Query 042663
Match_columns 293
No_of_seqs 246 out of 1315
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042663.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042663hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 7.9E-18 2.7E-22 128.9 7.0 70 101-170 4-74 (82)
2 1hlo_A Protein (transcription 99.6 6E-16 2.1E-20 117.8 6.9 67 101-167 10-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 9.7E-16 3.3E-20 117.3 7.8 66 103-168 2-69 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 1.8E-15 6.2E-20 117.3 7.6 65 102-166 5-72 (88)
5 4h10_B Circadian locomoter out 99.6 1.3E-15 4.4E-20 113.3 5.8 61 99-159 4-65 (71)
6 4ati_A MITF, microphthalmia-as 99.6 1.3E-15 4.5E-20 124.1 6.3 68 97-164 21-92 (118)
7 1nlw_A MAD protein, MAX dimeri 99.6 8.3E-15 2.8E-19 111.6 8.8 65 104-168 2-69 (80)
8 1an4_A Protein (upstream stimu 99.6 7.5E-16 2.5E-20 112.7 2.8 57 100-156 2-64 (65)
9 1a0a_A BHLH, protein (phosphat 99.5 1.3E-15 4.6E-20 111.0 1.3 53 103-155 2-61 (63)
10 4h10_A ARYL hydrocarbon recept 99.5 1E-14 3.5E-19 109.2 2.7 55 99-153 5-63 (73)
11 3u5v_A Protein MAX, transcript 99.4 5.6E-14 1.9E-18 106.0 3.5 59 101-159 3-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 4.5E-12 1.5E-16 93.5 3.7 55 101-155 10-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 1.2E-11 4.1E-16 89.1 5.7 54 103-156 2-58 (60)
14 4f3l_A Mclock, circadian locom 99.0 3E-10 1E-14 107.4 5.7 57 98-154 7-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.8E-09 6.2E-14 103.2 5.0 57 98-154 8-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2E-08 6.8E-13 76.3 7.0 52 115-166 4-59 (83)
17 2lfh_A DNA-binding protein inh 98.7 3E-09 1E-13 77.9 0.8 46 108-153 19-67 (68)
18 4aya_A DNA-binding protein inh 98.0 7.9E-06 2.7E-10 63.8 6.3 48 109-156 31-81 (97)
19 1zpv_A ACT domain protein; str 97.3 0.0024 8.1E-08 47.7 10.6 71 211-285 5-75 (91)
20 1u8s_A Glycine cleavage system 96.8 0.0055 1.9E-07 52.3 9.4 71 211-286 6-76 (192)
21 2nyi_A Unknown protein; protei 96.5 0.0099 3.4E-07 51.2 8.5 49 211-260 5-53 (195)
22 2nyi_A Unknown protein; protei 96.4 0.016 5.6E-07 49.8 9.3 72 210-286 92-169 (195)
23 2ko1_A CTR148A, GTP pyrophosph 95.6 0.13 4.6E-06 37.3 10.0 49 211-260 5-53 (88)
24 1u8s_A Glycine cleavage system 95.5 0.094 3.2E-06 44.5 10.3 73 210-286 92-172 (192)
25 3p96_A Phosphoserine phosphata 94.2 0.19 6.5E-06 47.4 9.5 73 210-285 11-83 (415)
26 3n0v_A Formyltetrahydrofolate 93.9 0.35 1.2E-05 44.3 10.3 70 211-284 8-79 (286)
27 3lou_A Formyltetrahydrofolate 93.9 0.34 1.2E-05 44.5 10.3 74 210-284 9-84 (292)
28 3o1l_A Formyltetrahydrofolate 93.8 0.4 1.4E-05 44.2 10.6 70 210-282 21-92 (302)
29 3obi_A Formyltetrahydrofolate 93.3 0.52 1.8E-05 43.1 10.3 73 210-285 5-79 (288)
30 3nrb_A Formyltetrahydrofolate 90.8 1.1 3.7E-05 41.0 9.3 67 210-281 6-74 (287)
31 2f1f_A Acetolactate synthase i 85.5 2.1 7.1E-05 36.0 6.9 47 212-259 4-52 (164)
32 2jhe_A Transcription regulator 85.3 1.7 5.7E-05 35.1 6.2 35 213-248 2-36 (190)
33 2fgc_A Acetolactate synthase, 84.0 2.6 9E-05 36.4 7.0 47 212-259 30-78 (193)
34 2pc6_A Probable acetolactate s 82.8 4.3 0.00015 34.1 7.8 47 212-259 5-53 (165)
35 2f06_A Conserved hypothetical 82.6 6.9 0.00023 31.0 8.7 64 213-289 74-137 (144)
36 2wt7_A Proto-oncogene protein 80.4 5.8 0.0002 27.8 6.6 46 111-169 1-46 (63)
37 1y7p_A Hypothetical protein AF 79.5 5.3 0.00018 35.3 7.4 61 211-277 4-68 (223)
38 2oqq_A Transcription factor HY 65.7 7 0.00024 25.5 3.5 25 146-170 3-27 (42)
39 1zme_C Proline utilization tra 60.6 9.2 0.00031 26.4 3.8 24 146-169 44-67 (70)
40 2jee_A YIIU; FTSZ, septum, coi 60.2 13 0.00045 27.6 4.7 27 141-167 15-41 (81)
41 1dh3_A Transcription factor CR 59.6 11 0.00036 25.9 3.8 24 146-169 22-45 (55)
42 2f06_A Conserved hypothetical 51.2 84 0.0029 24.4 9.5 35 212-247 7-41 (144)
43 2dgc_A Protein (GCN4); basic d 50.1 18 0.00061 25.4 3.8 25 145-169 29-53 (63)
44 1pd7_B MAD1; PAH2, SIN3, eukar 48.6 21 0.00072 20.8 3.2 20 135-154 2-21 (26)
45 2lqj_A Mg2+ transport protein; 48.2 78 0.0027 23.7 7.5 67 211-282 8-77 (94)
46 1jnm_A Proto-oncogene C-JUN; B 46.2 22 0.00076 24.5 3.8 25 145-169 21-45 (62)
47 2qmx_A Prephenate dehydratase; 45.7 84 0.0029 28.3 8.6 60 215-278 204-264 (283)
48 2l5g_A GPS2 protein, G protein 45.0 38 0.0013 21.5 4.2 31 135-165 4-34 (38)
49 3ra3_B P2F; coiled coil domain 43.7 17 0.00059 21.0 2.3 22 148-169 2-23 (28)
50 1t2k_D Cyclic-AMP-dependent tr 43.1 27 0.00092 24.0 3.8 25 145-169 21-45 (61)
51 2dtj_A Aspartokinase; protein- 42.1 1.3E+02 0.0045 24.5 8.7 37 207-244 11-48 (178)
52 2er8_A Regulatory protein Leu3 41.4 12 0.00043 26.0 1.9 22 146-167 49-70 (72)
53 1kd8_B GABH BLL, GCN4 acid bas 38.2 39 0.0013 21.2 3.5 22 148-169 3-24 (36)
54 3he4_B Synzip5; heterodimeric 38.0 61 0.0021 20.7 4.5 26 141-166 5-30 (46)
55 2re1_A Aspartokinase, alpha an 38.0 94 0.0032 25.1 7.1 37 207-244 21-58 (167)
56 1gd2_E Transcription factor PA 34.7 41 0.0014 24.1 3.8 18 146-163 29-46 (70)
57 2wuj_A Septum site-determining 34.4 37 0.0013 23.1 3.4 28 140-167 28-55 (57)
58 2ke4_A CDC42-interacting prote 32.9 94 0.0032 23.6 5.8 31 138-168 61-91 (98)
59 3m48_A General control protein 32.7 34 0.0012 21.1 2.5 21 149-169 3-23 (33)
60 3mwb_A Prephenate dehydratase; 32.6 1.5E+02 0.0052 27.0 8.3 62 213-278 203-266 (313)
61 2dt9_A Aspartokinase; protein- 32.5 1.9E+02 0.0066 23.1 9.2 37 207-244 12-49 (167)
62 3p96_A Phosphoserine phosphata 32.3 1.6E+02 0.0055 26.9 8.6 73 211-288 101-174 (415)
63 3luy_A Probable chorismate mut 32.3 2.5E+02 0.0087 25.7 9.8 56 220-279 217-273 (329)
64 3c3g_A Alpha/beta peptide with 31.7 59 0.002 20.0 3.5 22 148-169 2-23 (33)
65 2re1_A Aspartokinase, alpha an 31.4 1.6E+02 0.0056 23.5 7.6 37 207-244 99-138 (167)
