Query 042664
Match_columns 213
No_of_seqs 119 out of 1057
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 1.1E-58 2.3E-63 384.2 21.7 210 3-213 68-277 (357)
2 PLN02758 oxidoreductase, 2OG-F 100.0 6.2E-58 1.3E-62 380.1 21.2 208 4-213 71-279 (361)
3 PLN02254 gibberellin 3-beta-di 100.0 8.7E-58 1.9E-62 378.3 19.9 209 2-213 64-277 (358)
4 COG3491 PcbC Isopenicillin N s 100.0 1.4E-57 3E-62 357.4 19.8 208 3-213 23-241 (322)
5 PLN00417 oxidoreductase, 2OG-F 100.0 4.7E-57 1E-61 373.2 21.7 209 4-213 62-270 (348)
6 PLN02276 gibberellin 20-oxidas 100.0 1E-56 2.2E-61 373.1 20.5 207 4-213 59-272 (361)
7 PLN02515 naringenin,2-oxogluta 100.0 2E-56 4.3E-61 370.2 20.7 208 3-213 54-263 (358)
8 PLN02997 flavonol synthase 100.0 2.6E-56 5.7E-61 365.4 21.2 205 3-213 44-249 (325)
9 PLN02485 oxidoreductase 100.0 2.7E-56 5.9E-61 367.4 21.4 210 4-213 33-256 (329)
10 PLN03178 leucoanthocyanidin di 100.0 3E-56 6.5E-61 370.4 21.4 210 3-213 65-277 (360)
11 PLN02947 oxidoreductase 100.0 7.5E-56 1.6E-60 368.4 22.1 208 3-213 81-291 (374)
12 PLN02393 leucoanthocyanidin di 100.0 8.5E-56 1.8E-60 367.7 21.8 210 3-213 69-280 (362)
13 KOG0143 Iron/ascorbate family 100.0 1.5E-55 3.3E-60 359.6 22.3 210 3-213 34-244 (322)
14 PLN02912 oxidoreductase, 2OG-F 100.0 1.2E-55 2.7E-60 364.7 20.8 207 3-213 56-263 (348)
15 PTZ00273 oxidase reductase; Pr 100.0 1.4E-55 2.9E-60 362.2 20.4 209 3-213 23-245 (320)
16 PLN02750 oxidoreductase, 2OG-F 100.0 2.9E-55 6.3E-60 362.9 20.5 206 3-213 41-261 (345)
17 PLN02704 flavonol synthase 100.0 2.6E-55 5.7E-60 361.8 19.6 210 3-213 54-265 (335)
18 PLN02639 oxidoreductase, 2OG-F 100.0 5.3E-55 1.1E-59 360.3 21.1 208 3-213 49-257 (337)
19 PLN03002 oxidoreductase, 2OG-F 100.0 5.6E-55 1.2E-59 359.2 19.6 208 3-213 26-254 (332)
20 PLN02904 oxidoreductase 100.0 9.8E-55 2.1E-59 360.3 21.0 207 3-213 67-274 (357)
21 PLN02299 1-aminocyclopropane-1 100.0 2.2E-54 4.7E-59 353.8 21.1 203 3-213 21-225 (321)
22 PLN02156 gibberellin 2-beta-di 100.0 2.2E-53 4.7E-58 348.9 20.8 206 3-213 35-247 (335)
23 PLN02984 oxidoreductase, 2OG-F 100.0 6.3E-53 1.4E-57 347.0 20.8 205 5-213 48-266 (341)
24 PLN02403 aminocyclopropanecarb 100.0 2.1E-52 4.5E-57 339.1 20.8 202 3-213 17-221 (303)
25 PLN02365 2-oxoglutarate-depend 100.0 1.1E-50 2.3E-55 329.8 19.7 196 5-213 17-218 (300)
26 PLN03001 oxidoreductase, 2OG-F 100.0 6.1E-46 1.3E-50 295.6 15.7 177 35-213 2-182 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 4E-23 8.6E-28 145.9 7.2 96 2-99 13-116 (116)
28 PLN03176 flavanone-3-hydroxyla 99.7 7.5E-17 1.6E-21 113.8 7.5 62 4-66 55-116 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.6 5.5E-16 1.2E-20 106.0 3.7 64 146-213 2-67 (98)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 90.5 0.35 7.7E-06 32.4 3.3 56 148-209 1-76 (100)
31 smart00702 P4Hc Prolyl 4-hydro 87.1 6.5 0.00014 29.3 8.5 80 117-208 60-152 (178)
32 PRK05467 Fe(II)-dependent oxyg 81.3 17 0.00037 28.6 8.6 28 183-211 129-157 (226)
33 TIGR00568 alkb DNA alkylation 78.2 26 0.00056 26.2 8.7 59 146-211 95-162 (169)
34 PF13532 2OG-FeII_Oxy_2: 2OG-F 72.0 13 0.00028 27.9 5.7 58 146-211 97-164 (194)
35 PF03668 ATP_bind_2: P-loop AT 65.0 12 0.00026 30.5 4.3 31 7-39 15-45 (284)
36 PRK15401 alpha-ketoglutarate-d 64.6 66 0.0014 25.1 8.8 56 147-211 117-183 (213)
37 COG2140 Thermophilic glucose-6 60.8 29 0.00062 26.9 5.4 63 143-211 87-152 (209)
38 PRK05874 L-fuculose-phosphate 56.9 13 0.00027 29.1 3.1 25 2-26 138-162 (217)
39 PF11243 DUF3045: Protein of u 53.7 12 0.00026 24.0 1.9 21 7-27 36-56 (89)
40 PF06820 Phage_fiber_C: Putati 52.9 15 0.00033 22.1 2.2 36 163-199 16-62 (64)
41 PRK08130 putative aldolase; Va 49.5 20 0.00044 27.7 3.2 25 2-26 138-162 (213)
42 PF01471 PG_binding_1: Putativ 49.4 22 0.00048 20.8 2.7 42 4-45 3-44 (57)
43 PF00356 LacI: Bacterial regul 49.0 16 0.00035 20.8 1.9 18 2-19 27-44 (46)
44 COG1660 Predicted P-loop-conta 47.2 28 0.00061 28.1 3.6 29 9-39 17-45 (286)
45 PF08823 PG_binding_2: Putativ 47.1 31 0.00068 21.9 3.2 35 2-36 14-48 (74)
46 TIGR02409 carnitine_bodg gamma 45.0 50 0.0011 27.9 5.1 39 2-43 121-159 (366)
47 PRK06833 L-fuculose phosphate 44.0 27 0.00058 27.1 3.1 25 2-26 135-159 (214)
48 PF12791 RsgI_N: Anti-sigma fa 43.5 14 0.0003 21.8 1.1 18 191-211 14-31 (56)
49 PRK09553 tauD taurine dioxygen 43.0 52 0.0011 26.5 4.7 40 2-44 26-65 (277)
50 PF03460 NIR_SIR_ferr: Nitrite 42.6 39 0.00085 20.6 3.2 38 2-39 22-67 (69)
51 PF11771 DUF3314: Protein of u 42.2 50 0.0011 24.0 3.9 42 161-202 70-123 (164)
52 PF02668 TauD: Taurine catabol 39.6 57 0.0012 25.4 4.4 30 4-33 24-53 (258)
53 TIGR02410 carnitine_TMLD trime 38.7 64 0.0014 27.2 4.8 38 3-43 114-151 (362)
54 PRK15331 chaperone protein Sic 38.6 33 0.00071 25.6 2.6 42 2-44 9-50 (165)
55 PF06560 GPI: Glucose-6-phosph 38.2 67 0.0014 24.4 4.3 38 172-211 92-136 (182)
56 TIGR02624 rhamnu_1P_ald rhamnu 37.7 44 0.00096 27.0 3.5 25 2-26 188-212 (270)
57 PRK06661 hypothetical protein; 37.7 33 0.00072 26.9 2.7 24 3-26 137-160 (231)
58 KOG2107 Uncharacterized conser 37.1 40 0.00086 25.1 2.8 27 182-208 102-129 (179)
59 PRK03634 rhamnulose-1-phosphat 36.9 46 0.00099 27.0 3.5 25 2-26 190-214 (274)
60 PRK06754 mtnB methylthioribulo 36.7 36 0.00079 26.2 2.8 24 3-26 148-172 (208)
61 PRK06486 hypothetical protein; 36.5 36 0.00078 27.4 2.8 25 2-26 161-185 (262)
62 smart00460 TGc Transglutaminas 35.6 35 0.00075 20.5 2.1 17 185-201 52-68 (68)
63 PRK06208 hypothetical protein; 35.5 38 0.00082 27.5 2.8 25 2-26 176-200 (274)
64 PRK08087 L-fuculose phosphate 35.1 50 0.0011 25.5 3.4 25 2-26 133-157 (215)
65 TIGR00370 conserved hypothetic 34.7 1.5E+02 0.0033 22.8 5.9 47 160-212 151-199 (202)
66 PF11548 Receptor_IA-2: Protei 34.4 20 0.00043 23.8 0.9 36 117-152 18-53 (91)
67 COG4875 Uncharacterized protei 34.3 1.6E+02 0.0035 20.8 5.3 37 162-200 105-148 (156)
68 TIGR01086 fucA L-fuculose phos 32.7 45 0.00097 25.8 2.7 25 2-26 132-156 (214)
69 PRK07490 hypothetical protein; 31.5 49 0.0011 26.3 2.8 25 2-26 145-169 (245)
70 PLN00052 prolyl 4-hydroxylase; 30.9 3.1E+02 0.0067 22.7 8.8 13 195-207 206-218 (310)
71 cd00379 Ribosomal_L10_P0 Ribos 29.4 1.9E+02 0.0042 20.6 5.5 37 3-39 4-41 (155)
72 PRK06357 hypothetical protein; 27.6 76 0.0017 24.6 3.2 25 2-26 141-171 (216)
73 PF00046 Homeobox: Homeobox do 27.6 66 0.0014 18.6 2.3 39 102-140 10-48 (57)
74 COG1861 SpsF Spore coat polysa 27.4 1E+02 0.0022 24.3 3.8 39 2-42 53-91 (241)
75 PF01361 Tautomerase: Tautomer 27.4 86 0.0019 18.4 2.8 24 112-135 14-37 (60)
76 PRK01964 4-oxalocrotonate taut 26.9 93 0.002 18.6 2.9 25 112-136 15-39 (64)
77 PRK06557 L-ribulose-5-phosphat 26.8 66 0.0014 24.9 2.8 25 2-26 141-167 (221)
78 COG3100 Uncharacterized protei 26.5 2E+02 0.0044 19.2 4.6 32 4-36 65-96 (103)
79 PF13309 HTH_22: HTH domain 26.3 56 0.0012 20.0 1.8 22 2-23 22-43 (64)
80 PF13709 DUF4159: Domain of un 26.1 1.3E+02 0.0029 23.2 4.3 45 2-46 68-113 (207)
81 TIGR01573 cas2 CRISPR-associat 26.0 1.4E+02 0.003 19.8 3.9 39 4-42 16-59 (95)
82 PF12368 DUF3650: Protein of u 25.9 34 0.00074 17.3 0.7 17 19-35 9-25 (28)
83 PF04748 Polysacc_deac_2: Dive 25.9 91 0.002 24.2 3.4 27 2-28 104-130 (213)
84 PF11848 DUF3368: Domain of un 25.8 1.4E+02 0.0029 17.0 3.3 28 5-38 20-47 (48)
85 PRK02220 4-oxalocrotonate taut 25.3 1E+02 0.0023 18.1 2.9 23 113-135 16-38 (61)
86 PRK00745 4-oxalocrotonate taut 25.0 1.1E+02 0.0024 18.0 3.1 25 112-136 15-39 (62)
87 TIGR00036 dapB dihydrodipicoli 25.0 1.2E+02 0.0026 24.3 4.0 38 3-40 104-143 (266)
88 TIGR01565 homeo_ZF_HD homeobox 24.7 68 0.0015 19.3 1.9 34 104-137 13-50 (58)
89 PF11876 DUF3396: Protein of u 23.8 21 0.00047 27.6 -0.5 43 169-211 105-152 (208)
90 cd00491 4Oxalocrotonate_Tautom 23.7 1E+02 0.0022 17.8 2.6 24 112-135 14-37 (58)
91 PRK02289 4-oxalocrotonate taut 23.6 93 0.002 18.5 2.5 25 112-136 15-39 (60)
92 TIGR01873 cas_CT1978 CRISPR-as 23.1 1.5E+02 0.0033 19.5 3.5 30 169-198 50-81 (87)
93 smart00153 VHP Villin headpiec 23.0 70 0.0015 17.2 1.6 27 26-52 2-29 (36)
94 PF11043 DUF2856: Protein of u 22.8 1.3E+02 0.0027 19.5 2.9 23 29-51 21-43 (97)
95 KOG1602 Cis-prenyltransferase 22.7 1.7E+02 0.0037 23.6 4.3 50 4-53 67-123 (271)
96 COG0289 DapB Dihydrodipicolina 22.7 1.8E+02 0.0039 23.5 4.5 39 2-40 78-117 (266)
97 KOG4175 Tryptophan synthase al 22.1 2.2E+02 0.0048 22.2 4.6 40 3-42 134-175 (268)
98 PRK11558 putative ssRNA endonu 22.0 2.1E+02 0.0046 19.3 4.0 33 166-198 48-82 (97)
99 PRK07044 aldolase II superfami 21.5 94 0.002 24.7 2.8 25 2-26 150-174 (252)
100 PF13376 OmdA: Bacteriocin-pro 21.5 1.4E+02 0.0029 18.0 2.9 30 24-53 4-36 (63)
101 cd05796 Ribosomal_P0_like Ribo 21.5 2.5E+02 0.0055 20.6 4.9 38 3-40 4-42 (163)
102 COG1402 Uncharacterized protei 21.5 2.7E+02 0.0058 22.3 5.2 40 4-43 90-132 (250)
103 TIGR00013 taut 4-oxalocrotonat 21.2 1.5E+02 0.0032 17.5 3.1 24 112-135 15-38 (63)
104 PF05338 DUF717: Protein of un 20.7 84 0.0018 18.8 1.7 17 35-51 7-23 (55)
105 smart00759 Flu_M1_C Influenza 20.7 1.4E+02 0.0029 19.6 2.8 37 3-39 49-85 (95)
106 cd05797 Ribosomal_L10 Ribosoma 20.6 3.4E+02 0.0073 19.6 5.5 37 3-39 6-43 (157)
107 KOG4513 Phosphoglycerate mutas 20.3 99 0.0021 26.5 2.6 26 3-28 435-462 (531)
108 PF09707 Cas_Cas2CT1978: CRISP 20.3 1.7E+02 0.0037 19.2 3.3 33 166-198 46-80 (86)
109 PF01381 HTH_3: Helix-turn-hel 20.2 31 0.00067 19.8 -0.2 20 116-135 35-54 (55)
110 PF08066 PMC2NT: PMC2NT (NUC01 20.2 1.4E+02 0.0031 19.5 3.0 29 101-129 24-52 (91)
111 PF02037 SAP: SAP domain; Int 20.1 1.4E+02 0.0031 15.6 2.5 28 6-36 6-33 (35)
112 PF10509 GalKase_gal_bdg: Gala 20.1 55 0.0012 19.2 0.9 15 164-178 24-38 (52)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=1.1e-58 Score=384.16 Aligned_cols=210 Identities=39% Similarity=0.732 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++..... .++||+........+..||+|.+.
