Query 042677
Match_columns 504
No_of_seqs 169 out of 1597
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:26:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1E-103 2E-108 824.7 52.4 480 1-502 56-537 (539)
2 PLN02991 oxidoreductase 100.0 2E-103 4E-108 818.4 51.7 479 1-501 55-535 (543)
3 PLN00044 multi-copper oxidase- 100.0 3E-103 7E-108 820.9 52.9 492 1-501 56-559 (596)
4 PLN02792 oxidoreductase 100.0 4E-103 9E-108 817.4 52.7 482 1-501 43-528 (536)
5 PLN02354 copper ion binding / 100.0 7E-103 1E-107 819.8 50.9 485 1-501 54-543 (552)
6 PLN02168 copper ion binding / 100.0 9E-103 2E-107 815.0 51.7 479 1-498 53-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 3.2E-97 7E-102 766.9 52.1 490 1-501 55-560 (563)
8 TIGR03389 laccase laccase, pla 100.0 2.5E-95 5E-100 768.6 54.2 485 1-496 30-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 8.9E-94 1.9E-98 756.2 51.3 476 1-501 50-566 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 4.7E-93 1E-97 750.7 51.3 472 1-497 28-539 (541)
11 PLN02604 oxidoreductase 100.0 8.5E-92 1.8E-96 743.0 52.5 476 1-500 51-565 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.2E-90 2.7E-95 730.1 49.3 459 1-481 35-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.6E-73 5.7E-78 597.5 44.1 404 1-476 72-586 (587)
14 PRK10965 multicopper oxidase; 100.0 2E-73 4.2E-78 594.6 40.8 416 1-477 73-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.2E-71 4.9E-76 574.4 39.0 379 1-479 73-470 (471)
16 COG2132 SufI Putative multicop 100.0 1.6E-58 3.4E-63 481.2 38.2 385 1-477 60-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2E-43 4.2E-48 347.5 20.0 235 1-258 55-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 6.1E-32 1.3E-36 227.2 7.4 94 1-94 22-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.7E-31 8.1E-36 231.7 12.2 109 370-478 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 7E-28 1.5E-32 215.5 15.4 152 106-257 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 4.1E-18 8.8E-23 148.7 9.4 90 2-92 49-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.1E-14 2.5E-19 143.6 22.9 245 139-477 48-296 (311)
23 TIGR01480 copper_res_A copper- 99.5 2.5E-13 5.5E-18 144.0 17.7 217 5-236 260-573 (587)
24 PLN02835 oxidoreductase 99.2 1E-09 2.2E-14 116.3 17.7 229 4-236 201-498 (539)
25 PRK10965 multicopper oxidase; 99.2 1.1E-09 2.4E-14 115.5 17.9 90 141-236 414-509 (523)
26 TIGR03389 laccase laccase, pla 99.1 3E-09 6.4E-14 113.4 20.7 239 139-462 23-264 (539)
27 TIGR03388 ascorbase L-ascorbat 99.1 4.8E-09 1E-13 111.8 19.0 227 6-236 204-510 (541)
28 COG2132 SufI Putative multicop 99.0 3.8E-09 8.3E-14 110.6 15.0 218 6-236 200-435 (451)
29 PLN02604 oxidoreductase 99.0 1.3E-08 2.9E-13 108.9 17.9 227 5-236 224-533 (566)
30 PLN02354 copper ion binding / 99.0 3.2E-08 7E-13 105.1 19.7 234 139-461 47-283 (552)
31 PLN02792 oxidoreductase 99.0 3.6E-08 7.7E-13 104.3 19.9 227 139-459 36-267 (536)
32 PLN02168 copper ion binding / 99.0 4.5E-08 9.8E-13 103.6 20.1 220 139-452 46-267 (545)
33 PLN02991 oxidoreductase 98.9 5.6E-08 1.2E-12 102.7 19.5 223 139-456 48-273 (543)
34 PRK10883 FtsI repressor; Provi 98.9 1.1E-07 2.4E-12 99.5 21.6 228 139-460 66-295 (471)
35 PF07731 Cu-oxidase_2: Multico 98.8 3.1E-08 6.8E-13 86.3 11.3 78 157-236 33-121 (138)
36 TIGR03390 ascorbOXfungal L-asc 98.8 2.5E-07 5.5E-12 98.5 19.9 241 139-459 28-280 (538)
37 PLN00044 multi-copper oxidase- 98.8 3E-07 6.6E-12 97.9 20.3 237 139-457 49-291 (596)
38 TIGR03096 nitroso_cyanin nitro 98.8 1.3E-08 2.8E-13 86.0 7.3 62 2-78 58-121 (135)
39 PLN02191 L-ascorbate oxidase 98.8 3.7E-07 8.1E-12 97.7 18.7 225 6-236 227-533 (574)
40 PF07732 Cu-oxidase_3: Multico 98.7 4.8E-08 1E-12 82.2 8.9 90 376-479 26-116 (117)
41 KOG1263 Multicopper oxidases [ 98.4 2.3E-05 5E-10 82.9 20.4 234 139-461 48-286 (563)
42 TIGR02656 cyanin_plasto plasto 98.2 5.5E-06 1.2E-10 67.6 8.1 82 4-92 16-99 (99)
43 PF00394 Cu-oxidase: Multicopp 98.2 1.1E-05 2.3E-10 72.1 9.5 93 375-478 59-157 (159)
44 PRK02710 plastocyanin; Provisi 98.0 2.6E-05 5.6E-10 65.9 8.4 74 4-92 46-119 (119)
45 PF13473 Cupredoxin_1: Cupredo 98.0 1.7E-05 3.6E-10 65.4 6.2 70 5-91 35-104 (104)
46 TIGR03095 rusti_cyanin rusticy 97.9 5.4E-05 1.2E-09 66.3 9.3 87 377-476 53-147 (148)
47 PF00127 Copper-bind: Copper b 97.9 1.6E-05 3.4E-10 64.9 5.6 77 4-92 16-99 (99)
48 TIGR02657 amicyanin amicyanin. 97.8 8.5E-05 1.8E-09 58.4 7.8 74 4-92 10-83 (83)
49 PRK02888 nitrous-oxide reducta 97.7 8.5E-05 1.9E-09 78.4 7.5 79 5-93 555-634 (635)
50 TIGR03096 nitroso_cyanin nitro 97.6 0.00036 7.7E-09 59.3 7.9 59 377-462 62-120 (135)
51 TIGR02656 cyanin_plasto plasto 97.5 0.00044 9.6E-09 56.3 8.0 82 376-476 17-98 (99)
52 COG3794 PetE Plastocyanin [Ene 97.4 0.00064 1.4E-08 57.3 8.0 75 5-93 54-128 (128)
53 TIGR02375 pseudoazurin pseudoa 97.3 0.0012 2.6E-08 55.1 8.1 76 4-95 14-90 (116)
54 PF06525 SoxE: Sulfocyanin (So 97.2 0.0025 5.4E-08 57.4 8.9 90 4-94 85-188 (196)
55 TIGR03094 sulfo_cyanin sulfocy 97.1 0.0043 9.4E-08 54.7 9.6 89 5-94 85-187 (195)
56 PF13473 Cupredoxin_1: Cupredo 96.9 0.0048 1E-07 50.7 8.2 60 377-463 36-95 (104)
57 PF00127 Copper-bind: Copper b 96.6 0.027 5.9E-07 45.7 10.4 82 376-477 17-99 (99)
58 TIGR03102 halo_cynanin halocya 96.6 0.01 2.2E-07 49.5 7.6 72 5-92 42-115 (115)
59 PRK02888 nitrous-oxide reducta 96.5 0.012 2.6E-07 62.6 9.1 74 377-477 556-633 (635)
60 PRK02710 plastocyanin; Provisi 95.8 0.047 1E-06 46.0 7.8 70 378-476 49-118 (119)
61 PF06525 SoxE: Sulfocyanin (So 95.4 0.081 1.8E-06 47.8 8.1 88 140-236 75-172 (196)
62 TIGR02657 amicyanin amicyanin. 95.3 0.099 2.1E-06 40.9 7.6 71 377-476 12-82 (83)
63 TIGR02375 pseudoazurin pseudoa 94.6 0.23 4.9E-06 41.5 8.1 79 375-482 14-92 (116)
64 COG4454 Uncharacterized copper 93.7 0.19 4E-06 43.6 6.1 75 158-236 63-143 (158)
65 PF00116 COX2: Cytochrome C ox 93.3 1.5 3.3E-05 36.9 11.0 75 375-477 45-120 (120)
66 PF00116 COX2: Cytochrome C ox 93.2 0.98 2.1E-05 38.0 9.7 60 158-236 46-105 (120)
67 TIGR02695 azurin azurin. Azuri 93.2 0.42 9.1E-06 40.0 7.1 83 5-90 16-124 (125)
68 COG4454 Uncharacterized copper 92.7 0.4 8.6E-06 41.6 6.6 93 378-477 65-157 (158)
69 TIGR03102 halo_cynanin halocya 92.4 0.82 1.8E-05 38.1 8.0 73 377-477 43-115 (115)
70 TIGR02866 CoxB cytochrome c ox 91.7 0.75 1.6E-05 42.6 7.8 77 376-480 117-194 (201)
71 TIGR02695 azurin azurin. Azuri 90.6 2.5 5.4E-05 35.5 8.9 79 157-235 15-112 (125)
72 COG3794 PetE Plastocyanin [Ene 87.8 3.3 7.2E-05 35.1 7.9 74 377-478 55-128 (128)
73 PRK10378 inactive ferrous ion 85.9 3.6 7.9E-05 41.6 8.4 73 5-94 44-118 (375)
74 COG1622 CyoA Heme/copper-type 84.8 4.1 9E-05 38.9 7.8 79 375-481 136-215 (247)
75 COG4263 NosZ Nitrous oxide red 83.9 1.8 3.9E-05 44.0 5.1 42 50-92 594-636 (637)
76 TIGR02866 CoxB cytochrome c ox 78.3 9.1 0.0002 35.4 7.6 60 158-236 117-176 (201)
77 COG1622 CyoA Heme/copper-type 78.1 8.1 0.00018 36.9 7.2 77 5-95 137-214 (247)
78 PF12690 BsuPI: Intracellular 76.8 12 0.00025 29.2 6.6 65 168-233 4-82 (82)
79 MTH00140 COX2 cytochrome c oxi 75.4 12 0.00026 35.4 7.5 78 375-480 139-217 (228)
80 PF04151 PPC: Bacterial pre-pe 71.5 28 0.0006 25.8 7.4 65 158-234 5-69 (70)
81 PRK10378 inactive ferrous ion 71.1 30 0.00065 35.2 9.5 63 157-235 43-105 (375)
82 MTH00047 COX2 cytochrome c oxi 68.3 38 0.00082 31.1 8.9 76 377-480 117-193 (194)
83 TIGR01433 CyoA cytochrome o ub 68.2 18 0.00038 34.2 6.9 76 377-480 140-216 (226)
84 PF12690 BsuPI: Intracellular 65.4 13 0.00027 29.0 4.4 59 14-72 3-79 (82)
85 TIGR03094 sulfo_cyanin sulfocy 65.0 68 0.0015 28.9 9.3 96 376-478 85-186 (195)
86 TIGR01432 QOXA cytochrome aa3 63.7 23 0.00049 33.2 6.7 77 377-481 131-208 (217)
