Query 042671
Match_columns 88
No_of_seqs 177 out of 1057
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02849 beta-glucosidase 99.9 8.2E-28 1.8E-32 192.8 6.2 66 1-66 421-486 (503)
2 PLN02814 beta-glucosidase 99.9 1.7E-27 3.7E-32 191.0 6.3 74 1-74 421-494 (504)
3 PF00232 Glyco_hydro_1: Glycos 99.9 9.8E-28 2.1E-32 188.8 4.0 64 1-65 392-455 (455)
4 PRK09852 cryptic 6-phospho-bet 99.9 3E-27 6.6E-32 188.3 6.3 67 1-67 403-473 (474)
5 TIGR01233 lacG 6-phospho-beta- 99.9 3.6E-27 7.9E-32 187.3 5.2 64 1-66 404-467 (467)
6 PLN02998 beta-glucosidase 99.9 4E-27 8.6E-32 188.6 5.2 63 1-63 426-488 (497)
7 PRK13511 6-phospho-beta-galact 99.9 5.7E-27 1.2E-31 186.0 5.1 63 1-65 406-468 (469)
8 PRK09589 celA 6-phospho-beta-g 99.9 7.8E-27 1.7E-31 185.8 5.6 65 1-65 405-474 (476)
9 PRK09593 arb 6-phospho-beta-gl 99.9 9.6E-27 2.1E-31 185.4 6.0 67 1-67 406-477 (478)
10 PRK15014 6-phospho-beta-glucos 99.9 1.5E-26 3.2E-31 184.4 5.7 66 1-66 406-476 (477)
11 KOG0626 Beta-glucosidase, lact 99.9 1.7E-25 3.7E-30 180.2 5.6 65 1-66 447-512 (524)
12 COG2723 BglB Beta-glucosidase/ 99.9 1.8E-24 3.9E-29 172.4 2.1 63 1-64 392-454 (460)
13 TIGR03356 BGL beta-galactosida 99.9 1E-23 2.3E-28 165.7 2.4 54 1-56 374-427 (427)
14 COG3693 XynA Beta-1,4-xylanase 90.9 0.39 8.4E-06 38.0 4.2 51 7-62 290-343 (345)
15 smart00633 Glyco_10 Glycosyl h 88.2 0.37 7.9E-06 35.3 2.1 37 10-55 217-253 (254)
16 PRK10150 beta-D-glucuronidase; 77.7 4.6 9.9E-05 33.2 4.6 50 5-62 541-594 (604)
17 PF00331 Glyco_hydro_10: Glyco 77.3 1.9 4E-05 33.0 2.1 42 10-58 276-318 (320)
18 PF02836 Glyco_hydro_2_C: Glyc 61.5 10 0.00022 28.1 3.1 46 9-61 248-294 (298)
19 PF01229 Glyco_hydro_39: Glyco 39.7 28 0.0006 28.0 2.6 47 6-59 309-359 (486)
20 PRK13251 transcription attenua 37.3 7.8 0.00017 24.5 -0.7 15 1-15 11-25 (75)
21 PF02081 TrpBP: Tryptophan RNA 30.0 8.3 0.00018 24.4 -1.4 14 2-15 12-25 (75)
22 TIGR00063 folE GTP cyclohydrol 20.1 59 0.0013 23.4 1.2 27 38-64 14-40 (180)
No 1
>PLN02849 beta-glucosidase
Probab=99.94 E-value=8.2e-28 Score=192.75 Aligned_cols=66 Identities=68% Similarity=1.186 Sum_probs=61.9
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCCC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSVR 66 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~~ 66 (88)
|++||+|||||+|||+|||+|||||..||++||||++||+++.+++|+||+|++||+++|++|+.-
T Consensus 421 l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~~~~ 486 (503)
T PLN02849 421 VLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGNSTF 486 (503)
T ss_pred HHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999999999999999987668999999999999999998743
No 2
>PLN02814 beta-glucosidase
Probab=99.94 E-value=1.7e-27 Score=190.98 Aligned_cols=74 Identities=54% Similarity=1.068 Sum_probs=66.2
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCCCcccchhhh
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSVRSVNEAFKL 74 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~~~~~~~~~~ 74 (88)
|++||+|||||+|||+|||+|||||..||++||||++||+++++++|+||+|++||+++|+....+.+..-+.+
T Consensus 421 l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~~~~~~~~~~~~ 494 (504)
T PLN02814 421 VLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGTIDVASQDTIQL 494 (504)
T ss_pred HHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcCCChhccchhhh
Confidence 47899999999999999999999999999999999999998767899999999999999998877764444443
No 3
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.94 E-value=9.8e-28 Score=188.78 Aligned_cols=64 Identities=47% Similarity=0.856 Sum_probs=54.3
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSV 65 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~ 65 (88)
|++||+|||||+||++|||+|||||..||++||||++||+ .++++|+||+|++||+++|++|++
T Consensus 392 v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~-~~~~~R~pK~S~~~y~~~i~~ng~ 455 (455)
