~~~ 288 (293)
.||.+.
T Consensus 399 ~Gy~~~ 404 (406)
T PRK06382 399 MGYKFN 404 (406)
T ss_pred CCCCee
Confidence 999875
No 85
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.38 E-value=0.55 Score=49.02 Aligned_cols=46 Identities=33% Similarity=0.544 Sum_probs=39.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCC----CCCCChhcHHHHHHHHHH
Q 042663 104 RSRALISERRRRGKMKEKLYALRALVPN----ITKMDKASIVGDAVLYVQ 149 (293)
Q Consensus 104 r~~h~~~ER~RR~~in~~~~~LrslvP~----~~K~dKasIL~~Ai~yI~ 149 (293)
|.+-.-+-|-||.|=|+-|.+|..+||- .+..|||+|+.=||.|++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3444557899999999999999999994 367899999999999997
No 86
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=85.96 E-value=1 Score=41.74 Aligned_cols=51 Identities=29% Similarity=0.313 Sum_probs=44.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQ 152 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq 152 (293)
.+|..-+..||+|=..+|..|..||..||. ..|.+|-..|+.|-.||--|-
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~ 226 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALG 226 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhH
Confidence 456667889999999999999999999996 467889999999999998773
No 87
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=85.89 E-value=7.1 Score=28.90 Aligned_cols=46 Identities=7% Similarity=0.056 Sum_probs=36.9
Q ss_pred EEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeec
Q 042663 216 LVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRG 262 (293)
Q Consensus 216 I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~ 262 (293)
+..+.++|.|.++|+.+... |+++.+..+-...+ ..-+.|-+++.+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~-~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 5 FSLKEEVGALARALKLFEEF-GVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHC-CCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 44467899999999999999 89999998776664 346777777765
No 88
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=85.33 E-value=1.2 Score=31.72 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=33.9
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEe
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSV 260 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv 260 (293)
|-+.+..++|++.+++..|... |.++...+....++.....|++.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~-~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEH-NINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHc-CCCHHHHhccCCCCEEEEEEEcCC
Confidence 3457788999999999999999 899877665444455555555544
No 89
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=85.22 E-value=0.91 Score=44.87 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhccCCC----CCCCChhcHHHHHHHHHHH
Q 042663 110 SERRRRGKMKEKLYALRALVPN----ITKMDKASIVGDAVLYVQD 150 (293)
Q Consensus 110 ~ER~RR~~in~~~~~LrslvP~----~~K~dKasIL~~Ai~yI~~ 150 (293)
.-|.||++-|--|.+|..++|- .+..||++|+.=|..|||.
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 5799999999999999999995 3568999999999999984
No 90
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.93 E-value=10 Score=28.72 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=46.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcCCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLTP 290 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~~~ 290 (293)
.++.|.-+.+||-|.+++++|- +.+|......... +.....+.+++.++ .+-...+..+|...|+.++-.
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~---~anI~~~~y~~~~~~~~~v~i~ie~~~~------~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG---PRNITEFNYRYADEKDAHIFVGVSVANG------AEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC---CCceeEEEEEccCCCeeEEEEEEEeCCc------HHHHHHHHHHHHHCCCCeEEC
Confidence 4678888999999999999888 2556655544332 33345566666431 122446677889999987643
No 91
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=83.64 E-value=7.3 Score=29.60 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=39.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCccc
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNM 267 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i 267 (293)
..|.|.-..+||+|.+|+..+.-- |++|.+.++....+.=+..+++-+. ++..+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rR-GfnI~sl~v~~t~~~~~sriti~v~-~~~~i 57 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHR-GFQVCSMNMTQNTDAQNINIELTVA-SERPI 57 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcC-CeeeeeEEeeecCCCCEEEEEEEEC-CCchH
Confidence 357788889999999999999999 9999999987754322334444453 44443
No 92
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=83.04 E-value=7.4 Score=44.75 Aligned_cols=71 Identities=8% Similarity=0.171 Sum_probs=56.5
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEE---eeeeC--CeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSN---LTTVS--EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~---vst~~--~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
..+.++|....++..|++|+-+|++| ||.|+.-. +.+.+ ..+++.|.+... .+..+++..++..+..||.+
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenl-Gl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENL-GLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhC-CCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHH
Confidence 45899999999999999999999999 99999765 33322 257888888875 33447888899888888864
No 93
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=82.96 E-value=10 Score=36.67 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee-----CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV-----SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~-----~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.++.+.+.|.-+.+||.|.++++.+.+. |.+|++...... .+....++++++.+ ..-...|..+|..
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~-~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~-------~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEA-RANIVKIDHDRLSKEIPPGFAMVEITLETRG-------KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCceEEEEEEEEeCC-------HHHHHHHHHHHHH
Confidence 3566799999999999999999999999 899998865421 24455566666532 1234578888888
Q ss_pred cCCCc
Q 042663 283 QGFEV 287 (293)
Q Consensus 283 ~g~~~ 287 (293)
.||.+
T Consensus 374 ~G~~v 378 (380)
T TIGR01127 374 MGYNF 378 (380)
T ss_pred cCCcc
Confidence 88875
No 94
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.65 E-value=13 Score=29.03 Aligned_cols=51 Identities=8% Similarity=0.058 Sum_probs=38.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGS 263 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~ 263 (293)
.-|-+..+.++|.|.++|..|... |+++.+...-...+ ..-+.|-+++.+.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~-~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEK-DINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 344455577899999999999999 89999988766553 3456777777653
No 95
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=82.17 E-value=0.84 Score=47.75 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=51.0
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPNI-----TKMDKASIVGDAVLYVQDLQMKAKKLKTEIA 163 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~-----~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~ 163 (293)
+.++..|.-+|.+||.+++-.|..|.+++-+. .|+.++.-++..+.||..++++...+.++-.
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~ 716 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH 716 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh
Confidence 36788899999999999999999999998763 4677778899999999888775555444433
No 96
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=81.81 E-value=7.3 Score=29.66 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=38.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcc
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQN 266 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~ 266 (293)
..|.+.-..+||+|.+|..++.-- |++|.+.++....+.=+.-+++.+.+++..
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rR-gfNI~Sl~vg~te~~~~sriti~~~~~~~~ 56 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARR-GYYISSLNLNERDTSGVSEMKLTAVCTENE 56 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhcc-CcceEEEEecccCCCCeeEEEEEEECCHHH
Confidence 357888899999999999999999 999999888755532233334444344443
No 97
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=80.68 E-value=12 Score=33.18 Aligned_cols=70 Identities=9% Similarity=0.083 Sum_probs=51.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC----C--eEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS----E--KFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~----~--~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
+.|.|.-.++||++..|-++|-+. |++|.+.+..+.+ + .|...+++.+- .+.++..|+..+...--.-+.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~-~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP---~~~~~~~L~~~l~~l~~eL~v 171 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSH-HMNIAELVSRTQPAEGERPAQLHIQITAHSP---ASQDAANIEQAFKALCTELNA 171 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHc-CCChhheEEeeecCCCCCcccEEEEEEEEcC---CCCCHHHHHHHHHHHHHHhCc
Confidence 678889999999999999999999 8999988766554 2 45555555553 345677888877765544433
No 98
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=80.58 E-value=8.4 Score=36.29 Aligned_cols=66 Identities=12% Similarity=0.233 Sum_probs=49.5
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
..+.+.|.|+.++|+.+.|-..|-+. |..|+.++-.+. +++|+.-..+...+ ...+.+.|+..+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~-g~NI~~~~qf~D~~~g~FFmR~~f~~~~--~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEH-GCNIVDSDQFDDPETGRFFMRVEFEGEG--GPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHc-CCceeecccccccccCeEEEEEEEecCC--CcccHHHHHHHHHH
Confidence 34788999999999999999999999 999998875432 36777666555532 22666677766665
No 99
>PRK08526 threonine dehydratase; Provisional
Probab=80.18 E-value=12 Score=36.83 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=55.7
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-----eEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-----KFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-----~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.++.+.+.|.-+.+||-|.+++..+-+. +.+|+...-.+... ....++.+++++. +-...|..+|..