66 3muj_A Transcription factor CO 30.7 57 0.002 26.5 4.4 35 117-151 95-133 (138)
67 2oxj_A Hybrid alpha/beta pepti 30.7 62 0.0021 20.0 3.5 21 148-168 3-23 (34)
68 2wq1_A General control protein 30.5 63 0.0022 19.8 3.5 22 148-169 2-23 (33)
69 3v86_A De novo design helix; c 30.4 52 0.0018 18.8 2.9 19 148-166 2-20 (27)
70 2qmw_A PDT, prephenate dehydra 29.6 1.5E+02 0.0053 26.3 7.6 61 213-278 188-252 (267)
71 2akf_A Coronin-1A; coiled coil 29.6 84 0.0029 18.8 3.8 22 147-168 7-28 (32)
72 3dhx_A Methionine import ATP-b 29.4 1.8E+02 0.0061 21.8 7.6 40 222-263 35-74 (106)
73 1gmj_A ATPase inhibitor; coile 29.3 1.8E+02 0.006 21.7 6.6 45 115-167 35-79 (84)
74 1kd8_A GABH AIV, GCN4 acid bas 27.9 49 0.0017 20.7 2.7 20 149-168 4-23 (36)
75 3c3f_A Alpha/beta peptide with 26.8 80 0.0027 19.5 3.5 22 148-169 3-24 (34)
76 2yy0_A C-MYC-binding protein; 26.7 65 0.0022 21.7 3.5 22 148-169 28-49 (53)
77 2zzt_A Putative uncharacterize 26.6 1.6E+02 0.0056 21.8 6.3 60 224-283 11-71 (107)
78 3h90_A Ferrous-iron efflux pum 26.6 1.9E+02 0.0064 25.2 7.6 60 224-283 207-267 (283)
79 2ge7_A Nucleocapsid protein; N 26.5 26 0.00087 27.5 1.5 14 20-33 83-96 (108)
80 1ci6_A Transcription factor AT 26.2 74 0.0025 22.0 3.8 24 103-126 6-29 (63)
81 3byp_A CZRB protein; membrane 25.7 1.8E+02 0.0062 20.6 7.7 60 224-283 11-73 (94)
82 2hy6_A General control protein 25.2 60 0.002 20.1 2.7 21 148-168 3-23 (34)
83 3w03_C DNA repair protein XRCC 25.2 87 0.003 26.6 4.8 31 139-169 145-175 (184)
84 2rp4_A Transcription factor P5 24.2 41 0.0014 24.4 2.1 36 200-235 10-45 (76)
85 2dnr_A Synaptojanin-1; RRM dom 24.0 1.6E+02 0.0054 22.0 5.6 43 210-256 8-56 (91)
86 1xkm_B Distinctin chain B; por 23.9 80 0.0027 17.9 2.9 19 139-157 4-22 (26)
87 1uo4_A General control protein 23.5 68 0.0023 19.8 2.7 22 148-169 3-24 (34)
88 1uii_A Geminin; human, DNA rep 23.4 1.2E+02 0.0041 22.5 4.6 26 141-166 41-66 (83)
89 2cjr_A Nucleocapsid protein; o 22.8 33 0.0011 27.6 1.5 14 20-33 105-118 (128)
90 1hwt_C Protein (heme activator 22.4 29 0.001 24.5 1.1 22 145-166 57-78 (81)
91 4dzn_A Coiled-coil peptide CC- 21.7 1.1E+02 0.0037 18.3 3.3 20 148-167 4-23 (33)
92 3q4f_C DNA repair protein XRCC 20.4 1.2E+02 0.0043 25.7 4.7 28 140-167 155-182 (186)
93 3plt_A Sphingolipid long chain 20.3 1.9E+02 0.0064 25.5 6.1 50 103-165 101-150 (234)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.72 E-value=7.9e-18 Score=128.92 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=65.4
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCCC-CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPNI-TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~-~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
..+|..|+.+||+||++||++|.+|+++||++ .|++|++||.+||+||++||.+++.|+++++.|+....
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999986 89999999999999999999999999999999987653
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=6e-16 Score=117.77 Aligned_cols=67 Identities=30% Similarity=0.473 Sum_probs=62.9
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCCC--CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPNI--TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~--~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
..+|..|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||+.|++++++|+++++.|+.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999974 69999999999999999999999999999998874
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=9.7e-16 Score=117.32 Aligned_cols=66 Identities=30% Similarity=0.461 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCC--CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPN--ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~--~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
+|..|+..||+||.+||+.|..|+++||. ..|++|++||..||+||+.|+.+++.|+.+++.|+..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 4899999999999999999999988888888777643
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=1.8e-15 Score=117.26 Aligned_cols=65 Identities=32% Similarity=0.502 Sum_probs=58.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhccCCCC---CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 102 VDRSRALISERRRRGKMKEKLYALRALVPNI---TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 102 ~~r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
.+|..|+..||+||.+||++|..|+++||.. .|++|++||.+||+||++|+.+.+.|..+++.|+
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999974 6999999999999999999999888777666554
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=113.33 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=55.2
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccCCC-CCCCChhcHHHHHHHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALVPN-ITKMDKASIVGDAVLYVQDLQMKAKKLK 159 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~-~~K~dKasIL~~Ai~yI~~Lq~~~~~L~ 159 (293)
+...+|.+|+.+||+||++||++|.+|++|||. ..|+||++||..||+||+.||.++.-|+
T Consensus 4 k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 4 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 455789999999999999999999999999997 4699999999999999999998876653
No 6
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=1.3e-15 Score=124.10 Aligned_cols=68 Identities=24% Similarity=0.396 Sum_probs=53.0
Q ss_pred CCCCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC----CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 97 TKKPKVDRSRALISERRRRGKMKEKLYALRALVPNI----TKMDKASIVGDAVLYVQDLQMKAKKLKTEIAD 164 (293)
Q Consensus 97 ~~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~ 164 (293)
..+...+|..|+.+||+||++||++|.+|++|||++ .|++|++||.+||+||++||++++.|+++...