T PF00232_consen 392 VLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDF-FDTLKRTPKKSAYWYKDFIRSNGF 455 (455)
T ss_dssp HHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEET-TTTTEEEEBHHHHHHHHHHHHTEE
T ss_pred HHhhhccCCCeeeEeeeccccccccccCccCccCceEEcC-CCCcCeeeccHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999999997 358999999999999999999874
No 4
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.94 E-value=3e-27 Score=188.32 Aligned_cols=67 Identities=34% Similarity=0.582 Sum_probs=62.5
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCC-CceeeeeEEEcCCCC---CcceeecchHHHHHHHHhcCCCCc
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGG-YEWSYGLYYVDRDDP---GLKRYPKLSAHWYSRFLKGRSVRS 67 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~G-y~~RfGL~~VD~~~~---~~~R~pK~Sa~~y~~ii~~~~~~~ 67 (88)
|++||+|||||+|||+|||||||||..| |++||||++||+++. +++|+||+|++||+++|++|+.+.
T Consensus 403 ~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~S~~wy~~ii~~ng~~~ 473 (474)
T PRK09852 403 MGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKKSFWWYKKVIASNGEDL 473 (474)
T ss_pred HHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceecccHHHHHHHHHHhCCccC
Confidence 5789999999999999999999999999 999999999999875 689999999999999999988653
No 5
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.93 E-value=3.6e-27 Score=187.25 Aligned_cols=64 Identities=45% Similarity=0.977 Sum_probs=60.5
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCCC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSVR 66 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~~ 66 (88)
|++||+|||||+|||+|||+|||||..||++||||++||++ +++|+||+|++||+++|+++.++
T Consensus 404 ~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~--t~~R~~K~S~~wy~~ii~~~~~~ 467 (467)
T TIGR01233 404 LSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFD--TQERYPKKSAHWYKKLAETQVIE 467 (467)
T ss_pred HHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCC--CCccccccHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999997 58999999999999999998764
No 6
>PLN02998 beta-glucosidase
Probab=99.93 E-value=4e-27 Score=188.59 Aligned_cols=63 Identities=63% Similarity=1.232 Sum_probs=60.1
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGR 63 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~ 63 (88)
|++||+|||||+|||+|||+|||||..||++||||++||++|++++|+||+|++||+++|+++
T Consensus 426 ~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~~ 488 (497)
T PLN02998 426 VLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKGT 488 (497)
T ss_pred HHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999997678999999999999999975
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.93 E-value=5.7e-27 Score=185.96 Aligned_cols=63 Identities=43% Similarity=0.944 Sum_probs=60.0
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSV 65 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~ 65 (88)
|++||+|||||+|||+|||+|||||..||++||||++||++ +++|+||+|++||+++|+++++
T Consensus 406 ~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~--~~~R~pK~S~~wy~~~i~~~~~ 468 (469)
T PRK13511 406 ISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFE--TQERYPKKSAYWYKKLAETKVI 468 (469)
T ss_pred HHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCC--cCccccccHHHHHHHHHHhCCC
Confidence 57899999999999999999999999999999999999997 4799999999999999999876
No 8
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.93 E-value=7.8e-27 Score=185.84 Aligned_cols=65 Identities=32% Similarity=0.576 Sum_probs=60.9
Q ss_pred ChHHH-hcCCceeEEEeeecchhccccCC-CceeeeeEEEcCCCC---CcceeecchHHHHHHHHhcCCC
Q 042671 1 MLDAV-RNESNTRGYFTWSFLDLFELLGG-YEWSYGLYYVDRDDP---GLKRYPKLSAHWYSRFLKGRSV 65 (88)
Q Consensus 1 v~kAi-~dGv~v~GY~~WSl~DnfEW~~G-y~~RfGL~~VD~~~~---~~~R~pK~Sa~~y~~ii~~~~~ 65 (88)
|++|| +|||||+|||+|||+|||||..| |++||||++||+++. +++|+||+|++||+++|++|+.