87 PF07705 CARDB: CARDB; InterP 63.7 69 0.0015 25.0 9.1 67 160-235 13-83 (101)
88 PTZ00047 cytochrome c oxidase 63.5 43 0.00092 29.7 7.8 76 377-480 74-150 (162)
89 MTH00129 COX2 cytochrome c oxi 63.0 26 0.00056 33.1 7.0 78 375-480 139-217 (230)
90 PF05938 Self-incomp_S1: Plant 62.7 21 0.00047 29.2 5.7 69 16-94 2-71 (110)
91 PF01835 A2M_N: MG2 domain; I 61.7 23 0.00051 28.2 5.7 70 161-236 10-86 (99)
92 PF14344 DUF4397: Domain of un 60.3 97 0.0021 25.6 10.8 22 168-189 2-24 (122)
93 MTH00098 COX2 cytochrome c oxi 59.2 39 0.00084 31.9 7.4 77 376-480 140-217 (227)
94 PF10633 NPCBM_assoc: NPCBM-as 58.5 78 0.0017 23.9 7.9 65 162-235 1-75 (78)
95 MTH00185 COX2 cytochrome c oxi 58.1 47 0.001 31.4 7.7 78 375-480 139-217 (230)
96 PF05506 DUF756: Domain of unk 56.4 66 0.0014 25.1 7.3 64 3-74 7-73 (89)
97 MTH00008 COX2 cytochrome c oxi 55.3 52 0.0011 31.1 7.5 78 375-480 139-217 (228)
98 smart00758 PA14 domain in bact 52.3 1.3E+02 0.0027 25.4 9.0 63 160-227 52-115 (136)
99 PF07691 PA14: PA14 domain; I 51.4 1E+02 0.0022 26.1 8.5 61 159-224 53-120 (145)
100 MTH00117 COX2 cytochrome c oxi 50.8 71 0.0015 30.1 7.7 78 375-480 139-217 (227)
101 MTH00047 COX2 cytochrome c oxi 49.7 68 0.0015 29.4 7.2 60 158-236 116-175 (194)
102 PF14874 PapD-like: Flagellar- 49.5 1.3E+02 0.0028 23.8 9.1 59 161-230 15-81 (102)
103 COG2967 ApaG Uncharacterized p 47.7 22 0.00049 29.4 3.2 55 16-70 33-95 (126)
104 PF11614 FixG_C: IG-like fold 47.1 76 0.0016 26.2 6.6 48 167-223 34-83 (118)
105 MTH00076 COX2 cytochrome c oxi 46.1 79 0.0017 29.9 7.2 78 375-480 139-217 (228)
106 MTH00023 COX2 cytochrome c oxi 45.8 90 0.002 29.7 7.6 78 375-480 150-228 (240)
107 MTH00139 COX2 cytochrome c oxi 45.5 67 0.0014 30.3 6.6 79 374-480 138-217 (226)
108 MTH00140 COX2 cytochrome c oxi 45.0 68 0.0015 30.3 6.6 60 158-236 140-199 (228)
109 PF14392 zf-CCHC_4: Zinc knuck 41.3 46 0.001 22.9 3.6 41 428-468 4-45 (49)
110 MTH00038 COX2 cytochrome c oxi 40.8 1.2E+02 0.0025 28.7 7.5 78 375-480 139-217 (229)
111 PF04379 DUF525: Protein of un 40.3 72 0.0016 25.3 5.0 50 167-219 15-68 (90)
112 MTH00051 COX2 cytochrome c oxi 40.2 1.2E+02 0.0026 28.7 7.5 78 375-480 143-221 (234)
113 COG4263 NosZ Nitrous oxide red 38.5 1.1E+02 0.0023 31.8 7.0 37 435-471 593-633 (637)
114 MTH00154 COX2 cytochrome c oxi 38.1 1.1E+02 0.0023 29.0 6.7 77 376-480 140-217 (227)
115 MTH00008 COX2 cytochrome c oxi 38.0 1.1E+02 0.0025 28.8 6.9 60 158-236 140-199 (228)
116 PF10989 DUF2808: Protein of u 37.7 37 0.0008 29.5 3.4 26 438-463 99-128 (146)
117 TIGR01433 CyoA cytochrome o ub 37.5 99 0.0021 29.1 6.4 60 158-236 139-198 (226)
118 PRK05461 apaG CO2+/MG2+ efflux 36.9 50 0.0011 28.0 3.9 46 16-61 34-85 (127)
119 PTZ00047 cytochrome c oxidase 36.9 1.9E+02 0.0041 25.7 7.5 60 158-236 73-132 (162)
120 MTH00027 COX2 cytochrome c oxi 36.7 96 0.0021 29.9 6.3 78 375-480 173-251 (262)
121 PRK10525 cytochrome o ubiquino 36.3 1.4E+02 0.0031 29.6 7.5 74 377-478 152-226 (315)
122 PF11142 DUF2917: Protein of u 35.4 1.2E+02 0.0026 22.2 5.2 46 160-217 2-47 (63)
123 MTH00098 COX2 cytochrome c oxi 34.8 1.2E+02 0.0027 28.5 6.6 59 158-235 140-198 (227)
124 KOG4387 Ornithine decarboxylas 33.3 19 0.0004 32.1 0.7 28 8-35 72-99 (191)
125 MTH00129 COX2 cytochrome c oxi 33.1 1.2E+02 0.0027 28.5 6.4 59 158-235 140-198 (230)
126 TIGR01432 QOXA cytochrome aa3 31.3 1.4E+02 0.003 27.9 6.3 60 158-236 130-189 (217)
127 PRK05461 apaG CO2+/MG2+ efflux 31.3 1.2E+02 0.0027 25.7 5.4 50 167-219 32-85 (127)
128 PF14524 Wzt_C: Wzt C-terminal 31.2 2.2E+02 0.0048 23.7 7.3 75 158-235 27-107 (142)
129 MTH00080 COX2 cytochrome c oxi 30.3 1.7E+02 0.0037 27.6 6.7 78 375-480 142-220 (231)
130 MTH00051 COX2 cytochrome c oxi 30.3 1.7E+02 0.0037 27.7 6.8 59 158-235 144-202 (234)
131 PRK07440 hypothetical protein; 30.1 27 0.00059 26.1 1.1 31 190-220 35-65 (70)
132 MTH00168 COX2 cytochrome c oxi 29.7 1.9E+02 0.0041 27.2 7.0 79 374-480 138-217 (225)
133 MTH00185 COX2 cytochrome c oxi 29.2 2.1E+02 0.0045 27.1 7.1 60 158-236 140-199 (230)
134 COG1470 Predicted membrane pro 28.5 3.3E+02 0.0071 28.6 8.6 74 158-238 389-470 (513)
135 COG3354 FlaG Putative archaeal 28.1 4E+02 0.0086 23.1 9.1 83 139-235 51-142 (154)
136 PF14326 DUF4384: Domain of un 27.3 2.9E+02 0.0062 21.2 8.8 24 162-185 3-26 (83)
137 cd00918 Der-p2_like Several gr 26.9 2.3E+02 0.0051 23.7 6.3 58 8-65 23-88 (120)
138 cd00916 Npc2_like Niemann-Pick 25.9 2.6E+02 0.0056 23.4 6.5 58 8-65 25-92 (123)
139 MTH00117 COX2 cytochrome c oxi 24.5 3.1E+02 0.0067 25.8 7.4 60 158-236 140-199 (227)
140 PF13464 DUF4115: Domain of un 23.2 2.1E+02 0.0046 21.5 5.0 37 158-197 30-66 (77)
141 COG3241 Azurin [Energy product 22.9 99 0.0021 25.8 3.1 87 140-235 28-136 (151)
142 MTH00154 COX2 cytochrome c oxi 22.5 3.2E+02 0.0069 25.8 7.0 60 158-236 140-199 (227)
143 TIGR02745 ccoG_rdxA_fixG cytoc 22.3 2.8E+02 0.0061 29.0 7.2 49 167-223 349-398 (434)
144 PF03459 TOBE: TOBE domain; I 21.8 94 0.002 22.2 2.7 48 170-223 12-60 (64)
145 PRK10525 cytochrome o ubiquino 21.8 2.1E+02 0.0046 28.4 5.8 60 158-236 151-210 (315)
146 MTH00076 COX2 cytochrome c oxi 21.0 3.2E+02 0.0069 25.8 6.7 59 158-235 140-198 (228)
147 PF10636 hemP: Hemin uptake pr 20.9 1.5E+02 0.0032 19.4 3.0 19 158-176 14-32 (38)
148 KOG4078 Putative mitochondrial 20.4 51 0.0011 28.1 1.0 37 162-200 120-156 (173)
149 PF14016 DUF4232: Protein of u 20.0 5.3E+02 0.011 21.6 8.4 54 167-223 21-81 (131)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.1e-103 Score=824.68 Aligned_cols=480 Identities=47% Similarity=0.789 Sum_probs=384.0
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+||+++||+|+|+|+|+|+++|+|||||++|.+++|+||++++||||+||++|+|+|++++++||||||||.+.|
T Consensus 56 ~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q 135 (539)
T PLN02835 56 QFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFH 135 (539)
T ss_pred cCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccch
Confidence 68999999999999999999999999999999999999999999998899999999999999987789999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCCCCcceE
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNTTEHESF 160 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (504)
+++||+|+|||++++..+.++..+|+|++++++||+++....+...+..+ +..++++.+||||+.. +.+
T Consensus 136 ~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g--~~~~~~d~~liNG~~~---------~~~ 204 (539)
T PLN02835 136 KAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDSG--KVLPFPDGVLINGQTQ---------STF 204 (539)
T ss_pred hcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhcC--CCCCCCceEEEccccC---------ceE
Confidence 99999999999876555556666789999999999998876654444333 2456789999999988 789
Q ss_pred EEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCcC
Q 042677 161 TVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSHA 240 (504)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~~ 240 (504)
+|++|++|||||||++....+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+.
T Consensus 205 ~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~ 284 (539)
T PLN02835 205 SGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQ 284 (539)
T ss_pred EECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999986533222
Q ss_pred CCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCcccee--eeeeeeEEeeeeec
Q 042677 241 DANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFS--EINATFTYLRSKVM 318 (504)
Q Consensus 241 ~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~--~~~~~~~~~~~~l~ 318 (504)
.....|||+|.++..+.+.++|..|.. +.......+....+.+......+ .+...+. ....++++. +.