T Consensus 68 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~-~~~Gy~~~~~~~~~~~~d~~e~~~ 146 (357)
T PLN02216 68 DSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPG-EIEGFGQAFVVSEDQKLDWADMFF 146 (357)
T ss_pred HHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCC-CccccCccccccccccCCceeeee
Confidence 4689999999999999999999999999999999999999999999999966544 578997665444456789999998
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCc
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLA 162 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~ 162 (213)
+...|.....+|.||+.++.||+++++|++.|.+++.+|+++|+++||+++++|.+.+.....+.||++|||||+.++..
T Consensus 147 ~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~ 226 (357)
T PLN02216 147 LTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQV 226 (357)
T ss_pred eeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccc
Confidence 87666555678899998999999999999999999999999999999999999998884335679999999999988889
Q ss_pred cccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 163 IGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 163 ~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|+++|||+|+||||+|+++++||||+.+|+|++|+|.||++||||||+||
T Consensus 227 ~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~ 277 (357)
T PLN02216 227 IGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNALVVNVGDILE 277 (357)
T ss_pred cCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeEEEEcchhhH
Confidence 999999999999999995479999999999999999999999999999996
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.2e-58 Score=380.14 Aligned_cols=208 Identities=44% Similarity=0.792 Sum_probs=188.6
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhhc
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYL 83 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~ 83 (213)
+++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++...+. ..+||+...........||+|.+.+
T Consensus 71 ~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~-~~~GY~~~~~~~~~~~~d~~e~~~~ 149 (361)
T PLN02758 71 SEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPG-TVQGYGQAFVFSEDQKLDWCNMFAL 149 (361)
T ss_pred HHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCC-CccccCcccccccccccCeeEEEEe
Confidence 468999999999999999999999999999999999999999999999976554 5799976554444566799999988
Q ss_pred cCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCcc
Q 042664 84 ITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAI 163 (213)
Q Consensus 84 ~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~ 163 (213)
+..|.....+|.||+.++.||+.+++|+++|.+++..|+++|+++||+++++|.+.+ ..+.+.||++|||+|+.++..+
T Consensus 150 ~~~p~~~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lR~~~YP~~~~~~~~~ 228 (361)
T PLN02758 150 GVEPHFIRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMF-GEAVQAVRMNYYPPCSRPDLVL 228 (361)
T ss_pred eccCccccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHh-cCccceeeeecCCCCCCccccc
Confidence 876655556899999899999999999999999999999999999999999999888 5677899999999999888899
Q ss_pred ccCCccCCCceEEEeeCC-CCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 164 GLKPHADGTAFTYLLQDK-EVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 164 ~~~~HtD~~~lTll~q~~-~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
|+++|||+|+||||+|++ +++||||+.+|+|++|+|.||++|||+||+||
T Consensus 229 g~~~HtD~g~lTlL~qd~~~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~ 279 (361)
T PLN02758 229 GLSPHSDGSALTVLQQGKGSCVGLQILKDNTWVPVHPVPNALVINIGDTLE 279 (361)
T ss_pred CccCccCCceeEEEEeCCCCCCCeeeeeCCEEEeCCCCCCeEEEEccchhh
Confidence 999999999999999973 48899999999999999999999999999996
No 3
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=8.7e-58 Score=378.30 Aligned_cols=209 Identities=33% Similarity=0.594 Sum_probs=186.0
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhh
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRL 81 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~ 81 (213)
+.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++..... .++||+.........+.+|+|.|
T Consensus 64 ~~~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~-~~~Gy~~~~~~~~~~~~~w~e~~ 142 (358)
T PLN02254 64 DPNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPD-GVSGYGVARISSFFNKKMWSEGF 142 (358)
T ss_pred CHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCC-CcccccccccccccCCCCceeeE
Confidence 34678999999999999999999999999999999999999999999999976554 57899876555445668999999
Q ss_pred hccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhC----CCCccceEeeecCCCC
Q 042664 82 YLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYG----EEATMIAVYNLYPPCP 157 (213)
Q Consensus 82 ~~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~----~~~~~~lr~~~Yp~~~ 157 (213)
.+...|.. ...|.||+.+++||+++++|+++|.+++.+|+++|+++||+++++|...+. +.+.+.||++|||||+
T Consensus 143 ~~~~~p~~-~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p 221 (358)
T PLN02254 143 TIMGSPLE-HARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCP 221 (358)
T ss_pred EeecCccc-cchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCC
Confidence 88655532 246889999999999999999999999999999999999999988876652 3566899999999999
Q ss_pred CCCCccccCCccCCCceEEEeeCCCCCceeEeeCC-ceEEccCCCCcEEEecCccCC
Q 042664 158 RPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLKDN-QWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 158 ~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g-~W~~v~~~~~~~iVn~Gd~le 213 (213)
.++..+|+++|||+|+||||+|| .++||||+.+| +|++|+|.||++|||+||+||
T Consensus 222 ~~~~~~G~~~HtD~g~lTiL~Qd-~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq 277 (358)
T PLN02254 222 DPDRAMGLAPHTDSSLLTILYQS-NTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLH 277 (358)
T ss_pred CcccccCcCCccCCCcEEEEecC-CCCCceEECCCCEEEEcccCCCCEEEEhHHHHH
Confidence 98889999999999999999998 89999999865 899999999999999999986
No 4
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=1.4e-57 Score=357.36 Aligned_cols=208 Identities=32% Similarity=0.498 Sum_probs=193.8
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
..++++|++||+++|||||+||||+.++++++++++++||+||.|+|.++.....+.++||.+...+...+..||+|.++
T Consensus 23 ~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rGY~~~~~E~t~g~~d~kE~~d 102 (322)
T COG3491 23 RRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRGYTPHGGELTDGEPDYKEGLD 102 (322)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccccccCcccccCCccchhhhcc
Confidence 46889999999999999999999999999999999999999999999999886655799999998888888889999999
Q ss_pred ccCCCC----------ccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeee
Q 042664 83 LITGPE----------DRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNL 152 (213)
Q Consensus 83 ~~~~p~----------~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~ 152 (213)
++..-. ...++|.|| ..|+||+.+..|++.|.+++.+||++||++|++++++|.+.+ +++.++||+++
T Consensus 103 ~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~d~Fd~~~-~d~~~~~RLlr 180 (322)
T COG3491 103 MGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKRT-SDPNSVLRLLR 180 (322)
T ss_pred cccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcc-CCchheEEEEe
Confidence 976411 234789999 999999999999999999999999999999999999999996 89999999999
Q ss_pred cCCCCCCCCccccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 153 YPPCPRPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 153 Yp~~~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
||+.+..++.-+.|+|||+|+||||+|| .++||||+. +|+|++|+|+||+++||+||+||
T Consensus 181 YP~~~~~~~~~~~GaHtD~G~lTLl~Qd-~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe 241 (322)
T COG3491 181 YPSRPAREGADGVGAHTDYGLLTLLFQD-DVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLE 241 (322)
T ss_pred cCCCcccccccccccccCCCeEEEEEec-ccCCeEEecCCCCeeECCCCCCeEEEeHHHHHH
Confidence 9999998888889999999999999999 899999999 59999999999999999999986
No 5
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.7e-57 Score=373.19 Aligned_cols=209 Identities=59% Similarity=1.076 Sum_probs=184.1
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhhc
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYL 83 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~ 83 (213)
+++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++..... .++||+...........||+|.+.+
T Consensus 62 ~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~GY~~~~~~~~~~~~d~~e~~~~ 140 (348)
T PLN00417 62 EELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIG-SIQGYGNDMILSDDQVLDWIDRLYL 140 (348)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCC-CccccccccccccCCCcCccceeec
Confidence 467899999999999999999999999999999999999999999999976544 5789976533223456788888776
Q ss_pred cCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCcc
Q 042664 84 ITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAI 163 (213)
Q Consensus 84 ~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~ 163 (213)
...|......|.||+.+++||+.+++|+.+|.+++.+|+++|+++||+++++|.+.+.....+.||++||||++.++..+
T Consensus 141 ~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~ 220 (348)
T PLN00417 141 TTYPEDQRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVI 220 (348)
T ss_pred ccCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCccccc
Confidence 65554444568999988999999999999999999999999999999999999988854445689999999999888889
Q ss_pred ccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 164 GLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 164 ~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
|+++|||+|+||||+|++.++||||+.+|+|++|+|.||++||||||+||
T Consensus 221 g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~Le 270 (348)
T PLN00417 221 GVKPHADGSAFTLLLPDKDVEGLQFLKDGKWYKAPIVPDTILINVGDQME 270 (348)
T ss_pred CCcCccCCCceEEEEecCCCCceeEeECCeEEECCCCCCcEEEEcChHHH
Confidence 99999999999999996369999999999999999999999999999986
No 6
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=1e-56 Score=373.11 Aligned_cols=207 Identities=30% Similarity=0.541 Sum_probs=185.4
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhhc
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYL 83 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~ 83 (213)
+++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++..... ..+||.+...+......||+|.|.+
T Consensus 59 ~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~-~~~GY~~~~~~~~~~~~d~~E~~~~ 137 (361)
T PLN02276 59 EAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPG-ESCGYASSHTGRFSSKLPWKETLSF 137 (361)
T ss_pred HHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCC-CccccCccCccccCCCCCeeeeEEE
Confidence 478899999999999999999999999999999999999999999999876544 5789987765555556799999998
Q ss_pred cCCCCc-------cccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCC
Q 042664 84 ITGPED-------RKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPC 156 (213)
Q Consensus 84 ~~~p~~-------~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~ 156 (213)
+..+.. ...+|.||...++|++.+++|+..|.+++..|+++|+++||+++++|.+.+ ..+.+.||++|||++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~ 216 (361)
T PLN02276 138 GYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKFF-EDGDSIMRCNYYPPC 216 (361)
T ss_pred eccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCccceeeeEeCCCC
Confidence 754321 123467887778999999999999999999999999999999999999888 567799999999999
Q ss_pred CCCCCccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 157 PRPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 157 ~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+.++..+|+++|||+|+||||+|| .++||||+.+|+|++|+|.||++|||+||+||
T Consensus 217 ~~~~~~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~ 272 (361)
T PLN02276 217 QEPELTLGTGPHCDPTSLTILHQD-QVGGLQVFVDNKWRSVRPRPGALVVNIGDTFM 272 (361)
T ss_pred CCcccccCCccccCCceeEEEEec-CCCceEEEECCEEEEcCCCCCeEEEEcHHHHH
Confidence 988888999999999999999998 89999999999999999999999999999985
No 7
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=2e-56 Score=370.18 Aligned_cols=208 Identities=33% Similarity=0.620 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++..... ..+||............||+|.+.
T Consensus 54 ~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~-~~~Gy~~~~~~~~~~~~d~kE~~~ 132 (358)
T PLN02515 54 GEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGG-KKGGFIVSSHLQGEAVQDWREIVT 132 (358)
T ss_pred HHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCC-CccCcccccccccccccCceeeec
Confidence 4578999999999999999999999999999999999999999999999866544 358986432222344579999987
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCc
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLA 162 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~ 162 (213)
+...|......|.||+.++.||+++++|++.|.+++..|+++|+++||+++++|.+.+ ....+.+|++|||+++.++..
T Consensus 133 ~~~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~ 211 (358)
T PLN02515 133 YFSYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKAC-VDMDQKVVVNYYPKCPQPDLT 211 (358)
T ss_pred cccCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhh-cCccceEEEeecCCCCChhhc
Confidence 6544443445689999899999999999999999999999999999999999999888 456688999999999988889
Q ss_pred cccCCccCCCceEEEeeCCCCCceeEeeC-C-ceEEccCCCCcEEEecCccCC
Q 042664 163 IGLKPHADGTAFTYLLQDKEVEGLQVLKD-N-QWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 163 ~~~~~HtD~~~lTll~q~~~~~GLqv~~~-g-~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|+++|||+|+||||+|| +++||||+.+ | +|++|+|.||++|||+||+||
T Consensus 212 ~G~~~HTD~g~lTlL~Qd-~v~GLQV~~~~~~~Wi~Vpp~pgalVVNiGD~L~ 263 (358)
T PLN02515 212 LGLKRHTDPGTITLLLQD-QVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGH 263 (358)
T ss_pred cCCCCCCCCCeEEEEecC-CCCceEEEECCCCeEEECCCCCCeEEEEccHHHH
Confidence 999999999999999998 8999999884 3 799999999999999999986
No 8
>PLN02997 flavonol synthase
Probab=100.00 E-value=2.6e-56 Score=365.36 Aligned_cols=205 Identities=34% Similarity=0.656 Sum_probs=180.9
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... .++||..... .+..+|+|.+.
T Consensus 44 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~--~~~GY~~~~~---~~~~d~~e~~~ 118 (325)
T PLN02997 44 DFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEE--DFEGYKRNYL---GGINNWDEHLF 118 (325)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCC--CccccCcccc---cCCCCccceeE
Confidence 468999999999999999999999999999999999999999999999986543 4789976532 34568888765
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCC-CccceEeeecCCCCCCCC
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEE-ATMIAVYNLYPPCPRPDL 161 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~-~~~~lr~~~Yp~~~~~~~ 161 (213)
....|......|.||+.+|+||+++++|++.|.+++.+|+++|+++||+++++|.+.+... ..+.||++||||++.++.