T Consensus 405 ~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~pK~S~~wy~~~i~~ng~ 474 (476)
T PRK09589 405 MKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERSRKKSFYWYRDVIANNGE 474 (476)
T ss_pred HHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccccccHHHHHHHHHHhcCC
Confidence 57899 89999999999999999999999 999999999999875 6899999999999999998764
No 9
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.93 E-value=9.6e-27 Score=185.40 Aligned_cols=67 Identities=36% Similarity=0.619 Sum_probs=62.1
Q ss_pred ChHHHh-cCCceeEEEeeecchhccccCC-CceeeeeEEEcCCCC---CcceeecchHHHHHHHHhcCCCCc
Q 042671 1 MLDAVR-NESNTRGYFTWSFLDLFELLGG-YEWSYGLYYVDRDDP---GLKRYPKLSAHWYSRFLKGRSVRS 67 (88)
Q Consensus 1 v~kAi~-dGv~v~GY~~WSl~DnfEW~~G-y~~RfGL~~VD~~~~---~~~R~pK~Sa~~y~~ii~~~~~~~ 67 (88)
|++||+ |||||+|||+|||+|||||..| |++||||++||+++. +++|+||+|++||+++|++++.+.
T Consensus 406 ~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~~~~~~ 477 (478)
T PRK09593 406 MRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKRSKKKSFDWYKKVIASNGEDL 477 (478)
T ss_pred HHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccceecccHHHHHHHHHHhCCcCC
Confidence 578995 9999999999999999999999 999999999999865 689999999999999999887754
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.93 E-value=1.5e-26 Score=184.39 Aligned_cols=66 Identities=29% Similarity=0.612 Sum_probs=61.0
Q ss_pred ChHHHh-cCCceeEEEeeecchhccccCC-CceeeeeEEEcCCCC---CcceeecchHHHHHHHHhcCCCC
Q 042671 1 MLDAVR-NESNTRGYFTWSFLDLFELLGG-YEWSYGLYYVDRDDP---GLKRYPKLSAHWYSRFLKGRSVR 66 (88)
Q Consensus 1 v~kAi~-dGv~v~GY~~WSl~DnfEW~~G-y~~RfGL~~VD~~~~---~~~R~pK~Sa~~y~~ii~~~~~~ 66 (88)
|++||+ |||||+|||+|||||||||..| |++||||++||+++. +++|+||+|++||+++|++|+..
