BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042664
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 4/211 (1%)
Query: 6 LEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIG-FEGYA 64
+E+L+ WG INHGI +++VK G +FF+L EEK KYA D A G +GY
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 65 NHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKA 124
+ + N +W D + + PE+++ L WP+ P + + EY + L + KA
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 125 IGLALNLEENCFLDMYG--EEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKE 182
+ + L LE + G EE + N YP CP+P+LA+G++ H D +A T++L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM- 245
Query: 183 VEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213
V GLQ+ + +W +P++ V+++GD +E
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 276
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 140 bits (352), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 115/211 (54%), Gaps = 4/211 (1%)
Query: 6 LEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIG-FEGYA 64
+E+L+ WG INHGI +++VK G +FF+L EEK KYA D A G +GY
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 65 NHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKA 124
+ + N +W D + + PE+++ L WP+ P + + EY + L + KA
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 125 IGLALNLEENCFLDMYG--EEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKE 182
+ + L LE + G EE + N YP CP+P+LA+G++ H D +A T++L +
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM- 244
Query: 183 VEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213
V GLQ+ + +W +P++ V+++GD +E
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLE 275
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 4/211 (1%)
Query: 6 LEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIG-FEGYA 64
+E+L+ WG INHGI ++VK G +FF+L EEK KYA D A G +GY
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 65 NHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKA 124
+ + N +W D + + PE+++ L WP+ P + + EY + L + KA
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 125 IGLALNLEENCFLDMYG--EEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKE 182
+ + L LE + G EE + N YP CP+P+LA+G++ H D +A T++L +
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX- 245
Query: 183 VEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213
V GLQ+ + +W +P++ V ++GD +E
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLE 276
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 10/213 (4%)
Query: 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEG 62
A E ++ +WG F+ +NHGI D V+ + + E++ K + EG
Sbjct: 18 AATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELV-ASKALEG 76
Query: 63 YANHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLL 122
+ E DW +L P + P+ E +R++ ++ ++ KL E LL
Sbjct: 77 -----VQAEVTDXDWESTFFLKHLP--ISNISEVPDLDEEYREVXRDFAKRLEKLAEELL 129
Query: 123 KAIGLALNLEENCFLD-MYGEEATMIAV-YNLYPPCPRPDLAIGLKPHADGTAFTYLLQD 180
+ L LE+ + YG + + YPPCP+PDL GL+ H D L QD
Sbjct: 130 DLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQD 189
Query: 181 KEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213
+V GLQ+LKD QW VP + V+N+GDQ+E
Sbjct: 190 DKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLE 222
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 12/216 (5%)
Query: 7 EKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANH 66
++L + +G ++ ++ A +D + FFALP E K +YA + G GY
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA-GVKGGARGYIPF 82
Query: 67 IINGEEQA--FD----WIDRLYLITGPEDRKQL--KFWPENPESFRKILEEYNAKMVKLN 118
+ + A +D W L G R WP +F+ + +
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 119 EFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLL 178
+L+AI L LE + F + +++ + + YPP P+ + H D T LL
Sbjct: 143 GKVLEAIATYLKLERDFFKPTVQDGNSVLRLLH-YPPIPKDATGVRAGAHGDINTITLLL 201
Query: 179 QDKEVEGLQVL-KDNQWYRVPVIPEAFVINVGDQIE 213
+E GL+VL +D QW + P VIN+GD +E
Sbjct: 202 GAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLE 236
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 92 QLKFWPENPE--SFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAV 149
++ WP+ + F+ E+Y + L+ LLK LAL EEN F + + T+ +V
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 150 YNLYPPCPRPDLAIGLKPHADGTAFTY----------LLQDKEVEGLQVLKDNQWYRVPV 199
+ P P +K ADGT ++ +L V+ LQV + +
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEA 244
Query: 200 IPEAFVINVG 209
++IN G