T Consensus 21 ~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 21 LAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556889999999999999999999999999975 37789999999999999999999999876433
No 7
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=8.3e-15 Score=111.61 Aligned_cols=65 Identities=26% Similarity=0.357 Sum_probs=59.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 104 RSRALISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 104 r~~h~~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
|..|+..||+||..||++|..|+++||. ..|.+|++||.+|++||+.|+.+.++|+.+++.|+..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999996 4688999999999999999999999999988887653
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=7.5e-16 Score=112.72 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=51.4
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHhccCCCCC------CCChhcHHHHHHHHHHHHHHHHH
Q 042663 100 PKVDRSRALISERRRRGKMKEKLYALRALVPNIT------KMDKASIVGDAVLYVQDLQMKAK 156 (293)
Q Consensus 100 ~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~~------K~dKasIL~~Ai~yI~~Lq~~~~ 156 (293)
...+|..|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.+
T Consensus 2 d~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 2 DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred cHHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999854 78999999999999999987653
No 9
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=1.3e-15 Score=110.96 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=48.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhcHHHHHHHHHHHHHHHH
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPNI-------TKMDKASIVGDAVLYVQDLQMKA 155 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~-------~K~dKasIL~~Ai~yI~~Lq~~~ 155 (293)
+|.+|+.+||+||++||..|.+|++|||++ .|.+||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999953 57789999999999999998765
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1e-14 Score=109.18 Aligned_cols=55 Identities=33% Similarity=0.396 Sum_probs=50.3
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHHHHhccCCCC----CCCChhcHHHHHHHHHHHHHH
Q 042663 99 KPKVDRSRALISERRRRGKMKEKLYALRALVPNI----TKMDKASIVGDAVLYVQDLQM 153 (293)
Q Consensus 99 ~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~yI~~Lq~ 153 (293)
+.+.+|..|+.+||+||++||+.|.+|++|||.+ .|+|||+||..||+||+.|+.
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 4557889999999999999999999999999964 799999999999999999853
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=5.6e-14 Score=105.98 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=48.4
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhcHHHHHHHHHHHHHHHHHHHH
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPN---ITKM-DKASIVGDAVLYVQDLQMKAKKLK 159 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~---~~K~-dKasIL~~Ai~yI~~Lq~~~~~L~ 159 (293)
..+|..|+..||+||..||++|.+|+.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999994 4555 799999999999999999988764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.23 E-value=4.5e-12 Score=93.55 Aligned_cols=55 Identities=27% Similarity=0.396 Sum_probs=50.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhccCCC--CCCCChhcHHHHHHHHHHHHHHHH
Q 042663 101 KVDRSRALISERRRRGKMKEKLYALRALVPN--ITKMDKASIVGDAVLYVQDLQMKA 155 (293)
Q Consensus 101 ~~~r~~h~~~ER~RR~~in~~~~~LrslvP~--~~K~dKasIL~~Ai~yI~~Lq~~~ 155 (293)
..+|..|+..||+|+..||+.|..||.+||. ..|++|+.||..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999996 468999999999999999998754
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.22 E-value=1.2e-11 Score=89.11 Aligned_cols=54 Identities=28% Similarity=0.300 Sum_probs=49.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCC---CCCChhcHHHHHHHHHHHHHHHHH
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPNI---TKMDKASIVGDAVLYVQDLQMKAK 156 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~---~K~dKasIL~~Ai~yI~~Lq~~~~ 156 (293)
+|..|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999963 589999999999999999987653
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=3e-10 Score=107.41 Aligned_cols=57 Identities=25% Similarity=0.435 Sum_probs=42.7
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhccCC-CCCCCChhcHHHHHHHHHHHHHHH
Q 042663 98 KKPKVDRSRALISERRRRGKMKEKLYALRALVP-NITKMDKASIVGDAVLYVQDLQMK 154 (293)
Q Consensus 98 ~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP-~~~K~dKasIL~~Ai~yI~~Lq~~ 154 (293)
.+++.+|.+|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 456678999999999999999999999999999 568999999999999999999764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.83 E-value=1.8e-09 Score=103.18 Aligned_cols=57 Identities=32% Similarity=0.353 Sum_probs=50.5
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHHHHhccCC----CCCCCChhcHHHHHHHHHHHHHHH
Q 042663 98 KKPKVDRSRALISERRRRGKMKEKLYALRALVP----NITKMDKASIVGDAVLYVQDLQMK 154 (293)
Q Consensus 98 ~~~~~~r~~h~~~ER~RR~~in~~~~~LrslvP----~~~K~dKasIL~~Ai~yI~~Lq~~ 154 (293)
.+.+.+|.+|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+..
T Consensus 8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 345678999999999999999999999999999 568999999999999999999854
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.74 E-value=2e-08 Score=76.33 Aligned_cols=52 Identities=21% Similarity=0.379 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 115 RGKMKEKLYALRALVPNI----TKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 115 R~~in~~~~~LrslvP~~----~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
|..||+++.+|..|||.+ .|.+|++||..|++||++||++.++++++...++
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k 59 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 59 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999964 5789999999999999999999998877665443
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.68 E-value=3e-09 Score=77.95 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHHH
Q 042663 108 LISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQM 153 (293)
Q Consensus 108 ~~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq~ 153 (293)
+..||+|+..||+.|..||.+||. ..|++|..+|.-||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 356999999999999999999996 3688999999999999999974
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.04 E-value=7.9e-06 Score=63.83 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCCCChhcHHHHHHHHHHHHHHHHH
Q 042663 109 ISERRRRGKMKEKLYALRALVPN---ITKMDKASIVGDAVLYVQDLQMKAK 156 (293)
Q Consensus 109 ~~ER~RR~~in~~~~~LrslvP~---~~K~dKasIL~~Ai~yI~~Lq~~~~ 156 (293)
..||.|=..||+.|..||.+||. ..|++|..+|.-||+||..|+.-++
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 34577888899999999999996 4688999999999999999987554
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.34 E-value=0.0024 Score=47.68 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
.+.|.|.|+.+||++.+|..+|-+. |.+|.+.+..+..+.+...+.+++.+ ..++..|..++...--..|.
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~-~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~~~~~~~ 75 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAEL-GLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAFGQTLNV 75 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHHHHHHTE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHc-CCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHHHHHcCC
Confidence 4779999999999999999999999 89999999887778888888777643 34678888888765444443
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.82 E-value=0.0055 Score=52.28 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFE 286 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~ 286 (293)
.+.|.|.|+.++|+++.|..+|... |++|..++..+..+.|...+.+... . .....|+..+..++-..|+.
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~-g~NI~d~~~~~~~~~f~~~~~v~~~--~--~~~~~l~~~L~~~~~~~~~~ 76 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQA-GCNIIDSRIAMFGKEFTLLMLISGS--P--SNITRVETTLPLLGQQHDLI 76 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEEC--H--HHHHHHHHHHHHHHHHHTCE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHC-CCCEEeeeeeecCCceEEEEEEecC--C--CCHHHHHHHHHHHHHhcCCE
Confidence 4789999999999999999999999 9999999999888988887666542 2 24567777777666444444
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.46 E-value=0.0099 Score=51.16 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEe
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSV 260 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv 260 (293)
.+.|.|.|+.++|+++.|..+|..+ |++|+.+...+..+.|.+.+.+..