T Consensus 406 l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~~R~pK~S~~wy~~ii~~ng~~ 476 (477)
T PRK15014 406 MKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDMSRSRKKSFNWYKEVIASNGEK 476 (477)
T ss_pred HHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCcccceecccHHHHHHHHHHhcCCC
Confidence 578995 9999999999999999999999 999999999999875 68999999999999999987653
No 11
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.7e-25 Score=180.23 Aligned_cols=65 Identities=58% Similarity=1.162 Sum_probs=61.5
Q ss_pred ChHHHh-cCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCCCC
Q 042671 1 MLDAVR-NESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRSVR 66 (88)
Q Consensus 1 v~kAi~-dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~~~ 66 (88)
|++||. |||||+|||+|||||||||..||+.||||++||+.|+ ++|.||.|++||+++++.+..+
T Consensus 447 ~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~-l~R~pK~Sa~wy~~fl~~~~~~ 512 (524)
T KOG0626|consen 447 VLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDP-LKRYPKLSAKWYKKFLKGKVKP 512 (524)
T ss_pred HHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCC-CcCCchhHHHHHHHHHcCCCCC
Confidence 578995 9999999999999999999999999999999999986 9999999999999999988765
No 12
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.8e-24 Score=172.45 Aligned_cols=63 Identities=38% Similarity=0.800 Sum_probs=60.1
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHhcCC
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKGRS 64 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~~~ 64 (88)
|++||+|||+|+||++||+|||+||++||++||||++||+++. ++|+||+|++||++++++|+
T Consensus 392 v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~-~~R~~KkS~~WyK~vi~sng 454 (460)
T COG2723 392 VKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTD-LERTPKKSFYWYKEVIESNG 454 (460)
T ss_pred HHHHHHcCCCcccceecccccccchhhccccccccEEEccccc-ceeeecCceeeeHHHHhcCC
Confidence 5789999999999999999999999999999999999999842 89999999999999999998
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=99.88 E-value=1e-23 Score=165.66 Aligned_cols=54 Identities=46% Similarity=0.840 Sum_probs=51.5
Q ss_pred ChHHHhcCCceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHHH
Q 042671 1 MLDAVRNESNTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWY 56 (88)
Q Consensus 1 v~kAi~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y 56 (88)
|++||+|||||+||++|||+|||||..||++||||++||++ +++|+||+|++||
T Consensus 374 ~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~--~~~R~~K~S~~wy 427 (427)
T TIGR03356 374 LARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE--TQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHCCCCEEEEEecccccccchhcccccccceEEECCC--CCcccccceeeeC
Confidence 57899999999999999999999999999999999999997 5899999999997
No 14
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=90.95 E-value=0.39 Score=38.03 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=39.2
Q ss_pred cCCceeEEEeeecchhccccCCCceeee---eEEEcCCCCCcceeecchHHHHHHHHhc
Q 042671 7 NESNTRGYFTWSFLDLFELLGGYEWSYG---LYYVDRDDPGLKRYPKLSAHWYSRFLKG 62 (88)
Q Consensus 7 dGv~v~GY~~WSl~DnfEW~~Gy~~RfG---L~~VD~~~~~~~R~pK~Sa~~y~~ii~~ 62 (88)
..-.|.+.+.|.++|+++|..|..++++ -.-+|- .=+||+..++.++++..
T Consensus 290 ~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~-----n~~pKPa~~aI~e~la~ 343 (345)
T COG3693 290 NPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDD-----NYQPKPAYKAIAEVLAP 343 (345)
T ss_pred cccccceEEEeeeccCcccccCCccCcCCCCCcccCC-----CCCcchHHHHHHHHhcC
Confidence 3556999999999999999999888875 333333 23789999998877654
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=88.16 E-value=0.37 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.9
Q ss_pred ceeEEEeeecchhccccCCCceeeeeEEEcCCCCCcceeecchHHH
Q 042671 10 NTRGYFTWSFLDLFELLGGYEWSYGLYYVDRDDPGLKRYPKLSAHW 55 (88)
Q Consensus 10 ~v~GY~~WSl~DnfEW~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~ 55 (88)
.|.|.+.|.+.|..+|..+ .+-||+.-|. +||++.++
T Consensus 217 ~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~-------~~kpa~~~ 253 (254)
T smart00633 217 AVTGVTVWGVTDKYSWLDG--GAPLLFDANY-------QPKPAYWA 253 (254)
T ss_pred CeeEEEEeCCccCCcccCC--CCceeECCCC-------CCChhhhc
Confidence 7899999999999999776 4567864333 56776654
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=77.74 E-value=4.6 Score=33.20 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=34.0
Q ss_pred HhcCCceeEEEeeecchhccccCCCc----eeeeeEEEcCCCCCcceeecchHHHHHHHHhc
Q 042671 5 VRNESNTRGYFTWSFLDLFELLGGYE----WSYGLYYVDRDDPGLKRYPKLSAHWYSRFLKG 62 (88)
Q Consensus 5 i~dGv~v~GY~~WSl~DnfEW~~Gy~----~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~~ 62 (88)
+++--.+.|-|+|.++|- .+..|.. ...||+. ..|.||++++.|+...+.