T Consensus 285 ----~~~~~ail~Y~~~~~~~~~~~p~~p~~-~~~~~~~~~~~~~~~l~~~~~~p--~~~~~~~~~~~~~~~~~~---~~ 354 (539)
T PLN02835 285 ----ILTATAVLHYSNSRTPASGPLPALPSG-ELHWSMRQARTYRWNLTASAARP--NPQGSFHYGKITPTKTIV---LA 354 (539)
T ss_pred ----CcceEEEEEECCCCCCCCCCCCCCCcc-ccccccchhhccccccCccccCC--CCCccccccccCCCceEE---Ee
Confidence 356789999988643222233433311 11111112222222233222222 1111110 122344443 22
Q ss_pred ccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcEEEEEEEeCCCCcc
Q 042677 319 RSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGWIEIVLKNELEVID 398 (504)
Q Consensus 319 ~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~H 398 (504)
......++...|+|||.+|..|+.|+|++.++ +.++.++.++....+.+...+.++.++.+++|++|||+|+|.+...|
T Consensus 355 ~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~H 433 (539)
T PLN02835 355 NSAPLINGKQRYAVNGVSYVNSDTPLKLADYF-GIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQ 433 (539)
T ss_pred ccccccCCeEEEEECCcccCCCCCChhhhhhh-cCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCC
Confidence 21122345678999999999999999887655 45666664432222222234567889999999999999999998899
Q ss_pred eeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEEEEec
Q 042677 399 SWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 399 P~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~ 478 (504)
|||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||+|+|||||+.|+..||+++|.|.+
T Consensus 434 P~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~ 513 (539)
T PLN02835 434 SWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWN 513 (539)
T ss_pred CCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEcc
Confidence 99999999999999999998665556899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCcCCCCC
Q 042677 479 ADPNPNKERPPPENLLLCDGCQSS 502 (504)
Q Consensus 479 ~~~~~~~~~~~p~~~~~c~~~~~~ 502 (504)
+.+...+..++|++++.||.-++.
T Consensus 514 ~~~~~~~~~~~P~~~~~Cg~~~~~ 537 (539)
T PLN02835 514 QVHSLANEYDIPDNALLCGKAIGR 537 (539)
T ss_pred CCCccccccCCCccccccccCccC
Confidence 987776778899999999876653
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=2e-103 Score=818.42 Aligned_cols=479 Identities=47% Similarity=0.800 Sum_probs=386.5
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++||||+||++|+|+|++++|+||||||||.+.|
T Consensus 55 ~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q 134 (543)
T PLN02991 55 KFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFH 134 (543)
T ss_pred CCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchh
Confidence 68999999999999999999999999999999999999999999988899999999999999986789999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCCCCcceE
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNTTEHESF 160 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (504)
+++||+|+|||++++.++.|+..+++|++++|+||+++....+...+.. .+..+++|.+||||++.. +.+
T Consensus 135 ~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~--~~~~~~~d~~liNG~~~~--------~~~ 204 (543)
T PLN02991 135 KAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLDN--GGKLPLPDGILINGRGSG--------ATL 204 (543)
T ss_pred hhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhhc--CCCCCCCCEEEEccCCCC--------ceE
Confidence 9999999999998766666665668899999999999876655443332 235668899999999752 689
Q ss_pred EEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCcC
Q 042677 161 TVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSHA 240 (504)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~~ 240 (504)
+|++|++|||||||++....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|||++...+...
T Consensus 205 ~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~ 284 (543)
T PLN02991 205 NIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTSK 284 (543)
T ss_pred EECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998654322
Q ss_pred CCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCcccee--eeeeeeEEeeeeec
Q 042677 241 DANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFS--EINATFTYLRSKVM 318 (504)
Q Consensus 241 ~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~--~~~~~~~~~~~~l~ 318 (504)
.....|||+|+++..+.+.+.|..|. ...+..++....+..+.+....+ .|...+. ...+++++. +.
T Consensus 285 ----~~~~~AIl~Y~g~~~~~~~~~p~~p~--~~~~~~~~~~~~~~~l~p~~~~~--~p~~~~~~~~~~~~~~~~---~~ 353 (543)
T PLN02991 285 ----ILITTGVLHYSNSAGPVSGPIPDGPI--QLSWSFDQARAIKTNLTASGPRP--NPQGSYHYGKINITRTIR---LA 353 (543)
T ss_pred ----CcceEEEEEeCCCCCCCCCCCCCCCc--cccccccchhhhhhcccCCCCCC--CCCccccccccccceeEE---Ee
Confidence 35678999999875322122333221 11111111111222333211111 2332221 122333333 22
Q ss_pred ccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcEEEEEEEeCCCCcc
Q 042677 319 RSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGWIEIVLKNELEVID 398 (504)
Q Consensus 319 ~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~~H 398 (504)
......++...|+|||.+|..|++|+|++.++ +++|+|+.+..+..+.+......+.++.+++|++|||+|+|.....|
T Consensus 354 ~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~H 432 (543)
T PLN02991 354 NSAGNIEGKQRYAVNSASFYPADTPLKLADYF-KIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQ 432 (543)
T ss_pred ecccccCceEEEEECCCccCCCCCChhhhhhh-cccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCC
Confidence 21111245678999999999999999887666 67788876644443333334456778899999999999999988899
Q ss_pred eeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEEEEec
Q 042677 399 SWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 399 P~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~ 478 (504)
|||||||+||||++|.|.|++.....||+.||++|||+.||++||++|||+|||||+|+|||||..|+..||++++.|.+
T Consensus 433 P~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~ 512 (543)
T PLN02991 433 TWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYT 512 (543)
T ss_pred CeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecC
Confidence 99999999999999999998765567999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCcCCCC
Q 042677 479 ADPNPNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 479 ~~~~~~~~~~~p~~~~~c~~~~~ 501 (504)
+++...+..++|+++++||.-++
T Consensus 513 ~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 513 TSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred CCCccccccCCCcccCccccCCC
Confidence 88877778889999999976544
No 3
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.2e-103 Score=820.90 Aligned_cols=492 Identities=44% Similarity=0.768 Sum_probs=388.6
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+++.||||+||++|+|+|++++|+||||||||.+.|
T Consensus 56 q~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q 135 (596)
T PLN00044 56 QFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALH 135 (596)
T ss_pred cCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhh
Confidence 68999999999999999999999999999999999999999999987799999999999999987799999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCC-CcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCC-----
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKP-EAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNT----- 154 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~-~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~----- 154 (504)
+++||+|+|||++++..+.|+... ++|.+++|+||++++...+...+..+. ..+.++.+||||++.+.+.+.
T Consensus 136 ~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l~~g~--~~~~~d~~lING~g~~~~n~~~~~~~ 213 (596)
T PLN00044 136 RAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRALDAGD--LLGAPDGVLINAFGPYQYNDSLVPPG 213 (596)
T ss_pred hhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHHhcCC--CCCCCCceEEcccCccccCCccccCC
Confidence 999999999999976655565433 379999999999988766554444332 234678999999987543321
Q ss_pred CCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCc-eeEEEE
Q 042677 155 TEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPA-DYYIVA 233 (504)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g-~y~i~~ 233 (504)
...+.++|++|++|||||||++....+.|+|+||+|+|||+||.+++|..+|.|.|++||||||+|+++++++ +|||++
T Consensus 214 ~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a 293 (596)
T PLN00044 214 ITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVA 293 (596)
T ss_pred CccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEE
Confidence 2346899999999999999999999999999999999999999999999999999999999999999998765 899998
Q ss_pred eccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCC-CCCccccccccccccccccccCCCCccCCccceee--eeeee
Q 042677 234 SPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLD-PFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFSE--INATF 310 (504)
Q Consensus 234 ~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~~--~~~~~ 310 (504)
..............+.|||+|.++....+.+.|..+. .++.....+....++.+.......+ .|+..+.. +.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~ 371 (596)
T PLN00044 294 SARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARP--NPQGSFHYGDITVTD 371 (596)
T ss_pred ecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCC--CCcccceeeEEeeee
Confidence 7532111112356778999998865322222344342 3333322222233333232211122 34333221 22222
Q ss_pred EEeeeeecccc-cccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcEEEEE
Q 042677 311 TYLRSKVMRSL-AGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGWIEIV 389 (504)
Q Consensus 311 ~~~~~~l~~~~-~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~iv 389 (504)
.+. +.... ...++...|+|||.+|..|+.|+|++.++ +++++|+.++....|. .....++.+..+++|++|||+
T Consensus 372 ~~~---~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~-~~~gv~~~~fp~~pp~-~~~~~~t~v~~~~~n~~VeiV 446 (596)
T PLN00044 372 VYL---LQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIF-NVPGVFKLDFPNHPMN-RLPKLDTSIINGTYKGFMEII 446 (596)
T ss_pred eee---eccccccccCCeEEEEECcccCCCCCCcchhhhhc-cCCCcccCCCCCCCCc-cccccCceEEEcCCCCEEEEE
Confidence 222 11100 11134678999999999999999887776 7788887764333332 223457888999999999999
Q ss_pred EEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhc
Q 042677 390 LKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLG 469 (504)
Q Consensus 390 i~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~G 469 (504)
|+|.....||||||||+|+||++|.|.|+++....||+.||++|||+.|+++||++|||+|||||+|+|||||+.|++.|
T Consensus 447 ~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~G 526 (596)
T PLN00044 447 FQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLG 526 (596)
T ss_pred EeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhccc
Confidence 99987789999999999999999999999876678999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEecCCCC-CCCCCCCCCCcccCcCCCC
Q 042677 470 QELYVRVYDADPN-PNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 470 m~~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~ 501 (504)
|+++|.|.++.+. .++..++|++++.||.-++
T Consensus 527 m~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 527 QEVYINVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred CcEEEEEecCCCCccccccCCCcccCccccccc
Confidence 9999999988864 5667889999999986554
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=4.1e-103 Score=817.44 Aligned_cols=482 Identities=44% Similarity=0.748 Sum_probs=389.6
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+|++++||+|+|+|+|+|+++++|||||++|.+++|+||++++||||+||++|+|+|++++|+||||||||.+.|
T Consensus 43 q~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q 122 (536)
T PLN02792 43 QFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQ 122 (536)
T ss_pred CCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchh
Confidence 68999999999999999999999999999999999999999999988899999999999999987789999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCC-CCCeEEEccccCCCCCCCCCcce
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFN-PPDWMLMNGKVSLMNPNTTEHES 159 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~liNG~~~~~~~~~~~~p~ 159 (504)
+++||+|+|||.+++.++.++..+++|++++|+||+++....+...+..+. ..+ ++|.+||||++... .+.
T Consensus 123 ~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~g~--~~~~~~d~~liNG~~~~~------~~~ 194 (536)
T PLN02792 123 KAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDGGR--KLPLMPDGVMINGQGVSY------VYS 194 (536)
T ss_pred hhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhccC--cCCCCCCEEEEeccCCCC------cce
Confidence 999999999999866555566566889999999999987766554444332 233 78999999998632 268
Q ss_pred EEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCc
Q 042677 160 FTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSH 239 (504)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~ 239 (504)
++|++||+|||||||++....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|||++...+.+
T Consensus 195 ~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~ 274 (536)
T PLN02792 195 ITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA 274 (536)
T ss_pred EEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999865433
Q ss_pred CCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCcccee--eeeeeeEEeeeee
Q 042677 240 ADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFS--EINATFTYLRSKV 317 (504)
Q Consensus 240 ~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~--~~~~~~~~~~~~l 317 (504)
. ...+.|||+|.++....+ ..|..|...+..+..+....++..+.... +...|+..+. ...+++++. +
T Consensus 275 ~----~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~--~~~~p~~~~~~~~~~~~~~~~---~ 344 (536)
T PLN02792 275 A----KVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASG--PRTNPQGSYHYGKMKISRTLI---L 344 (536)
T ss_pred C----CCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCC--CCCCCCcccccceeccceeEE---e
Confidence 2 357789999988643211 12222323333332222222233333221 2123443332 123334443 3
Q ss_pred cccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCC-CCcccceEEEeeeCCcEEEEEEEeCCCC
Q 042677 318 MRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASN-VDAIRGVFVATGIHRGWIEIVLKNELEV 396 (504)
Q Consensus 318 ~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~v~ivi~N~~~~ 396 (504)
.......++...|+|||.+|..|++|+|++.++ +++|+++.+..+..|.. .....++.++.+++|++|||+|+|....