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~-~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~-------~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEA-NANIVKIDYDRFSTKLDYGDAMISITLETKGK-------EHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccC-CCcEEEEEEEeccCCCCCccEEEEEEEEeCCH-------HHHHHHHHHHHH
Confidence 4678999999999999999999999999 79999887755432 3455666666432 335577888888
Q ss_pred cCCCcC
Q 042663 283 QGFEVL 288 (293)
Q Consensus 283 ~g~~~~ 288 (293)
.||.+.
T Consensus 395 ~g~~~~ 400 (403)
T PRK08526 395 KGFNFY 400 (403)
T ss_pred CCCCeE
Confidence 888764
No 100
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=80.08 E-value=5.4 Score=28.88 Aligned_cols=47 Identities=17% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCccc
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNM 267 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i 267 (293)
.++|.|.+|+..+.-- |++|.+.++....+.-...+++.+.+.+..+
T Consensus 1 n~~GvL~Ri~~vf~rR-g~nI~sl~v~~~~~~~~~riti~v~~~~~~i 47 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRR-GFNIESLSVGPTEDPGISRITIVVSGDDREI 47 (63)
T ss_dssp SSTTHHHHHHHHHHTT-T-EECEEEEEE-SSTTEEEEEEEEES-CCHH
T ss_pred CCcHHHHHHHHHHhcC-CeEEeeEEeeecCCCCEEEEEEEEeeCchhH
Confidence 3689999999999999 9999999988844322345555565544443
No 101
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=79.89 E-value=12 Score=39.97 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=42.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEee
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVR 261 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~ 261 (293)
+.|.|.+..++|+|.+|..+|.+. +++|.++++.+.. +.+...|+++|.
T Consensus 667 v~I~I~~~Dr~GlL~dIt~~is~~-~~nI~~v~~~~~~~~~~~~~~~~ieV~ 717 (743)
T PRK10872 667 LVVRVTANDRSGLLRDITTILANE-KVNVLGVASRSDTKQQLATIDMTIEIY 717 (743)
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCCEEEEEEEEEEC
Confidence 578899999999999999999999 7999999987653 566778888884
No 102
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=79.75 E-value=6.8 Score=41.41 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=42.8
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEee
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVR 261 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~ 261 (293)
+.|.|.+..++|+|.+|+.+|-+. +.+|.++++.+.. +.+...|+++|.
T Consensus 611 v~I~I~~~dr~GlLadI~~~ia~~-~~nI~~v~~~~~~~~~~~~~~~ieV~ 660 (683)
T TIGR00691 611 VDINIEAVDRKGVLSDLTTAISEN-DSNIVSISTKTYGKREAILNITVEIK 660 (683)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHC-CCCeEEEEeEEcCCCEEEEEEEEEEC
Confidence 578899999999999999999999 8999999987764 566778888885
No 103
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.15 E-value=16 Score=27.40 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=35.6
Q ss_pred ecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecC
Q 042663 218 CSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGS 263 (293)
Q Consensus 218 c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~ 263 (293)
.+.++|.|.++|..++.. |+.+.+...-...+ ..-+.|-+++.+.
T Consensus 7 l~~~~g~L~~iL~~f~~~-~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 7 LKNEVGGLAKALKLFQEL-GINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred cCCCCcHHHHHHHHHHHC-CCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 367899999999999999 89999988766543 3467777777644
No 104
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=79.06 E-value=11 Score=40.05 Aligned_cols=70 Identities=6% Similarity=0.110 Sum_probs=56.5
Q ss_pred ceEEEEEEe-cCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 210 RGFYVRLVC-SKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 210 ~~v~I~I~c-~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.+..+.|.. +.++|+++++..+|--. |+.|.+|++.+ +|..+..|.+.. ..+..-+...+.+.+..++-.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAK-GWNILSARMVA-NGPWSAEFDVRA-NGPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhc-CceeeEeEEec-CCceEEEEEEec-CCCCCCChHHHHHHHHHhhcC
Confidence 345666666 99999999999999999 89999999998 788788888876 456667778888888877643
No 105
>PRK08198 threonine dehydratase; Provisional
Probab=78.97 E-value=15 Score=35.84 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee-----CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV-----SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~-----~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.++.+.+.|.-+.+||.|.++++.|-+. |.+|...+.... .+....++++++.+ .. -.+.+..+|..
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~-g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~------~~-~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAEL-GANVIDVDHDRFSPDLRLGEVEVELTLETRG------PE-HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhC-CCceEEEEEEEccCCCCCceEEEEEEEEeCC------HH-HHHHHHHHHHH
Confidence 3567899999999999999999999999 899998876542 24455556655521 12 23467777878
Q ss_pred cCCCcC
Q 042663 283 QGFEVL 288 (293)
Q Consensus 283 ~g~~~~ 288 (293)
.|+.+.
T Consensus 396 ~G~~v~ 401 (404)
T PRK08198 396 AGYEVK 401 (404)
T ss_pred CCCeEE
Confidence 887653
No 106
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=78.45 E-value=8 Score=41.09 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=42.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEee
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVR 261 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~ 261 (293)
+.|.|.+..++|+|.+|+.+|-+. +++|.++++.+.. +.+...|+++|.
T Consensus 627 v~i~I~~~dr~GlL~dI~~~i~~~-~~nI~~v~~~~~~~~~~~~~~~ieV~ 676 (702)
T PRK11092 627 AEIKVEMFNHQGALANLTAAINTT-GSNIQSLNTEEKDGRVYSAFIRLTAR 676 (702)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHC-CCCeEEEEEEEcCCCEEEEEEEEEEC
Confidence 578999999999999999999999 8999999987665 456778888885
No 107
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=78.13 E-value=8.9 Score=33.29 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=39.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcc
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQN 266 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~ 266 (293)
..|.|.-..++|.|.+|...|... |++|.+..+....+.-..-+++.+.+++..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rr-g~NI~Sl~v~~te~~~~sriti~V~~~~~~ 56 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRR-GYNIESLTVGPTEDPGLSRMTIVTSGDEQV 56 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhC-CCcEEEEEeeecCCCCEEEEEEEEECCHHH
Confidence 357788899999999999999999 999999988766521123344445444333
No 108
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=77.31 E-value=6.5 Score=27.97 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=33.4
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEE
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSS 259 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~k 259 (293)
+-|..+.++|.+.++.+.|.+. |++|.+..+... ++...+.|.++
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~-~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEA-GINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-CcChhheEeeccCCCCEEEEEEEeC
Confidence 3467889999999999999999 899987765443 34555555443
No 109
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=76.66 E-value=14 Score=32.45 Aligned_cols=65 Identities=15% Similarity=0.232 Sum_probs=44.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHH
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKA 279 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~a 279 (293)
..|.|.-..+||+|.+|...|-.. |++|.+.++......=...+++.+.+++.. +++|+..+...
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrR-g~NIesLsv~~t~~~~~sr~TIvv~~~~~~--ieqL~kQL~KL 67 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARR-GFNIESLAVGPAEQKGISRITMVVPGDDRT--IEQLTKQLYKL 67 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhC-CCCeeEEEeeEcCCCCccEEEEEEECCHHH--HHHHHHHHHHH
Confidence 357888899999999999999999 999999998653322223444555443222 45555555443
No 110
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=76.02 E-value=11 Score=32.47 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=37.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGS 263 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~ 263 (293)
.|.|.-..++|.|.+|...|... |+++.+..+...++.-...+++.+.++
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rr-g~NI~Sl~v~~t~~~~~sriti~V~~d 52 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRR-GFNIESLTVGPTEDPDLSRMTIVVVGD 52 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhC-CceEEEEEEeecCCCCEEEEEEEEECC
Confidence 57788899999999999999999 999999988776521123344445433
No 111
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=17 Score=39.12 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=52.2
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccCh---HHHHHHHHHHHhhc
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHL---TNMKLWVTKALVNQ 283 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~---~~Lk~~i~~all~~ 283 (293)
..++..|-|.|+.+|++++.+..++... |++|+.|.|-+..++ .+=||.+.- -++..+.. ..+...+..++.+-
T Consensus 681 ~~~~teV~V~a~d~p~Lfa~v~~~~~~~-g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~~dr~~~~~~~l~~~l~s~ 758 (867)
T COG2844 681 HSGGTEVFVYAPDRPRLFAVVCAALSRR-GLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVEEDRRAALRGELIEALLSG 758 (867)
T ss_pred cCCceEEEEEcCCCccHHHHHHHHHccC-CCceeeeEEEEccCCceeeeEEEec-CCCCccchhHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999 999999999777755 555654431 12333332 24445555665544
No 112
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=67.15 E-value=22 Score=27.72 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=37.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEee
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVR 261 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~ 261 (293)
.|.+.-..++|+|.+|..+|-.- |++|.+.++....+-=+.-+++.+.