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~-g~NI~da~q~~~~~~f~m~~~v~~ 53 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNI-SANVESSRMACLGGDFAMIVLVSL 53 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEeEEECCeEEEEEEEEe
Confidence 4789999999999999999999999 999999999999999888766654
No 22
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.36 E-value=0.016 Score=49.80 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=56.1
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC------CeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS------EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~------~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
..+.|.|.|+.++|++..|..+|-++ |++|..+...+.+ +.|++.+.+.+.. ..+ ..|+..+....-..
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~-g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~---~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKK-GANIVELETETLPAPFAGFTLFRMGSRVAFPF---PLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG---GGH-HHHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHc-CCCEEEceeeecccccCCCCeEEEEEEEEcCC---Ccc-HHHHHHHHHHHHHc
Confidence 34789999999999999999999999 9999999988775 5777777666542 344 67888877665554
Q ss_pred CCC
Q 042663 284 GFE 286 (293)
Q Consensus 284 g~~ 286 (293)
|.+
T Consensus 167 ~~d 169 (195)
T 2nyi_A 167 GVD 169 (195)
T ss_dssp TCE
T ss_pred CeE
Confidence 443
No 23
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.56 E-value=0.13 Score=37.28 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=40.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEe
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSV 260 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv 260 (293)
.+.|.|.+..++|+|.+|..+|.+. |.+|.+.+..+.++.+...|.+.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~-~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKF-DTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTS-SSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHC-CCCeEEEEEEEcCCEEEEEEEEEE
Confidence 4678999999999999999999999 899999998776664455555555
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.54 E-value=0.094 Score=44.49 Aligned_cols=73 Identities=11% Similarity=0.128 Sum_probs=56.7
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--------CeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--------EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--------~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
..+.|.|.|+.++|++..|.++|-+. |++|..+...+.+ +.|+..+.+.+. ...++..|+..+....-
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~-~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~---~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQR-QIGMASLSAQTISKDKLHSEQNQFHIAISARVD---SGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHT-TCCEEEEEEEEEC--------CEEEEEEEEEEC---TTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHc-CCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC---CCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999 8999998877653 466666665542 35678889988887665
Q ss_pred hcCCC
Q 042663 282 NQGFE 286 (293)
Q Consensus 282 ~~g~~ 286 (293)
..|.+
T Consensus 168 ~~~~~ 172 (192)
T 1u8s_A 168 ALDVQ 172 (192)
T ss_dssp HHTCE
T ss_pred HhCce
Confidence 54543
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.20 E-value=0.19 Score=47.37 Aligned_cols=73 Identities=12% Similarity=0.198 Sum_probs=56.8
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
..+.|.|.|+.|+|+...|...|-+. |.+|+.++-...++.|...+.+.+.. ..++...|+..+...--.-|.
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~-~~nI~d~~q~~~~~~f~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~~ 83 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRH-GVELLNVEQVVIRHRLTLGVLVCCPA--DVADGPALRHDVEAAIRKVGL 83 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTT-TCEEEEEEEEEETTEEEEEEEEEECH--HHHTSHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEEeeeEEECCEeEEEEEEEecC--CcCCHHHHHHHHHHHHHHcCe
Confidence 35789999999999999999999999 99999999888889887776666532 223556788777665444443
No 26
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=93.91 E-value=0.35 Score=44.28 Aligned_cols=70 Identities=10% Similarity=0.099 Sum_probs=53.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcC
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQG 284 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g 284 (293)
.+.|.|.|++++|+...|...|-+. |.+|..++-. ..++.|+..+.+.. .+ ..+...|+..+...-..-|
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~-~~~~~~L~~~f~~la~~l~ 79 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQ-RCYVTEHHSFDDRQSGRFFIRVEFRQ--PD-DFDEAGFRAGLAERSEAFG 79 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEEEEEEEC--CS-SCCHHHHHHHHHHHHGGGT
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHC-CCCeeeeeeeccCCCCeeEEEEEEec--CC-CCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999 8999998866 34577766555543 22 5788899888875433333
No 27
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.90 E-value=0.34 Score=44.47 Aligned_cols=74 Identities=9% Similarity=0.185 Sum_probs=53.2
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcC
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQG 284 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g 284 (293)
..+.|.|.|++++|+...|...|-+. |.+|+.++-. ..++.|+..+.+.....+...+...|+..+...-..-|
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~ 84 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRH-RCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERFR 84 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHT
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHC-CCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999 9999998866 34577766555444211324678888888865443333
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=93.82 E-value=0.4 Score=44.25 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=53.4
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee--CCeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV--SEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~--~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
..+.|.|.|++++|+...|...|-+. |.+|+.++-... ++.|+..+.+.. .+...+...|+..+...-..
T Consensus 21 ~~~iLtv~c~DrpGIVa~VS~~La~~-g~NI~d~~q~~d~~~g~FfMr~~~~~--~~~~~~~~~L~~~l~~la~~ 92 (302)
T 3o1l_A 21 RTFRLVIACPDRVGIVAKVSNFLASH-NGWITEASHHSDNLSGWFFMRHEIRA--DTLPFDLDGFREAFTPIAEE 92 (302)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TCCEEEEEEEEETTTTEEEEEEEEEG--GGSSSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHC-CCCEEEeeEEecCCCCeEEEEEEEec--CCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999 999999886654 577766554433 33346788888888654333
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.28 E-value=0.52 Score=43.15 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=55.1
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCC
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGF 285 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~ 285 (293)
..+.|.|.|++++|+...|...|-+. |.+|..++-. ..++.|+..+.+.+ .+..++...|+..+...-..-|.