T Consensus 119 ~~~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~ 198 (325)
T PLN02997 119 HRLSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGETAEYVLRVNFYPPTQDTEL 198 (325)
T ss_pred eeecCccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCcccceeeeecCCCCCCccc
Confidence 4433443345688999899999999999999999999999999999999999999888422 346899999999998888
Q ss_pred ccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 162 AIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 162 ~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
.+|+++|||+|+||||+|| +++||||+.+|+|++|+|.||++|||+||+||
T Consensus 199 ~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le 249 (325)
T PLN02997 199 VIGAAAHSDMGAIALLIPN-EVPGLQAFKDEQWLDLNYINSAVVVIIGDQLM 249 (325)
T ss_pred ccCccCccCCCceEEEecC-CCCCEEEeECCcEEECCCCCCeEEEEechHHH
Confidence 8999999999999999998 89999999999999999999999999999986
No 9
>PLN02485 oxidoreductase
Probab=100.00 E-value=2.7e-56 Score=367.45 Aligned_cols=210 Identities=29% Similarity=0.451 Sum_probs=183.4
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhhc
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYL 83 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~ 83 (213)
+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.......++||.+.+.....+..|++|.+.+
T Consensus 33 ~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~ 112 (329)
T PLN02485 33 EVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMTPAAGYRGYQRIGENVTKGKPDMHEAIDC 112 (329)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhcccCCCCCCCcccccccccCCCCCcchhhhh
Confidence 47999999999999999999999999999999999999999999999986644435799987665544566799998887
Q ss_pred cCC--CC-------ccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecC
Q 042664 84 ITG--PE-------DRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYP 154 (213)
Q Consensus 84 ~~~--p~-------~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp 154 (213)
... +. ....+|.||+.++.||+.+++|++.|.+++..|+++|+++||+++++|.+.+...+.+.||++|||
T Consensus 113 ~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP 192 (329)
T PLN02485 113 YREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIALALGGSPDEFEGKMAGDPFWVMRIIGYP 192 (329)
T ss_pred cccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhhhhccCccceEEEEeCC
Confidence 642 11 123579999989999999999999999999999999999999999988876544567899999999
Q ss_pred CCCC----CCCccccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 155 PCPR----PDLAIGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 155 ~~~~----~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+++. ++..+|+++|||+|+||||+|++.++||||+. +|+|++|+|.||++|||+||+||
T Consensus 193 ~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~pg~~vVNiGD~L~ 256 (329)
T PLN02485 193 GVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPIPGTFVCNIGDMLK 256 (329)
T ss_pred CCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCCCCcEEEEhHHHHH
Confidence 9986 34689999999999999999974589999997 89999999999999999999985
No 10
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=3e-56 Score=370.43 Aligned_cols=210 Identities=34% Similarity=0.704 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccc-CCcccccccccccCCCccCChhHhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDI-AIGFEGYANHIINGEEQAFDWIDRL 81 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~ 81 (213)
++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ...++||+........+..||+|.+
T Consensus 65 ~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~ 144 (360)
T PLN03178 65 EACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYF 144 (360)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhh
Confidence 468899999999999999999999999999999999999999999999997643 2257899765444445567898887
Q ss_pred hccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCC--CCccceEeeecCCCCCC
Q 042664 82 YLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGE--EATMIAVYNLYPPCPRP 159 (213)
Q Consensus 82 ~~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~ 159 (213)
.....|.....+|.||+.+|+||+.+++|++.|.+++.+|+++|+++||+++++|.+.+.. .+.+.||++|||+++.+
T Consensus 145 ~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~ 224 (360)
T PLN03178 145 FHLTLPEDKRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQP 224 (360)
T ss_pred ccccCCccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCC
Confidence 6644454445678999999999999999999999999999999999999999999988842 34578999999999988
Q ss_pred CCccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 160 DLAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 160 ~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+..+|+++|||+|+||||+|| .++||||+.+|+|++|+|.||++|||+||+||
T Consensus 225 ~~~~g~~~HTD~g~lTlL~qd-~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~ 277 (360)
T PLN03178 225 DLALGVEAHTDVSALTFILHN-MVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLE 277 (360)
T ss_pred ccccCcCCccCCCceEEEeeC-CCCceeEeECCEEEEcCCCCCeEEEEccHHHH
Confidence 889999999999999999998 89999999999999999999999999999986
No 11
>PLN02947 oxidoreductase
Probab=100.00 E-value=7.5e-56 Score=368.40 Aligned_cols=208 Identities=35% Similarity=0.649 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
++++++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++.........||+...........+|+|.+.
T Consensus 81 ~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~ 160 (374)
T PLN02947 81 PHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLK 160 (374)
T ss_pred HHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceecee
Confidence 56899999999999999999999999999999999999999999999998543221346776443333455678999887
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCC---hhHHHhHhCCCCccceEeeecCCCCCC
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLE---ENCFLDMYGEEATMIAVYNLYPPCPRP 159 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~---~~~~~~~~~~~~~~~lr~~~Yp~~~~~ 159 (213)
+...|... ..|.||+.+++||+.+++|+++|.+++.+|+++|+++||++ .++|.+.+ ....+.||++|||||+.+
T Consensus 161 ~~~~p~~~-~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~-~~~~~~lrln~YPp~p~~ 238 (374)
T PLN02947 161 LVCHPLSD-VLPHWPSSPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEF-EAGSQMMVVNCYPACPEP 238 (374)
T ss_pred eecCCccc-ccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHh-cCcceeeeeecCCCCCCc
Confidence 76555432 35789999999999999999999999999999999999997 45666666 467789999999999998
Q ss_pred CCccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 160 DLAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 160 ~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+..+|+++|||+|+||||+|| .++||||+.+|+|++|+|.||++|||+||+||
T Consensus 239 ~~~~G~~~HTD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq 291 (374)
T PLN02947 239 ELTLGMPPHSDYGFLTLLLQD-EVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLE 291 (374)
T ss_pred ccccCCCCccCCCceEEEEec-CCCCeeEeECCEEEeCCCCCCeEEEEeCceee
Confidence 889999999999999999998 89999999999999999999999999999996
No 12
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=8.5e-56 Score=367.73 Aligned_cols=210 Identities=39% Similarity=0.754 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++...+. .++||+...........||+|.+.
T Consensus 69 ~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~Gy~~~~~~~~~~~~d~~e~~~ 147 (362)
T PLN02393 69 DATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPA-TYEGYGSRLGVEKGAILDWSDYYF 147 (362)
T ss_pred HHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccC-cccccccccccccccccCchhhee
Confidence 5688999999999999999999999999999999999999999999999976554 589995332222345679999887
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCC--CccceEeeecCCCCCCC
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEE--ATMIAVYNLYPPCPRPD 160 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~--~~~~lr~~~Yp~~~~~~ 160 (213)
+...|.....+|.||+.+++|++.+++|++.|.+++.+|+++|+++||+++++|.+.+... +.+.||++|||+++.++
T Consensus 148 ~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~ 227 (362)
T PLN02393 148 LHYLPSSLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPD 227 (362)
T ss_pred eeecCccccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcc
Confidence 7654444446789999899999999999999999999999999999999999999888422 34799999999999888
Q ss_pred CccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 161 LAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
..+|+++|||+|+||||+|+++++||||+.+|+|++|+|.||++|||+||+||
T Consensus 228 ~~~g~~~HtD~g~lTlL~q~~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~ 280 (362)
T PLN02393 228 LTLGLSPHSDPGGMTILLPDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQ 280 (362)
T ss_pred cccccccccCCceEEEEeeCCCCCcceeeECCEEEECCCCCCeEEEEcchhhH
Confidence 88999999999999999985479999999999999999999999999999986
No 13
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=1.5e-55 Score=359.57 Aligned_cols=210 Identities=42% Similarity=0.809 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
..++++|++||++||||+|+|||||.++++++++.+++||+||.|+|+++..... .+.||............+|.+.+.
T Consensus 34 ~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~-~~~gY~~~~~~~~~~~~~w~d~~~ 112 (322)
T KOG0143|consen 34 EEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPG-KYRGYGTSFILSPLKELDWRDYLT 112 (322)
T ss_pred HHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCC-Ccccccccccccccccccchhhee
Confidence 4578899999999999999999999999999999999999999999999987665 579998776654556789999988
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCc
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLA 162 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~ 162 (213)
+...|.....++.||+.++.||+++++|.+.+.+++..|+++|+++||++..++.+.+.......||++|||||+.++.+
T Consensus 113 ~~~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~~~~r~n~Yp~cp~pe~~ 192 (322)
T KOG0143|consen 113 LLSAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGGQVMRLNYYPPCPEPELT 192 (322)
T ss_pred eeccCccccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccceEEEEeecCCCcCcccc
Confidence 77777655677899999999999999999999999999999999999998766666663335679999999999999999
Q ss_pred cccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 163 IGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 163 ~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|+++|||.++||||.||+.++||||.. +|+|++|+|.|+++||||||+||
T Consensus 193 lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~ 244 (322)
T KOG0143|consen 193 LGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQ 244 (322)
T ss_pred ccccCccCcCceEEEEccCCcCceEEEecCCeEEECCCCCCCEEEEcccHHh
Confidence 9999999999999999976899999995 99999999999999999999986
No 14
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-55 Score=364.73 Aligned_cols=207 Identities=35% Similarity=0.581 Sum_probs=178.3
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhh-ccccCCcccccccccccCCCccCChhHhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKY-ARDIAIGFEGYANHIINGEEQAFDWIDRL 81 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~-~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~ 81 (213)
++++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++ .....+..++|... ........+|+|.+
T Consensus 56 ~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~ 134 (348)
T PLN02912 56 ADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSF-NVSKEKVSNWRDFL 134 (348)
T ss_pred HHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccc-cccccccCCchheE
Confidence 35789999999999999999999999999999999999999999999995 33333223333322 11224457899988
Q ss_pred hccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCC
Q 042664 82 YLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDL 161 (213)
Q Consensus 82 ~~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~ 161 (213)
.+...+... .+|.||..+++||+++++|++.|.+++.+|+++|+++||+++++|.+.+ ....+.||++||||++.++.
T Consensus 135 ~~~~~~~~~-~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YPp~~~~~~ 212 (348)
T PLN02912 135 RLHCYPIED-FIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTL-GKHGQHMAINYYPPCPQPEL 212 (348)
T ss_pred EEeecCccc-ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCccceeeeeecCCCCChhh
Confidence 775433322 4688999999999999999999999999999999999999999998887 46678999999999998878
Q ss_pred ccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 162 AIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 162 ~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
.+|+++|||+|+||||+|| +++||||+.+|+|++|+|.||++|||+||+||
T Consensus 213 ~~G~~~HtD~g~lTlL~Qd-~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~ 263 (348)
T PLN02912 213 TYGLPGHKDANLITVLLQD-EVSGLQVFKDGKWIAVNPIPNTFIVNLGDQMQ 263 (348)
T ss_pred cCCcCCCcCCCceEEEEEC-CCCceEEEECCcEEECCCcCCeEEEEcCHHHH
Confidence 8999999999999999998 89999999999999999999999999999986
No 15
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.4e-55 Score=362.22 Aligned_cols=209 Identities=27% Similarity=0.448 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccC--CCccCChhHh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIING--EEQAFDWIDR 80 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~--~~~~~d~~e~ 80 (213)
++++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++........+||.+.+.+. .....||+|.
T Consensus 23 ~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~GY~~~~~e~~~~~~~~d~kE~ 102 (320)
T PTZ00273 23 MRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRGYGAFGAEQLDPSKPYDYKET 102 (320)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCCCCCccccccCCCCCCCccce
Confidence 35788999999999999999999999999999999999999999999998654333689998775443 2445799999
Q ss_pred hhccCC-CCc---------cccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEe
Q 042664 81 LYLITG-PED---------RKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVY 150 (213)
Q Consensus 81 ~~~~~~-p~~---------~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~ 150 (213)
|.++.. |.. ..++|.||+.+|+|++++++|++.|.+++..|+++|+++||+++++|.+.+ ..+.+.||+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl 181 (320)
T PTZ00273 103 FDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGLREDFFDSKF-MEPLSVFRM 181 (320)
T ss_pred EEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhh-CCCcceeee
Confidence 988643 211 125799999899999999999999999999999999999999999999888 567789999
Q ss_pred eecCCCCCC-CCccccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 151 NLYPPCPRP-DLAIGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 151 ~~Yp~~~~~-~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|||+++.+ +..+|+++|||+|+||||+|| .++||||++ +|+|++|+|.||++|||+||+||
T Consensus 182 ~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd-~~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~l~ 245 (320)
T PTZ00273 182 KHYPALPQTKKGRTVCGEHTDYGIITLLYQD-SVGGLQVRNLSGEWMDVPPLEGSFVVNIGDMME 245 (320)
T ss_pred eecCCCCCccccCcccccccCCCeEEEEecC-CCCceEEECCCCCEEeCCCCCCeEEEEHHHHHH
Confidence 999999864 468899999999999999998 899999997 89999999999999999999985
No 16
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.9e-55 Score=362.86 Aligned_cols=206 Identities=37% Similarity=0.708 Sum_probs=180.5
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
.+++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++..... ..+||... .......||+|.|.