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRR-g~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRL-QYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhcc-CcCeeeEEecccCCCCceEEEEEEe
Confidence 57888889999999999999998 9999999987766422344445453
No 113
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=65.56 E-value=51 Score=32.53 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=53.4
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeee-eC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT-VS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst-~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
.++.+.+.+.-+.+||-|.++++.+-+. +.+|....... .+ +.....+.+++++ .+-...|..+|.+.|+
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~-~~NI~~~~y~~~~~~~~~~v~v~iE~~~-------~~h~~~i~~~L~~~Gy 393 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGP-NDDITRFEYTKKSNRETGPALIGIELND-------KEDFAGLLERMAAADI 393 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEeeecCCCCeEEEEEEEEeCC-------HHHHHHHHHHHHHCCC
Confidence 3678999999999999999999977767 56888777553 22 2334556667653 1334677778888999
Q ss_pred CcCC
Q 042663 286 EVLT 289 (293)
Q Consensus 286 ~~~~ 289 (293)
.|.-
T Consensus 394 ~~~~ 397 (409)
T TIGR02079 394 HYED 397 (409)
T ss_pred CeEE
Confidence 8753
No 114
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=65.10 E-value=14 Score=27.83 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
+..||+-|.-||.++++|++++..|.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 67899999999999999999866655
No 115
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.23 E-value=16 Score=27.52 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
++.||+-|.-||-++++|++++..|....
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 67899999999999999999998765443
No 116
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=59.91 E-value=59 Score=27.70 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=42.0
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEe-eeeCCeEEEEEEEEee
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNL-TTVSEKFVLTFTSSVR 261 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~v-st~~~~~~~t~~~kv~ 261 (293)
++.+.+.+.-.+|.|.|+++|+++-.. +++|.+.+= ....|+.-.|+.+...
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~-~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIARE-EINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHh-CCcEEEEecccccCceeeEEEEEEch
Confidence 566888999999999999999999999 799988762 3445777777777764
No 117
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=58.00 E-value=7.9 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.196 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC--CCCChhcHHHHHHHHHHHH
Q 042663 110 SERRRRGKMKEKLYALRALVPNI--TKMDKASIVGDAVLYVQDL 151 (293)
Q Consensus 110 ~ER~RR~~in~~~~~LrslvP~~--~K~dKasIL~~Ai~yI~~L 151 (293)
.||.|-.++++.+.-|++|+|+. .++.+.--|.-+-+||.+|
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 59999999999999999999974 3333322255555666555
No 118
>PRK09224 threonine dehydratase; Reviewed
Probab=57.44 E-value=70 Score=32.57 Aligned_cols=74 Identities=11% Similarity=0.176 Sum_probs=50.7
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.++++++.|.-+.+||-|.++++.|-. .+|+..+....+ +.....+.+++.+.+.+ ...|..+|...|+.
T Consensus 325 ~~re~~l~v~iPerPGaL~~f~~~l~~---~nItef~yr~~~~~~a~V~vgie~~~~~~~------~~~i~~~L~~~gy~ 395 (504)
T PRK09224 325 EQREALLAVTIPEEPGSFLKFCELLGG---RNVTEFNYRYADAKEAHIFVGVQLSRGQEE------RAEIIAQLRAHGYP 395 (504)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhcc---CcEEEEEEEecCCCeEEEEEEEEeCChhhH------HHHHHHHHHHcCCC
Confidence 357899999999999999999998872 556666554433 23344555666533222 45677788888988
Q ss_pred cCCC
Q 042663 287 VLTP 290 (293)
Q Consensus 287 ~~~~ 290 (293)
+..-
T Consensus 396 ~~~l 399 (504)
T PRK09224 396 VVDL 399 (504)
T ss_pred eEEC
Confidence 7543
No 119
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.21 E-value=64 Score=26.25 Aligned_cols=49 Identities=8% Similarity=0.028 Sum_probs=37.2
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecC
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGS 263 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~ 263 (293)
+-+..++++|.|.++|..+... |+++.+..+-...+ ..-+.|-+.+.+.
T Consensus 44 lifsl~~~pGsL~~iL~~Fa~~-gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 44 LLFSLKEGFSSLSRILKVFETF-EAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEeCCCCcHHHHHHHHHHHC-CCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 3344477899999999999999 89999998776643 3456777777644
No 120
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=56.76 E-value=80 Score=27.53 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=45.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee---CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV---SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~---~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
+.+-|.-..+||.|+++|+-|-+. |.+|++..=..- ++++-..+++++. . ...-.++..++..+|.-
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~-g~NiItIiH~r~kk~g~r~pV~i~~~~d--~-----~~~~~~i~~~~e~~Gi~ 75 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKT-GANIITIIHSRDKKYGPRVPVQIVFEGD--R-----EDKDAKIIRLLEEEGII 75 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhc-CccEEEEEeecCcccCCceeEEEEEEec--c-----cHHHHHHHHHHHhCCcE
Confidence 456677889999999999999999 999998765544 5565555555442 1 23345566666666643
No 121
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.50 E-value=23 Score=27.21 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
++.||+-|.-||-++++|++++..|...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998887654
No 122
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=54.76 E-value=59 Score=25.23 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=40.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHH
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTN 271 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~ 271 (293)
+.+.|....+|+.|.+||.+.+.- ||.|...+.+..-+.=...+.+-|. +...+++..
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhR-GF~vcamnmt~~~da~~~nie~tV~-s~R~~~lL~ 61 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHR-GFRVCAMNMTAAVDAGNANIELTVD-SDRSVDLLT 61 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhc-CeEEEEeecccccccccceEEEEEc-CCCChHHHH
Confidence 456777788999999999999998 9999999988773322233444453 445555433
No 123
>PRK11899 prephenate dehydratase; Provisional
Probab=52.72 E-value=1.2e+02 Score=28.54 Aligned_cols=62 Identities=8% Similarity=0.022 Sum_probs=45.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecCCcccChHHHHHHHHHH
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMHLTNMKLWVTKA 279 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~~~~Lk~~i~~a 279 (293)
|-+..+.+||.|.++|.++... |+++....+-...+ ..-|.|-+.+.++ ++-+.++.++...
T Consensus 197 l~~~~~~~pGaL~~vL~~Fa~~-gINLtkIeSRP~~~~~~~Y~F~id~eg~---~~d~~v~~aL~~l 259 (279)
T PRK11899 197 FVFRVRNIPAALYKALGGFATN-GVNMTKLESYMVGGSFTATQFYADIEGH---PEDRNVALALEEL 259 (279)
T ss_pred EEEEeCCCCChHHHHHHHHHHc-CCCeeeEEeeecCCCCceEEEEEEEECC---CCCHHHHHHHHHH
Confidence 3344468999999999999999 89999998877754 3567888888764 2234555555543
No 124
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=52.26 E-value=5.6 Score=41.92 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHhccCCC-----CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 97 TKKPKVDRSRALISERRRRGKMKEKLYALRALVPN-----ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIAD 164 (293)
Q Consensus 97 ~~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~-----~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~ 164 (293)
.....-.+..|...+|+||-.+.++|..|-.|.|- -.+.++++||. +.++.+++.-+.+.+....
T Consensus 781 ep~n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 781 EPFNGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred ccccceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 34445567889999999999999999999999984 35678999998 8888888887777765543
No 125
>PRK08639 threonine dehydratase; Validated
Probab=52.24 E-value=87 Score=30.95 Aligned_cols=73 Identities=8% Similarity=-0.009 Sum_probs=50.0
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
.++.+.+++.-+.+||-|.++++.+-+. +.+|+........ +.-...+.+++.+. +-.+.|..+|...||
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~-~~NI~~~~~~~~~~~~~~~v~v~iE~~~~-------~h~~~i~~~L~~~Gy 404 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGP-NDDITRFEYLKKNNRETGPVLVGIELKDA-------EDYDGLIERMEAFGP 404 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcC-CCcEEEEEEeecCCCCceEEEEEEEeCCH-------HHHHHHHHHHHHCCC
Confidence 4678999999999999999999966665 4588876654322 12234455666421 224567778888999
Q ss_pred CcC
Q 042663 286 EVL 288 (293)
Q Consensus 286 ~~~ 288 (293)
.|.
