Query 042673
Match_columns 280
No_of_seqs 127 out of 178
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 14:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042673.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042673hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5i1 f.23.14.1 (I:4-58) Sub 18.2 15 0.0011 23.3 0.6 17 9-25 33-49 (55)
2 d1kf6d_ f.21.2.2 (D:) Fumarate 14.5 40 0.0029 24.5 2.1 22 23-44 97-118 (119)
3 d1ppjw_ f.23.14.1 (W:) Subunit 12.3 27 0.002 22.6 0.6 16 9-24 39-54 (62)
4 d2qfia2 f.59.1.1 (A:5-208) Fer 6.0 87 0.0063 23.7 1.2 17 251-267 43-59 (204)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 6.0 2.3E+02 0.017 15.2 2.8 16 26-41 17-32 (34)
6 d1u19a_ f.13.1.2 (A:) Rhodopsi 5.2 6E+02 0.043 19.0 6.7 18 26-43 36-53 (348)
7 d1e12a_ f.13.1.1 (A:) Halorhod 4.0 6.4E+02 0.046 19.2 5.5 33 12-44 126-158 (239)
8 d1ppjj_ f.23.14.1 (J:) Subunit 3.1 1.8E+02 0.013 16.2 0.6 14 11-24 12-25 (33)
9 d1kf6c_ f.21.2.2 (C:) Fumarate 2.9 2.7E+02 0.02 20.1 1.8 8 10-17 13-20 (130)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 2.9 3.7E+02 0.027 14.4 1.9 11 109-119 16-26 (33)
No 1
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.23 E-value=15 Score=23.35 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=14.3
Q ss_pred cccccchhcCCcchhhH
Q 042673 9 ASNWWHDVNESPLWQDR 25 (280)
Q Consensus 9 ~~~~~~~~~~~~~~~~~ 25 (280)
.-.|||..|+...|.+.
T Consensus 33 ~d~~we~~NkGKlWkDI 49 (55)
T d3cx5i1 33 ITSWYENHNKGKLWKDV 49 (55)
T ss_dssp HHHHHHHHTTTTSHHHH
T ss_pred HHHHHHhccCcccHHHH
Confidence 34799999999999763
No 2
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=14.50 E-value=40 Score=24.55 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 042673 23 QDRIFHVLAALYGLVAAVALVQ 44 (280)
Q Consensus 23 ~~~l~~~La~iy~lv~~~a~~Q 44 (280)
..-++|++|+++.++++++++|
T Consensus 97 g~~~fYg~A~l~sv~~~~~v~~ 118 (119)
T d1kf6d_ 97 GKWVFYGLAAILTVVTLIGVVT 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 3458999999999999999876
No 3
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.30 E-value=27 Score=22.64 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=13.8
Q ss_pred cccccchhcCCcchhh
Q 042673 9 ASNWWHDVNESPLWQD 24 (280)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (280)
.-.|||..|++..|.+
T Consensus 39 ~d~iwe~~NkGKlWKD 54 (62)
T d1ppjw_ 39 ADAIYEHINEGKLWKH 54 (62)
T ss_dssp HHHHHHHHTTTTSHHH
T ss_pred HHHHHHhcccccchHH
Confidence 4479999999999975
No 4
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}
Probab=6.01 E-value=87 Score=23.74 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=13.0
Q ss_pred HHHHHhHHHHHhhhccC
Q 042673 251 LVEILPSTLVLFILRKL 267 (280)
Q Consensus 251 i~EiiPs~lvLy~~r~~ 267 (280)
..+++.++..++..|..
T Consensus 43 ~~D~~~~~~~l~~~~~s 59 (204)
T d2qfia2 43 LVDIGASLTNLLVVRYS 59 (204)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 67788888888877753
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=6.00 E-value=2.3e+02 Score=15.21 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 042673 26 IFHVLAALYGLVAAVA 41 (280)
Q Consensus 26 l~~~La~iy~lv~~~a 41 (280)
+-+.||.+|..+++++
T Consensus 17 lafslamlfvfialia 32 (34)
T d1xmeb2 17 LAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5677888888887765
No 6
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.18 E-value=6e+02 Score=19.00 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042673 26 IFHVLAALYGLVAAVALV 43 (280)
Q Consensus 26 l~~~La~iy~lv~~~a~~ 43 (280)
.+..+++++.+++++|++
T Consensus 36 ~~~~~~~~~~ii~v~gi~ 53 (348)
T d1u19a_ 36 QFSMLAAYMFLLIMLGFP 53 (348)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777766643
No 7
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=3.98 E-value=6.4e+02 Score=19.17 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=18.7
Q ss_pred ccchhcCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 042673 12 WWHDVNESPLWQDRIFHVLAALYGLVAAVALVQ 44 (280)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~La~iy~lv~~~a~~Q 44 (280)
+=.|..+++.-..-.+++.+.++.+.-++.+..
T Consensus 126 ~~ge~~~~~~~~~w~~~~i~~~~~~~i~y~l~~ 158 (239)
T d1e12a_ 126 LAAAMTTSALLFRWAFYAISCAFFVVVLSALVT 158 (239)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555554333336777777777666655443
No 8
>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.05 E-value=1.8e+02 Score=16.16 Aligned_cols=14 Identities=29% Similarity=0.790 Sum_probs=10.9
Q ss_pred cccchhcCCcchhh
Q 042673 11 NWWHDVNESPLWQD 24 (280)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (280)
.=|+.+|+...|-+
T Consensus 12 ~i~d~~NkGklWKd 25 (33)
T d1ppjj_ 12 AIYEHINEGKLWKH 25 (33)
T ss_dssp HHHHHHTTTTSHHH
T ss_pred HHHHHhcccchHHH
Confidence 45888999998854
No 9
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=2.95 E-value=2.7e+02 Score=20.13 Aligned_cols=8 Identities=38% Similarity=1.377 Sum_probs=5.4
Q ss_pred ccccchhc
Q 042673 10 SNWWHDVN 17 (280)
Q Consensus 10 ~~~~~~~~ 17 (280)
.+||.+-+
T Consensus 13 ~~WW~k~~ 20 (130)
T d1kf6c_ 13 STWWKKLP 20 (130)
T ss_dssp TTGGGSSH
T ss_pred chHhhcCc
Confidence 47997644
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=2.88 E-value=3.7e+02 Score=14.35 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 042673 109 ALLVLFWAEIY 119 (280)
Q Consensus 109 tllllfWaeiy 119 (280)
..+++||-.+|
T Consensus 16 l~ilvfw~gv~ 26 (33)
T d1xmec1 16 LTILVFWLGVY 26 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Done!