T Consensus 41 ~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~GY~~~--~~~~~~~d~kE~~~ 117 (345)
T PLN02750 41 TEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEV-NPMGYHDS--EHTKNIRDWKEVFD 117 (345)
T ss_pred HHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCC-CccCcCcc--cccccCCCceeEEE
Confidence 3578999999999999999999999999999999999999999999999966544 45799642 22234569999998
Q ss_pred ccCC-----CC-----c---cccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceE
Q 042664 83 LITG-----PE-----D---RKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAV 149 (213)
Q Consensus 83 ~~~~-----p~-----~---~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr 149 (213)
+... |. . ...+|.||+.++.||+++++|++.|.+++.+|+++|+++||+++++|.+.+ ..+.+.||
T Consensus 118 ~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lR 196 (345)
T PLN02750 118 FLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLPADRLNGYF-KDQISFAR 196 (345)
T ss_pred EeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCcceEEE
Confidence 8642 10 0 012689999899999999999999999999999999999999999999988 56778999
Q ss_pred eeecCCCCCCCCccccCCccCCCceEEEeeCCCCCceeEee--CCceEEccCCCCcEEEecCccCC
Q 042664 150 YNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 150 ~~~Yp~~~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
++||||++.++..+|+++|||+|+||||+|| +++||||+. +|+|++|+|.||++|||+||+||
T Consensus 197 ~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~~~g~Wi~V~p~pg~~vVNiGD~L~ 261 (345)
T PLN02750 197 FNHYPPCPAPHLALGVGRHKDGGALTVLAQD-DVGGLQISRRSDGEWIPVKPIPDAFIINIGNCMQ 261 (345)
T ss_pred EEecCCCCCcccccCcCCCCCCCeEEEEecC-CCCceEEeecCCCeEEEccCCCCeEEEEhHHHHH
Confidence 9999999987788999999999999999998 899999975 89999999999999999999986
No 17
>PLN02704 flavonol synthase
Probab=100.00 E-value=2.6e-55 Score=361.79 Aligned_cols=210 Identities=40% Similarity=0.768 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhcccc-CCcccccccccccCCCccCChhHhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDI-AIGFEGYANHIINGEEQAFDWIDRL 81 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~~Gy~~~~~~~~~~~~d~~e~~ 81 (213)
++++++|.+||+++|||||+||||+.++++++++.+++||+||.|+|+++.... ...++||............+|++.+
T Consensus 54 ~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~ 133 (335)
T PLN02704 54 EKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHL 133 (335)
T ss_pred HHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeee
Confidence 467899999999999999999999999999999999999999999999987643 2257899765444445556777765
Q ss_pred hccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCC-CCccceEeeecCCCCCCC
Q 042664 82 YLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGE-EATMIAVYNLYPPCPRPD 160 (213)
Q Consensus 82 ~~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~-~~~~~lr~~~Yp~~~~~~ 160 (213)
.....|......|.||..+|.||+.+.+|++.|.+++.+|+++|+++||+++++|.+.+.. ...++||++||||++.++
T Consensus 134 ~~~~~p~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~ 213 (335)
T PLN02704 134 FHRIWPPSAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPD 213 (335)
T ss_pred EeeecCCcccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcc
Confidence 4433333223457899989999999999999999999999999999999999999887743 234689999999999888
Q ss_pred CccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 161 LAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
..+|+++|||+|+||||+|| .++||||+.+|+|++|+|.||++|||+||+||
T Consensus 214 ~~~g~~~HtD~g~lTlL~qd-~v~GLQV~~~g~Wi~V~p~pg~lvVNvGD~L~ 265 (335)
T PLN02704 214 LALGVVAHTDMSAITILVPN-EVQGLQVFRDDHWFDVKYIPNALVIHIGDQIE 265 (335)
T ss_pred cccCccCccCCcceEEEecC-CCCceeEeECCEEEeCCCCCCeEEEEechHHH
Confidence 88999999999999999998 89999999999999999999999999999986
No 18
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.3e-55 Score=360.29 Aligned_cols=208 Identities=39% Similarity=0.649 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccc-cCCcccccccccccCCCccCChhHhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARD-IAIGFEGYANHIINGEEQAFDWIDRL 81 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~ 81 (213)
++++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ..+..++|.... .......+|+|.+
T Consensus 49 ~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~ 127 (337)
T PLN02639 49 AQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFN-VRKEKVHNWRDYL 127 (337)
T ss_pred HHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCccccccccc-cccCcccCchheE
Confidence 56899999999999999999999999999999999999999999999997543 221233332221 1223456899988
Q ss_pred hccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCC
Q 042664 82 YLITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDL 161 (213)
Q Consensus 82 ~~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~ 161 (213)
.+...|.. ..+|.||+.++.|++.+++|+++|.+++.+|+++|+++||+++++|.+.+ ..+.+.||++|||+++.++.
T Consensus 128 ~~~~~p~~-~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~ 205 (337)
T PLN02639 128 RLHCYPLD-KYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVL-GEQGQHMAVNYYPPCPEPEL 205 (337)
T ss_pred EeeecCCc-ccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-CCCccEEEEEcCCCCCCccc
Confidence 77554432 23578999899999999999999999999999999999999999998887 56778999999999998888
Q ss_pred ccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 162 AIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 162 ~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
.+|+++|||+|+||||+||+.++||||+.+|+|++|+|.||++|||+||+||
T Consensus 206 ~~g~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~L~ 257 (337)
T PLN02639 206 TYGLPAHTDPNALTILLQDQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQ 257 (337)
T ss_pred ccCCCCCcCCCceEEEEecCCcCceEeecCCeEEeccCCCCeEEEechhHHH
Confidence 8999999999999999997349999999999999999999999999999986
No 19
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.6e-55 Score=359.23 Aligned_cols=208 Identities=29% Similarity=0.455 Sum_probs=178.9
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCC----ccCChh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEE----QAFDWI 78 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~----~~~d~~ 78 (213)
.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.... ..+||.+...+... ...||+
T Consensus 26 ~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~--~~~GY~~~~~e~~~~~~~~~~d~k 103 (332)
T PLN03002 26 NHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNE--KHRGYTPVLDEKLDPKNQINGDHK 103 (332)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCC--CCCCcCcccccccccccCCCCcce
Confidence 467889999999999999999999999999999999999999999999986543 47999876544321 236999
Q ss_pred HhhhccCC-CCcc-------ccCCCCCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHh-CCCCccc
Q 042664 79 DRLYLITG-PEDR-------KQLKFWPEN--PESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMY-GEEATMI 147 (213)
Q Consensus 79 e~~~~~~~-p~~~-------~~~~~wP~~--~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~-~~~~~~~ 147 (213)
|.|.++.. |... ..+|.||.. +|+||+.+++|+++|.+++..|+++|+++||+++++|.+.+ .+.+.+.
T Consensus 104 E~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~ 183 (332)
T PLN03002 104 EGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIAT 183 (332)
T ss_pred eeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhccccccCCCchh
Confidence 99988753 2211 247899975 78999999999999999999999999999999999997622 2456789
Q ss_pred eEeeecCCCCCCC-CccccCCccCCCceEEEeeCCCCCceeEeeC-----CceEEccCCCCcEEEecCccCC
Q 042664 148 AVYNLYPPCPRPD-LAIGLKPHADGTAFTYLLQDKEVEGLQVLKD-----NQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 148 lr~~~Yp~~~~~~-~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~-----g~W~~v~~~~~~~iVn~Gd~le 213 (213)
||++|||+++.++ ..+|+++|||+|+||||+|| +++||||+.+ |+|++|+|.||++||||||+||
T Consensus 184 lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd-~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~ 254 (332)
T PLN03002 184 MRLLRYQGISDPSKGIYACGAHSDFGMMTLLATD-GVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLE 254 (332)
T ss_pred eeeeeCCCCCCcccCccccccccCCCeEEEEeeC-CCCceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHH
Confidence 9999999998765 57999999999999999998 8999999873 6899999999999999999986
No 20
>PLN02904 oxidoreductase
Probab=100.00 E-value=9.8e-55 Score=360.26 Aligned_cols=207 Identities=30% Similarity=0.598 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
.+++++|.+||++||||+|+||||+.++++++++++++||+||.|+|+++.......+.||+...........+|++.+.
T Consensus 67 ~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~ 146 (357)
T PLN02904 67 SCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIK 146 (357)
T ss_pred HHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEee
Confidence 45789999999999999999999999999999999999999999999998653322445665432222334457777655
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCc
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLA 162 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~ 162 (213)
....|.. ..+|.||+.+|.||+++++|++.|.+++.+|+++|+++||+++++|.+.+ ..+.+.||++|||||+.++..
T Consensus 147 ~~~~p~~-~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YPp~p~~~~~ 224 (357)
T PLN02904 147 HYSHPLS-KWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEI-EEGSQVMAVNCYPACPEPEIA 224 (357)
T ss_pred eccCCcc-cccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCcccEEEeeecCCCCCcccc
Confidence 4433322 23688999899999999999999999999999999999999999999888 566789999999999988889
Q ss_pred cccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 163 IGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 163 ~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|+++|||+|+||||+|+ . +||||+. +|+|++|+|.||++|||+||+||
T Consensus 225 ~g~~~HtD~g~lTlL~qd-~-~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le 274 (357)
T PLN02904 225 LGMPPHSDFGSLTILLQS-S-QGLQIMDCNKNWVCVPYIEGALIVQLGDQVE 274 (357)
T ss_pred cCCcCccCCCceEEEecC-C-CeeeEEeCCCCEEECCCCCCeEEEEccHHHH
Confidence 999999999999999997 4 8999998 79999999999999999999986
No 21
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=2.2e-54 Score=353.80 Aligned_cols=203 Identities=31% Similarity=0.604 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
++++++|.+||++||||||+|||||.++++++++++++||+||.|+|+++... .+||.+...+ ....||+|.+.
T Consensus 21 ~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~----~~gy~~~~~~--~~~~d~ke~~~ 94 (321)
T PLN02299 21 AATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMVA----SKGLEGVQTE--VEDLDWESTFF 94 (321)
T ss_pred HHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhcccC----CCCccccccc--CCCcCHHHHcc
Confidence 35789999999999999999999999999999999999999999999997432 3566443222 24468999998
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCC--CCccceEeeecCCCCCCC
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGE--EATMIAVYNLYPPCPRPD 160 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~~ 160 (213)
+...|.. ..+.||+.++.|++.+++|++.|.+++.+|+++|+++||+++++|.+.+.. .+.+.||++||||++.++
T Consensus 95 ~~~~~~~--~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YPp~~~~~ 172 (321)
T PLN02299 95 LRHLPES--NLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPCPKPD 172 (321)
T ss_pred cccCCcc--ccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeEecCCCCCcc
Confidence 8644432 357799989999999999999999999999999999999999999887742 345689999999999887
Q ss_pred CccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 161 LAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
..+|+++|||+|+||||+|++.++||||+.+|+|++|+|.||++|||+||+||
T Consensus 173 ~~~G~~~HTD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~ 225 (321)
T PLN02299 173 LVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLE 225 (321)
T ss_pred cccCccCccCCCeEEEEEecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHH
Confidence 78899999999999999996359999999999999999999999999999986
No 22
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=2.2e-53 Score=348.94 Aligned_cols=206 Identities=25% Similarity=0.452 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ..+||+..... .....+|+|.+.
T Consensus 35 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~---~~~Gy~~~~~~-~~~~~~~~e~~~ 110 (335)
T PLN02156 35 SDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP---DPFGYGTKRIG-PNGDVGWLEYIL 110 (335)
T ss_pred hHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC---CCcccCccccC-CCCCCCceeeEe
Confidence 45678999999999999999999999999999999999999999999998543 24588643221 223468999887
Q ss_pred ccCCCCc--cccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCC-hhHHHhHhC-CCCccceEeeecCCCCC
Q 042664 83 LITGPED--RKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLE-ENCFLDMYG-EEATMIAVYNLYPPCPR 158 (213)
Q Consensus 83 ~~~~p~~--~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~~~-~~~~~~lr~~~Yp~~~~ 158 (213)
+...+.. ...+|.||..++.|++.+++|++.|.+++.+|+++|+++||++ +++|.+.+. ..+.+.||++|||+++.
T Consensus 111 ~~~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~lRl~~YP~~~~ 190 (335)
T PLN02156 111 LNANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEE 190 (335)
T ss_pred eecCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceEeEEeCCCCCC
Confidence 7654332 1246889988899999999999999999999999999999996 478888763 34568999999999985
Q ss_pred CC--CccccCCccCCCceEEEeeCCCCCceeEee-CCceEEccCCCCcEEEecCccCC
Q 042664 159 PD--LAIGLKPHADGTAFTYLLQDKEVEGLQVLK-DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 159 ~~--~~~~~~~HtD~~~lTll~q~~~~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
.+ ..+|+++|||+|+||||+|| +++||||+. +|+|++|+|.||++|||+||+||
T Consensus 191 ~~~~~~~g~~~HTD~g~lTlL~Qd-~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~ 247 (335)
T PLN02156 191 TPEKVEIGFGEHTDPQLISLLRSN-DTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQ 247 (335)
T ss_pred CccccccCCCCccCCCceEEEEeC-CCCceEEEeCCCCEEEccCCCCcEEEEhHHHHH
Confidence 32 57999999999999999998 899999986 89999999999999999999986
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.3e-53 Score=346.98 Aligned_cols=205 Identities=29% Similarity=0.518 Sum_probs=170.2
Q ss_pred HHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhc-ccc-CCcccccc---cccccC----CCccC
Q 042664 5 ELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYA-RDI-AIGFEGYA---NHIING----EEQAF 75 (213)
Q Consensus 5 ~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~-~~~-~~~~~Gy~---~~~~~~----~~~~~ 75 (213)
.+++|.+||++||||||+|||||.++++++++.+++||+||.|+|+++. ... .++..||. ...... .....
T Consensus 48 ~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 127 (341)
T PLN02984 48 DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGTPALTPSGKALSRGPQESNV 127 (341)
T ss_pred HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCcccccccccccccccccCCC
Confidence 3589999999999999999999999999999999999999999999985 221 11222332 111111 11246
Q ss_pred ChhHhhhccCCCCccccCCCC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCC--hhHHHhHhCCCCccceEe
Q 042664 76 DWIDRLYLITGPEDRKQLKFW---PENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLE--ENCFLDMYGEEATMIAVY 150 (213)
Q Consensus 76 d~~e~~~~~~~p~~~~~~~~w---P~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~--~~~~~~~~~~~~~~~lr~ 150 (213)
||+|.|.++..+... .+.| |..+|.||+.+++|+++|.+++.+|+++||++||++ +++|.+.+ ..+.+.||+
T Consensus 128 D~kE~f~~~~~~~~~--~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~f~~~~-~~~~~~lRl 204 (341)
T PLN02984 128 NWVEGFNIPLSSLSL--LQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQKMSYL-SESTGVIRV 204 (341)
T ss_pred CeeeEEeCcCCchhh--hhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHh-cCccceEEE
Confidence 999999886432211 1123 224689999999999999999999999999999999 99998888 567789999
Q ss_pred eecCCCCCCCCccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 151 NLYPPCPRPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 151 ~~Yp~~~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|||||+.++..+|+++|||+|+||||+|| +++||||+.+|+|++|+|.||++|||+||+||
T Consensus 205 ~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd-~v~GLQV~~~g~Wv~V~p~pgalVVNiGD~Le 266 (341)
T PLN02984 205 YRYPQCSNEAEAPGMEVHTDSSVISILNQD-EVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQ 266 (341)
T ss_pred EeCCCCCCcccccCccCccCCCceEEEEeC-CCCCeeEeeCCceEECCCCCCeEEEECChhhh
Confidence 999999987788999999999999999998 89999999999999999999999999999996
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=2.1e-52 Score=339.13 Aligned_cols=202 Identities=31% Similarity=0.611 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhh
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLY 82 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~ 82 (213)
++++++|++||++||||||+|||||.++++++++.+++||+||.++|. +..... .++... ...+..||+|.|.