T Consensus 345 ~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~-~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~ 423 (536)
T PLN02792 345 ESSAALVKRKQRYAINGVSFVPSDTPLKLADHF-KIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKI 423 (536)
T ss_pred cccccccCceeEEEECCcccCCCCCchhhhhhh-ccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEEEECCCCC
Confidence 222122234578999999999999999987766 66788776534433322 2234568889999999999999998888
Q ss_pred cceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEEEE
Q 042677 397 IDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 397 ~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V 476 (504)
.||||||||+||||++|.|.|++.....||+.||++|||+.|+++||++|||+|||||+|+||||+..|+..||+++|.|
T Consensus 424 ~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v 503 (536)
T PLN02792 424 VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRV 503 (536)
T ss_pred CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEE
Confidence 99999999999999999999988766679999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCcccCcCCCC
Q 042677 477 YDADPNPNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 477 ~~~~~~~~~~~~~p~~~~~c~~~~~ 501 (504)
.++.+..++..++|++++.||.-++
T Consensus 504 ~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 504 YSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred ccCCCccccccCCCcccCccccccC
Confidence 9998877778889999999986544
No 5
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=6.5e-103 Score=819.80 Aligned_cols=485 Identities=44% Similarity=0.756 Sum_probs=383.2
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+||+++||+|+|+|+|+|+++|+|||||++|++++|+||+|+.||||+||++|+|+|++++++||||||||.+.|
T Consensus 54 q~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q 133 (552)
T PLN02354 54 QFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMH 133 (552)
T ss_pred CCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcCCCCCCCcEEEEEEeCCCCcceEEecCccce
Confidence 68999999999999999999999999999999999999999999998899999999999999976789999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCCCCcceE
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNTTEHESF 160 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (504)
+++||+|+|||+++...+.+++..++|++++|+||+++....+...+..+. ..+.++++||||+....+. ...+.+
T Consensus 134 ~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~--~~~~~d~~liNG~~~~~~~--~~~~~~ 209 (552)
T PLN02354 134 RAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSGR--TLGRPDGVLINGKSGKGDG--KDEPLF 209 (552)
T ss_pred ecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcCC--CCCCCCeEEEeCCcCCCCC--CCceEE
Confidence 999999999999876556677666789999999999998766655544432 2356799999999754321 234789
Q ss_pred EEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCcC
Q 042677 161 TVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSHA 240 (504)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~~ 240 (504)
+|++||+|||||||++....+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.......
T Consensus 210 ~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~ 289 (552)
T PLN02354 210 TMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLKK 289 (552)
T ss_pred EECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988999999998543322
Q ss_pred CCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCcccee--eeeeeeEEeeeeec
Q 042677 241 DANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFS--EINATFTYLRSKVM 318 (504)
Q Consensus 241 ~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~--~~~~~~~~~~~~l~ 318 (504)
.....|||+|.++..+++.+.|..+. ...+..+.+..++.++.+....| .+..... ....++++. +.
T Consensus 290 ----~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~l~~~~~~p--~~~~~~~~~~~~~~~~~~---~~ 358 (552)
T PLN02354 290 ----VLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFRWNLTASAARP--NPQGSYHYGKINITRTIK---LV 358 (552)
T ss_pred ----CccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhhhcccccccCC--CCCCccccccccccceEE---Ee
Confidence 46778999998865432222232221 11111222222222222211111 1111110 123344443 32
Q ss_pred ccccccCCceEEEEcceeeeCCCcchhhhhhhcCC-CCccccCCCCCC-CC-CCCcccceEEEeeeCCcEEEEEEEeCCC
Q 042677 319 RSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANG-SGVYELDKFPVN-AS-NVDAIRGVFVATGIHRGWIEIVLKNELE 395 (504)
Q Consensus 319 ~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~v~ivi~N~~~ 395 (504)
..+...++...|+|||.+|..|+.|+|++.++ ++ .|.++.+..+.. |. ......++.++.+++|++|||+|+|.+.
T Consensus 359 ~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~-~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~ 437 (552)
T PLN02354 359 NSASKVDGKLRYALNGVSHVDPETPLKLAEYF-GVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEK 437 (552)
T ss_pred cccccCCceEEEEECCccCCCCCCChHHhhhh-cccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCC
Confidence 21112345678999999999999999887654 33 355543321111 11 1223456788999999999999999988
Q ss_pred CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEEE
Q 042677 396 VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVR 475 (504)
Q Consensus 396 ~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~ 475 (504)
..||||||||+||||++|.|.|+++....+|+.||++|||+.||++||++|||+|||||+|+|||||..|+++||++.+.
T Consensus 438 ~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~ 517 (552)
T PLN02354 438 SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYAS 517 (552)
T ss_pred CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEE
Confidence 89999999999999999999998766667999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCcccCcCCCC
Q 042677 476 VYDADPNPNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 476 V~~~~~~~~~~~~~p~~~~~c~~~~~ 501 (504)
|.++++.+++...+|++.+.|+..+.
T Consensus 518 v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 518 VLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred EeCCccccCcCCCCCccccccccccC
Confidence 99988777767789999999987764
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=9.3e-103 Score=814.99 Aligned_cols=479 Identities=48% Similarity=0.817 Sum_probs=372.4
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQ 80 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~ 80 (504)
|+|||+||+++||+|+|+|+|+|+++|+|||||++|.+++|+||+++.||||+||++|+|+|++++|+||||||||.+.|
T Consensus 53 ~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q 132 (545)
T PLN02168 53 MFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQ 132 (545)
T ss_pred cCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhh
Confidence 68999999999999999999999999999999999999999999998899999999999999986789999999999999
Q ss_pred hhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCCCCcceE
Q 042677 81 KAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNTTEHESF 160 (504)
Q Consensus 81 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~~ 160 (504)
+++||+|+|||+++...+.++..++.|++++|+||++.+...+......+. ..++++.+||||++... +.+
T Consensus 133 ~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g~--~~~~~d~~liNG~~~~~-------~~~ 203 (545)
T PLN02168 133 KAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNGH--SLPNPDGILFNGRGPEE-------TFF 203 (545)
T ss_pred hhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcCC--CCCCCCEEEEeccCCCc-------ceE
Confidence 999999999999877655566566899999999999987555443333221 34578999999998533 789
Q ss_pred EEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCC-c---eeEEEEecc
Q 042677 161 TVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNP-A---DYYIVASPK 236 (504)
Q Consensus 161 ~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~-g---~y~i~~~~~ 236 (504)
+|++|++|||||||++....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++ | +|||++...
T Consensus 204 ~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~ 283 (545)
T PLN02168 204 AFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATAR 283 (545)
T ss_pred EeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999998654 4 899999875
Q ss_pred CCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCcccee--eeeeeeEEee
Q 042677 237 LSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFS--EINATFTYLR 314 (504)
Q Consensus 237 ~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~--~~~~~~~~~~ 314 (504)
..+. ...+.|||+|+++......++|..|...+.....+....++..+.+....+ .|...+. ...+++++.
T Consensus 284 ~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~--~p~~~~~~~~~~~~~~~~- 356 (545)
T PLN02168 284 FTDA----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARS--NPQGSYHYGRINVTRTII- 356 (545)
T ss_pred ccCC----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCC--CCcccccccccccceeEE-
Confidence 4332 467789999988643222233333322222111112222222222211111 2322211 122334443
Q ss_pred eeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcEEEEEEEeCC
Q 042677 315 SKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGWIEIVLKNEL 394 (504)
Q Consensus 315 ~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~ 394 (504)
+.......++...|+|||.+|..|++|++++.++ .+++.+..+..+..|.+.....++.++.++.|++|||+|+|..
T Consensus 357 --~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~VeiViqn~~ 433 (545)
T PLN02168 357 --LHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHF-QLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYHIVFQNPL 433 (545)
T ss_pred --ecccccccCceEEEEECCCccCCCCCchhhhhhc-ccccccccCCCccCCCcCccccCceEEEecCCCEEEEEEeCCC
Confidence 2221111245678999999999999998876654 3334443332222222222234578889999999999999998
Q ss_pred CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEE
Q 042677 395 EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYV 474 (504)
Q Consensus 395 ~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~ 474 (504)
...||||||||+||||++|.|.|++.....||+.||++|||+.||++||++|||+|||||+|+|||||+.|||.||++++
T Consensus 434 ~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~ 513 (545)
T PLN02168 434 FSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYM 513 (545)
T ss_pred CCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEE
Confidence 88999999999999999999999976656799999999999999999999999999999999999999999999999999
Q ss_pred EEecCC-----CC-CCCCCCCCCCcccCcC
Q 042677 475 RVYDAD-----PN-PNKERPPPENLLLCDG 498 (504)
Q Consensus 475 ~V~~~~-----~~-~~~~~~~p~~~~~c~~ 498 (504)
.|.+++ +. .+....+|+++++||.
T Consensus 514 ~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 514 RVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred EEEcccccCccccccccccCCChhhccccc
Confidence 985332 22 2335578999999985
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-97 Score=766.95 Aligned_cols=490 Identities=39% Similarity=0.676 Sum_probs=417.7
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
++|||+|+|++||+|.|+|.|.+.++++|||||++|+.++|+|| +.+ ||||+||++|+|+|++++|.||||||+|.+.
T Consensus 55 ~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 55 QFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred CCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeecccc
Confidence 68999999999999999999999999999999999999999999 666 9999999999999999889999999999999
Q ss_pred hhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecc-cHHHHHHHHhccccCCCCC-CCeEEEccccCCCCCCCCCc
Q 042677 80 QKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQE-SYKEIRSKMKKMQWAYFNP-PDWMLMNGKVSLMNPNTTEH 157 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~~~~~~~~~~~~~~~~-~~~~liNG~~~~~~~~~~~~ 157 (504)
|+++|++|+|||+++...+.|++.+++|++|+++||+++ ....+...++.+. ..+. +|..+|||+..+..+| .