Sbjct: 245 DDTGYLINCG 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 92 QLKFWPENPE--SFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAV 149
++ WP+ + F+ E+Y + L+ LLK LAL EEN F + + T+ +V
Sbjct: 125 EVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASV 184
Query: 150 YNLYPPCPRPDLAIGLKPHADGTAFTY----------LLQDKEVEGLQVLKDNQWYRVPV 199
+ P P +K ADGT ++ +L V+ LQV + +
Sbjct: 185 VLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEA 244
Query: 200 IPEAFVINVG 209
++IN G
Sbjct: 245 DDTGYLINCG 254
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 99 NPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYN 151
NP SF K + EY K+++ F++++ G + + N F+++Y E + +N
Sbjct: 311 NPSSFNKYIGEYKQKLIRKYRFVVESSG-EVTVNRNKFVELYNELTQIFTEFN 362
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 99 NPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYN 151
NP SF K + EY K+++ F++++ G + + N F+++Y E + +N
Sbjct: 331 NPSSFNKYIGEYKQKLIRKYRFVVESSG-EVTVNRNKFVELYNELTQIFTEFN 382
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 48 EKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKIL 107
+ N++ RD+ FEG + G +AF I L+L G D + +F P S K L
Sbjct: 174 DSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFL-QGAYDTVRWEFGTCQPLSDEKDL 232
Query: 108 EEYNAKMVKLNEFLLKAI 125
+ M N F + A+
Sbjct: 233 TQL--FMFARNAFTVLAM 248
>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3UOG|B Chain B, Crystal Structure Of Putative Alcohol Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 363
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 31 LDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYLITG 86
L KA G + + + + K R A+G A+H IN E+ DW++R+Y +TG
Sbjct: 206 LQIAKATGAEVI-VTSSSREKLDRAFALG----ADHGINRLEE--DWVERVYALTG 254
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 129 LNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKE 182
L L +NC+ + ++A Y L PP P P +A + H D Y KE
Sbjct: 280 LKLLKNCYAALPDHGKVIVAEYIL-PPSPDPSIATKVVIHTDALMLAYNPGGKE 332
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 48 EKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKIL 107
+ N++ RD+ FEG + G +AF I L+L G D + +F P S K L
Sbjct: 171 DSNQFFRDVTADFEGQSPKCTQGVREAFRQIKDLFL-QGAYDTVRWEFGTCQPLSDEKDL 229
Query: 108 EE 109
+
Sbjct: 230 TQ 231
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 15 SWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQA 74
SW A++ E K VGR +F E +++ A G +GY ++ING QA
Sbjct: 89 SWYLSWALDSTSEEREKGKTVEVGRAYFET---EHRRFSLLDAPGHKGYVTNMINGASQA 145
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 21 AINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIIN 69
+ N GI+ +F +++ GR F LPA + A++ +G H +N
Sbjct: 258 SYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHTVN 306
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 162 AIGLKPHADGTAFTYLLQDKEVEGLQV-LKDNQWYRVPVIPEAFVINVGDQIE 213
AI H D T L E GLQV KD W VP +IN+GD ++
Sbjct: 168 AIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQ 219
>pdb|1EW2|A Chain A, Crystal Structure Of A Human Phosphatase
Length = 513
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 39 RQFFALPAEEKNKYARDIAIGFEGYANHIING-EEQAF 75
RQ A+P +E+ D+A+ G H+++G +EQ F
Sbjct: 420 RQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTF 457
>pdb|1ZED|A Chain A, Alkaline Phosphatase From Human Placenta In Complex With
P- Nitrophenyl-Phosphonate
Length = 484
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 39 RQFFALPAEEKNKYARDIAIGFEGYANHIING-EEQAF 75
RQ A+P +E+ D+A+ G H+++G +EQ F
Sbjct: 420 RQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTF 457
>pdb|3MK0|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK1|A Chain A, Refinement Of Placental Alkaline Phosphatase Complexed
With Nitrophenyl
pdb|3MK2|A Chain A, Placental Alkaline Phosphatase Complexed With Phe
pdb|2GLQ|A Chain A, X-Ray Structure Of Human Alkaline Phosphatase In Complex
With Strontium
pdb|1ZEF|A Chain A, Structure Of Alkaline Phosphatase From Human Placenta In
Complex With Its Uncompetitive Inhibitor L-Phe
pdb|1ZEB|A Chain A, X-ray Structure Of Alkaline Phosphatase From Human
Placenta In Complex With 5'-amp
Length = 484
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 39 RQFFALPAEEKNKYARDIAIGFEGYANHIING-EEQAF 75
RQ A+P +E+ D+A+ G H+++G +EQ F
Sbjct: 420 RQQSAVPLDEETHAGEDVAVFARGPQAHLVHGVQEQTF 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,771,652
Number of Sequences: 62578
Number of extensions: 284779
Number of successful extensions: 898
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 33
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)