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~~~~~~~~L~~~f~~la~~~~m 79 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFEN-GQNILDAQQYNDTESGHFFMRVVFNA--AAKVIPLASLRTGFGVIAAKFTM 79 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHT-TEEEEEEEEEEETTTTEEEEEEEEEE--SSCCCCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHC-CCcEEeeeeeecCCCCceEEEEEEEc--CCCCCCHHHHHHHHHHHHHHcCC
Confidence 34789999999999999999999999 9999988864 33467776666554 33346788898888755444343
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.76 E-value=1.1 Score=40.95 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=48.1
Q ss_pred ceEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEee--eeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHh
Q 042663 210 RGFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLT--TVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALV 281 (293)
Q Consensus 210 ~~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vs--t~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all 281 (293)
..+.|.|.|++++|+...|...|-+. |.+|+.++-. ..++.|+..+.+.. .. .+...|+..+...-.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~-g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~--~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNN-GANIVEAEQFNDEDSSKFFMRVSVEI--PV--AGVNDFNSAFGKVVE 74 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHT-TCEEEEEEEEEETTTTEEEEEEEEEC--CC-----CHHHHHHHHHHG
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHC-CCCEEeeeeeecCCCCeEEEEEEEEc--CC--CCHHHHHHHHHHHHH
Confidence 35789999999999999999999999 9999998864 33567766554443 22 334477777755433
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=85.49 E-value=2.1 Score=35.99 Aligned_cols=47 Identities=6% Similarity=0.128 Sum_probs=37.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEE
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSS 259 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~k 259 (293)
..|.|....++|+|.+|..+|... |++|.+.++.... +....+|++.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~r-g~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQR-GYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCCeeeceeeecCCCCEEEEEEEEe
Confidence 468889999999999999999999 8999999987555 3344454443
No 32
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=85.27 E-value=1.7 Score=35.10 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=32.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeee
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTV 248 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~ 248 (293)
.|+|.|..|+|++.+|+++|-.. +.++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~-~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLR-GIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHT-TCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHc-CCCeEEEEEecC
Confidence 58899999999999999999999 899999998654
No 33
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=83.99 E-value=2.6 Score=36.44 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=37.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEE
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSS 259 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~k 259 (293)
..|.|..+.+||.|.+|...|... |++|.+.++.... +...++|++.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrR-G~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARR-GFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTT-TCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHC-CceEEEEEeeccCCCCEEEEEEEEE
Confidence 568888899999999999999999 9999998886444 3344555543
No 34
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=82.84 E-value=4.3 Score=34.08 Aligned_cols=47 Identities=9% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC--CeEEEEEEEE
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS--EKFVLTFTSS 259 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~--~~~~~t~~~k 259 (293)
..|.|....++|+|.+|..+|... |++|.+.++.... +....+|++.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~r-g~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSAR-GYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHH-TCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHC-CCcEEEEEEEecCCCCEEEEEEEEe
Confidence 468889999999999999999999 8999999987554 3445555544
No 35
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=82.56 E-value=6.9 Score=31.01 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=42.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcCC
Q 042663 213 YVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVLT 289 (293)
Q Consensus 213 ~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~~ 289 (293)
.|-+..+.+||.+.+++++|.+. |++|...-.+..++...+.| .+. . ..+...+|...||++..
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~-~InI~~~~~~~~~~~~~~~i--~~~---------d-~~~A~~~L~~~g~~v~~ 137 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAE-GVFIEYMYSFANNNVANVVI--RPS---------N-MDKCIEVLKEKKVDLLA 137 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEE--EES---------C-HHHHHHHHHHTTCEEEC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHC-CCCEEEEEEEccCCcEEEEE--EeC---------C-HHHHHHHHHHcCCEEec
Confidence 35556779999999999999999 89996544332344443333 331 1 23455678889998753
No 36
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=80.38 E-value=5.8 Score=27.82 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 111 ERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 111 ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
||++|.+...+..+-++= ..--.|+..|+.+++.|+.++..|...+
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777777777662 3345777778888877777777776544
No 37
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=79.46 E-value=5.3 Score=35.26 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=41.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeC----CeEEEEEEEEeecCCcccChHHHHHHHH
Q 042663 211 GFYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVS----EKFVLTFTSSVRGSDQNMHLTNMKLWVT 277 (293)
Q Consensus 211 ~v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~----~~~~~t~~~kv~~~e~~i~~~~Lk~~i~ 277 (293)
.+.|.|.+..++|+|++|+.+|-+. +.+|.+.+..+.. +. ..++++++... ++..|-.+|.
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~-kiNIltIn~~~~~kG~~ng-~A~I~IEV~d~----~Le~LL~kLr 68 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEE-GGNITFAQTFLIKHGEHEG-KALIYFEIEGG----DFEKILERVK 68 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC-----CEEEEEEEECCSSTTTT-EEEEEEEECSS----CHHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHc-CCCceEEEEEccccCCcCC-EEEEEEEECCC----CHHHHHHHHh
Confidence 4678999999999999999999999 7999999987754 33 23344666422 5666655543
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=65.68 E-value=7 Score=25.48 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 042663 146 LYVQDLQMKAKKLKTEIADLEASLT 170 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~~~~ 170 (293)
.|+..|+.+++.|+..+.+|+..++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999988888887653
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=60.57 E-value=9.2 Score=26.44 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 146 LYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
.||..|+.+++.|+..+..|++.+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999988765
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.16 E-value=13 Score=27.63 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
++.||+-|.-||.++++|++++..|..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999887654
No 41
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.56 E-value=11 Score=25.86 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 146 LYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
.||..|+.++..|+.++..|....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999988888887654
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=51.19 E-value=84 Score=24.39 Aligned_cols=35 Identities=6% Similarity=0.094 Sum_probs=29.3
Q ss_pred EEEEEEecCCCChHHHHHHHHHhcCCceEEEEEeee
Q 042663 212 FYVRLVCSKGEGVAVSLYQALESLTSFSIQNSNLTT 247 (293)
Q Consensus 212 v~I~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst 247 (293)
..|.|..+.+||.+.+|..+|.+. |++|....+..
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~-~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKE-NINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHT-TCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHC-CCCEEEEEEEe
Confidence 356777789999999999999999 89998876653
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.15 E-value=18 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 145 VLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 145 i~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
-.|+..|+.+++.|+.++..|...+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667777777777777777766543
No 44
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=48.64 E-value=21 Score=20.82 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=15.8
Q ss_pred CChhcHHHHHHHHHHHHHHH
Q 042663 135 MDKASIVGDAVLYVQDLQMK 154 (293)
Q Consensus 135 ~dKasIL~~Ai~yI~~Lq~~ 154 (293)
+....+|-+|.+|+...+++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45677899999999877653
No 45
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=48.17 E-value=78 Score=23.66 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=44.0
Q ss_pred eEEEEEEecCC--CChHHHHHHHHHhcCCceEEEEEeeeeC-CeEEEEEEEEeecCCcccChHHHHHHHHHHHhh
Q 042663 211 GFYVRLVCSKG--EGVAVSLYQALESLTSFSIQNSNLTTVS-EKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVN 282 (293)
Q Consensus 211 ~v~I~I~c~~r--~gll~~Il~aLe~l~gL~V~sa~vst~~-~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~ 282 (293)
.+.|.|.|... ..+...|+++|+.. ++.+.+..+..++ +.+..+.++-.. ..+...|..-+....+.
T Consensus 8 ~Y~v~Vic~~~~e~~vR~lL~~~L~~~-~~~l~~l~s~~~~~~~veI~A~L~at----~~~~~~Le~iv~rLs~e 77 (94)
T 2lqj_A 8 PYQVRVICRPKAETYVRAHIVQRTSSN-DITLRGIRTGPAGDDNITLTAHLLMV----GHTPAKLERLVAELSLQ 77 (94)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHH-TEEEEEEEEEECSSSCEEEEEEEEEE----SCCHHHHHHHHHHHHHS
T ss_pred EEEEEEEECcHHHHHHHHHHHHHHhcC-CCceeEeeeecCCCCeEEEEEEEEec----CCCHHHHHHHHHHHhCC
Confidence 48899999876 66888899999998 7999998865544 334445444442 23344555555444443
No 46
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.24 E-value=22 Score=24.55 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 145 VLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 145 i~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
-.|+..|+.+++.|+.++..|...+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777666544
No 47
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=45.66 E-value=84 Score=28.32 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=43.8
Q ss_pred EEEecCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 215 RLVCSKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 215 ~I~c~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
-+..+.+||.|.++|..|... |+++....+-...+. .-|.|-+.+.++ ++-+.++.++..