T Consensus 134 ~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~--~~p~~~D~~~iNg~~g~~~~~---~ 208 (563)
T KOG1263|consen 134 QRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTG--ALPNPSDGVLINGRSGFLYNC---T 208 (563)
T ss_pred ccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCC--CCCCCCCceEECCCCCcccCc---e
Confidence 999999999999998877778888899999999999996 7777776666554 3333 8999999999765555 5
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccC
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKL 237 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~ 237 (504)
+.++|++||+|||||+|++....+.|+|+||+|+|||+||.+++|..+++|.|.+|||+||+|++++.+++|+|.+.+.+
T Consensus 209 ~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~ 288 (563)
T KOG1263|consen 209 PTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYF 288 (563)
T ss_pred eEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeee
Confidence 89999999999999999999998999999999999999999999999999999999999999999999999999999877
Q ss_pred CcCCCCCCceeEEEEEeeCCCCCCCCC---CCCCCCCCCccccccccccccccccccCCCCccCCccceee--eeeeeEE
Q 042677 238 SHADANSSIYGVAVLHYDNSTTPPIGI---PPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFSE--INATFTY 312 (504)
Q Consensus 238 ~~~~~~~~~~~~~il~y~~~~~~~~~~---~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~~--~~~~~~~ 312 (504)
.+..........++++|.+...+.+.. .+..+..++..+..++...++..+..+.+.| +|++++.. +...+.+
T Consensus 289 ~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~--~P~~~~~~~~~~i~~~~ 366 (563)
T KOG1263|consen 289 DASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARP--VPQGSYHYGLITIGLTL 366 (563)
T ss_pred ccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCccc--CCCccccccceeeeccE
Confidence 654322267889999999854433332 2233434555666667777777766665555 78877653 3334444
Q ss_pred eeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCC--CC-cccceEEEeeeCCcEEEEE
Q 042677 313 LRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASN--VD-AIRGVFVATGIHRGWIEIV 389 (504)
Q Consensus 313 ~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~g~~v~iv 389 (504)
. +.......++...++||+.+|..|+.|+++++++..+++.+..|+.+..+.. .. .+.++.++.+++++.|||+
T Consensus 367 ~---~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIV 443 (563)
T KOG1263|consen 367 K---LCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIV 443 (563)
T ss_pred E---eccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEE
Confidence 4 4433334467889999999999999999999988666666666655544332 12 3789999999999999999
Q ss_pred EEeCC---CCcceeeecCcceEEEeeccccCCc--cccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccch
Q 042677 390 LKNEL---EVIDSWHLDGFGFYTVGYGIGDWNP--QLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLK 464 (504)
Q Consensus 390 i~N~~---~~~HP~HlHG~~F~Vv~~g~g~~~~--~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~ 464 (504)
|+|.+ ...||||||||+|+||+.|.|.|++ +....+|+++|+.||||.|+||||++|||.|||||+|+||||+.+
T Consensus 444 lqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~ 523 (563)
T KOG1263|consen 444 LQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIED 523 (563)
T ss_pred EeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHH
Confidence 99987 5569999999999999999999999 444679999999999999999999999999999999999999999
Q ss_pred hhhhccEEEEEEecCCCCCCCCCCCCCCcccCcCCCC
Q 042677 465 NWHLGQELYVRVYDADPNPNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 465 H~~~Gm~~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 501 (504)
|+..||+++|+|.++++..++..++|.+.+.||.-+.
T Consensus 524 H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~ 560 (563)
T KOG1263|consen 524 HLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASG 560 (563)
T ss_pred HHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCC
Confidence 9999999999999999888778899999999997654
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.5e-95 Score=768.64 Aligned_cols=485 Identities=27% Similarity=0.468 Sum_probs=360.6
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
|+|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+|++ ||||+||++|+|+|++++++||||||||.+.
T Consensus 30 ~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~ 109 (539)
T TIGR03389 30 KFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW 109 (539)
T ss_pred cccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh
Confidence 689999999999999999999999999999999999999999999999 9999999999999998668999999999987
Q ss_pred hhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHH-HhccccCCCCCCCeEEEccccCCCCCCC-CCc
Q 042677 80 QKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSK-MKKMQWAYFNPPDWMLMNGKVSLMNPNT-TEH 157 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~liNG~~~~~~~~~-~~~ 157 (504)
|+ +||+|+|||+++...+.+++..|+|++|+|+||+++....+... ...+ ...++++++||||+......|. ...
T Consensus 110 ~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~--~~~~~~d~~liNG~~~~~~~~~~~~~ 186 (539)
T TIGR03389 110 LR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG--GAPNVSDAYTINGHPGPLYNCSSKDT 186 (539)
T ss_pred hh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC--CCCCccceEEECCCcCCCCCCCCCCc
Confidence 65 58999999998766555666678999999999999876554332 2222 1234679999999975322221 234
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccC
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKL 237 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~ 237 (504)
+.++|++|++|||||||++....+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++.+|+|||++....
T Consensus 187 ~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~ 266 (539)
T TIGR03389 187 FKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYM 266 (539)
T ss_pred eEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999988999999998654
Q ss_pred CcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCccceeeeeeeeEEeeeee
Q 042677 238 SHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFSEINATFTYLRSKV 317 (504)
Q Consensus 238 ~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~~~~~~~~~~~~~l 317 (504)
++..........|||+|.++.....+..+..+...+..........+.. +.. ...+...|...+..... .+. +
T Consensus 267 ~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~~p~~~~~~~~~--~~~---~ 339 (539)
T TIGR03389 267 DAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRS-LNS-AQYPANVPVTIDRRLFF--TIG---L 339 (539)
T ss_pred cCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccc-ccc-cCCCCCCCCCCCeEEEE--Eee---c
Confidence 4432222456899999988643211111211111111000000001110 100 00111112111111111 111 1
Q ss_pred cccc------ccc-CCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCC-----------CCCCcccceEEEe
Q 042677 318 MRSL------AGI-DGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNA-----------SNVDAIRGVFVAT 379 (504)
Q Consensus 318 ~~~~------~~~-~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 379 (504)
.... ... .....|+|||++|..|.+|+|.+.+. ++++.+..+.....| .+...+.++.++.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~ 418 (539)
T TIGR03389 340 GLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYF-GISGVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVR 418 (539)
T ss_pred ccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhc-ccCCccccCCccCCCccccCCCCCcccccccccCceEEE
Confidence 1100 011 12467999999999899998755433 333333221100001 0011234678899
Q ss_pred eeCCcEEEEEEEeCC---CCcceeeecCcceEEEeeccccCCccc-cCcCCCCCCCcccEEEeCCCcEEEEEEEecCcee
Q 042677 380 GIHRGWIEIVLKNEL---EVIDSWHLDGFGFYTVGYGIGDWNPQL-RSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 380 ~~~g~~v~ivi~N~~---~~~HP~HlHG~~F~Vv~~g~g~~~~~~-~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|++||++|||+.|+++||++|||+|||||.
T Consensus 419 ~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~ 498 (539)
T TIGR03389 419 LKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGV 498 (539)
T ss_pred ecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeE
Confidence 999999999999985 448999999999999999999887542 2368999999999999999999999999999999
Q ss_pred eeeeeccchhhhhccEEEEEEecCCCCCCCCCCCCCCcccC
Q 042677 456 WNLRSQLLKNWHLGQELYVRVYDADPNPNKERPPPENLLLC 496 (504)
Q Consensus 456 w~~HCHil~H~~~Gm~~~~~V~~~~~~~~~~~~~p~~~~~c 496 (504)
|+|||||++|+..||+++|.+.+.++......++|++++.|
T Consensus 499 W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 499 WFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred EEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999887665555678899999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=8.9e-94 Score=756.23 Aligned_cols=476 Identities=27% Similarity=0.510 Sum_probs=353.7
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCC-CCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMD-EPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSIN 78 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~ 78 (504)
|+|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++|+||+|++ ||||+||++|+|+|++ +++||||||||.+
T Consensus 50 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~ 128 (574)
T PLN02191 50 QFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYG 128 (574)
T ss_pred cCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcH
Confidence 689999999999999999999996 789999999999999999999999 9999999999999997 6899999999999
Q ss_pred hhhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCC----
Q 042677 79 FQKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNT---- 154 (504)
Q Consensus 79 ~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~---- 154 (504)
.|+++||+|+|||+++.....++ .+|+|++|+|+||+++........+........++++++||||++.+.|...
T Consensus 129 ~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 207 (574)
T PLN02191 129 MQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFS 207 (574)
T ss_pred HHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCccccccc
Confidence 99999999999998754332232 3589999999999997643322222111111235678999999998766311
Q ss_pred ---------------CCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEE
Q 042677 155 ---------------TEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVL 219 (504)
Q Consensus 155 ---------------~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~ 219 (504)
+....++|++|++|||||||+++...+.|+|+||+|+|||+||.+++|.++++|.|++||||||+
T Consensus 208 ~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVl 287 (574)
T PLN02191 208 NGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVL 287 (574)
T ss_pred CCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEE
Confidence 12336999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCC-ceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCC--CCCCCCCCCCCCccccccccccccccccccCCCCc
Q 042677 220 VTADKNP-ADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPP--IGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNT 296 (504)
Q Consensus 220 v~~~~~~-g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~--~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (504)
|++++++ ++||||+.....+. ......|||+|.+..... +.+.+..|...+... .......+......+
T Consensus 288 V~a~~~~~~~y~ira~~~~~~~---~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~- 359 (574)
T PLN02191 288 LTTDQDPSQNYYISVGVRGRKP---NTTQALTILNYVTAPASKLPSSPPPVTPRWDDFER----SKNFSKKIFSAMGSP- 359 (574)
T ss_pred EECCCCCCCCEEEEEEccccCC---CCCCceEEEEECCCCCCCCCCCCCCCCCcccccch----hhcccccccccccCC-
Confidence 9999876 58999997543222 123456999998765321 111111121111110 011111111100001
Q ss_pred cCCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCC---------CCC
Q 042677 297 RNILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPV---------NAS 367 (504)
Q Consensus 297 ~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~---------~~~ 367 (504)
..|.. ..++.+. +... ...++..+|+|||.+|..|..|+|++.+. +.++.++.+.... .+.
T Consensus 360 ~~p~~-----~~~~~~~---~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (574)
T PLN02191 360 SPPKK-----YRKRLIL---LNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKY-NLKLGFNRKSPPRSYRMDYDIMNPP 429 (574)
T ss_pred CCCCc-----ccceEEE---eccc-ceeCCeEEEEECcccCcCCCcchHHHHhh-ccCcccccCCCcccccccccccCCC
Confidence 01111 1123332 2111 11234568999999999899998887654 3444443321100 000
Q ss_pred -CCCcccceEEEeeeCCcEEEEEEEeCC------CCcceeeecCcceEEEeeccccCCccc-cCcCCCCCCCcccEEEeC
Q 042677 368 -NVDAIRGVFVATGIHRGWIEIVLKNEL------EVIDSWHLDGFGFYTVGYGIGDWNPQL-RSRYNLYDPVVRSTVQVY 439 (504)
Q Consensus 368 -~~~~~~~~~~~~~~~g~~v~ivi~N~~------~~~HP~HlHG~~F~Vv~~g~g~~~~~~-~~~~~~~~p~~rDTv~vp 439 (504)
....+.++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|+++. ...+|+.||++|||+.|+
T Consensus 430 ~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp 509 (574)
T PLN02191 430 PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILY 509 (574)
T ss_pred ccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeC
Confidence 001235677899999999999999975 678999999999999999999998632 246899999999999999
Q ss_pred CCcEEEEEEEecCceeeeeeeccchhhhhccEEEEEEecCCCCCCCCCCCCCCcccCcCCCC
Q 042677 440 PGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYDADPNPNKERPPPENLLLCDGCQS 501 (504)
Q Consensus 440 ~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~ 501 (504)
++||++|||+|||||+|+|||||++|+..||+++|.. .++ . ...+|++++.|+.+..