T Consensus 405 ~~~ 407 (420)
T PRK08639 405 SYI 407 (420)
T ss_pred ceE
Confidence 874
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=50.88 E-value=25 Score=25.24 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 145 VLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 145 i~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
-.||..|+.+++.|+.++..|...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888776554
No 127
>PRK12483 threonine dehydratase; Reviewed
Probab=49.84 E-value=1.5e+02 Score=30.55 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=52.0
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.++.+++.|.-+.+||-|.+++..|-.. +|+..+....+ +.....+.+++++. ..++..|..+|...|+.
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~---ni~~~~~~~~~~~~~~v~v~ie~~~~------~~~~~~i~~~l~~~g~~ 412 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR---QITEFNYRYADAREAHLFVGVQTHPR------HDPRAQLLASLRAQGFP 412 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc---CeEEEEEEecCCCeeEEEEEEEeCCh------hhhHHHHHHHHHHCCCC
Confidence 3678999999999999999999988866 45555544333 23445555666422 35567888899899998
Q ss_pred cCC
Q 042663 287 VLT 289 (293)
Q Consensus 287 ~~~ 289 (293)
+..
T Consensus 413 ~~d 415 (521)
T PRK12483 413 VLD 415 (521)
T ss_pred eEE
Confidence 753
No 128
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=49.55 E-value=28 Score=37.01 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=49.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
+.+++|....|+|+|..|+.+|. +|..+.++|.|.+++-.|.+. .+.+...+...|..+|.+
T Consensus 631 ~~~~e~r~~dr~g~l~~~~~~l~-----~~~~~~~~~~g~~~~~~~~~~-----~~~~r~~~~~~~~~~~~~ 692 (693)
T PRK00227 631 GNILEVRTEDRRGALGALLGVLP-----DLLWITASTPGATMIVQAALK-----PGFDRATVERDVTRVLAG 692 (693)
T ss_pred CcEEEEEeCccccHHHHHHHHhh-----hhhhHhhcCCCcceEEEEEec-----CcccHHHHHHHHHHHHhc
Confidence 46899999999999999999999 467888999998887777665 334566777777777653
No 129
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=48.61 E-value=57 Score=34.79 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=40.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEee
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVR 261 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~ 261 (293)
.+.|.|...+++|+|.+|+++|-.. +.+|.+++..+.. +.+...|+++|.
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~-~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANE-KINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhC-CCceEEeeccccCCceEEEEEEEEEC
Confidence 3677888899999999999999999 7999999987754 445566777774
No 130
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=47.72 E-value=25 Score=26.78 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=47.3
Q ss_pred EEEecC-CCChHHHHHHHHHhcCCceEEEEEeeeeCCeE---------EEEEEEEeecCCcccChHHHHHHHHHHHhhcC
Q 042663 215 RLVCSK-GEGVAVSLYQALESLTSFSIQNSNLTTVSEKF---------VLTFTSSVRGSDQNMHLTNMKLWVTKALVNQG 284 (293)
Q Consensus 215 ~I~c~~-r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~---------~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g 284 (293)
.|.-.+ ..|.+..|-++|-++ |++|...+- ..+++ .+.+.+.+.+.. .+...|+.++...-...|
T Consensus 3 tvlg~~~~a~~ia~Vs~~lA~~-~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~la~elg 77 (84)
T cd04871 3 TLLGRPLTAEQLAAVTRVVADQ-GLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLELASELN 77 (84)
T ss_pred EEEcCcCCHHHHHHHHHHHHHc-CCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHHhcccC
Confidence 344445 679999999999999 898876552 23332 445566665333 688999999987777667
Q ss_pred CCc
Q 042663 285 FEV 287 (293)
Q Consensus 285 ~~~ 287 (293)
.|.
T Consensus 78 vDI 80 (84)
T cd04871 78 VDI 80 (84)
T ss_pred ceE
Confidence 653
No 131
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=47.36 E-value=91 Score=24.87 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=38.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEee
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVR 261 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~ 261 (293)
-..|.|.-..+||+|.+|...+-.- |++|.+.++......=+.-+++-+.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRR-gyNIeSLtvg~te~~~iSRmtivv~ 57 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARR-AFNVEGILCLPIQDGDKSRIWLLVN 57 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcC-CcCeeeEEEeecCCCCceEEEEEEc
Confidence 3678888999999999999999888 9999999887666432344444453
No 132
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=47.17 E-value=77 Score=20.51 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCChHHHHHHHHHhcCCceEEEEEee
Q 042663 221 GEGVAVSLYQALESLTSFSIQNSNLT 246 (293)
Q Consensus 221 r~gll~~Il~aLe~l~gL~V~sa~vs 246 (293)
.+|.+.+++++|.+. ++.|.....+
T Consensus 13 ~~~~~~~i~~~l~~~-~i~i~~i~~~ 37 (60)
T cd04868 13 TPGVAAKIFSALAEA-GINVDMISQS 37 (60)
T ss_pred CCCHHHHHHHHHHHC-CCcEEEEEcC
Confidence 579999999999999 7888766543
No 133
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=44.05 E-value=94 Score=20.60 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.8
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCCceEEEEEee
Q 042663 213 YVRLVCS---KGEGVAVSLYQALESLTSFSIQNSNLT 246 (293)
Q Consensus 213 ~I~I~c~---~r~gll~~Il~aLe~l~gL~V~sa~vs 246 (293)
.|+|.+. ..++++.+++++|.+. +..|.....+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~-~i~v~~i~~~ 37 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEA-GINIIMISQG 37 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHC-CCcEEEEEcC
Confidence 3555443 4588999999999999 7888877643
No 134
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=43.78 E-value=27 Score=22.26 Aligned_cols=18 Identities=50% Similarity=0.667 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 042663 110 SERRRRGKMKEKLYALRA 127 (293)
Q Consensus 110 ~ER~RR~~in~~~~~Lrs 127 (293)
-=|+||+.++.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 347899999999999985
No 135
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=43.65 E-value=1.2e+02 Score=22.77 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=35.4
Q ss_pred cCCCChH----HHHHHHHHhcCCce-EEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 219 SKGEGVA----VSLYQALESLTSFS-IQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 219 ~~r~gll----~~Il~aLe~l~gL~-V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
..++|++ ..+.++|..| |+. |.++.+.. .++ +.+.+...+.....++.+....|.|-
T Consensus 8 ~~k~gv~Dp~G~ai~~~l~~l-g~~~v~~Vr~~k-----~~~--l~~~~~~~~~a~~~v~~i~~~lL~Np 69 (80)
T PRK05974 8 TLKEGVLDPQGQAIKGALGSL-GYDGVEDVRQGK-----YFE--LELEGESEEKAEADLKEMCEKLLANP 69 (80)
T ss_pred EECCCCcChHHHHHHHHHHHc-CCCCcceEEEEE-----EEE--EEEcCCchhhhHHHHHHHHHHhcCCc
Confidence 3455544 5678889999 897 77766442 333 33444445566667777777776664
No 136
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=43.41 E-value=1.3e+02 Score=21.96 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCC
Q 042663 222 EGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSD 264 (293)
Q Consensus 222 ~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e 264 (293)
..+++.+.+.+.=- ++|+++++....+..+-.+.+.+.++.
T Consensus 16 ~piis~l~~~~~v~--~nIl~g~i~~i~~~~~G~l~l~l~g~~ 56 (76)
T PF09383_consen 16 EPIISQLIREFGVD--VNILHGNIEEIQGTPFGILILELPGDD 56 (76)
T ss_dssp SCHHHHHHHHHT-E--EEEEEEEEEEETTEEEEEEEEEEES-H
T ss_pred chHHHHHHHHhCCC--EEEEEEEeEEcCCeeEEEEEEEEECCH
Confidence 55777777766544 889999999999998899999987553
No 137
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=42.26 E-value=1.1e+02 Score=22.55 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=32.3
Q ss_pred cceeeE-EEEeCceEEEEEEecCC------CChHHHHHHHHHhcCCceEEEEEeee
Q 042663 199 IMQMGV-FQVEERGFYVRLVCSKG------EGVAVSLYQALESLTSFSIQNSNLTT 247 (293)
Q Consensus 199 ~~~veV-~~v~~~~v~I~I~c~~r------~gll~~Il~aLe~l~gL~V~sa~vst 247 (293)
...|.| ..+.++.+.|.|.+... ..-+..+.++|... |+.|.+.++..