T Consensus 204 ~f~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfvD~eg~---~~d~~v~~aL~~ 264 (283)
T 2qmx_A 204 VFALPNEQGSLFRALATFALR-GIDLTKIESRPSRKKAFEYLFYADFIGH---REDQNVHNALEN 264 (283)
T ss_dssp EEEEECCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTEEEEEEEEESC---TTSHHHHHHHHH
T ss_pred EEEcCCCCchHHHHHHHHHHc-CCCeeEEEeeEcCCCCcceEEEEEEecC---CCcHHHHHHHHH
Confidence 334468899999999999999 899999987776653 466777887654 333556655554
No 48
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.95 E-value=38 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred CChhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 135 MDKASIVGDAVLYVQDLQMKAKKLKTEIADL 165 (293)
Q Consensus 135 ~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l 165 (293)
+.-+.-|.++-+-|..|+.+++.|++++-.|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999999999987654
No 49
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.68 E-value=17 Score=20.99 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
|+.|+++..+|+++...|+-..
T Consensus 2 irrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHH
Confidence 5678888889998888887543
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.07 E-value=27 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 145 VLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 145 i~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
-.|+..|+.+++.|+.++..|...+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777766666665543
No 51
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=42.10 E-value=1.3e+02 Score=24.52 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=28.2
Q ss_pred EeCceEEEEEE-ecCCCChHHHHHHHHHhcCCceEEEEE
Q 042663 207 VEERGFYVRLV-CSKGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 207 v~~~~v~I~I~-c~~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
...+-..|.|. -+.++|.+.+|++.|... |++|.-..
T Consensus 11 ~~~~~~~Itv~~~~~~~G~~a~if~~La~~-~InId~i~ 48 (178)
T 2dtj_A 11 TDKSEAKVTVLGISDKPGEAAKVFRALADA-EINIDMVL 48 (178)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHT-TCCCCEEE
T ss_pred ecCCEEEEEEecCCCCccHHHHHHHHHHHc-CCCEEEEE
Confidence 44556777774 467899999999999999 76665544
No 52
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=41.42 E-value=12 Score=25.98 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 042663 146 LYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
.||..|+.+++.|+..+..|.+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999888776543
No 53
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=38.22 E-value=39 Score=21.19 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
+.+|+.++++|..++..|+..+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV 24 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 4566667776666666665443
No 54
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.99 E-value=61 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
+.+--+||+.|+.+..+|+.-++-|+
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45566888888888887776665544
No 55
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=37.95 E-value=94 Score=25.05 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=29.5
Q ss_pred EeCceEEEEEE-ecCCCChHHHHHHHHHhcCCceEEEEE
Q 042663 207 VEERGFYVRLV-CSKGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 207 v~~~~v~I~I~-c~~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
...+-..|.|. -+.++|.+.+|+++|... |+.|....
T Consensus 21 ~~~~~~~i~v~~~~~~~G~~~~if~~La~~-~Invd~i~ 58 (167)
T 2re1_A 21 FDKNQARINVRGVPDKPGVAYQILGAVADA-NIEVDMII 58 (167)
T ss_dssp EECCCEEEEEEEEECCTTHHHHHHHHHHTT-TCCCCCEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHc-CCeEEEEE
Confidence 34556778887 478899999999999999 78776654
No 56
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.69 E-value=41 Score=24.12 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042663 146 LYVQDLQMKAKKLKTEIA 163 (293)
Q Consensus 146 ~yI~~Lq~~~~~L~~~~~ 163 (293)
.||+.|+.++..|+....
T Consensus 29 ~~i~~LE~~v~~le~~~~ 46 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHS 46 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555544433
No 57
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.36 E-value=37 Score=23.15 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 140 IVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 140 IL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
.|...++-+..|..++++|+++++.|+.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777788888888888888888776654
No 58
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.93 E-value=94 Score=23.61 Aligned_cols=31 Identities=13% Similarity=0.337 Sum_probs=26.4
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042663 138 ASIVGDAVLYVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 138 asIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
..-|.++..-|..|+.++.+++.-+.+++..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4458889999999999999999998888765
No 59
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.74 E-value=34 Score=21.09 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 042663 149 QDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 149 ~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
.+|+.++++|-.++..|+..+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHH
Confidence 356666666666666665543
No 60
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=32.64 E-value=1.5e+02 Score=27.00 Aligned_cols=62 Identities=8% Similarity=0.041 Sum_probs=43.4
Q ss_pred EEEEEec-CCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 213 YVRLVCS-KGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 213 ~I~I~c~-~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
-|-+.-+ .+||.|.++|..|... |+++....+-...+. .-|.|-+.+.++ ++-+.++.++..
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~aL~~ 266 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASR-GVNLSRIESRPTGQYLGHYFFSIDADGH---ATDSRVADALAG 266 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTSEEEEEEEESC---TTSHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHC-CccEEEEEEeecCCCCccEEEEEEEeCC---CCcHHHHHHHHH
Confidence 3444554 6899999999999999 899998887666543 346677777654 333456665554
No 61
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=32.45 E-value=1.9e+02 Score=23.08 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=28.0
Q ss_pred EeCceEEEEEEe-cCCCChHHHHHHHHHhcCCceEEEEE
Q 042663 207 VEERGFYVRLVC-SKGEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 207 v~~~~v~I~I~c-~~r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
...+-..|.|.. +.++|.+.+|+++|.+. |++|.-..
T Consensus 12 ~~~~~a~Itv~g~~~~~G~~a~if~~La~~-~InVd~I~ 49 (167)
T 2dt9_A 12 LDLDHAQIGLIGIPDQPGIAAKVFQALAER-GIAVDMII 49 (167)
T ss_dssp EECSEEEEEEEEEECSTTHHHHHHHHHHHH-TCCCSCEE
T ss_pred EeCCEEEEEEecCCCCCCHHHHHHHHHHHc-CCcEEEEE
Confidence 345566777665 56799999999999999 78776554
No 62
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=32.28 E-value=1.6e+02 Score=26.92 Aligned_cols=73 Identities=8% Similarity=-0.006 Sum_probs=53.0
Q ss_pred eEEEEEEecC-CCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhcCCCcC
Q 042663 211 GFYVRLVCSK-GEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQGFEVL 288 (293)
Q Consensus 211 ~v~I~I~c~~-r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~g~~~~ 288 (293)
...+.+.... +++++.+|...|.+. |+++......+....+.+.|++.+.. .+...++.++.......+.+++
T Consensus 101 ~~~~~llg~~~~~~~~~~i~~~l~~~-~~Ni~~l~~~~~~~~~~~~~~v~~~~----~~~~~l~~~l~~l~~~~~vD~~ 174 (415)
T 3p96_A 101 THTIFVLGRPITAAAFGAVAREVAAL-GVNIDLIRGVSDYPVIGLELRVSVPP----GADEALRTALNRVSSEEHVDVA 174 (415)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHT-TCEEEEEEEEESSSSEEEEEEEECCT----TCHHHHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHHHc-CCCccceeeccCCCceEEEEEeeCCC----CCHHHHHHHHHHHhhhcCcCcc
Confidence 3556666677 799999999999998 89988777655434555566665432 4677888888887777777653
No 63
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=32.25 E-value=2.5e+02 Score=25.69 Aligned_cols=56 Identities=9% Similarity=0.157 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHHHH
Q 042663 220 KGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVTKA 279 (293)
Q Consensus 220 ~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~~a 279 (293)
.+||.|.++|..|... |++.....+-...+. .-|.|-+.+.+. ++-..++.++...