T Consensus 510 ~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e-~~~-~---~~~~p~~~~~C~~~~~ 566 (574)
T PLN02191 510 PYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAE-GLN-R---IGKIPDEALGCGLTKQ 566 (574)
T ss_pred CCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEec-Chh-h---ccCCCcchhhhhcccc
Confidence 9999999999999999999999999999999999843 232 2 3347888999987643
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.7e-93 Score=750.68 Aligned_cols=472 Identities=28% Similarity=0.532 Sum_probs=354.7
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSIN 78 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~ 78 (504)
++|||+|++++||+|+|+|+|.| .++++|||||+++.+++|+||++++ ||+|+||++|+|+|++ +++||||||||.+
T Consensus 28 ~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~-~~~Gt~wyH~H~~ 106 (541)
T TIGR03388 28 QFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVV-DRPGTYFYHGHYG 106 (541)
T ss_pred cCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEc-CCCEEEEEEecch
Confidence 68999999999999999999999 4899999999999999999999999 9999999999999997 6899999999999
Q ss_pred hhhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCC----
Q 042677 79 FQKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNT---- 154 (504)
Q Consensus 79 ~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~---- 154 (504)
.|+++||+|+|||+++..+..++ .+|+|++|+|+||+++..................+++.+||||++++.|...
T Consensus 107 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~ 185 (541)
T TIGR03388 107 MQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFS 185 (541)
T ss_pred HHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccC
Confidence 99999999999999876444444 3589999999999998765433222211111224678999999987765311
Q ss_pred --------------CCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEE
Q 042677 155 --------------TEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLV 220 (504)
Q Consensus 155 --------------~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v 220 (504)
+....++|++|++|||||||+++.+.+.|+|+||+|+|||+||.+++|.+++.|.|++||||||+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv 265 (541)
T TIGR03388 186 STNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLL 265 (541)
T ss_pred ccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEE
Confidence 123458999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC-ceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCC--CCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 221 TADKNP-ADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPP--IGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 221 ~~~~~~-g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~--~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
++++++ ++|||++....... .....+|||+|.++.... ..+.+..+...+.... ......+......+ .
T Consensus 266 ~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~-~ 337 (541)
T TIGR03388 266 TTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRS----KAFSLAIKAAMGSP-K 337 (541)
T ss_pred eCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCCCCCccccchh----hccchhhhccccCC-C
Confidence 998766 48999998654321 234678999998754321 1111212211111000 00000010000000 0
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCC----------CCCC
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFP----------VNAS 367 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~----------~~~~ 367 (504)
.|.. .++++. +.......++..+|++||.+|..|..|+|.+... ++.++++.+... ..+.
T Consensus 338 ~~~~------~~~~~~---~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
T TIGR03388 338 PPET------SDRRIV---LLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKY-NLLNAFDQKPPPENYPRDYDIFKPPP 407 (541)
T ss_pred CCCC------CCcEEE---EeccCcccCceEEEEECcccCCCCCccHHHHHhh-cCCccccCCCCcccccccccccCCCc
Confidence 1111 233322 1111111234567999999999889998877654 333333322110 0011
Q ss_pred CCCcccceEEEeeeCCcEEEEEEEeCC------CCcceeeecCcceEEEeeccccCCcc-ccCcCCCCCCCcccEEEeCC
Q 042677 368 NVDAIRGVFVATGIHRGWIEIVLKNEL------EVIDSWHLDGFGFYTVGYGIGDWNPQ-LRSRYNLYDPVVRSTVQVYP 440 (504)
Q Consensus 368 ~~~~~~~~~~~~~~~g~~v~ivi~N~~------~~~HP~HlHG~~F~Vv~~g~g~~~~~-~~~~~~~~~p~~rDTv~vp~ 440 (504)
....+.++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|+.+ ....+|++||++|||+.|++
T Consensus 408 ~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~ 487 (541)
T TIGR03388 408 NPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFP 487 (541)
T ss_pred ccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCC
Confidence 123355778899999999999999974 45799999999999999999988754 23468999999999999999
Q ss_pred CcEEEEEEEecCceeeeeeeccchhhhhccEEEEEEecCCCCCCCCCCCCCCcccCc
Q 042677 441 GAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYDADPNPNKERPPPENLLLCD 497 (504)
Q Consensus 441 ~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~~~~~~~~~~~~p~~~~~c~ 497 (504)
+||++|||+|||||.|+|||||++|+..||+++|... ++ ....+|++++.|+
T Consensus 488 ~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 488 YGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred CceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 9999999999999999999999999999999999654 22 2445899999997
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=8.5e-92 Score=743.04 Aligned_cols=476 Identities=28% Similarity=0.521 Sum_probs=358.2
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSIN 78 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~ 78 (504)
++|||+|++++||+|+|+|+|.+ .++++|||||+++.+++|+||++++ ||+|.||++++|+|++ +++||||||||..
T Consensus 51 ~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~ 129 (566)
T PLN02604 51 RSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYG 129 (566)
T ss_pred ccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcH
Confidence 58999999999999999999998 6899999999999989999999999 9999999999999997 7899999999999
Q ss_pred hhhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCC-----
Q 042677 79 FQKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPN----- 153 (504)
Q Consensus 79 ~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~----- 153 (504)
.|+.+||+|+|||+++..+..++ .+|.|.+|+|+||+++...+..............+++..+|||++.+.|..
T Consensus 130 ~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~ 208 (566)
T PLN02604 130 MQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPY 208 (566)
T ss_pred HHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCcc
Confidence 99999999999999876544455 358899999999999876544332222111223467999999999877641
Q ss_pred -----------CCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEe
Q 042677 154 -----------TTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTA 222 (504)
Q Consensus 154 -----------~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~ 222 (504)
.+..+.++|++|++|||||||++....+.|+|+||+|+|||+||.+++|.+++.|.|++||||||+|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~ 288 (566)
T PLN02604 209 LKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKA 288 (566)
T ss_pred ccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEEC
Confidence 123457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc-eeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCC--CCCCCCCCCCccccccccccccccccccCCCCccCC
Q 042677 223 DKNPA-DYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIG--IPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNI 299 (504)
Q Consensus 223 ~~~~g-~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~--~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p 299 (504)
++++| +||||+.....+. ....++|||+|.+.....+. ..+..+...+..........++. +.. .+...+
T Consensus 289 ~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 361 (566)
T PLN02604 289 DQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHG---YIHPPP 361 (566)
T ss_pred CCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccc-ccc---CcCCCC
Confidence 98775 8999987543321 23567899999864321111 11111111111000000000000 000 000001
Q ss_pred ccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCC-----------CCCC
Q 042677 300 LTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPV-----------NASN 368 (504)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~-----------~~~~ 368 (504)
. ..++++. +.......++...|+|||.+|..|..|+|++... ..++.++.+..+. ...+
T Consensus 362 ~------~~d~~~~---~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (566)
T PLN02604 362 L------TSDRVIV---LLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKE-NLTGAFDQTPPPEGYDFANYDIYAKPNN 431 (566)
T ss_pred C------CCCeEEE---EeccccccCCeEEEEECcccCCCCCCchhHhhhh-cCCCcccCCCCCcccccccccccCCccc
Confidence 1 1233333 2111112234578999999999888898776443 3445554221110 0011
Q ss_pred CCcccceEEEeeeCCcEEEEEEEeCC------CCcceeeecCcceEEEeeccccCCccc-cCcCCCCCCCcccEEEeCCC
Q 042677 369 VDAIRGVFVATGIHRGWIEIVLKNEL------EVIDSWHLDGFGFYTVGYGIGDWNPQL-RSRYNLYDPVVRSTVQVYPG 441 (504)
Q Consensus 369 ~~~~~~~~~~~~~~g~~v~ivi~N~~------~~~HP~HlHG~~F~Vv~~g~g~~~~~~-~~~~~~~~p~~rDTv~vp~~ 441 (504)
...+.+..++.++.|++||++|+|.. ...||||||||+||||++|.|.|++.. ...+|+.||++|||+.|+++
T Consensus 432 ~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~ 511 (566)
T PLN02604 432 SNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPY 511 (566)
T ss_pred cccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCC
Confidence 12345678899999999999999985 457999999999999999999887543 34689999999999999999
Q ss_pred cEEEEEEEecCceeeeeeeccchhhhhccEEEEEEecCCCCCCCCCCCCCCcccCcCCC
Q 042677 442 AWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYDADPNPNKERPPPENLLLCDGCQ 500 (504)
Q Consensus 442 g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~~~~~~~~~~~~p~~~~~c~~~~ 500 (504)
||++|||+|||||.|+|||||++|+..||+++|.+. ++ ....+|++++.|+.-+
T Consensus 512 gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 512 GWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSSIMGCGESK 565 (566)
T ss_pred ceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCCcCccccCC
Confidence 999999999999999999999999999999999654 22 2557899999998543
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.2e-90 Score=730.08 Aligned_cols=459 Identities=23% Similarity=0.386 Sum_probs=342.7
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCC-CCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeC-CCceeeeeecch
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMD-EPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTK-DQIGSFFYFPSI 77 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~-~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~-~~~Gt~wYH~H~ 77 (504)
|+|||+|++++||+|+|+|+|+|+ ++++|||||++|.+++|+||+|++ ||||+||++|+|+|+++ +++||||||||.
T Consensus 35 ~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 35 TSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred cCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 689999999999999999999996 899999999999999999999999 99999999999999974 589999999999
Q ss_pred hhhhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCC------
Q 042677 78 NFQKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMN------ 151 (504)
Q Consensus 78 ~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~------ 151 (504)
+.|+. ||+|+|||+++...+ + .+|+|++|+|+||+++...++...+........++++++||||+....+
T Consensus 115 ~~Q~~-~l~G~lIV~~~~~~~--~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~ 190 (538)
T TIGR03390 115 GFQAV-TAFGPLIVEDCEPPP--Y-KYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQIN 190 (538)
T ss_pred chhhh-cceeEEEEccCCccC--C-CccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCcccccccccccc
Confidence 99987 599999999865333 3 3488999999999999876654433222212234578999999975432
Q ss_pred -CCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCce-eeEeecCCCcccceeeceEEEcCCcEEEEEEEecCC----
Q 042677 152 -PNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHR-MVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKN---- 225 (504)
Q Consensus 152 -~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~---- 225 (504)
...|..+.++|++||+|||||||++....+.|+|+||+ |+|||+||.+++|..++.|.|++||||||+|+++++
T Consensus 191 ~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~ 270 (538)
T TIGR03390 191 PSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELC 270 (538)
T ss_pred CCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccc
Confidence 11234678999999999999999999999999999999 999999999999999999999999999999999875
Q ss_pred ---CceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCC--CccCCc
Q 042677 226 ---PADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHR--NTRNIL 300 (504)
Q Consensus 226 ---~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~--p~~~p~ 300 (504)
+++||||+.....+. .....|||+|.++........|..+.. ........+.+. .+.+.... +. .|.
T Consensus 271 ~~~~~~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~--~l~pl~~~~~~~-~~~ 342 (538)
T TIGR03390 271 GGDKRQYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPL-PLPNSTYDWLEY--ELEPLSEENNQD-FPT 342 (538)
T ss_pred cCCCCcEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCC-CccCcchhhhhe--eeEecCccccCC-CCC
Confidence 489999997643322 356789999987543221111221110 000000011111 11111000 00 010
Q ss_pred cceeeeeeeeEEeeeeeccccc--ccCCceEEEEcceeeeC--CCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceE
Q 042677 301 TYFSEINATFTYLRSKVMRSLA--GIDGAPLYTVNNVSYLT--PETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVF 376 (504)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~iNg~~~~~--~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (504)
...+++++. +...+. ..++..+|+|||.+|.. ++.|+|.+.+..+...... ............++.