T Consensus 17 ~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~-~~~~~~---~~~~~~---~~~~~~d~kE~~~ 89 (303)
T PLN02403 17 SKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESF-YESEIA---KALDNE---GKTSDVDWESSFF 89 (303)
T ss_pred HHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHh-hccccc---Cccccc---CCCCCccHhhhcc
Confidence 457999999999999999999999999999999999999999999996 221111 111111 1133569999999
Q ss_pred ccCCCCccccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHhCC--CCccceEeeecCCCCCCC
Q 042664 83 LITGPEDRKQLKFWPENPESFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMYGE--EATMIAVYNLYPPCPRPD 160 (213)
Q Consensus 83 ~~~~p~~~~~~~~wP~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~--~~~~~lr~~~Yp~~~~~~ 160 (213)
++..|.. +.|.||+.+|.||+.+++|++.|.+++..|+++|+++||+++++|.+.+.. .+.+.||++|||+++.++
T Consensus 90 ~~~~p~~--~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~ 167 (303)
T PLN02403 90 IWHRPTS--NINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPSVGTKVAKYPECPRPE 167 (303)
T ss_pred cccCCcc--chhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCccceeeeEcCCCCCCcc
Confidence 8765542 457899888999999999999999999999999999999999999888742 334579999999998877
Q ss_pred CccccCCccCCCceEEEeeCCCCCceeEeeCCceEEccCCC-CcEEEecCccCC
Q 042664 161 LAIGLKPHADGTAFTYLLQDKEVEGLQVLKDNQWYRVPVIP-EAFVINVGDQIE 213 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q~~~~~GLqv~~~g~W~~v~~~~-~~~iVn~Gd~le 213 (213)
...|+++|||+|+||||+|++.++||||..+|+|++|+|.| |++|||+||+||
T Consensus 168 ~~~G~~~HtD~g~lTlL~q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~ 221 (303)
T PLN02403 168 LVRGLREHTDAGGIILLLQDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLE 221 (303)
T ss_pred cccCccCccCCCeEEEEEecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHH
Confidence 77899999999999999997359999998899999999999 699999999986
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=1.1e-50 Score=329.76 Aligned_cols=196 Identities=26% Similarity=0.416 Sum_probs=163.9
Q ss_pred HHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCccCChhHhhhcc
Q 042664 5 ELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQAFDWIDRLYLI 84 (213)
Q Consensus 5 ~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~ 84 (213)
.+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ..+||.+.+. ..+++|.+.+.
T Consensus 17 ~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~--~~~GY~~~~~-----~~~~~e~~~~~ 89 (300)
T PLN02365 17 QIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVI--LGSGYMAPSE-----VNPLYEALGLY 89 (300)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCC--CCCCCCCcCC-----CCCchhheecc
Confidence 4689999999999999999999999999999999999999999999964322 3579976532 23567777654
Q ss_pred CCCCccccCCCCC---CCChhHHHHHHHHHHHHHHHHHHHHHHHHhHcCC-ChhHHHhHhCCCCccceEeeecCCCCCCC
Q 042664 85 TGPEDRKQLKFWP---ENPESFRKILEEYNAKMVKLNEFLLKAIGLALNL-EENCFLDMYGEEATMIAVYNLYPPCPRPD 160 (213)
Q Consensus 85 ~~p~~~~~~~~wP---~~~~~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl-~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~ 160 (213)
..... ...+.|| ..+|+||+.+++|++.|.+++.+|+++|+++||+ ++++|.+. .+.||++|||+++.++
T Consensus 90 ~~~~~-~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~-----~~~lr~~~YP~~p~~~ 163 (300)
T PLN02365 90 DMASP-QAVDTFCSQLDASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW-----PSQFRINKYNFTPETV 163 (300)
T ss_pred cccCc-hhhhhccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc-----ccceeeeecCCCCCcc
Confidence 21111 1123344 2468899999999999999999999999999999 78887542 4789999999998877
Q ss_pred CccccCCccCCCceEEEeeCCCCCceeEee--CCceEEccCCCCcEEEecCccCC
Q 042664 161 LAIGLKPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
..+|+++|||+|+||||+||+.++||||++ +|+|++|+|.||++|||+||+||
T Consensus 164 ~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~ 218 (300)
T PLN02365 164 GSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVAT 218 (300)
T ss_pred ccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCCCCCeEEEEhhHHHH
Confidence 889999999999999999973489999987 68999999999999999999986
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.1e-46 Score=295.58 Aligned_cols=177 Identities=38% Similarity=0.692 Sum_probs=153.8
Q ss_pred HHHHHHhhc-CCHHHHhhhccccC-CcccccccccccC--CCccCChhHhhhccCCCCccccCCCCCCCChhHHHHHHHH
Q 042664 35 KAVGRQFFA-LPAEEKNKYARDIA-IGFEGYANHIING--EEQAFDWIDRLYLITGPEDRKQLKFWPENPESFRKILEEY 110 (213)
Q Consensus 35 ~~~~~~fF~-lp~e~K~~~~~~~~-~~~~Gy~~~~~~~--~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~f~~~~~~~ 110 (213)
.+.+++||+ ||.|+|+++..... +.++||+...... .....||+|.|.+...|.....+|.||+.+|.|++++++|
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~y 81 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGEY 81 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHHH
Confidence 568999997 99999999976542 2478996543321 2335699999988655544446789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCccccCCccCCCceEEEeeCCCCCceeEee
Q 042664 111 NAKMVKLNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAIGLKPHADGTAFTYLLQDKEVEGLQVLK 190 (213)
Q Consensus 111 ~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~ 190 (213)
++.|.+++.+|+++|+++||+++++|.+.+ ....+.||++||||++.++..+|+++|||+|+||||+|| +++||||+.
T Consensus 82 ~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~-~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd-~v~GLqV~~ 159 (262)
T PLN03001 82 GDCMKALAQKLLAFISESLGLPCSCIEDAV-GDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQD-DVEGLQLLK 159 (262)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHh-cCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeC-CCCceEEee
Confidence 999999999999999999999999998887 456678999999999988889999999999999999998 899999999
Q ss_pred CCceEEccCCCCcEEEecCccCC
Q 042664 191 DNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 191 ~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+|+|++|+|.||++||||||+||
T Consensus 160 ~g~Wi~V~p~p~a~vVNiGD~l~ 182 (262)
T PLN03001 160 DAEWLMVPPISDAILIIIADQTE 182 (262)
T ss_pred CCeEEECCCCCCcEEEEccHHHH
Confidence 99999999999999999999985
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.88 E-value=4e-23 Score=145.90 Aligned_cols=96 Identities=36% Similarity=0.694 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccccccCCCc-cCChhHh
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANHIINGEEQ-AFDWIDR 80 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~~~~~~~~-~~d~~e~ 80 (213)
.++++++|.+||+++|||||+||||+.++++++++++++||+||.++|+++.... .++||.+.+.+.... ..||+|.
T Consensus 13 ~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~Gy~~~~~~~~~~~~~d~~E~ 90 (116)
T PF14226_consen 13 REEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSP--SYRGYSPPGSESTDGGKPDWKES 90 (116)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCT--TCSEEEESEEECCTTCCCCSEEE
T ss_pred HHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCC--CCcccccCCccccCCCCCCceEE
Confidence 4678999999999999999999999999999999999999999999999995443 689999887776555 8999999
Q ss_pred hhccCC-CCc------cccCCCCCCC
Q 042664 81 LYLITG-PED------RKQLKFWPEN 99 (213)
Q Consensus 81 ~~~~~~-p~~------~~~~~~wP~~ 99 (213)
|.++.. +.. ...+|.||++
T Consensus 91 ~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 91 FNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp EEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred eEEECCCCccccccccccCCCCCCCC
Confidence 999887 332 2678999964
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.69 E-value=7.5e-17 Score=113.77 Aligned_cols=62 Identities=26% Similarity=0.596 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhccccCCcccccccc
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYARDIAIGFEGYANH 66 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~Gy~~~ 66 (213)
+++++|.+||++||||||+||||+.++++++++.+++||+||.++|+++...+. ...||+..
T Consensus 55 ~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~~-~~~gy~~~ 116 (120)
T PLN03176 55 EICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSGG-KKGGFIVS 116 (120)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCCC-ccCCcchh
Confidence 578999999999999999999999999999999999999999999999977665 56798654
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.60 E-value=5.5e-16 Score=106.04 Aligned_cols=64 Identities=45% Similarity=0.836 Sum_probs=52.7
Q ss_pred cceEeeecCCCCCCCCccccCCccCC--CceEEEeeCCCCCceeEeeCCceEEccCCCCcEEEecCccCC
Q 042664 146 MIAVYNLYPPCPRPDLAIGLKPHADG--TAFTYLLQDKEVEGLQVLKDNQWYRVPVIPEAFVINVGDQIE 213 (213)
Q Consensus 146 ~~lr~~~Yp~~~~~~~~~~~~~HtD~--~~lTll~q~~~~~GLqv~~~g~W~~v~~~~~~~iVn~Gd~le 213 (213)
+.||+++||+ ++...++++|+|. +++|+|+|+ +++||||..+++|+.|++.++.++||+||+|+
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~-~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~ 67 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQD-EVGGLQVRDDGEWVDVPPPPGGFIVNFGDALE 67 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEET-STS-EEEEETTEEEE----TTCEEEEEBHHHH
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecc-cchheeccccccccCccCccceeeeeceeeee
Confidence 5699999998 5578899999999 999999997 89999999999999999999999999999763
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=90.46 E-value=0.35 Score=32.37 Aligned_cols=56 Identities=29% Similarity=0.293 Sum_probs=37.1
Q ss_pred eEeeecCCCCCCCCccccCCccCC-----CceEEEeeCC-C-----CCceeEee----CCceEEcc-----CCCCcEEEe
Q 042664 148 AVYNLYPPCPRPDLAIGLKPHADG-----TAFTYLLQDK-E-----VEGLQVLK----DNQWYRVP-----VIPEAFVIN 207 (213)
Q Consensus 148 lr~~~Yp~~~~~~~~~~~~~HtD~-----~~lTll~q~~-~-----~~GLqv~~----~g~W~~v~-----~~~~~~iVn 207 (213)
|++++|++ .-.+.+|+|. ..+|+++.=+ . .+.|++.. ++....++ |.+|.+++.
T Consensus 1 ~~~~~y~~------G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F 74 (100)
T PF13640_consen 1 MQLNRYPP------GGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIF 74 (100)
T ss_dssp -EEEEEET------TEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEE
T ss_pred CEEEEECc------CCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEE
Confidence 57788854 3457899998 6888885431 2 25578874 35566666 999999998
Q ss_pred cC
Q 042664 208 VG 209 (213)
Q Consensus 208 ~G 209 (213)
-+
T Consensus 75 ~~ 76 (100)
T PF13640_consen 75 PS 76 (100)
T ss_dssp ES
T ss_pred eC
Confidence 77
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=87.06 E-value=6.5 Score=29.26 Aligned_cols=80 Identities=21% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeeecCCCCCCCCccccCCccCCC--------ceEEEee--CCCCCc-
Q 042664 117 LNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNLYPPCPRPDLAIGLKPHADGT--------AFTYLLQ--DKEVEG- 185 (213)
Q Consensus 117 l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~--------~lTll~q--~~~~~G- 185 (213)
+...|.+.+...++++.. . ......+++.+|.+. -...+|.|.. .+|+++. +...+|
T Consensus 60 ~~~~l~~~i~~~~~~~~~----~--~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~ 127 (178)
T smart00702 60 VIERIRQRLADFLGLLRG----L--PLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGE 127 (178)
T ss_pred HHHHHHHHHHHHHCCCch----h--hccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCce
Confidence 334444555555555421 1 134456889999763 2357899966 6888764 212344
Q ss_pred eeEeeCC--ceEEccCCCCcEEEec
Q 042664 186 LQVLKDN--QWYRVPVIPEAFVINV 208 (213)
Q Consensus 186 Lqv~~~g--~W~~v~~~~~~~iVn~ 208 (213)
|.+...+ ....|.|..|.+||.-
T Consensus 128 ~~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 128 LVFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred EEecCCCCccceEEeCCCCcEEEEe
Confidence 6776643 3678999999988865
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=81.32 E-value=17 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=20.2
Q ss_pred CCceeEee-CCceEEccCCCCcEEEecCcc
Q 042664 183 VEGLQVLK-DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 183 ~~GLqv~~-~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
.+.|.+.+ .|. ..|+|..|.+||.-...
T Consensus 129 GGEl~~~~~~g~-~~Vkp~aG~~vlfps~~ 157 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKLPAGDLVLYPSTS 157 (226)
T ss_pred CCceEEecCCCc-EEEecCCCeEEEECCCC
Confidence 44588876 344 68899999999876544
No 33
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=78.20 E-value=26 Score=26.19 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=36.8
Q ss_pred cceEeeecCCCCCCCCccccCCccCCCceE----EE-eeCCCCCceeEee----CCceEEccCCCCcEEEecCcc
Q 042664 146 MIAVYNLYPPCPRPDLAIGLKPHADGTAFT----YL-LQDKEVEGLQVLK----DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 146 ~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT----ll-~q~~~~~GLqv~~----~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
...-+|+|++. -+++.|.|-.-+. |. ..= +.+...... ++..+.+...+|.++|+-|+.