T Consensus 24 LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~-G~~~~~~~v~~ 78 (85)
T PF02120_consen 24 LGSVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQ-GLEVVNLSVSQ 78 (85)
T ss_dssp G--EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTT-T-EEEEEEEES
T ss_pred cCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC-CCCeEEEEEEE
Confidence 344555 45667889999999765 34567788889999 99999888764
No 138
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.64 E-value=48 Score=23.73 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 042663 146 LYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
.||..|+.++..|+.++..|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444443
No 139
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=40.08 E-value=1.3e+02 Score=21.74 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=35.3
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
..+|++.+++++|.+. ++.|.-.+.+..+. -++|++.- ....-....|..++...+.++-++.
T Consensus 13 ~~~~~~~~i~~~L~~~-~I~v~~i~~~~~~~--~isf~v~~--~d~~~~~~~l~~~~~~~~~~~~~~~ 75 (80)
T cd04921 13 GVPGIAARIFSALARA-GINVILISQASSEH--SISFVVDE--SDADKALEALEEEFALEIKAGLIKP 75 (80)
T ss_pred CCccHHHHHHHHHHHC-CCcEEEEEecCCcc--eEEEEEeH--HHHHHHHHHHHHHHHhhhhhCcccc
Confidence 4589999999999999 78887655432222 23343332 1111112345555555555555443
No 140
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=39.17 E-value=2.4e+02 Score=28.70 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=49.7
Q ss_pred eCceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 208 EERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 208 ~~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.++++++.|.-+.+||-|.+++++|-.- +|+..+....+ +.....+.+++.+. .-...|..+|...|+.
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~~---nItef~yr~~~~~~a~v~vgie~~~~-------~~~~~l~~~L~~~Gy~ 391 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGNR---NITEFNYRYADRKDAHIFVGVQLSNP-------QERQEILARLNDGGYS 391 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc---ceEEEEEEecCCCeEEEEEEEEeCCH-------HHHHHHHHHHHHcCCC
Confidence 3678999999999999999999999863 46655554333 23334455565421 2245667788888988
Q ss_pred cCCC
Q 042663 287 VLTP 290 (293)
Q Consensus 287 ~~~~ 290 (293)
+..-
T Consensus 392 ~~dl 395 (499)
T TIGR01124 392 VVDL 395 (499)
T ss_pred eEEC
Confidence 7643
No 141
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=38.02 E-value=39 Score=29.01 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=22.0
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 042663 98 KKPKVDRSRALISERRRRGKMKEKLYALRAL 128 (293)
Q Consensus 98 ~~~~~~r~~h~~~ER~RR~~in~~~~~Lrsl 128 (293)
....+.|......||+||.--..-|.-||..
T Consensus 6 ~pt~kErEnnk~RERrRRAIaakIfaGLR~~ 36 (150)
T PF05687_consen 6 RPTWKERENNKRRERRRRAIAAKIFAGLRAH 36 (150)
T ss_pred cccHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777789999996666667777765
No 142
>PLN02550 threonine dehydratase
Probab=37.81 E-value=1.9e+02 Score=30.36 Aligned_cols=71 Identities=7% Similarity=0.104 Sum_probs=50.2
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCc
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEV 287 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~ 287 (293)
++.+++.|.-+.+||-|.+++..|-.. +|+..+....+ +.....+.+++.+. .-.+.|..+|...|+.+
T Consensus 415 ~r~~~~~v~ipd~pG~l~~~~~~l~~~---ni~~~~~~~~~~~~~~v~v~ie~~~~-------~~~~~i~~~l~~~g~~~ 484 (591)
T PLN02550 415 QQEAVLATFMPEEPGSFKRFCELVGPM---NITEFKYRYSSEKEALVLYSVGVHTE-------QELQALKKRMESAQLRT 484 (591)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHhhhh---cceEEEEEecCCCceEEEEEEEeCCH-------HHHHHHHHHHHHCCCCe
Confidence 456889999999999999999988865 46665554433 34455566666422 33567888888899987
Q ss_pred CC
Q 042663 288 LT 289 (293)
Q Consensus 288 ~~ 289 (293)
+-
T Consensus 485 ~~ 486 (591)
T PLN02550 485 VN 486 (591)
T ss_pred Ee
Confidence 53
No 143
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=37.41 E-value=2e+02 Score=24.15 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=32.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE 250 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~ 250 (293)
.|+|..+.++|-|..+..+|.+. |+++...++.-.++
T Consensus 5 QISvFlENk~GRL~~~~~~L~ea-gINiRA~tiAdt~d 41 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEA-GINIRAFTIADTGD 41 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHc-CCceEEEEeccccC
Confidence 47788899999999999999999 99999988876554
No 144
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=37.26 E-value=54 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 042663 148 VQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
|..|+++++.|+.++..|+....
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888887664
No 145
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=36.98 E-value=1.4e+02 Score=20.43 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=23.6
Q ss_pred EEEEec---CCCChHHHHHHHHHhcCCceEEEEEe
Q 042663 214 VRLVCS---KGEGVAVSLYQALESLTSFSIQNSNL 245 (293)
Q Consensus 214 I~I~c~---~r~gll~~Il~aLe~l~gL~V~sa~v 245 (293)
|.|.+. ..+|++.+++++|.+. |+.|.-.+.
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~-~I~v~~i~~ 37 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKA-NVNIRAIAQ 37 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHC-CCCEEEEEe
Confidence 444443 4589999999999999 899966553
No 146
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.39 E-value=89 Score=22.81 Aligned_cols=53 Identities=21% Similarity=0.331 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 110 SERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 110 ~ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
+|-+-+..|.+-+...++-- ..-.+=|.+|=...+.|+.+++.|+.+++++++
T Consensus 8 ~EirakQ~~~eEL~kvk~~n-----~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSAN-----LAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555554444310 122345899999999999999999999988764
No 147
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.36 E-value=1.1e+02 Score=28.51 Aligned_cols=63 Identities=29% Similarity=0.315 Sum_probs=39.2
Q ss_pred CCCCcccchhh-HHHHHHHHHHHHHHHHHhccCCCCCCCC-hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 98 KKPKVDRSRAL-ISERRRRGKMKEKLYALRALVPNITKMD-KASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 98 ~~~~~~r~~h~-~~ER~RR~~in~~~~~LrslvP~~~K~d-KasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
++.++.|-.|. +-|+.-|.|++.+..+=-+ .| |-.-..+-=.-|+.|..+.++|+.+++.|+.
T Consensus 54 ~~rKr~RL~HLS~EEK~~RrKLKNRVAAQta-------RDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 54 PKRKRRRLDHLSWEEKVQRRKLKNRVAAQTA-------RDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred hHHHHHhhcccCHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777885 6789999999998766432 22 2222233333466777777777777666553
No 148
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=35.33 E-value=1.2e+02 Score=20.85 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=31.7
Q ss_pred CChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 222 EGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 222 ~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
++...+|-++|..++| |.++.+....+.+..+ . ....+++..| ..+|.+.||+
T Consensus 10 ~~C~~~v~~~l~~~~G--V~~v~vd~~~~~v~v~----~--~~~~~~~~~i----~~~i~~~Gy~ 62 (62)
T PF00403_consen 10 EGCAKKVEKALSKLPG--VKSVKVDLETKTVTVT----Y--DPDKTSIEKI----IEAIEKAGYE 62 (62)
T ss_dssp HHHHHHHHHHHHTSTT--EEEEEEETTTTEEEEE----E--STTTSCHHHH----HHHHHHTTSE
T ss_pred HHHHHHHHHHHhcCCC--CcEEEEECCCCEEEEE----E--ecCCCCHHHH----HHHHHHhCcC
Confidence 4688999999999977 5666655444554332 2 2222555555 4455555653
No 149
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=34.80 E-value=78 Score=22.69 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=26.6
Q ss_pred ceEEEEEEec----CCCChHHHHHHHHHhcCCceEEEEE
Q 042663 210 RGFYVRLVCS----KGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 210 ~~v~I~I~c~----~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
+-..|+|..+ ..+|++.++..+|-+. |..|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~-~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEA-GINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHT-TS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHC-CCCEEEEE
Confidence 3456677776 3699999999999999 89998777
No 150
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=34.76 E-value=1.4e+02 Score=28.96 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHh---------ccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 114 RRGKMKEKLYALR---------ALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 114 RR~~in~~~~~Lr---------slvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
|...++..+.+|- ++.|...+.+=+.+|.++-+-.+.|+.+++.|++++.+++.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777776665 22232333445678999999999999999999999887764
No 151
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=34.53 E-value=1.8e+02 Score=21.11 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 118 MKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 118 in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
+.+....+..++ ..++..++.+|-.-+.....+++.|+.+++.++....