T Consensus 343 ----~~~~d~~~~---l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 412 (538)
T TIGR03390 343 ----LDEVTRRVV---IDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPN---YTAALANYGFDPETR 412 (538)
T ss_pred ----CCcCceEEE---EEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCC---cccccccCCcCcCce
Confidence 012344444 333221 12456789999999985 7889887654311100000 000000112334567
Q ss_pred EEeeeCCcEEEEEEEeCC--------CCcceeeecCcceEEEeeccccCCccc-cCcCCCCCCCcccEEEeC--------
Q 042677 377 VATGIHRGWIEIVLKNEL--------EVIDSWHLDGFGFYTVGYGIGDWNPQL-RSRYNLYDPVVRSTVQVY-------- 439 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~--------~~~HP~HlHG~~F~Vv~~g~g~~~~~~-~~~~~~~~p~~rDTv~vp-------- 439 (504)
++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++.||++|||+.||
T Consensus 413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~ 492 (538)
T TIGR03390 413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVP 492 (538)
T ss_pred EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccc
Confidence 888999999999999974 578999999999999999999998543 235788999999999996
Q ss_pred --CCcEEEEEEEecCceeeeeeeccchhhhhccEEEEEEecCCC
Q 042677 440 --PGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVRVYDADP 481 (504)
Q Consensus 440 --~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~V~~~~~ 481 (504)
++||++|||++||||+|+|||||++|+..||+++|.|.+.++
T Consensus 493 ~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 493 GAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred cCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 789999999999999999999999999999999999987654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.6e-73 Score=597.55 Aligned_cols=404 Identities=20% Similarity=0.282 Sum_probs=292.9
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+|++ ||+|+||++|+|+|++ .++||||||||...
T Consensus 72 ~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~PG~s~~Y~f~~-~~~GTyWYHsH~~~ 148 (587)
T TIGR01480 72 SIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIAPGETFTYRFPV-RQSGTYWYHSHSGF 148 (587)
T ss_pred ccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccCCCCeEEEEEEC-CCCeeEEEecCchh
Confidence 5899999999999999999999999999999999764 569999999 9999999999999997 68999999999999
Q ss_pred hhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHh----------------------ccc------
Q 042677 80 QKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMK----------------------KMQ------ 131 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----------------------~~~------ 131 (504)
|+.+||+|+|||+++..++.. +|+|++|+|+||++.+...+...+. .+.
T Consensus 149 q~~~GL~G~lIV~~~~~~p~~---~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 225 (587)
T TIGR01480 149 QEQAGLYGPLIIDPAEPDPVR---ADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLAD 225 (587)
T ss_pred HhhccceEEEEECCCccccCC---CCceEEEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccc
Confidence 999999999999976544333 4899999999999876544322110 000
Q ss_pred ---cCCCC-----------CCCeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCC
Q 042677 132 ---WAYFN-----------PPDWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEG 197 (504)
Q Consensus 132 ---~~~~~-----------~~~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 197 (504)
++..+ ....+||||+.... .+.+.+++|++|||||||+++.+.+.|+|+||+|+||++||
T Consensus 226 ~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~------~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG 299 (587)
T TIGR01480 226 RKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAG------NWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDG 299 (587)
T ss_pred cccccccccCCcccccccCccceEEEcCccCCC------CceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCC
Confidence 10000 01247899997521 25689999999999999999999999999999999999999
Q ss_pred CcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCC--CCCcc
Q 042677 198 SYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLD--PFNLQ 275 (504)
Q Consensus 198 ~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~--~~~~~ 275 (504)
.+++|..++.+.|++||||||+|+++ ..|.|+|.+....+ ...+.++|++.++...+..+++..+. ..+..
T Consensus 300 ~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~ 372 (587)
T TIGR01480 300 QYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMG 372 (587)
T ss_pred cCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC------CceEEEEEecCCCCCCCCCCCCCccccChhhcc
Confidence 99999999999999999999999987 46899999976533 34677888876542111111111110 00110
Q ss_pred c-cc---c-----cccc---cccc-------------c--cc----------------cCCCCc---cCCc--------c
Q 042677 276 L-SI---D-----QAKD---IRGC-------------F--VN----------------SYHRNT---RNIL--------T 301 (504)
Q Consensus 276 ~-~~---~-----~~~~---~~~~-------------l--~~----------------~~~~p~---~~p~--------~ 301 (504)
. .. . .... .... . .. .+..+. ..|. .
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (587)
T TIGR01480 373 MGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRR 452 (587)
T ss_pred cccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcc
Confidence 0 00 0 0000 0000 0 00 000000 0000 0
Q ss_pred --------c----eeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCC
Q 042677 302 --------Y----FSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNV 369 (504)
Q Consensus 302 --------~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~ 369 (504)
+ .+....++.+. ..|... -....|+|||..|.+ ..
T Consensus 453 ~~~y~~l~~~~~~~~~~~p~r~~~-~~L~g~----m~~~~wtiNG~~~~~-~~--------------------------- 499 (587)
T TIGR01480 453 VLTYADLHSLFPPPDGRAPGREIE-LHLTGN----MERFAWSFDGEAFGL-KT--------------------------- 499 (587)
T ss_pred eeehhhccccccccCcCCCCceEE-EEEcCC----CceeEEEECCccCCC-CC---------------------------
Confidence 0 00001222222 002111 124569999988642 11
Q ss_pred CcccceEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEE
Q 042677 370 DAIRGVFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAY 449 (504)
Q Consensus 370 ~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 449 (504)
.+.++.|++|+|+|.|.+.+.||||||||.|+++..+ |.+ +.+|||+.|+|++.+.++|+
T Consensus 500 -------pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~~------------~~~~dTv~V~Pg~t~~~~f~ 559 (587)
T TIGR01480 500 -------PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GEF------------QVRKHTVDVPPGGKRSFRVT 559 (587)
T ss_pred -------ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Ccc------------cccCCceeeCCCCEEEEEEE
Confidence 1568899999999999999999999999999998653 211 34789999999999999999
Q ss_pred ecCceeeeeeeccchhhhhccEEEEEE
Q 042677 450 LDNPGMWNLRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 450 adnpG~w~~HCHil~H~~~Gm~~~~~V 476 (504)
+||||.|+||||++.|++.|||..++|
T Consensus 560 ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 560 ADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2e-73 Score=594.57 Aligned_cols=416 Identities=16% Similarity=0.191 Sum_probs=279.2
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecch---
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSI--- 77 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~--- 77 (504)
++||||||+++||+|+|+|+|+|+++|+|||||+++.+ .+||+| ||+|.||++|+|+|++++++||||||||.
T Consensus 73 ~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~ 148 (523)
T PRK10965 73 NLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGIIAPGGKRTVTFTVDQPAATCWFHPHQHGK 148 (523)
T ss_pred CCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCCCCCCEEEEEeccCCCCceEEEecCCCCC
Confidence 58999999999999999999999999999999998864 599998 99999999999999985568999999996
Q ss_pred -hhhhhCCccccEEEeCCCCcCCCCC--CCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCC
Q 042677 78 -NFQKAGGGFGPIRINNRIAINVPFP--KPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNT 154 (504)
Q Consensus 78 -~~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~ 154 (504)
..|+++||+|+|||+++.+.+.+.+ ....|++|+|+||+++.+.++....+.........++.++|||+.+
T Consensus 149 t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~~------ 222 (523)
T PRK10965 149 TGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIY------ 222 (523)
T ss_pred cHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCccc------
Confidence 5999999999999998765432222 2346899999999987655442211111111123568999999987
Q ss_pred CCcceEEEecCCEEEEEEEecCCCeeEEEEE-cCceeeEeecCCCcc-cceeeceEEEcCCcEEEEEEEecCCCceeEEE
Q 042677 155 TEHESFTVTKGKTYRFRISNVGTAWSFNFRI-QNHRMVLVETEGSYT-NKIKLDSLDVHVGQSYSVLVTADKNPADYYIV 232 (504)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~ 232 (504)
|.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||.||+++ +|..++.|.|+|||||||+|++++ .++|.+.
T Consensus 223 ---p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~-~~~~~l~ 297 (523)
T PRK10965 223 ---PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD-GKAFDLV 297 (523)
T ss_pred ---ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC-CceEEEE
Confidence 788875 679999999999999999998 899999999999986 899999999999999999999984 6789988
Q ss_pred EeccCCcCC-CCCCceeEEEEEeeCCCCCCCCCCCCCCCC-CCcccc-ccccccccccccccCC-------CCccCCccc
Q 042677 233 ASPKLSHAD-ANSSIYGVAVLHYDNSTTPPIGIPPKGLDP-FNLQLS-IDQAKDIRGCFVNSYH-------RNTRNILTY 302 (504)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~il~y~~~~~~~~~~~p~~p~~-~~~~~~-~~~~~~~~~~l~~~~~-------~p~~~p~~~ 302 (504)
......... .........++++.........++|..... ...... ......+.+.+..... ... .....
T Consensus 298 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~-~~~~~ 376 (523)
T PRK10965 298 TLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEK-YGDQA 376 (523)
T ss_pred EecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhhcccc-ccccc
Confidence 864322110 000111234555543321111122221100 000000 0000000000000000 000 00000
Q ss_pred eeeeeeeeEEeeeeecc-c---cccc---CCc-----eEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCC
Q 042677 303 FSEINATFTYLRSKVMR-S---LAGI---DGA-----PLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVD 370 (504)
Q Consensus 303 ~~~~~~~~~~~~~~l~~-~---~~~~---~~~-----~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (504)
...+..... . ..+.. . +... .+. ..|+|||+.|... .|
T Consensus 377 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~-~~--------------------------- 426 (523)
T PRK10965 377 MAGMDMDHM-M-GHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN-KP--------------------------- 426 (523)
T ss_pred ccccccccc-c-cccccccccccccccccccccccccccccCCCeECCCC-Cc---------------------------
Confidence 000000000 0 00000 0 0000 000 1258888887532 11
Q ss_pred cccceEEEeeeCCcEEEEEEEeCCC-CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEE
Q 042677 371 AIRGVFVATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAY 449 (504)
Q Consensus 371 ~~~~~~~~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 449 (504)
.+.++.|++++|.|.|.+. +.|||||||++||||++...+ .....+.|||||.|++ +.+.|+++
T Consensus 427 ------~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~--------~~~~~~~wkDTv~v~~-~~~~i~~~ 491 (523)
T PRK10965 427 ------MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKP--------PAAHRAGWKDTVRVEG-GRSEVLVK 491 (523)
T ss_pred ------ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCC--------CCccccccccEEEECC-cEEEEEEE
Confidence 1467899999999999984 789999999999999995321 1122367999999987 66666655
Q ss_pred e----cCceeeeeeeccchhhhhccEEEEEEe
Q 042677 450 L----DNPGMWNLRSQLLKNWHLGQELYVRVY 477 (504)
Q Consensus 450 a----dnpG~w~~HCHil~H~~~Gm~~~~~V~ 477 (504)
+ +++|.||||||||+|||.|||..|+|.