T Consensus 541 ~~~~p~~~G~~iW~~~D~-~~~~g~~~~~g~~~Gl~~-------~dr~~k~~~~~~k~~~~~ 594 (604)
T PRK10150 541 FDRVPAVVGEQVWNFADF-ATSQGILRVGGNKKGIFT-------RDRQPKSAAFLLKKRWTG 594 (604)
T ss_pred HhcCCceEEEEEEeeecc-CCCCCCcccCCCcceeEc-------CCCCChHHHHHHHHHhhc
Confidence 444457899999999993 2222211 3557753 357899999999998864
No 17
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=77.27 E-value=1.9 Score=32.98 Aligned_cols=42 Identities=17% Similarity=0.084 Sum_probs=28.1
Q ss_pred ceeEEEeeecchhccccCCCce-eeeeEEEcCCCCCcceeecchHHHHHH
Q 042671 10 NTRGYFTWSFLDLFELLGGYEW-SYGLYYVDRDDPGLKRYPKLSAHWYSR 58 (88)
Q Consensus 10 ~v~GY~~WSl~DnfEW~~Gy~~-RfGL~~VD~~~~~~~R~pK~Sa~~y~~ 58 (88)
.|.|.+.|.+.|+.+|...... +=+|+.- .-.||++++.+.+
T Consensus 276 ~v~git~Wg~~D~~sW~~~~~~~~~~lfd~-------~~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 276 AVEGITWWGFTDGYSWRPDTPPDRPLLFDE-------DYQPKPAYDAIVD 318 (320)
T ss_dssp TEEEEEESSSBTTGSTTGGHSEG--SSB-T-------TSBB-HHHHHHHH
T ss_pred CCCEEEEECCCCCCcccCCCCCCCCeeECC-------CcCCCHHHHHHHh
Confidence 8999999999999999776322 3334422 2367888877654
No 18
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=61.53 E-value=10 Score=28.08 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=29.3
Q ss_pred CceeEEEeeecchhcc-ccCCCceeeeeEEEcCCCCCcceeecchHHHHHHHHh
Q 042671 9 SNTRGYFTWSFLDLFE-LLGGYEWSYGLYYVDRDDPGLKRYPKLSAHWYSRFLK 61 (88)
Q Consensus 9 v~v~GY~~WSl~DnfE-W~~Gy~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~ii~ 61 (88)
-.+.|-++|+..|-.. -..+-..-.||+.- .|+||++++.|+++-.