T Consensus 95 n~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSL-G~~r~F~~~~~~~~~~~~~l~L~sGsllvM~G~s 162 (169)
T TIGR00568 95 DACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSL-GLPAIFLIGGLKRNDPPKRLRLHSGDVVIMGGES 162 (169)
T ss_pred CEEEEEeecCC------CccccccccccccCCCCEEEEeC-CCCEEEEecCCcCCCceEEEEeCCCCEEEECCch
Confidence 44678999764 3589999963221 11 111 222322221 456889999999999999974
No 34
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=71.99 E-value=13 Score=27.91 Aligned_cols=58 Identities=21% Similarity=0.417 Sum_probs=34.0
Q ss_pred cceEeeecCCCCCCCCccccCCccCCCce-------EEEeeCCCCCceeEee---CCceEEccCCCCcEEEecCcc
Q 042664 146 MIAVYNLYPPCPRPDLAIGLKPHADGTAF-------TYLLQDKEVEGLQVLK---DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 146 ~~lr~~~Yp~~~~~~~~~~~~~HtD~~~l-------Tll~q~~~~~GLqv~~---~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
...-+|+|.+ +. +++.|.|...+ ||-+-. ..-+.+.. .+..+.|...+|+++|+-|+.
T Consensus 97 n~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG~--~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~ 164 (194)
T PF13532_consen 97 NQCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLGS--SRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEA 164 (194)
T ss_dssp SEEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEES---EEEEEEECGGTS-EEEEEE-TTEEEEEETTH
T ss_pred CEEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEcc--CceEEEeeccCCCccEEEEcCCCCEEEeChHH
Confidence 4567899965 34 78999998733 222211 11234444 468999999999999999874
No 35
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=65.01 E-value=12 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHhhhcceEEEEccCCCHHHHHHHHHHHH
Q 042664 7 EKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGR 39 (213)
Q Consensus 7 ~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~ 39 (213)
....+++++.|||.|+| +|..++.++.+...
T Consensus 15 s~Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 15 STALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 34578999999999998 89999998887665
No 36
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=64.56 E-value=66 Score=25.07 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred ceEeeecCCCCCCCCccccCCccCCC-------ceEEEeeCCCCCcee-Eee---CCceEEccCCCCcEEEecCcc
Q 042664 147 IAVYNLYPPCPRPDLAIGLKPHADGT-------AFTYLLQDKEVEGLQ-VLK---DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 147 ~lr~~~Yp~~~~~~~~~~~~~HtD~~-------~lTll~q~~~~~GLq-v~~---~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
..-+|+|.+. . +++.|.|-. +++|-+ +.+... +.. .+.+..+...+|.++|.-|+.
T Consensus 117 a~LvN~Y~~G-----~-~mg~H~D~~E~~~~~pI~SvSL---G~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s 183 (213)
T PRK15401 117 ACLINRYAPG-----A-KLSLHQDKDERDFRAPIVSVSL---GLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS 183 (213)
T ss_pred EEEEEeccCc-----C-ccccccCCCcccCCCCEEEEeC---CCCeEEEecccCCCCceEEEEeCCCCEEEECchH
Confidence 3678999742 3 789999942 122222 223322 221 456899999999999998874
No 37
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=60.79 E-value=29 Score=26.92 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCccceEeeecCCCCC-CCCccccCCccCCCceEEEeeCCCCCceeEee--CCceEEccCCCCcEEEecCcc
Q 042664 143 EATMIAVYNLYPPCPR-PDLAIGLKPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 143 ~~~~~lr~~~Yp~~~~-~~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
.....||.+||-|... ++--..+. |--..+.|+ ..+-..+.. .|.=+.|||-=+..++|+||-
T Consensus 87 ~t~G~~~~~H~Hp~ade~E~y~vi~-----G~g~m~v~~-~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~ 152 (209)
T COG2140 87 KTPGAMRELHYHPNADEPEIYYVLK-----GEGRMLVQK-PEGEARVIAVRAGDVIYVPPGYGHYTINTGDE 152 (209)
T ss_pred ecCCcccccccCCCCCcccEEEEEe-----ccEEEEEEc-CCCcEEEEEecCCcEEEeCCCcceEeecCCCC
Confidence 3445678888765443 23222222 223345554 334455555 789999999999999999984
No 38
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=56.94 E-value=13 Score=29.06 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++.+...+.|.|||+
T Consensus 138 s~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 138 TPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred cHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 5788999999999999999999996
No 39
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=53.67 E-value=12 Score=24.05 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=17.2
Q ss_pred HHHHHHhhhcceEEEEccCCC
Q 042664 7 EKLRSVLSSWGCFQAINHGIE 27 (213)
Q Consensus 7 ~~l~~A~~~~Gff~l~~hgi~ 27 (213)
+.|...|.+.||.||..|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 467889999999999777553
No 40
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=52.95 E-value=15 Score=22.06 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=23.4
Q ss_pred cccCCccCC---CceEEE-------eeCCCCCceeEee-CCceEEccC
Q 042664 163 IGLKPHADG---TAFTYL-------LQDKEVEGLQVLK-DNQWYRVPV 199 (213)
Q Consensus 163 ~~~~~HtD~---~~lTll-------~q~~~~~GLqv~~-~g~W~~v~~ 199 (213)
-|.-+-+|- .-||+| +|. -+.-|||+. ||-|.+|.-
T Consensus 16 nG~~P~tdg~liT~ltfL~pkd~~~vq~-~f~~LQv~fgDGpWqdikg 62 (64)
T PF06820_consen 16 NGWFPETDGRLITGLTFLDPKDATRVQG-VFRHLQVRFGDGPWQDIKG 62 (64)
T ss_pred CccccCCCcceEeeeEEecccCchhhee-eeeeeEEEeccCChhhccC
Confidence 344455663 456666 222 257899998 999998863
No 41
>PRK08130 putative aldolase; Validated
Probab=49.50 E-value=20 Score=27.70 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++++...+.+.|||+
T Consensus 138 ~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 138 DPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred hHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5678899999999999999999996
No 42
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=49.42 E-value=22 Score=20.78 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcCC
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFALP 45 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~lp 45 (213)
+.+..|...+...||......|+-......++..-+..+.|+
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 467889999999999955556777777777777777777765
No 43
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=49.02 E-value=16 Score=20.83 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhhcceE
Q 042664 2 SAQELEKLRSVLSSWGCF 19 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff 19 (213)
+++..++|.+++++.||-
T Consensus 27 s~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 27 SEETRERILEAAEELGYR 44 (46)
T ss_dssp THHHHHHHHHHHHHHTB-
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 578899999999999983
No 44
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=47.20 E-value=28 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.4
Q ss_pred HHHHhhhcceEEEEccCCCHHHHHHHHHHHH
Q 042664 9 LRSVLSSWGCFQAINHGIEPAFLDKVKAVGR 39 (213)
Q Consensus 9 l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~ 39 (213)
-.+++++.|||.++| +|.+++.++.+.+.
T Consensus 17 Al~~lEDlGyycvDN--LPp~Llp~~~~~~~ 45 (286)
T COG1660 17 ALRVLEDLGYYCVDN--LPPQLLPKLADLML 45 (286)
T ss_pred HHHHHHhcCeeeecC--CCHHHHHHHHHHHh
Confidence 457889999999988 89999998888654
No 45
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=47.08 E-value=31 Score=21.92 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHH
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKA 36 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~ 36 (213)
+.++++.|.++++..||..=..+|.-.+-..+++.
T Consensus 14 ~~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~ 48 (74)
T PF08823_consen 14 DGDVAREVQEALKRLGYYKGEADGVWDEATEDALR 48 (74)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHH
Confidence 57889999999999999877777776655555444
No 46
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=45.03 E-value=50 Score=27.86 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhc
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFA 43 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~ 43 (213)
|++.+.++.+++.++|++.+.+-+++.+. +.+.++.|-.
T Consensus 121 ~~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~ 159 (366)
T TIGR02409 121 DDSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGF 159 (366)
T ss_pred CHHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhcc
Confidence 56778899999999999999998876653 4445555533
No 47
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=44.03 E-value=27 Score=27.06 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
+.++++.+.+++.+...+.+.|||+
T Consensus 135 s~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 135 TKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred hHHHHHHHHHHhCcCCEEEECCCCC
Confidence 5677888899999999999999996
No 48
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=43.53 E-value=14 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.623 Sum_probs=14.2
Q ss_pred CCceEEccCCCCcEEEecCcc
Q 042664 191 DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 191 ~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
+|+++.|+..++ +.+|+.
T Consensus 14 dGeF~~ik~~~~---~~vG~e 31 (56)
T PF12791_consen 14 DGEFIKIKRKPG---MEVGQE 31 (56)
T ss_pred CCcEEEEeCCCC---CcccCE
Confidence 788888888877 677764
No 49
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=42.97 E-value=52 Score=26.51 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFAL 44 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~l 44 (213)
+.+..++|.+++.++|++.+.|..++. +...+.++.|-.+
T Consensus 26 ~~~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 26 SDNQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred CHHHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 467789999999999999999988875 4555666666554
No 50
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=42.57 E-value=39 Score=20.63 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhhcc--eEEEEc------cCCCHHHHHHHHHHHH
Q 042664 2 SAQELEKLRSVLSSWG--CFQAIN------HGIEPAFLDKVKAVGR 39 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~G--ff~l~~------hgi~~~~~~~~~~~~~ 39 (213)
+.+....|.+.++++| .+.+.. +||+.+.+..+.+..+
T Consensus 22 ~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~ 67 (69)
T PF03460_consen 22 SAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELK 67 (69)
T ss_dssp EHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHH
Confidence 3556777888888776 666553 3577777777666544
No 51
>PF11771 DUF3314: Protein of unknown function (DUF3314) ; InterPro: IPR021748 This small family contains human, mouse and fish members but the function is not known.
Probab=42.17 E-value=50 Score=24.04 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=22.8
Q ss_pred CccccCCccCCCceEEEee-----C----CCCCceeEe---eCCceEEccCCCC
Q 042664 161 LAIGLKPHADGTAFTYLLQ-----D----KEVEGLQVL---KDNQWYRVPVIPE 202 (213)
Q Consensus 161 ~~~~~~~HtD~~~lTll~q-----~----~~~~GLqv~---~~g~W~~v~~~~~ 202 (213)
+.-+.+.|+|+-+|..==. + ....+-|++ .=|.|+.+.|.+.
T Consensus 70 gq~~~~~~~eyYFLCy~Dt~~~a~~~~~~~a~s~~~~~rlWSIGrWv~~~Pd~~ 123 (164)
T PF11771_consen 70 GQDWDSSHTEYYFLCYRDTWEPADDTGQSPANSCPQIQRLWSIGRWVQLGPDPA 123 (164)
T ss_pred CcccccccceEEEEEEccccccccccccCCcccCcceeEEEEecceEEcCCCcC
Confidence 4445568888877532100 0 002223333 3689999998554
No 52
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=39.60 E-value=57 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHH
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDK 33 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~ 33 (213)
+.++++.+++.++|++.|.+-.++.+.+.+
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~ 53 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA 53 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH
Confidence 478999999999999999988875654443
No 53
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=38.71 E-value=64 Score=27.18 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhc
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFA 43 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~ 43 (213)
++.+.++.+++.++|++.+.|-+++.+.. .+.++.|-.
T Consensus 114 d~~l~~~l~~l~~~G~v~~~g~~~~~~~~---~~~a~riG~ 151 (362)
T TIGR02410 114 DSTLKSFSKNIYKYGFTFVDNVPVTPEAT---EKLCERISI 151 (362)
T ss_pred HHHHHHHHHHHHhhCEEEEcCCCCCHHHH---HHHHHHhcc
Confidence 57788999999999999999988876543 445555543
No 54
>PRK15331 chaperone protein SicA; Provisional
Probab=38.64 E-value=33 Score=25.60 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhhcC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFFAL 44 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF~l 44 (213)
..+.++.|.+|+.+ |-=.-.-|||+++.++.++..+..||..
T Consensus 9 ~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 9 EERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 45677888888887 4333335899999999999999999964
No 55
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=38.22 E-value=67 Score=24.39 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=23.9
Q ss_pred CceEEEeeCCCCCc-----eeEee--CCceEEccCCCCcEEEecCcc
Q 042664 172 TAFTYLLQDKEVEG-----LQVLK--DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 172 ~~lTll~q~~~~~G-----Lqv~~--~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
|-=.+|+|+ ..| ..+.. .|.-+.|||.=+..+||+||.
T Consensus 92 G~g~~lLq~--~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 92 GEGLILLQK--EEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp SSEEEEEE---TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred CEEEEEEEe--cCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 455677885 344 22222 789999999999999999984
No 56
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=37.71 E-value=44 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++++...+.|.|||+
T Consensus 188 s~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 188 TNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred CHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5788999999999999999999996
No 57
>PRK06661 hypothetical protein; Provisional
Probab=37.65 E-value=33 Score=26.94 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhcceEEEEccCC
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++.++.+.+++.+...+.|.|||+
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCC
Confidence 567889999999999999999996
No 58
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=37.08 E-value=40 Score=25.10 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCceeEee-CCceEEccCCCCcEEEec
Q 042664 182 EVEGLQVLK-DNQWYRVPVIPEAFVINV 208 (213)
Q Consensus 182 ~~~GLqv~~-~g~W~~v~~~~~~~iVn~ 208 (213)
+.+=+-|++ ++.|+.|....|.+||.-
T Consensus 102 GtgYfDVrd~dd~WIRi~vekGDlivlP 129 (179)
T KOG2107|consen 102 GTGYFDVRDKDDQWIRIFVEKGDLIVLP 129 (179)
T ss_pred cceEEeeccCCCCEEEEEEecCCEEEec
Confidence 455577888 899999999999988864
No 59
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=36.89 E-value=46 Score=26.97 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++++...+.+.|||+
T Consensus 190 s~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 190 TDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred CHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5688899999999999999999996
No 60
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=36.68 E-value=36 Score=26.21 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhh-hcceEEEEccCC
Q 042664 3 AQELEKLRSVLS-SWGCFQAINHGI 26 (213)
Q Consensus 3 ~~~~~~l~~A~~-~~Gff~l~~hgi 26 (213)
+++++.+.++++ +...+.+.|||+
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCce
Confidence 344455555554 444555555554
No 61
>PRK06486 hypothetical protein; Provisional
Probab=36.51 E-value=36 Score=27.37 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++.+...+.|.|||+
T Consensus 161 s~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 161 DAAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred chhHHHHHHHHhCcCCEEEECCCCC
Confidence 4678999999999999999999996
No 62
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=35.64 E-value=35 Score=20.46 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=12.8
Q ss_pred ceeEeeCCceEEccCCC
Q 042664 185 GLQVLKDNQWYRVPVIP 201 (213)
Q Consensus 185 GLqv~~~g~W~~v~~~~ 201 (213)
=+||..+++|+.+.|.+
T Consensus 52 W~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 52 WAEVYLEGGWVPVDPTP 68 (68)
T ss_pred EEEEEECCCeEEEeCCC
Confidence 35677789999988754
No 63
>PRK06208 hypothetical protein; Provisional
Probab=35.50 E-value=38 Score=27.47 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
+.++++.+.+++++...+.+.|||+
T Consensus 176 s~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 176 DTSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred chHHHHHHHHHhccCCEEEECCCCc
Confidence 5688999999999999999999996
No 64
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=35.11 E-value=50 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
++++++.+.+++.+.-.+.+.|||+
T Consensus 133 s~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 133 TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CHHHHHHHHHHhCcCCEEEecCCCC
Confidence 5678889999999889999999996
No 65
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=34.68 E-value=1.5e+02 Score=22.81 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=28.0
Q ss_pred CCccccCCccCCCceEEEeeCCCCCceeEee--CCceEEccCCCCcEEEecCccC
Q 042664 160 DLAIGLKPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVPVIPEAFVINVGDQI 212 (213)
Q Consensus 160 ~~~~~~~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~~~~~~~iVn~Gd~l 212 (213)
.++++++ +..|-++..+..+|-|+.- .-.+.+. -...-.+...||..