T Consensus 217 ~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~eg~---~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDA-GLNMTSFISRPIKGRTGTYSFIVTLDAA---PWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHT-TCCEEEEEEEEETTEEEEEEEEEEESSC---TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHC-CcceEEEEeeECCCCCccEEEEEEEeCC---cCCHHHHHHHHHH
Confidence 4799999999999999 899999998777765 356777777554 3335666666543
No 64
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=31.74 E-value=59 Score=19.98 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
+.+|+.++++|-.++..|+..+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHH
Confidence 3456666666666666655443
No 65
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.39 E-value=1.6e+02 Score=23.53 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=29.2
Q ss_pred EeCceEEEEEEecC---CCChHHHHHHHHHhcCCceEEEEE
Q 042663 207 VEERGFYVRLVCSK---GEGVAVSLYQALESLTSFSIQNSN 244 (293)
Q Consensus 207 v~~~~v~I~I~c~~---r~gll~~Il~aLe~l~gL~V~sa~ 244 (293)
+..+-..|.|.... .+|++.+++++|.+. |+.|...+
T Consensus 99 ~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~-~InI~~is 138 (167)
T 2re1_A 99 GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEE-GINIQMIS 138 (167)
T ss_dssp EESSEEEEEEECSSCTTCCCHHHHHHHHHHHT-TCCCCEEE
T ss_pred ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHC-CCcEEEEE
Confidence 33455677777764 799999999999999 89998754
No 66
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=30.72 E-value=57 Score=26.53 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccCCC----CCCCChhcHHHHHHHHHHHH
Q 042663 117 KMKEKLYALRALVPN----ITKMDKASIVGDAVLYVQDL 151 (293)
Q Consensus 117 ~in~~~~~LrslvP~----~~K~dKasIL~~Ai~yI~~L 151 (293)
.|.-.|+.|+.++|. ..+.-|-.||..|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 378899999999995 45678999999999988766
No 67
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.71 E-value=62 Score=20.00 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042663 148 VQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~ 168 (293)
+.+|+.++++|-.++.+|+..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~e 23 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 345666666666666655543
No 68
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.52 E-value=63 Score=19.83 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
+.+|+.++++|-.++..|+..+
T Consensus 2 MnQLEdKVEell~~~~~le~EV 23 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHH
Confidence 3566677777666666665443
No 69
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=30.36 E-value=52 Score=18.81 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042663 148 VQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~ 166 (293)
+-+|+.++-+|+-++..|+
T Consensus 2 vyqlkdevgelkgevralk 20 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALK 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHH
Confidence 3444444444444444443
No 70
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=29.62 E-value=1.5e+02 Score=26.31 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=42.8
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhcCCceEEEEEeeeeCCe-EEEEEEEEeecCCcccChHHHHHHHHH
Q 042663 213 YVRLVC---SKGEGVAVSLYQALESLTSFSIQNSNLTTVSEK-FVLTFTSSVRGSDQNMHLTNMKLWVTK 278 (293)
Q Consensus 213 ~I~I~c---~~r~gll~~Il~aLe~l~gL~V~sa~vst~~~~-~~~t~~~kv~~~e~~i~~~~Lk~~i~~ 278 (293)
-|-+.. +.++|.|.++|..|... |+++....+-...+. .-|.|-+.+. + ++-+.++.++..
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~-gINLtkIESRP~~~~~~~Y~FfiD~e-~---~~d~~v~~aL~~ 252 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALF-NINLSWIESRPLKTQLGMYRFFVQAD-S---AITTDIKKVIAI 252 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTT-TCCEEEEEEEECSSSTTCEEEEEEES-C---CSCHHHHHHHHH
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHc-CCCeeEEEEeecCCCCccEEEEEEEe-c---CCcHHHHHHHHH
Confidence 344455 67899999999999999 899999887766643 3456666664 3 333556655544
No 71
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=29.60 E-value=84 Score=18.81 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 042663 147 YVQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 147 yI~~Lq~~~~~L~~~~~~l~~~ 168 (293)
-++.|+.-+++|++++..|+..
T Consensus 7 ~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666543
No 72
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=29.44 E-value=1.8e+02 Score=21.76 Aligned_cols=40 Identities=5% Similarity=0.059 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEEEEEeecC
Q 042663 222 EGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTFTSSVRGS 263 (293)
Q Consensus 222 ~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~~~kv~~~ 263 (293)
.-+++++.+.+. . .++|+.+++..+++..+-.+.+.+.++
T Consensus 35 ~PiIs~l~~~~~-v-~vnIL~g~I~~i~~~~~G~L~v~l~G~ 74 (106)
T 3dhx_A 35 APLLSETARRFN-V-NNNIISAQMDYAGGVKFGIMLTEMHGT 74 (106)
T ss_dssp CCHHHHHHHHSC-C-EEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred hhHHHHHHHHHC-C-CEEEEEEEeEEECCeeEEEEEEEEeCC
Confidence 447777666654 3 388999999999999889999998765
No 73
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.33 E-value=1.8e+02 Score=21.65 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 115 RGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 115 R~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
|.+..+.+..||.-+ ..=|..=+.-|+.|+.++++++..+..|+.
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888888887643 222455566677777777777777776654
No 74
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=27.95 E-value=49 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042663 149 QDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 149 ~~Lq~~~~~L~~~~~~l~~~ 168 (293)
.+|+.++++|..++..|+..
T Consensus 4 nQLE~kVEeLl~~~~~Le~E 23 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENE 23 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHH
Confidence 45566666665555555443
No 75
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.79 E-value=80 Score=19.48 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
+.+|+.++++|-.++..|+..+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 4456666666666666555443
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.66 E-value=65 Score=21.72 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
...|+.+++.|++++++|++..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 77
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=26.64 E-value=1.6e+02 Score=21.84 Aligned_cols=60 Identities=12% Similarity=0.273 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhcCC-ceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 224 VAVSLYQALESLTS-FSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 224 ll~~Il~aLe~l~g-L~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
.+..|.++|.+.+| ..|....+-..|+.++.++++.+...-.-.....+...|..+|.+.
T Consensus 11 ~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~ 71 (107)
T 2zzt_A 11 MYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKR 71 (107)
T ss_dssp HHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677788877753 4677777777777778899998853321123356888888888664
No 78
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=26.57 E-value=1.9e+02 Score=25.25 Aligned_cols=60 Identities=7% Similarity=0.007 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhcCC-ceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 224 VAVSLYQALESLTS-FSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 224 ll~~Il~aLe~l~g-L~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
...+|.+.+++.+| .+|....+-..|...+.++++.+..+-.--+.+.+...++..|.++
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~ 267 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRR 267 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56778888888754 5788888888888778888888864422224568888999888754
No 79
>2ge7_A Nucleocapsid protein; N protein, coronavirus, IBV N protein, dimerization domain, virus/viral protein/RNA binding protein complex; 2.00A {Infectious bronchitis virus} SCOP: d.254.1.2 PDB: 2ge8_A 2ca1_A
Probab=26.49 E-value=26 Score=27.46 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=12.0
Q ss_pred cCCCChHHHHHhhc
Q 042663 20 IDDPNIDQFIDLIQ 33 (293)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (293)
-+||||++|+++|-
T Consensus 83 k~dPn~~~~~~~l~ 96 (108)
T 2ge7_A 83 RDDPQFDNYVKICD 96 (108)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 37999999999874
No 80
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.23 E-value=74 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=13.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHh
Q 042663 103 DRSRALISERRRRGKMKEKLYALR 126 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~Lr 126 (293)
++..+..+=++-|.+-+.....|.