T Consensus 16 i~~Gae~m~~~~----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 16 IKEGAENMLQAY----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHHHH----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHH----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 444455554443 3556668999999999999999999999988876543
No 152
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.50 E-value=81 Score=23.45 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 139 SIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 139 sIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
.=|++|+.-+..|+.+++.|+++++...
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3488899999999999999999877654
No 153
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=33.30 E-value=1.2e+02 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.343 Sum_probs=17.9
Q ss_pred ChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 136 DKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 136 dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
-.+.||+++. |+.++.+|++|+.++...+
T Consensus 47 aQ~vlvQE~A--L~~a~~ri~eLe~ql~q~~ 75 (247)
T PF09849_consen 47 AQTVLVQEQA--LKQAQARIQELEAQLQQAQ 75 (247)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 3444444432 6777888888888876643
No 154
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.03 E-value=1.6e+02 Score=20.18 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.1
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEee
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLT 246 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vs 246 (293)
.++|++.+++++|.+. |++|.-...+
T Consensus 13 ~~~~~~~~if~~L~~~-~I~v~~i~q~ 38 (66)
T cd04919 13 NMIGIAGRMFTTLADH-RINIEMISQG 38 (66)
T ss_pred CCcCHHHHHHHHHHHC-CCCEEEEEec
Confidence 4589999999999999 8988655443
No 155
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=32.89 E-value=1.4e+02 Score=28.28 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 108 LISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 108 ~~~ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
...=|.||.+|.+.+..|..-=|...| |..|++++.+++.+....+
T Consensus 140 l~p~R~~r~~l~d~I~kLk~k~P~s~k-------------l~~LeqELvraEae~lvaE 185 (271)
T PF13805_consen 140 LQPSRDRRRKLQDEIAKLKYKDPQSPK-------------LVVLEQELVRAEAENLVAE 185 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTTTT-------------HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhHHHHHHHHHHHhcCCCChH-------------HHHHHHHHHHHHHHhhHHH
Confidence 345688999999999999887564333 3445666655555554444
No 156
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.89 E-value=2.1e+02 Score=21.49 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=24.0
Q ss_pred EEEEEec---CCCChHHHHHHHHHhcCCceEEEEE
Q 042663 213 YVRLVCS---KGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 213 ~I~I~c~---~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
+|.|... ..+|.+.+|+++|... |++|--..
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~-~InVDmI~ 36 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETL-GISVDVVA 36 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHc-CCcEEEEE
Confidence 4454443 4589999999999999 78887765
No 157
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=32.55 E-value=1.7e+02 Score=20.08 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEE
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
.++|++.+|+++|+.. |++|....
T Consensus 12 ~~~~~~~~if~~l~~~-~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKH-GISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHc-CCeEEEEe
Confidence 4589999999999999 79888775
No 158
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=32.39 E-value=1.2e+02 Score=20.99 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 140 IVGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 140 IL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
....+-.+|+.|-+++..+.++++.|+...
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356788999999999999999999988653
No 159
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.53 E-value=2.1e+02 Score=21.07 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.5
Q ss_pred cCCCChHHHHHHHHHhcCCceEEEEE
Q 042663 219 SKGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 219 ~~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
+..+|++.+|+++|... |++|-...
T Consensus 12 ~~~~g~~~~IF~~La~~-~I~VDmI~ 36 (75)
T cd04932 12 LHAQGFLAKVFGILAKH-NISVDLIT 36 (75)
T ss_pred CCCcCHHHHHHHHHHHc-CCcEEEEe
Confidence 45699999999999999 78887765
No 160
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=30.00 E-value=95 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042663 146 LYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
.|+..|+.++..|+.++..|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~ 46 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQ 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 161
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=29.41 E-value=74 Score=23.69 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=26.4
Q ss_pred eeeEEEEeCceEEEEEEecCCCChHHHHHHHHHhc
Q 042663 201 QMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESL 235 (293)
Q Consensus 201 ~veV~~v~~~~v~I~I~c~~r~gll~~Il~aLe~l 235 (293)
+-+|.+-.++++.+-|+|++++-+|.+|=.++++-
T Consensus 6 dW~Vsrt~dGdYrL~itcp~Ke~LlqSIEgmi~~~ 40 (71)
T PF11619_consen 6 DWEVSRTLDGDYRLVITCPKKEWLLQSIEGMIKEA 40 (71)
T ss_dssp S-EEEEETTTCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cceeeeccCCceEEEEecCcHHHHHHHHHHHHHHH
Confidence 45666667889999999999987777776666554
No 162
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.21 E-value=1.1e+02 Score=22.23 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 146 LYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
+-|..|+.++.+|+.++.-|+...+
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3467788888888888888876553
No 163
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=28.07 E-value=1.5e+02 Score=20.66 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=20.4
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEE
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
..+|++.+++++|... |+.|....
T Consensus 13 ~~~gi~~~if~aL~~~-~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKE-GIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHC-CCCEEEEE
Confidence 4699999999999999 89997443
No 164
>PRK11898 prephenate dehydratase; Provisional
Probab=27.96 E-value=2.3e+02 Score=26.50 Aligned_cols=60 Identities=8% Similarity=-0.005 Sum_probs=40.9
Q ss_pred EEEEecC-CCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHH
Q 042663 214 VRLVCSK-GEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVT 277 (293)
Q Consensus 214 I~I~c~~-r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~ 277 (293)
|-+.... ++|.|.++|..+... |+++....+-...++ .-+.|-+++.+. .+-+.++.++.
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~-~INLt~IeSRP~~~~~~~y~F~vd~eg~---~~~~~~~~al~ 260 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWR-GINLTRIESRPTKTGLGTYFFFIDVEGH---IDDVLVAEALK 260 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHC-CCCeeeEecccCCCCCccEEEEEEEEcc---CCCHHHHHHHH
Confidence 4445544 599999999999999 899999887765543 346677777654 23334554443
No 165
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=27.79 E-value=4.8e+02 Score=23.93 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=37.3
Q ss_pred ceEEEEEEecCCCC--hHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEee
Q 042663 210 RGFYVRLVCSKGEG--VAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVR 261 (293)
Q Consensus 210 ~~v~I~I~c~~r~g--ll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~ 261 (293)
..+.++|.|...++ +...+++.|++. ++.+.+.++.... +.+..++++...
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~-~~~~~~l~~~~~~~~~~~ei~a~l~~~ 195 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEA-AICLQGLGSVPAQEQGYKEIRAELVGH 195 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhC-CCceEEeEeeecCCCCeEEEEEEEEec
Confidence 35788999988754 588899999998 7999999986553 455555555543
No 166
>PF06546 Vert_HS_TF: Vertebrate heat shock transcription factor; InterPro: IPR010542 This domain represents the C-terminal region of vertebrate heat shock transcription factors. Heat shock transcription factors regulate the expression of heat shock proteins - a set of proteins that protect the cell from damage caused by stress and aid the cell's recovery after the removal of stress []. This C-terminal region is found with the N-terminal IPR000232 from INTERPRO, and may contain a three-stranded coiled-coil trimerisation domain and a CE2 regulatory region, the latter of which is involved in sustained heat shock response [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.36 E-value=73 Score=29.94 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=35.0
Q ss_pred CccccccccC--CCChHHHHHhhccccccccccCCCCCcccccccCCC
Q 042663 12 KDFELHDFID--DPNIDQFIDLIQGENEILEPSFGCTFVSECIVDNQI 57 (293)
Q Consensus 12 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~i~~~~~~~~~ 57 (293)
..-||+||++ |-+.|-|-++|||.. ++|+.+.+.|.|.+...
