BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042673
         (280 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B0US27|GPMA_HAES2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
           OS=Haemophilus somnus (strain 2336) GN=gpmA PE=3 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 22/47 (46%)

Query: 180 LLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLVRCIMMC 226
           L  G R   + +R   E+K   KKL E GY   I FT  L R I  C
Sbjct: 18  LFTGWRDVNLTERGIEEAKAAGKKLLEAGYEFDIAFTSVLTRAIKTC 64


>sp|Q0I4D8|GPMA_HAES1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
           OS=Haemophilus somnus (strain 129Pt) GN=gpmA PE=3 SV=1
          Length = 227

 Score = 35.4 bits (80), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 22/47 (46%)

Query: 180 LLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFTCFLVRCIMMC 226
           L  G R   + +R   E+K   KKL E GY   I FT  L R I  C
Sbjct: 18  LFTGWRDVNLTERGIEEAKAAGKKLLEAGYEFDIAFTSVLTRAIKTC 64


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.335    0.146    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,392,173
Number of Sequences: 539616
Number of extensions: 3620346
Number of successful extensions: 12654
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12652
Number of HSP's gapped (non-prelim): 7
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 60 (27.7 bits)