T Consensus 6 Kr~rNr~AA~R~R~KKk~~~~~le 29 (63)
T 1ci6_A 6 KMEQNKTAATRYRQKKRAEQEALT 29 (63)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666555554
No 81
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=25.73 E-value=1.8e+02 Score=20.63 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhc--CC-ceEEEEEeeeeCCeEEEEEEEEeecCCcccChHHHHHHHHHHHhhc
Q 042663 224 VAVSLYQALESL--TS-FSIQNSNLTTVSEKFVLTFTSSVRGSDQNMHLTNMKLWVTKALVNQ 283 (293)
Q Consensus 224 ll~~Il~aLe~l--~g-L~V~sa~vst~~~~~~~t~~~kv~~~e~~i~~~~Lk~~i~~all~~ 283 (293)
.+..|.++|.+. +| .+|....+-..|..++.++++.+...-.-.....+...++.+|.+.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~ 73 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQA 73 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHH
Confidence 456666777665 43 5788888877887888899998854321123357778888877654
No 82
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=25.24 E-value=60 Score=20.07 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 042663 148 VQDLQMKAKKLKTEIADLEAS 168 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~ 168 (293)
+.+|+.++++|-.++..|+..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~e 23 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANA 23 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHH
Confidence 345666666666666655544
No 83
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.23 E-value=87 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042663 139 SIVGDAVLYVQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 139 sIL~~Ai~yI~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
.+|.-+++-+..|+.+++.|+++++.|+...
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888889999999999999999887543
No 84
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=24.15 E-value=41 Score=24.43 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=27.3
Q ss_pred ceeeEEEEeCceEEEEEEecCCCChHHHHHHHHHhc
Q 042663 200 MQMGVFQVEERGFYVRLVCSKGEGVAVSLYQALESL 235 (293)
Q Consensus 200 ~~veV~~v~~~~v~I~I~c~~r~gll~~Il~aLe~l 235 (293)
.+-+|.+-.++++.+-|+|++++-+|.+|=.++++-
T Consensus 10 ~dW~VsRt~dGdYrL~itcpkKe~LLqSIEgmik~a 45 (76)
T 2rp4_A 10 AEWNVSRTPDGDYRLAITCPNKEWLLQSIEGMIKEA 45 (76)
T ss_dssp CCCEEECCTTTBEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccceeeeccCCceEEEEEeCcHHHHHHHHHHHHHHH
Confidence 355666666889999999999987777776666654
No 85
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.00 E-value=1.6e+02 Score=22.05 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred ceEEEEEEec-----C-CCChHHHHHHHHHhcCCceEEEEEeeeeCCeEEEEE
Q 042663 210 RGFYVRLVCS-----K-GEGVAVSLYQALESLTSFSIQNSNLTTVSEKFVLTF 256 (293)
Q Consensus 210 ~~v~I~I~c~-----~-r~gll~~Il~aLe~l~gL~V~sa~vst~~~~~~~t~ 256 (293)
..++|.++.. . .+.++..|++.|..+ | +|+.+.+.. ++.+.+|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~-G-~Vi~vr~~~--d~~fVtF 56 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASF-G-EVILIRFVE--DKMWVTF 56 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT-C-CEEEEEECS--SSEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhC-C-CeEEEEEec--CCEEEEE
Confidence 4566677442 1 245889999999999 9 899988764 5555554
No 86
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.92 E-value=80 Score=17.88 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 042663 139 SIVGDAVLYVQDLQMKAKK 157 (293)
Q Consensus 139 sIL~~Ai~yI~~Lq~~~~~ 157 (293)
+-|-+|-.|+.+|+++++.
T Consensus 4 sgliearkyleqlhrklkn 22 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4577888899988877653
No 87
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.46 E-value=68 Score=19.85 Aligned_cols=22 Identities=14% Similarity=0.400 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 042663 148 VQDLQMKAKKLKTEIADLEASL 169 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~~~ 169 (293)
+.+|+.++++|-.++..|+..+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHH
Confidence 3567777777777666666544
No 88
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.43 E-value=1.2e+02 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 141 VGDAVLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 141 L~~Ai~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
|.+|++--+.|+.+++.|+.++..++
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk 66 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLK 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544443
No 89
>2cjr_A Nucleocapsid protein; oligomerization domain, viral protein; 2.50A {Sars coronavirus} SCOP: d.254.1.2 PDB: 2jw8_A
Probab=22.79 E-value=33 Score=27.64 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=12.0
Q ss_pred cCCCChHHHHHhhc
Q 042663 20 IDDPNIDQFIDLIQ 33 (293)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (293)
-+||||++|+++|-
T Consensus 105 kddP~~~~~l~~l~ 118 (128)
T 2cjr_A 105 DKDPQFKDNVILLN 118 (128)
T ss_dssp TTSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 37999999999873
No 90
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.37 E-value=29 Score=24.46 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 042663 145 VLYVQDLQMKAKKLKTEIADLE 166 (293)
Q Consensus 145 i~yI~~Lq~~~~~L~~~~~~l~ 166 (293)
-.||..|+.++..|+..+..|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3688888888888877665553
No 91
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=21.74 E-value=1.1e+02 Score=18.27 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 042663 148 VQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 148 I~~Lq~~~~~L~~~~~~l~~ 167 (293)
|.-|++++..|+++...|+-
T Consensus 4 iaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776653
No 92
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=20.44 E-value=1.2e+02 Score=25.69 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042663 140 IVGDAVLYVQDLQMKAKKLKTEIADLEA 167 (293)
Q Consensus 140 IL~~Ai~yI~~Lq~~~~~L~~~~~~l~~ 167 (293)
++.-+++-|..||.++..|+++++.|..
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778899999999999999998865
No 93
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.32 E-value=1.9e+02 Score=25.51 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=32.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhccCCCCCCCChhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042663 103 DRSRALISERRRRGKMKEKLYALRALVPNITKMDKASIVGDAVLYVQDLQMKAKKLKTEIADL 165 (293)
Q Consensus 103 ~r~~h~~~ER~RR~~in~~~~~LrslvP~~~K~dKasIL~~Ai~yI~~Lq~~~~~L~~~~~~l 165 (293)
.+......=|.||+++.+++..|..-=|... | |..|++++.+.+.+....
T Consensus 101 ~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~---k----------l~~LeqELvraEae~lva 150 (234)
T 3plt_A 101 NIEASVQPSRDRKEKITDEIAHLKYKDPQST---K----------IPVLEQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCT---H----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCCCCc---h----------HHHHHHHHHHHHHHhhHH
Confidence 3445556678999999999999976656443 2 445666665555554433
Done!