T Consensus 120 ~k~EL~dhLdsiD~sLE~LQ~mL~g~~----~siD~~~LldlFs~s~~ 163 (265)
T PF06546_consen 120 DKVELSDHLDSIDCSLENLQAMLRGQQ----FSIDTSALLDLFSPSLP 163 (265)
T ss_pred ChhhhhchhhhhhccHHHHHHHHhcCC----cccChHHHHhhcCCccc
Confidence 4469999998 789999999999987 99999988887755443
No 167
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=27.33 E-value=3.6e+02 Score=26.57 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=41.3
Q ss_pred cCCCChHHHHHHHHHhcCCceEEEEEeeeeCC-eEEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 219 SKGEGVAVSLYQALESLTSFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 219 ~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
+++||.|.++|..|... |++.....+-...+ ..-|.|-+.+.++.. -+.++.++..
T Consensus 305 ~~~pGaL~~~L~~Fa~~-giNLtkIeSRP~~~~~~~Y~Ffid~eg~~~---d~~~~~aL~~ 361 (386)
T PRK10622 305 GQQAGALVEALLVLRNH-NLIMTKLESRPIHGNPWEEMFYLDVQANLR---SAEMQKALKE 361 (386)
T ss_pred CCCCcHHHHHHHHHHHc-CCCeeEEEeeecCCCCceEEEEEEEeCCCC---CHHHHHHHHH
Confidence 68999999999999999 89999988776664 467788888876422 2344444444
No 168
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=26.96 E-value=1.7e+02 Score=25.03 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 106 RALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 106 ~h~~~ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
.-...+++-|.++.+.-.+++++ |..++=..|.| |++++.+|++|++++.....
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i----------S~qDeFAkwaK-l~Rk~~kl~~el~~~~~~~~ 90 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI----------SAQDEFAKWAK-LNRKLDKLEEELEKLNKSLS 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-----------TTTSHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33456777788888877787776 22224556776 89999999999998876553
No 169
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=26.75 E-value=75 Score=32.08 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 146 LYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
+-|+.||.|++.|++++.+|++.+.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888888888887654
No 170
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.63 E-value=2.1e+02 Score=19.42 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=20.7
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEe
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNL 245 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~v 245 (293)
..++++.+++.+|.+. |++|.-.+.
T Consensus 13 ~~~~~~~~i~~~L~~~-~i~v~~i~~ 37 (66)
T cd04916 13 NTVGVSARATAALAKA-GINIRMINQ 37 (66)
T ss_pred CCccHHHHHHHHHHHC-CCCEEEEEe
Confidence 4589999999999999 788865553
No 171
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=26.02 E-value=3.5e+02 Score=25.66 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=43.0
Q ss_pred EEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 214 VRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 214 I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
|-+.-+.+||.|.++|..|-.. |++.....+-..... .-+.|.+.+.+...+ ..++.++..
T Consensus 197 l~f~~~n~PGaL~~~L~~Fa~~-gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~---~~v~~AL~e 258 (279)
T COG0077 197 LIFSVPNKPGALYKALGVFAKR-GINLTKIESRPLKTGLGEYLFFIDIEGHIDD---PLVKEALEE 258 (279)
T ss_pred EEEEcCCCCchHHHHHHHHHHc-CcceeeEeecccCCCCeeEEEEEEEecCcCc---HhHHHHHHH
Confidence 3344458899999999999999 899998887766644 355677777655333 455555544
No 172
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=25.29 E-value=3.3e+02 Score=21.16 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEecCCCChH----HHHHHHHHhcCCce-EEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 215 RLVCSKGEGVA----VSLYQALESLTSFS-IQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 215 ~I~c~~r~gll----~~Il~aLe~l~gL~-V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
+|.-..++|++ .-|-++|..| |.. |..+++.. ++. +.+.....+..-..|+.+....|.|-
T Consensus 5 ~V~V~lK~~VlDPqG~ti~~aL~~l-g~~~V~~vR~gK-----~~e--l~ld~~~~e~a~~~v~~mcekLLaNp 70 (83)
T COG1828 5 RVYVTLKPGVLDPEGETIEKALHRL-GYNEVSDVRVGK-----VIE--LELDAESEEKAEEEVKEMCEKLLANP 70 (83)
T ss_pred EEEEEeCCcccCchhHHHHHHHHHc-CCcccceeeeee-----EEE--EEecCcchhHHHHHHHHHHHHHhCCC
Confidence 33334444443 4578899999 876 88877542 233 33433334444568888888877664
No 173
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=25.13 E-value=2.8e+02 Score=21.10 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=34.2
Q ss_pred EEEecCCCChH----HHHHHHHHhcCCce-EEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 215 RLVCSKGEGVA----VSLYQALESLTSFS-IQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 215 ~I~c~~r~gll----~~Il~aLe~l~gL~-V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
+|.-..++|++ .-|.++|..| |+. |..+.+.. ++.|.++. ...+.....++.+....|.|-
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~l-G~~~v~~Vr~GK-----~~~l~~~~--~~~e~a~~~v~~i~~~LLaNp 69 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRL-GYDGVKDVRVGK-----YIELELEA--DDEEEAEEQVEEICEKLLANP 69 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHT-T-TTEEEEEEEE-----EEEEEEE---SSHHHHHHHHHHHHHHTTS-T
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHc-CCcccCcEEEEE-----EEEEEEeC--CCHHHHHHHHHHHHHHhcCCC
Confidence 33334455544 4688899999 988 88877542 33444443 444444567777777766653
No 174
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=24.89 E-value=2.7e+02 Score=20.13 Aligned_cols=24 Identities=8% Similarity=0.254 Sum_probs=20.9
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEE
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
..+|++.+++++|... |+.|....
T Consensus 13 ~~~g~~~~if~~L~~~-~I~v~~i~ 36 (75)
T cd04912 13 GAHGFLAKVFEIFAKH-GLSVDLIS 36 (75)
T ss_pred CCccHHHHHHHHHHHc-CCeEEEEE
Confidence 4589999999999999 79997765
No 175
>PF15392 Joubert: Joubert syndrome-associated
Probab=24.71 E-value=2e+02 Score=27.74 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=39.8
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccC-----CCCCCCChhcHHHHHHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALV-----PNITKMDKASIVGDAVLYVQDLQMKAKKL 158 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~Lrslv-----P~~~K~dKasIL~~Ai~yI~~Lq~~~~~L 158 (293)
..+.+|.-..+..|+||++|.+-+..|..+- |.+++.+-..+-..-|...++++.+..+|
T Consensus 52 tekERrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdRl 116 (329)
T PF15392_consen 52 TEKERREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDRL 116 (329)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3345667788999999999999888886654 44555543344455566556655555544
No 176
>PHA03386 P10 fibrous body protein; Provisional
Probab=24.42 E-value=1.6e+02 Score=23.32 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=23.5
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 135 MDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 135 ~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
|+|-+||.-...-|+.+-.++..|+..+..++.
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEE 33 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 577888887777788766666666666666553
No 177
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=24.08 E-value=3.6e+02 Score=24.36 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHhcC-CceEEEEEeeeeCC-eEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 223 GVAVSLYQALESLT-SFSIQNSNLTTVSE-KFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 223 gll~~Il~aLe~l~-gL~V~sa~vst~~~-~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
....++.+++++.+ ..+|.+..+...|. .+...+++.+..+-.--+...+++++++.+.+.
