Query 042673
Match_columns 280
No_of_seqs 127 out of 178
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 14:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_J Ubiquinol-cytochrome C 11.3 66 0.0023 22.3 0.6 15 10-24 40-54 (62)
2 2lx0_A Membrane fusion protein 11.1 2.7E+02 0.0093 16.2 3.6 20 173-192 12-31 (32)
3 1xok_C Coat protein; protein-R 10.9 53 0.0018 18.4 -0.0 12 268-279 13-24 (26)
4 2z73_A Rhodopsin; visual pigme 10.0 8.6E+02 0.029 21.3 8.7 21 23-43 30-50 (448)
5 2l9u_A Receptor tyrosine-prote 9.7 3E+02 0.01 16.9 3.1 17 169-185 17-33 (40)
6 3rlb_A THIT; S-component, ECF 8.8 1.4E+02 0.0049 25.0 1.9 56 214-269 124-185 (192)
7 3cx5_I Cytochrome B-C1 complex 7.8 1.1E+02 0.0037 21.4 0.6 15 10-24 36-50 (65)
8 2k4f_A T-cell surface glycopro 7.2 1.8E+02 0.0063 19.5 1.4 14 267-280 29-42 (57)
9 1kf6_D Fumarate reductase 13 k 6.1 2.7E+02 0.0094 21.7 2.1 21 24-44 98-118 (119)
10 2vof_B BCL-2-binding component 5.8 1.1E+02 0.0037 17.5 -0.2 7 11-17 3-9 (26)
No 1
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=11.26 E-value=66 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.749 Sum_probs=13.3
Q ss_pred ccccchhcCCcchhh
Q 042673 10 SNWWHDVNESPLWQD 24 (280)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (280)
-.||+..|+...|.+
T Consensus 40 d~iw~~~NkGKlwkD 54 (62)
T 1pp9_J 40 DAIYEHINEGKLWKH 54 (62)
T ss_dssp HHHHHHHTTTTSHHH
T ss_pred HHHHHhccCCCCccc
Confidence 479999999999975
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.06 E-value=2.7e+02 Score=16.17 Aligned_cols=20 Identities=50% Similarity=0.683 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 042673 173 LFAALGFLLYGGRLFLMLQR 192 (280)
Q Consensus 173 li~a~~F~~yG~~L~~~lr~ 192 (280)
+++-+.|+-+|..+|+-+.+
T Consensus 12 lvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 12 LVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44455677788888887753
No 3
>1xok_C Coat protein; protein-RNA complex, alpha helix, atypical RNA duplex, viral RNA complex; 3.00A {Synthetic} SCOP: j.9.7.1
Probab=10.89 E-value=53 Score=18.38 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=7.3
Q ss_pred CCCCCCCCCcCC
Q 042673 268 PPKRGITQYHPI 279 (280)
Q Consensus 268 p~~~~~~~~~~~ 279 (280)
+|+.+|++|..+
T Consensus 13 kptkrsqnyaal 24 (26)
T 1xok_C 13 KPTKRSQNYAAL 24 (26)
T ss_pred CCcccchhhHhh
Confidence 455566777654
No 4
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=10.04 E-value=8.6e+02 Score=21.32 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 042673 23 QDRIFHVLAALYGLVAAVALV 43 (280)
Q Consensus 23 ~~~l~~~La~iy~lv~~~a~~ 43 (280)
.+...+.+++++.+++++|++
T Consensus 30 ~~~~~~~~~i~~~ii~i~gi~ 50 (448)
T 2z73_A 30 PDAVYYSLGIFIGICGIIGCG 50 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 455788888888888877743
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=9.73 E-value=3e+02 Score=16.86 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042673 169 AAVSLFAALGFLLYGGR 185 (280)
Q Consensus 169 a~isli~a~~F~~yG~~ 185 (280)
++++++.|..|+|.-+|
T Consensus 17 ~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEccc
Confidence 66778888888887554
No 6
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=8.78 E-value=1.4e+02 Score=24.96 Aligned_cols=56 Identities=13% Similarity=0.234 Sum_probs=27.4
Q ss_pred hhhhhhHhHhhhhhh--ccccCCCCCCcchhHHHHHH---HHHHHHHhHHHHHhh-hccCCC
Q 042673 214 CFTCFLVRCIMMCFN--AFDKAADLDVLDHPVLNFIY---YLLVEILPSTLVLFI-LRKLPP 269 (280)
Q Consensus 214 c~~cF~~r~i~~~~~--~~~~~~~~~~~~~~~~~~iy---y~i~EiiPs~lvLy~-~r~~p~ 269 (280)
+.++...|.+.-.++ .+..+..++..+-++.++.| |.+.|.+=++.++.. +++.|+
T Consensus 124 ~~ig~~~r~~~~~isgvvff~~yaP~g~~~~~ySl~~N~~~~l~~~ii~~iv~~lL~k~~~~ 185 (192)
T 3rlb_A 124 TFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPK 185 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444555555444433 12322223334344444443 567777776666654 455554
No 7
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=7.84 E-value=1.1e+02 Score=21.39 Aligned_cols=15 Identities=33% Similarity=1.121 Sum_probs=13.2
Q ss_pred ccccchhcCCcchhh
Q 042673 10 SNWWHDVNESPLWQD 24 (280)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (280)
-.||+..|++..|.+
T Consensus 36 d~iw~~~NkGKlwkD 50 (65)
T 3cx5_I 36 TSWYENHNKGKLWKD 50 (65)
T ss_dssp HHHHHHHTTTTSHHH
T ss_pred HHHHHhccCCCCccc
Confidence 379999999999975
No 8
>2k4f_A T-cell surface glycoprotein CD3 epsilon chain; ITAM, TCR, membrane bound protein, bicelle, immunoglobulin domain, membrane, phosphoprotein; NMR {Mus musculus}
Probab=7.18 E-value=1.8e+02 Score=19.46 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=8.8
Q ss_pred CCCCCCCCCCcCCC
Q 042673 267 LPPKRGITQYHPIR 280 (280)
Q Consensus 267 ~p~~~~~~~~~~~~ 280 (280)
-||.-.++.|.||+
T Consensus 29 rpPPVPNPDYEpIR 42 (57)
T 2k4f_A 29 RPPPVPNPDYEPIR 42 (57)
T ss_dssp CCCCCCSGGGCTTC
T ss_pred CCCCCCCCCcchhh
Confidence 34444567788875
No 9
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=6.12 E-value=2.7e+02 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 042673 24 DRIFHVLAALYGLVAAVALVQ 44 (280)
Q Consensus 24 ~~l~~~La~iy~lv~~~a~~Q 44 (280)
.-..|++|+++.++++++.++
T Consensus 98 ~~~~Yg~A~l~sv~~~~~v~~ 118 (119)
T 1kf6_D 98 KWVFYGLAAILTVVTLIGVVT 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHHHHHHhee
Confidence 448999999999999988765
No 10
>2vof_B BCL-2-binding component 3; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2roc_B
Probab=5.83 E-value=1.1e+02 Score=17.47 Aligned_cols=7 Identities=14% Similarity=0.871 Sum_probs=4.1
Q ss_pred cccchhc
Q 042673 11 NWWHDVN 17 (280)
Q Consensus 11 ~~~~~~~ 17 (280)
+||+++.
T Consensus 3 ~w~R~~~ 9 (26)
T 2vof_B 3 EWAREIG 9 (26)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5666653
Done!