T Consensus 248 ~~~~g~~~w~~~Df~~~~~~~~~~~nGlv~~-------dR~pK~~~~~~k~~~~ 294 (298)
T PF02836_consen 248 PYVAGEFYWTGFDFGTEPTDYEFEYNGLVDY-------DRRPKPAYYEYKSQWS 294 (298)
T ss_dssp TTESEEEEEETTTTSCSSBTGGGGSBESBET-------TSEBBHHHHHHHHHHH
T ss_pred ccccceeeecceEeccCCCCCeeeeccEECC-------cCCcCHHHHHHHHHhh
Confidence 3467889999988543 11111112377543 4689999999998764
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=39.71 E-value=28 Score=28.03 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=26.1
Q ss_pred hcCCceeEEEeeecchhccccCC----CceeeeeEEEcCCCCCcceeecchHHHHHHH
Q 042671 6 RNESNTRGYFTWSFLDLFELLGG----YEWSYGLYYVDRDDPGLKRYPKLSAHWYSRF 59 (88)
Q Consensus 6 ~dGv~v~GY~~WSl~DnfEW~~G----y~~RfGL~~VD~~~~~~~R~pK~Sa~~y~~i 59 (88)
.+|..+-++..|++.|.||=..- +-.-|||+..+ .++|++.+.|.-+
T Consensus 309 ~~~~~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~-------gI~KPa~~A~~~L 359 (486)
T PF01229_consen 309 NDGAFLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKL-------GIPKPAYYAFQLL 359 (486)
T ss_dssp HGGGT-SEEEES-SBS---TTSS-SSSSSS-S-SEECC-------CEE-HHHHHHHHH
T ss_pred hhhhhhhhhhccchhhhhhccCCCCCceecchhhhhcc-------CCCchHHHHHHHH
Confidence 35666777888999999983211 33458887755 4889988777644
No 20
>PRK13251 transcription attenuation protein MtrB; Provisional
Probab=37.29 E-value=7.8 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=11.9
Q ss_pred ChHHHhcCCceeEEE
Q 042671 1 MLDAVRNESNTRGYF 15 (88)
Q Consensus 1 v~kAi~dGv~v~GY~ 15 (88)
|.||.++||+|.|-+
T Consensus 11 vIkA~e~gV~vIglt 25 (75)
T PRK13251 11 VIKALENGVNVIGLT 25 (75)
T ss_pred EEEEecCCeEEEEEe
Confidence 357889999999863
No 21
>PF02081 TrpBP: Tryptophan RNA-binding attenuator protein; InterPro: IPR023558 The tryptophan RNA-binding attenuation protein (TRAP) regulates expression of the tryptophan biosynthetic genes in Bacillus sp. by binding to the leader region of the nascent trp operon mRNA []. The crystal structure of the Trp RNA-binding attenuation protein of Bacillus subtilis has been solved []. TRAP forms an oligomeric ring consisting of 11 single-domain subunits, where each subunit adopts a double-stranded beta-helix structure with the appearance of a beta-sandwich of distinct architecture and jelly-roll fold. The 11 subunits are stabilised by 11 inter-subunit strands, forming a beta-wheel with a large central hole. TRAP is activated by binding to tryptophan in clefts between adjacent beta-strands, which induces conformational changes in the protein. Activated TRAP binds an mRNA target sequence consisting of 11 (G/U)AG repeats, separated by 2-3 spacer nucleotides. The spacer nucleotides do not make direct contact with the TRAP protein, but they do influence the conformation of the RNA, which might influence the specificity of TRAP []. This entry represents the structural domain in the TRAP family of proteins.; PDB: 3ZTE_U 1GTN_H 1UTD_D 1GTF_D 1UTF_F 2ZP9_K 1C9S_Q 2EXT_A 3AQD_T 1QAW_C ....
Probab=30.00 E-value=8.3 Score=24.36 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=11.3
Q ss_pred hHHHhcCCceeEEE
Q 042671 2 LDAVRNESNTRGYF 15 (88)
Q Consensus 2 ~kAi~dGv~v~GY~ 15 (88)
.||.++||+|.|-.
T Consensus 12 IkA~e~gV~ViGlT 25 (75)
T PF02081_consen 12 IKALENGVTVIGLT 25 (75)
T ss_dssp EEESSTTEEEEEEE
T ss_pred EEEecCCeEEEEEe
Confidence 47888999998864
No 22
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=20.10 E-value=59 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=21.9
Q ss_pred EcCCCCCcceeecchHHHHHHHHhcCC
Q 042671 38 VDRDDPGLKRYPKLSAHWYSRFLKGRS 64 (88)
Q Consensus 38 VD~~~~~~~R~pK~Sa~~y~~ii~~~~ 64 (88)
.|++.+.+.+||+.-++.|.++++.-+
T Consensus 14 eD~~regL~~TP~Rva~~~~e~~~G~~ 40 (180)
T TIGR00063 14 EDLNREGLLETPKRVAKMYVEIFSGYD 40 (180)
T ss_pred CCCCccchhhCHHHHHHHHHHHHhccc
Confidence 366666789999999999999988643
Done!