T Consensus 205 ~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~ 267 (284)
T PF01545_consen 205 ELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRLREK 267 (284)
T ss_dssp HHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45678888887664 47999999999998 888888888765433334567899999998876
No 178
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=23.29 E-value=3.4e+02 Score=22.34 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccC
Q 042663 221 GEGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMH 268 (293)
Q Consensus 221 r~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~ 268 (293)
||...--+...|+.+ |..|..+.|.... |.|+.++.+.-.+....++
T Consensus 51 RP~thdLl~~~l~~l-g~~v~~V~I~~~~dg~f~A~L~l~~~~~~~~id 98 (135)
T PF02577_consen 51 RPLTHDLLSDLLEAL-GAEVERVVIDDLEDGVFYARLVLRQGGEEIEID 98 (135)
T ss_dssp S--HHHHHHHHHHHT-TEEEEEEEEEEEETTEEEEEEEEEETTTEEEEE
T ss_pred CCCHHHHHHHHHHHc-CCEEEEEEEEEEECCEEEEEEEEecCCEEEEEE
Confidence 454444455678888 8999999998765 6788888886433333443
No 179
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.58 E-value=73 Score=22.70 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 042663 151 LQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 151 Lq~~~~~L~~~~~~l~~~ 168 (293)
++.++.+++++++.++..
T Consensus 46 ~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 180
>PRK14637 hypothetical protein; Provisional
Probab=22.34 E-value=3.9e+02 Score=22.78 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=39.9
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccCh---HHHHHHHHHHH
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHL---TNMKLWVTKAL 280 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~---~~Lk~~i~~al 280 (293)
+.-|....+-.+++++ |++++...+...++.-++.+.+.- +.++++ ..+..+|..+|
T Consensus 6 ~~~~~~~~v~p~~~~~-g~eLvdve~~~~~~~~~lrV~ID~---~~gV~iddC~~vSr~Is~~L 65 (151)
T PRK14637 6 KDLGYFSECEPVVEGL-GCKLVDLSRRVQQAQGRVRAVIYS---AGGVGLDDCARVHRILVPRL 65 (151)
T ss_pred ccccHHHHHHHHHHhc-CCEEEEEEEEecCCCcEEEEEEEC---CCCCCHHHHHHHHHHHHHHh
Confidence 3468888999999999 999999999887765555555542 234655 35555555555
No 181
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.21 E-value=2.6e+02 Score=19.60 Aligned_cols=27 Identities=7% Similarity=0.084 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEeee
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLTT 247 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vst 247 (293)
+.+|++.+++++|.+. |..|.-.+..+
T Consensus 12 ~~~~~~~~i~~aL~~~-~I~v~~i~~g~ 38 (65)
T cd04918 12 RSSLILERAFHVLYTK-GVNVQMISQGA 38 (65)
T ss_pred CCccHHHHHHHHHHHC-CCCEEEEEecC
Confidence 3478999999999999 89996655443
No 182
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.03 E-value=3.8e+02 Score=27.35 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=37.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EE-EEEEEEeecC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FV-LTFTSSVRGS 263 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~-~t~~~kv~~~ 263 (293)
-|-+....++|.|.++|+.++.. |+++.+..+-...+. .- +.|-+.+.+.
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~-gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDR-HINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHC-CCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 33444467899999999999999 899999987665443 33 6777777644
No 183
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.85 E-value=1.4e+02 Score=22.57 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 143 DAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 143 ~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
+++.-|..|-.+++.|++++..|+
T Consensus 60 ~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 60 EGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577788888888888888887765
No 184
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=21.51 E-value=2.4e+02 Score=24.94 Aligned_cols=66 Identities=11% Similarity=0.170 Sum_probs=0.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEEeecC-CcccChHHHHHHHHH
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSSVRGS-DQNMHLTNMKLWVTK 278 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~kv~~~-e~~i~~~~Lk~~i~~ 278 (293)
+.+.|...+|||++-++.+.|..+ |+++.+....+.- +.=---|++++... ...++...|+..+.+
T Consensus 93 v~v~v~a~DrpgIv~~~T~lf~~~-~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~a 161 (176)
T COG2716 93 VWVYVDANDRPGIVEEFTALFDGH-GINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEA 161 (176)
T ss_pred EEEEEEecCCccHHHHHHHHHHhc-CCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHH
No 185
>PLN02317 arogenate dehydratase
Probab=21.17 E-value=4.5e+02 Score=26.07 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=34.4
Q ss_pred cCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe---------------EEEEEEEEeecC
Q 042663 219 SKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK---------------FVLTFTSSVRGS 263 (293)
Q Consensus 219 ~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~---------------~~~t~~~kv~~~ 263 (293)
+.++|.|.++|.+|... |+++....+-...+. +-|.|-+.+++.
T Consensus 291 ~~~pG~L~k~L~~Fa~~-~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 291 EEGPGVLFKALAVFALR-DINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred CCCCchHHHHHHHHHHC-CCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 56899999999999999 899998886654433 567777777654
No 186
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=21.10 E-value=2.4e+02 Score=21.71 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=42.3
Q ss_pred CceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCC---eEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 209 ERGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSE---KFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 209 ~~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~---~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
+++.++.|.-+.+||.|.+.+.+|-.. .+|+-.+....++ .++.. +++... .-...+...|-..|+
T Consensus 8 ~~E~~~~v~~PE~pGal~~F~~~l~~~--~nITeF~YR~~~~~~a~vlvg--i~v~~~-------~~~~~l~~~L~~~gy 76 (91)
T PF00585_consen 8 GREALFAVEFPERPGALKRFLDALGPR--NNITEFHYRYSGDDFARVLVG--IEVPDA-------EDLEELIERLKALGY 76 (91)
T ss_dssp --EEEEEEE--BSTTHCHHHHHCCSSS--E-EEEEEEE-TTTSCSEEEEE--EE-SST-------HHHHHHHHHHTSSS-
T ss_pred CCEEEEEEECCCCccHHHHHHHHhCCC--ceEEEEEEcCCCCCeeeEEEE--EEeCCH-------HHHHHHHHHHHHcCC
Confidence 567899999999999999999888665 3466666544443 33333 344321 225778888888888
Q ss_pred CcCC
Q 042663 286 EVLT 289 (293)
Q Consensus 286 ~~~~ 289 (293)
.+.-
T Consensus 77 ~~~d 80 (91)
T PF00585_consen 77 PYED 80 (91)
T ss_dssp EEEC
T ss_pred CeEE
Confidence 7754
No 187
>PLN02705 beta-amylase
Probab=20.74 E-value=1.6e+02 Score=31.09 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=20.1
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHhcc
Q 042663 100 PKVDRSRALISERRRRGKMKEKLYALRAL 128 (293)
Q Consensus 100 ~~~~r~~h~~~ER~RR~~in~~~~~Lrsl 128 (293)
+.+.|.....+||+||.--...|.-||..
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 33567777889999998666666666554
No 188
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.66 E-value=3.7e+02 Score=20.40 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 117 KMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 117 ~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
.|+.+|...|++|-..+-+++. +.+--.+|+.|+.+++..++-+..++.
T Consensus 32 ~lk~Klq~ar~~i~~lpgi~~s--~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGIDRS--VEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHhCCCccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666655443333322 445556788888877777776665554
No 189
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=20.55 E-value=3.4e+02 Score=23.74 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=38.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGS 263 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~ 263 (293)
.+.+.-.+.+|.|+++...+-.. |+++-+..+.....--..-+++.+.++
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrR-G~NIeSltv~~tE~~~~SRiTivv~g~ 55 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRR-GYNIESLTVGPTETPGLSRITIVVSGD 55 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhc-CcccceEEEEecCCCCceEEEEEEcCC
Confidence 45666678899999999999999 999999988776643355666666553
No 190
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.02 E-value=3.3e+02 Score=26.37 Aligned_cols=47 Identities=32% Similarity=0.340 Sum_probs=32.4
Q ss_pred HHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 118 MKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 118 in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
+.+....+-..++-++ -+=|+++-+-|.+|++++++|++++.+|++.
T Consensus 272 ~qe~~e~~L~~LnlPT----RsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 272 QQEIVEALLKMLNLPT----RSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444433344233 3347888899999999999999999888764
No 191
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.01 E-value=5.6e+02 Score=21.89 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCCChhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 108 LISERRRRGKMKEKLYALRALVPNITKMDKASI---VGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 108 ~~~ER~RR~~in~~~~~LrslvP~~~K~dKasI---L~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
....+..|+++......|+.--... ..-.+ ...+.+++..|+..++.|+.+.+.++..+
T Consensus 114 l~~~k~~r~k~~~~~~~l~~~~~~~---~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 114 LYRVKKERDKLRKQNKKLRQQGGLL---GVPALLRDYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777777777777543322 22233 56788999999999999999988876543
Done!