T Consensus 151 aGSVgIa-----g~qt~IYp~~sPGGW~iIGrTp~~lfd~-~~~~p~ll~~GD~V 199 (202)
T TIGR00370 151 AGSVGIG-----GLQTGVYPISTPGGWQLIGKTPLALFDP-QENPPTLLRAGDIV 199 (202)
T ss_pred CceeEEc-----ccceEEEccCCCCcceEeeecchhhhCC-CCCCCcccCCCCEE
Confidence 4667777 5666676443778888843 3334322 23345778888864
No 66
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=34.43 E-value=20 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHcCCChhHHHhHhCCCCccceEeee
Q 042664 117 LNEFLLKAIGLALNLEENCFLDMYGEEATMIAVYNL 152 (213)
Q Consensus 117 l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~~~lr~~~ 152 (213)
=+..|+..|++.|+++.+.|.+.-...+.-++|+-.
T Consensus 18 ~G~~l~~~la~~l~l~s~~F~~i~V~g~avTFrv~~ 53 (91)
T PF11548_consen 18 EGSRLMEKLAELLHLPSSSFINISVVGPAVTFRVRP 53 (91)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEEEETTEEEEEE--
T ss_pred HHHHHHHHHHHHhCCCcccceeeeecCceEEEEecc
Confidence 367899999999999988887654445555666543
No 67
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=34.30 E-value=1.6e+02 Score=20.85 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=27.2
Q ss_pred ccccCCccCCCceEEEeeCCCCCceeEe-------eCCceEEccCC
Q 042664 162 AIGLKPHADGTAFTYLLQDKEVEGLQVL-------KDNQWYRVPVI 200 (213)
Q Consensus 162 ~~~~~~HtD~~~lTll~q~~~~~GLqv~-------~~g~W~~v~~~ 200 (213)
.+||..--|.|..|+.+.| + ...|.+ .+|+|+-+...
T Consensus 105 ~~gcN~AlD~GtYTF~f~D-G-s~v~ARYtftY~w~~g~WlI~~HH 148 (156)
T COG4875 105 TLGCNNALDAGTYTFIFTD-G-SNVQARYTFTYSWIDGTWLIVNHH 148 (156)
T ss_pred EeccccccccceEEEEEcC-C-cceeEEEEEEEEecCCeEEEEecc
Confidence 5678889999999999987 3 244432 28999877543
No 68
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=32.75 E-value=45 Score=25.80 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
+.++++.+.+++.+...+.|.|||+
T Consensus 132 s~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 132 STKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred hHHHHHHHHHHhhhCCEEehhcCCC
Confidence 4577888888888888999999986
No 69
>PRK07490 hypothetical protein; Provisional
Probab=31.50 E-value=49 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
+.++++.+.+++.+.-.+.|.|||+
T Consensus 145 ~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 145 LEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 4578899999999999999999996
No 70
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=30.87 E-value=3.1e+02 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=10.1
Q ss_pred EEccCCCCcEEEe
Q 042664 195 YRVPVIPEAFVIN 207 (213)
Q Consensus 195 ~~v~~~~~~~iVn 207 (213)
+.|.|..|..|+.
T Consensus 206 l~VkPkkG~ALlF 218 (310)
T PLN00052 206 LAVKPVKGDAVLF 218 (310)
T ss_pred eEeccCcceEEEE
Confidence 7888888877763
No 71
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=29.37 E-value=1.9e+02 Score=20.65 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhcceEEEEcc-CCCHHHHHHHHHHHH
Q 042664 3 AQELEKLRSVLSSWGCFQAINH-GIEPAFLDKVKAVGR 39 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~h-gi~~~~~~~~~~~~~ 39 (213)
...++++.+.++++.++++.++ |++...+..+....+
T Consensus 4 ~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 4 EELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 3578999999999998888874 888877776666544
No 72
>PRK06357 hypothetical protein; Provisional
Probab=27.64 E-value=76 Score=24.64 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHhhhc------ceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSW------GCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~------Gff~l~~hgi 26 (213)
++++++.+.+++++. ..+.+.|||+
T Consensus 141 s~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 141 SPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred cHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 456777777777764 4788888886
No 73
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=27.60 E-value=66 Score=18.59 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHcCCChhHHHhHh
Q 042664 102 SFRKILEEYNAKMVKLNEFLLKAIGLALNLEENCFLDMY 140 (213)
Q Consensus 102 ~f~~~~~~~~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~ 140 (213)
.-...+++++.........-...||..||++...+...+
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF 48 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWF 48 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccCH
Confidence 446788888888777888888899999999986655444
No 74
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=27.38 E-value=1e+02 Score=24.30 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHHHhh
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGRQFF 42 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~~fF 42 (213)
+.++=+.|...|+..||-.. .|-..+.+++...+++.+=
T Consensus 53 ~~~~d~~l~~~~~~~G~~vf--rGs~~dVL~Rf~~a~~a~~ 91 (241)
T COG1861 53 DKEEDDALEEVCRSHGFYVF--RGSEEDVLQRFIIAIKAYS 91 (241)
T ss_pred CCcchhHHHHHHHHcCeeEe--cCCHHHHHHHHHHHHHhcC
Confidence 44556788999999998766 5677888888888777653
No 75
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=27.37 E-value=86 Score=18.42 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENC 135 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~ 135 (213)
+...+++..|..++++.||.|.+.
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~ 37 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGG
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCe
Confidence 345678888999999999998654
No 76
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.86 E-value=93 Score=18.62 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhHH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENCF 136 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 136 (213)
+.-+++...|.+.+++.+|.|++.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v 39 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERV 39 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 3456788888999999999987543
No 77
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=26.82 E-value=66 Score=24.94 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHh--hhcceEEEEccCC
Q 042664 2 SAQELEKLRSVL--SSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~--~~~Gff~l~~hgi 26 (213)
++++++++.+++ .+...+.+.|||+
T Consensus 141 ~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 141 DEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred cHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 457788888888 6778889999996
No 78
>COG3100 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.47 E-value=2e+02 Score=19.21 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhcceEEEEccCCCHHHHHHHHH
Q 042664 4 QELEKLRSVLSSWGCFQAINHGIEPAFLDKVKA 36 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~ 36 (213)
+..+++.++.++.||+ |.-..-+.++++...+
T Consensus 65 ~dv~kV~~~i~~QGfy-LQ~pp~~e~llk~h~e 96 (103)
T COG3100 65 ADVEKVKQAIEEQGFY-LQLPPPPEDLLKQHLE 96 (103)
T ss_pred hhHHHHHHHHHhccee-EecCCCcHHHHHHhHH
Confidence 4567889999999974 5545556666665544
No 79
>PF13309 HTH_22: HTH domain
Probab=26.25 E-value=56 Score=19.97 Aligned_cols=22 Identities=23% Similarity=0.204 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHhhhcceEEEEc
Q 042664 2 SAQELEKLRSVLSSWGCFQAIN 23 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~ 23 (213)
+.+...++.+.+.+-|+|.+.+
T Consensus 22 ~~~~k~~iV~~L~~~G~F~lKg 43 (64)
T PF13309_consen 22 SKEEKKEIVRQLYEKGIFLLKG 43 (64)
T ss_pred CHHHHHHHHHHHHHCCCcccCc
Confidence 3456778899999999999986
No 80
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=26.11 E-value=1.3e+02 Score=23.15 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhhhcceEEEEcc-CCCHHHHHHHHHHHHHhhcCCH
Q 042664 2 SAQELEKLRSVLSSWGCFQAINH-GIEPAFLDKVKAVGRQFFALPA 46 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~h-gi~~~~~~~~~~~~~~fF~lp~ 46 (213)
++++++.|++=+++=||+.+... +.+...-..+.+..++.|-.+.
T Consensus 68 s~~e~~~Lr~Yl~~GGfl~~D~~~~~~~~~~~~~r~~~~~v~p~~~ 113 (207)
T PF13709_consen 68 SDEEIANLRRYLENGGFLLFDDRDCGSAGFDASFRRLMKRVFPEPP 113 (207)
T ss_pred CHHHHHHHHHHHHcCCEEEEECCCcccccccHHHHHHHHHhcCCCC
Confidence 57889999999999999999988 5566555666677777776333
No 81
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=26.00 E-value=1.4e+02 Score=19.75 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhcceEEEEcc----CCCHHHHH-HHHHHHHHhh
Q 042664 4 QELEKLRSVLSSWGCFQAINH----GIEPAFLD-KVKAVGRQFF 42 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gff~l~~h----gi~~~~~~-~~~~~~~~fF 42 (213)
..+.++.+.|+.+||+.+... -++..... .+.+..++..
T Consensus 16 k~r~kv~k~L~~~G~~rvQ~SVf~~~~~~~~~~~~l~~~l~~~i 59 (95)
T TIGR01573 16 KRRRKLRKLLEKYGLQRVQYSVFEGILEPNQLARKLIERLKRII 59 (95)
T ss_pred HHHHHHHHHHHHcchhheeccEEEEEcCHHHHHHHHHHHHHHhC
Confidence 678999999999999998865 35555555 6666666654
No 82
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=25.93 E-value=34 Score=17.34 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=12.0
Q ss_pred EEEEccCCCHHHHHHHH
Q 042664 19 FQAINHGIEPAFLDKVK 35 (213)
Q Consensus 19 f~l~~hgi~~~~~~~~~ 35 (213)
.||..||++.+.+..-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47788999887665443
No 83
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=25.85 E-value=91 Score=24.20 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCCCH
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGIEP 28 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi~~ 28 (213)
|.+..+.+.+.|++.|+|+|+.+-.+.
T Consensus 104 ~~~~m~~vl~~l~~~gl~FvDS~T~~~ 130 (213)
T PF04748_consen 104 DREAMRWVLEVLKERGLFFVDSRTTPR 130 (213)
T ss_dssp -HHHHHHHHHHHHHTT-EEEE-S--TT
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCCCcc
Confidence 445555566666666666665444333
No 84
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=25.82 E-value=1.4e+02 Score=17.02 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHH
Q 042664 5 ELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVG 38 (213)
Q Consensus 5 ~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~ 38 (213)
.++.+.+++++.||. |++++++.+++.+
T Consensus 20 ~~~~~l~~l~~~g~~------is~~l~~~~L~~~ 47 (48)
T PF11848_consen 20 EVKPLLDRLQQAGFR------ISPKLIEEILRRA 47 (48)
T ss_pred hHHHHHHHHHHcCcc------cCHHHHHHHHHHc
Confidence 345566667777765 5777777766543
No 85
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.31 E-value=1e+02 Score=18.05 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhHcCCChhH
Q 042664 113 KMVKLNEFLLKAIGLALNLEENC 135 (213)
Q Consensus 113 ~~~~l~~~ll~~l~~~Lgl~~~~ 135 (213)
.-+++...|...+++.+|.|++.
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~ 38 (61)
T PRK02220 16 QLKALVKDVTAAVSKNTGAPAEH 38 (61)
T ss_pred HHHHHHHHHHHHHHHHhCcChhh
Confidence 44578888899999999998654
No 86
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=25.04 E-value=1.1e+02 Score=17.97 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhHH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENCF 136 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 136 (213)
+.-++++..|.+.+++.+|.|++.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 3456788889999999999987543
No 87
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=25.00 E-value=1.2e+02 Score=24.31 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhc--ceEEEEccCCCHHHHHHHHHHHHH
Q 042664 3 AQELEKLRSVLSSW--GCFQAINHGIEPAFLDKVKAVGRQ 40 (213)
Q Consensus 3 ~~~~~~l~~A~~~~--Gff~l~~hgi~~~~~~~~~~~~~~ 40 (213)
++..++|.++|++. ++++--|-.+.-.++.++.+.+-.
T Consensus 104 ~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~ 143 (266)
T TIGR00036 104 EEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAK 143 (266)
T ss_pred HHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 34455555555552 244444444444444444444433
No 88
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=24.72 E-value=68 Score=19.35 Aligned_cols=34 Identities=6% Similarity=0.152 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhHcCCChhHHH
Q 042664 104 RKILEEYNAKMVK----LNEFLLKAIGLALNLEENCFL 137 (213)
Q Consensus 104 ~~~~~~~~~~~~~----l~~~ll~~l~~~Lgl~~~~~~ 137 (213)
...|++++....- ........||..+|+++..+-
T Consensus 13 ~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvK 50 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFK 50 (58)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHee
Confidence 5677777777665 777788889999999876553
No 89
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=23.76 E-value=21 Score=27.61 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=33.3
Q ss_pred cCCCceEEEeeC--CCCCceeE-ee--CCceEEccCCCCcEEEecCcc
Q 042664 169 ADGTAFTYLLQD--KEVEGLQV-LK--DNQWYRVPVIPEAFVINVGDQ 211 (213)
Q Consensus 169 tD~~~lTll~q~--~~~~GLqv-~~--~g~W~~v~~~~~~~iVn~Gd~ 211 (213)
...+-+|+|-+. +..+|.+. +. ++.|+.+-+..+.+||.+|+.
T Consensus 105 k~v~WlT~Lg~~~l~~LGG~~~lr~~L~~~~~~i~~~~~g~vI~aG~~ 152 (208)
T PF11876_consen 105 KGVNWLTFLGDPLLEKLGGEDALRSALPGPWIRIHPYGGGVVIQAGEW 152 (208)
T ss_pred CCcchhheeCHHHHHhhccHHHHHhhCCCCceEEEECCCcEEEEeCCC
Confidence 445789999763 25777774 32 789999999999999999974
No 90
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=23.67 E-value=1e+02 Score=17.79 Aligned_cols=24 Identities=21% Similarity=0.147 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENC 135 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~ 135 (213)
+.-++++..|.+.+++.+|.+++.
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~ 37 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEAT 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCccc
Confidence 445678888999999999998643
No 91
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=23.57 E-value=93 Score=18.46 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhHH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENCF 136 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 136 (213)
+.-++++..|.+++++.+|.|+..+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v 39 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAI 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 3456788899999999999986543
No 92
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=23.10 E-value=1.5e+02 Score=19.51 Aligned_cols=30 Identities=7% Similarity=0.040 Sum_probs=22.7
Q ss_pred cCCCceEEEeeCCCCCceeEeeCC--ceEEcc
Q 042664 169 ADGTAFTYLLQDKEVEGLQVLKDN--QWYRVP 198 (213)
Q Consensus 169 tD~~~lTll~q~~~~~GLqv~~~g--~W~~v~ 198 (213)
..-|..++.+.+++.+|+.+++-| .|..|.
T Consensus 50 ~~~G~avm~~~~~~e~G~~~~t~G~~~r~~vd 81 (87)
T TIGR01873 50 PPKGSLVITWSSNTCPGFEFFTLGENRKEIVE 81 (87)
T ss_pred CCCccEEEEEeCCCCCCcEEEecCCCCccEEe
Confidence 555888889888789999999833 566554
No 93
>smart00153 VHP Villin headpiece domain.
Probab=23.02 E-value=70 Score=17.20 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHH-HhhcCCHHHHhhh
Q 042664 26 IEPAFLDKVKAVGR-QFFALPAEEKNKY 52 (213)
Q Consensus 26 i~~~~~~~~~~~~~-~fF~lp~e~K~~~ 52 (213)
++.+..+.++.+++ +|..||...+...
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP~WKq~~l 29 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLPLWKQNQL 29 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCcHhhHHHH
Confidence 35667778888776 6778888766554
No 94
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=22.79 E-value=1.3e+02 Score=19.47 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhcCCHHHHhh
Q 042664 29 AFLDKVKAVGRQFFALPAEEKNK 51 (213)
Q Consensus 29 ~~~~~~~~~~~~fF~lp~e~K~~ 51 (213)
+.++.+..--..|.+||.|.|..
T Consensus 21 EVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 21 EVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHcCChhhHHH
Confidence 67777777888899999999987
No 95
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=22.72 E-value=1.7e+02 Score=23.61 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhcce-------EEEEccCCCHHHHHHHHHHHHHhhcCCHHHHhhhc
Q 042664 4 QELEKLRSVLSSWGC-------FQAINHGIEPAFLDKVKAVGRQFFALPAEEKNKYA 53 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gf-------f~l~~hgi~~~~~~~~~~~~~~fF~lp~e~K~~~~ 53 (213)
..+..|.+-|.++|. |-+.|-.=+++-++.+.+++++-++.+.+....+.
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~~~ 123 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEKLD 123 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456788999999995 44557777889999999999999998888766654
No 96
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=22.69 E-value=1.8e+02 Score=23.52 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhhhcceEEEEc-cCCCHHHHHHHHHHHHH
Q 042664 2 SAQELEKLRSVLSSWGCFQAIN-HGIEPAFLDKVKAVGRQ 40 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~-hgi~~~~~~~~~~~~~~ 40 (213)
.|+...++.+-|.+.|.--|++ -|.+.+.++.+-++++.
T Consensus 78 ~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~ 117 (266)
T COG0289 78 TPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK 117 (266)
T ss_pred CchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh
Confidence 3566677777788888766666 47888777777776665
No 97
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.09 E-value=2.2e+02 Score=22.15 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhcce--EEEEccCCCHHHHHHHHHHHHHhh
Q 042664 3 AQELEKLRSVLSSWGC--FQAINHGIEPAFLDKVKAVGRQFF 42 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gf--f~l~~hgi~~~~~~~~~~~~~~fF 42 (213)
++++..+++-|+++|. +-|+-..-+.+.++-+.+++..|.
T Consensus 134 pEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFi 175 (268)
T KOG4175|consen 134 PEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFI 175 (268)
T ss_pred hHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceE
Confidence 4556666666666653 333334445555555555555554
No 98
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.96 E-value=2.1e+02 Score=19.30 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=22.6
Q ss_pred CCccCCCceEEEeeCCCCCceeEee--CCceEEcc
Q 042664 166 KPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVP 198 (213)
Q Consensus 166 ~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~ 198 (213)
..|..-|..++.+.+++.+|+.+++ +..|..|.
T Consensus 48 ~~~~~~G~avmv~~~~~eqG~~~~t~G~~rr~~vD 82 (97)
T PRK11558 48 TQLAEEGNVVMAWATNTESGFEFQTFGENRRIPVD 82 (97)
T ss_pred HHhCCCCcEEEEEcCCCCCCcEEEecCCCCccEEe
Confidence 4444558888888877788999988 33355554
No 99
>PRK07044 aldolase II superfamily protein; Provisional
Probab=21.54 E-value=94 Score=24.74 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhhcceEEEEccCC
Q 042664 2 SAQELEKLRSVLSSWGCFQAINHGI 26 (213)
Q Consensus 2 ~~~~~~~l~~A~~~~Gff~l~~hgi 26 (213)
+.++++.+.+++.+...+.|.|||+
T Consensus 150 ~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 150 DLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CHHHHHHHHHHhccCCEEEECCCCc
Confidence 4566788888999999999999996
No 100
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=21.50 E-value=1.4e+02 Score=18.04 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.9
Q ss_pred cCCCHHHHHHHHH--HHHHhh-cCCHHHHhhhc
Q 042664 24 HGIEPAFLDKVKA--VGRQFF-ALPAEEKNKYA 53 (213)
Q Consensus 24 hgi~~~~~~~~~~--~~~~fF-~lp~e~K~~~~ 53 (213)
.-||.++...+.+ .+..|| .|+...|..+.
T Consensus 4 ~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~i 36 (63)
T PF13376_consen 4 VEVPEDLEAALEANPEAKEFFESLTPSYRREYI 36 (63)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
Confidence 4578777777665 677777 57887777763
No 101
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=21.48 E-value=2.5e+02 Score=20.61 Aligned_cols=38 Identities=8% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhcceEEEEc-cCCCHHHHHHHHHHHHH
Q 042664 3 AQELEKLRSVLSSWGCFQAIN-HGIEPAFLDKVKAVGRQ 40 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~-hgi~~~~~~~~~~~~~~ 40 (213)
.+..++|.+.+.++-.++|.+ +|++...++++.+..+.
T Consensus 4 ~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 4 QKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 467899999999988777775 79999888877765543
No 102
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=21.45 E-value=2.7e+02 Score=22.34 Aligned_cols=40 Identities=30% Similarity=0.304 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhhcce--EEEEc-cCCCHHHHHHHHHHHHHhhc
Q 042664 4 QELEKLRSVLSSWGC--FQAIN-HGIEPAFLDKVKAVGRQFFA 43 (213)
Q Consensus 4 ~~~~~l~~A~~~~Gf--f~l~~-hgi~~~~~~~~~~~~~~fF~ 43 (213)
.....+.+++..+|| |+++| ||=....+..+.+..+..|.
T Consensus 90 ~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 90 ALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 345678889999999 55555 88666666655555444443
No 103
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=21.21 E-value=1.5e+02 Score=17.46 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhHcCCChhH
Q 042664 112 AKMVKLNEFLLKAIGLALNLEENC 135 (213)
Q Consensus 112 ~~~~~l~~~ll~~l~~~Lgl~~~~ 135 (213)
+.-++++..|...++..||.+++.
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~ 38 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLES 38 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 344578888899999999998653
No 104
>PF05338 DUF717: Protein of unknown function (DUF717); InterPro: IPR008002 This entry is represented by the Human herpesvirus 8, Orf30 protein; it is a family of uncharacterised viral proteins.
Probab=20.73 E-value=84 Score=18.76 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHhhcCCHHHHhh
Q 042664 35 KAVGRQFFALPAEEKNK 51 (213)
Q Consensus 35 ~~~~~~fF~lp~e~K~~ 51 (213)
++.+..||+.|..+-..
T Consensus 7 f~eC~~FF~rPlp~li~ 23 (55)
T PF05338_consen 7 FEECLKFFSRPLPELID 23 (55)
T ss_pred HHHHHHHHcCcHHHHHH
Confidence 45688899999775444
No 105
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=20.66 E-value=1.4e+02 Score=19.56 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhcceEEEEccCCCHHHHHHHHHHHH
Q 042664 3 AQELEKLRSVLSSWGCFQAINHGIEPAFLDKVKAVGR 39 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~~~~ 39 (213)
++.+.+...|++..|--.-..-||-.++++.+....+
T Consensus 49 A~qa~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~ 85 (95)
T smart00759 49 AEEAQQMIGALRSIGAHPKSGAGIADDLLENLKASQK 85 (95)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhh
Confidence 3456777889999998777777888888887765443
No 106
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=20.62 E-value=3.4e+02 Score=19.60 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhhcceEEEEc-cCCCHHHHHHHHHHHH
Q 042664 3 AQELEKLRSVLSSWGCFQAIN-HGIEPAFLDKVKAVGR 39 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~~-hgi~~~~~~~~~~~~~ 39 (213)
.+..+++.+.+++.-++++.+ +|++...+..+....+
T Consensus 6 ~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 43 (157)
T cd05797 6 EEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELR 43 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 357889999999998888776 4898887777666555
No 107
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=20.32 E-value=99 Score=26.48 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhhcceEEEE--ccCCCH
Q 042664 3 AQELEKLRSVLSSWGCFQAI--NHGIEP 28 (213)
Q Consensus 3 ~~~~~~l~~A~~~~Gff~l~--~hgi~~ 28 (213)
..++.+|.+||++.|+.+++ +||--.
T Consensus 435 D~aig~Iy~A~~~~~y~lvvTADHGNAE 462 (531)
T KOG4513|consen 435 DEAIGKIYDAIEQVGYILVVTADHGNAE 462 (531)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCCCCHH
Confidence 45788999999999999998 577433
No 108
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.25 E-value=1.7e+02 Score=19.18 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCccCCCceEEEeeCCCCCceeEee--CCceEEcc
Q 042664 166 KPHADGTAFTYLLQDKEVEGLQVLK--DNQWYRVP 198 (213)
Q Consensus 166 ~~HtD~~~lTll~q~~~~~GLqv~~--~g~W~~v~ 198 (213)
..+.--|..++.+++++.+|+++++ +-.|..|.
T Consensus 46 ~~~~~~G~a~m~~~~~neqG~~~~t~G~~~r~~vD 80 (86)
T PF09707_consen 46 TEWIGDGSAVMVWSDNNEQGFDFRTLGDPRREPVD 80 (86)
T ss_pred HhhCCCccEEEEEccCCCCCEEEEEeCCCCCcEEe
Confidence 3445568888898887799999988 33566554
No 109
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=20.22 E-value=31 Score=19.82 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhHcCCChhH
Q 042664 116 KLNEFLLKAIGLALNLEENC 135 (213)
Q Consensus 116 ~l~~~ll~~l~~~Lgl~~~~ 135 (213)
......+..|+..||++.++
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~ 54 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEY 54 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHH
T ss_pred CCCHHHHHHHHHHHCCCHHH
Confidence 34444555566666655443
No 110
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=20.17 E-value=1.4e+02 Score=19.52 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHc
Q 042664 101 ESFRKILEEYNAKMVKLNEFLLKAIGLAL 129 (213)
Q Consensus 101 ~~f~~~~~~~~~~~~~l~~~ll~~l~~~L 129 (213)
|.|+..+.+..+++-.+...|++.+...-
T Consensus 24 p~f~~~ld~~s~rll~l~n~ll~~~~~~~ 52 (91)
T PF08066_consen 24 PEFAESLDEQSQRLLSLINSLLKSAGSKS 52 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45555555555555555555555544433
No 111
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.09 E-value=1.4e+02 Score=15.59 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=19.4
Q ss_pred HHHHHHHhhhcceEEEEccCCCHHHHHHHHH
Q 042664 6 LEKLRSVLSSWGCFQAINHGIEPAFLDKVKA 36 (213)
Q Consensus 6 ~~~l~~A~~~~Gff~l~~hgi~~~~~~~~~~ 36 (213)
.++|.+.|+..| +.-.|--.++++++.+
T Consensus 6 v~eLk~~l~~~g---L~~~G~K~~Li~Rl~~ 33 (35)
T PF02037_consen 6 VAELKEELKERG---LSTSGKKAELIERLKE 33 (35)
T ss_dssp HHHHHHHHHHTT---S-STSSHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CCCCCCHHHHHHHHHH
Confidence 567888888877 3556666677777655
No 112
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=20.05 E-value=55 Score=19.17 Aligned_cols=15 Identities=20% Similarity=-0.035 Sum_probs=8.5
Q ss_pred ccCCccCCCceEEEe
Q 042664 164 GLKPHADGTAFTYLL 178 (213)
Q Consensus 164 ~~~~HtD~~~lTll~ 178 (213)
-+|+|||++--.+|.
T Consensus 24 liGeHtDy~gG~Vl~ 38 (52)
T PF10509_consen 24 LIGEHTDYNGGFVLP 38 (52)
T ss_dssp EE-TT-GGGT-EEEE
T ss_pred ecCcccccCCCeEEE
Confidence 379999997655554
Done!