T Consensus 492 f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 492 FDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred ecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 5 567899999999999999999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.2e-71 Score=574.44 Aligned_cols=379 Identities=17% Similarity=0.204 Sum_probs=272.6
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchh--
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSIN-- 78 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~-- 78 (504)
++||||||+++||+|+|+|+|.|+++|+|||||+++... .+||++ ++|.||++|+|+|++++++||||||||.+
T Consensus 73 ~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~ 148 (471)
T PRK10883 73 RYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSPNADWAPVLPIRQNAATCWYHANTPNR 148 (471)
T ss_pred cccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCCCCeEEEEEecCCCceeeEEccCCCCc
Confidence 589999999999999999999999999999999998754 467764 88999999999999866799999999964
Q ss_pred --hhhhCCccccEEEeCCCCcCCCCC--CCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCC
Q 042677 79 --FQKAGGGFGPIRINNRIAINVPFP--KPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNT 154 (504)
Q Consensus 79 --~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~ 154 (504)
.|+.+||+|+|||+++.+.+.+++ ....|++|+|+||+.+....... ..... ...+++.+||||+.+
T Consensus 149 t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~~~~--~g~~gd~~lvNG~~~------ 219 (471)
T PRK10883 149 MAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NEPGS--GGFVGDTLLVNGVQS------ 219 (471)
T ss_pred hhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-ccccc--CCccCCeeEECCccC------
Confidence 599999999999998665433332 13449999999999876443211 01111 123568999999988
Q ss_pred CCcceEEEecCCEEEEEEEecCCCeeEEEEE-cCceeeEeecCCCcc-cceeeceEEEcCCcEEEEEEEecCCCceeEEE
Q 042677 155 TEHESFTVTKGKTYRFRISNVGTAWSFNFRI-QNHRMVLVETEGSYT-NKIKLDSLDVHVGQSYSVLVTADKNPADYYIV 232 (504)
Q Consensus 155 ~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~ 232 (504)
|.++|++| +|||||||+|+.+.+.|+| ++|+|+|||.||+.+ +|..++.|.|+|||||||+|++++ .+.+.++
T Consensus 220 ---p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~-~~~~~l~ 294 (471)
T PRK10883 220 ---PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN-GDEVSIT 294 (471)
T ss_pred ---CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC-CceEEEE
Confidence 89999875 7999999999999999999 899999999997776 899999999999999999999974 4567776
Q ss_pred EeccCCcCC-C-C-CCc----eeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccCCccceee
Q 042677 233 ASPKLSHAD-A-N-SSI----YGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFSE 305 (504)
Q Consensus 233 ~~~~~~~~~-~-~-~~~----~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~~ 305 (504)
+........ . . ... ....+++........ ..+. . +...+.... .. +..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~----------~p~~l~~~~-~~---~~~---- 349 (471)
T PRK10883 295 AGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP--LVTD-----N----------LPMRLLPDE-IM---EGS---- 349 (471)
T ss_pred CCCccccccccccccCCccccccceeEEEEcccccc--CCCC-----c----------CChhhcCCC-CC---CCC----
Confidence 532110000 0 0 000 011222222111000 0000 0 000000000 00 000
Q ss_pred eeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcE
Q 042677 306 INATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGW 385 (504)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (504)
...++++. +.. ..|.|||+.|.+...+ +.++.|++
T Consensus 350 ~~~~~~~~---l~~--------~~~~INg~~~~~~~~~----------------------------------~~~~~g~~ 384 (471)
T PRK10883 350 PIRSREIS---LGD--------DLPGINGALWDMNRID----------------------------------VTAQQGTW 384 (471)
T ss_pred CcceEEEE---ecC--------CcCccCCcccCCCcce----------------------------------eecCCCCE
Confidence 01233444 321 2367999998542211 45789999
Q ss_pred EEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce----eeeeeec
Q 042677 386 IEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG----MWNLRSQ 461 (504)
Q Consensus 386 v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG----~w~~HCH 461 (504)
++|.|.|. +.|||||||+.|||++++.... ...+..|||||.|+ +.+.|+++++++| .||||||
T Consensus 385 e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~--------~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCH 452 (471)
T PRK10883 385 ERWTVRAD--MPQAFHIEGVMFLIRNVNGAMP--------FPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQ 452 (471)
T ss_pred EEEEEECC--CCcCEeECCccEEEEEecCCCC--------CccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecc
Confidence 99999886 6899999999999999953211 11224699999996 4699999999887 8999999
Q ss_pred cchhhhhccEEEEEEecC
Q 042677 462 LLKNWHLGQELYVRVYDA 479 (504)
Q Consensus 462 il~H~~~Gm~~~~~V~~~ 479 (504)
||+|||.|||..|+|..+
T Consensus 453 iLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 453 TLEMADRGSIGQLLVNPA 470 (471)
T ss_pred cccccccCCccCeEEecC
Confidence 999999999999999753
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-58 Score=481.17 Aligned_cols=385 Identities=20% Similarity=0.255 Sum_probs=277.6
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
++|||+||+++||+|+|+++|+|.+.|++||||+..+ +.+||++.. ++++.||++++|.|+. +++||||||+|.+.
T Consensus 60 ~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~-~~~gT~wyh~H~~~ 136 (451)
T COG2132 60 ALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQ-DVPGTYWYHPHTHG 136 (451)
T ss_pred cccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecC-CCCcceEeccCCCc
Confidence 5899999999999999999999977799999998665 679999888 9999999999999996 56789999999999
Q ss_pred hhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHHHHhccccCCCCCCCeEEEccccCCCCCCCCCcce
Q 042677 80 QKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRSKMKKMQWAYFNPPDWMLMNGKVSLMNPNTTEHES 159 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~p~ 159 (504)
|+.+||+|++||++....+..+ |.+..++..+|........... ..+......+..+|||+.. +.
T Consensus 137 Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~vnG~~~---------p~ 201 (451)
T COG2132 137 QVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDEDGTDLYQE---GPAMGGFPGDTLLVNGAIL---------PF 201 (451)
T ss_pred hhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCCCCccccC---CccccCCCCCeEEECCCcc---------ce
Confidence 9999999999999976554433 7777777777775543322211 1111222457899999776 66
Q ss_pred EEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCc
Q 042677 160 FTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSH 239 (504)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~ 239 (504)
+.++. ++|||||+|++..+.+.+++.+++|+||++||.+++|..+|.+.|.|||||||++++++ .+.+.|.+... +
T Consensus 202 ~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~~-~~~~~l~~~~~-~- 277 (451)
T COG2132 202 KAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMND-GGAVTLTALGE-D- 277 (451)
T ss_pred eecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcCC-CCeEEEEeccc-c-
Confidence 66655 45999999999888888888899999999999999999999999999999999999984 67888888751 1
Q ss_pred CCCCCCceeEEEEEeeCCCCCCCCC----CCCCCCCCCccccccccccccccccccCCCCccCCccceeeeeeeeEEeee
Q 042677 240 ADANSSIYGVAVLHYDNSTTPPIGI----PPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRNILTYFSEINATFTYLRS 315 (504)
Q Consensus 240 ~~~~~~~~~~~il~y~~~~~~~~~~----~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~p~~~~~~~~~~~~~~~~ 315 (504)
. .....+......... .+.. ....+ ..+. . .......+......+. + ..+..+.
T Consensus 278 ~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~d~-~----~~~~~~~~~~~~~~~~--~-------~~~~~~~-- 335 (451)
T COG2132 278 M----PDTLKGFRAPNPILT-PSYPVLNGRVGAP-TGDM-A----DHAPVGLLVTILVEPG--P-------NRDTDFH-- 335 (451)
T ss_pred C----Cceeeeeeccccccc-cccccccccccCC-Ccch-h----hccccccchhhcCCCc--c-------cccccch--
Confidence 1 111222221111110 0000 00000 0000 0 0000000000000000 0 0011111
Q ss_pred eecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEEeeeCCcEEEEEEEeCCC
Q 042677 316 KVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVATGIHRGWIEIVLKNELE 395 (504)
Q Consensus 316 ~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~ 395 (504)
+.. ..+...|.+|+..|.+.+ ..+.++.|++++|+|.|.+.
T Consensus 336 -l~~----~~~~~~~~~n~~~~~~~~----------------------------------~~~~~~~G~~~~~~i~n~~~ 376 (451)
T COG2132 336 -LIG----GIGGYVWAINGKAFDDNR----------------------------------VTLIAKAGTRERWVLTNDTP 376 (451)
T ss_pred -hhc----ccccccccccCccCCCCc----------------------------------CceeecCCCEEEEEEECCCC
Confidence 111 112345788888765311 12567899999999999999
Q ss_pred CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeeeeeeccchhhhhccEEEEE
Q 042677 396 VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWNLRSQLLKNWHLGQELYVR 475 (504)
Q Consensus 396 ~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~~~Gm~~~~~ 475 (504)
+.|||||||+.|+|++.+ . ......+.||||+.+.+++.++|+|.+++||.|+||||+++|++.|||..+.
T Consensus 377 ~~HP~HlHg~~F~v~~~~-~--------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~ 447 (451)
T COG2132 377 MPHPFHLHGHFFQVLSGD-A--------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFG 447 (451)
T ss_pred CccCeEEcCceEEEEecC-C--------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEE
Confidence 999999999999999996 1 1223456899999999999999999999999999999999999999999998
Q ss_pred Ee
Q 042677 476 VY 477 (504)
Q Consensus 476 V~ 477 (504)
|.
T Consensus 448 v~ 449 (451)
T COG2132 448 VV 449 (451)
T ss_pred ec
Confidence 85
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2e-43 Score=347.46 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=189.3
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCC--CCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecch
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMD--EPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSI 77 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~--~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~ 77 (504)
++|||+||+++||+|+|+|+|+++ ..+++||||.. .+||++.+ + |.||++++|+|.+ +++||||||||.
T Consensus 55 ~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~ 126 (311)
T TIGR02376 55 SVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAP 126 (311)
T ss_pred cccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCC
Confidence 579999999999999999999985 58999999962 47888776 6 9999999999996 689999999994
Q ss_pred ----hhhhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeeeecccHHHHHH-HHhccccCCCCCCCeEEEccccCCCCC
Q 042677 78 ----NFQKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDWYQESYKEIRS-KMKKMQWAYFNPPDWMLMNGKVSLMNP 152 (504)
Q Consensus 78 ----~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~liNG~~~~~~~ 152 (504)
..|+..||+|+|||+++...+ ..|+|++|+++||+++....... +...........+++++|||+....
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-- 200 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-- 200 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCC--
Confidence 579999999999999854211 34889999999999865432111 0000000012356899999995421
Q ss_pred CCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCccccee--eceEEEcCCcEEEEEEEecCCCceeE
Q 042677 153 NTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIK--LDSLDVHVGQSYSVLVTADKNPADYY 230 (504)
Q Consensus 153 ~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~--~d~v~l~~geR~dv~v~~~~~~g~y~ 230 (504)
.+.+++++|+++||||+|++..+.+.|+++|+.+++|+.||.++.+.. ++++.|+||||+||+|++++ +|.|+
T Consensus 201 ----~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~ 275 (311)
T TIGR02376 201 ----TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYA 275 (311)
T ss_pred ----CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEE
Confidence 156799999999999999999888999999999999999999997644 89999999999999999994 89999
Q ss_pred EEEeccCCcCCCCCCceeEEEEEeeCCC
Q 042677 231 IVASPKLSHADANSSIYGVAVLHYDNST 258 (504)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~il~y~~~~ 258 (504)
++++...... .....+++.|++..
T Consensus 276 ~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 276 YVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred EECcHHHHHH----hCCCEEEEEECCCC
Confidence 9998653321 23577999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=99.97 E-value=6.1e-32 Score=227.21 Aligned_cols=94 Identities=36% Similarity=0.815 Sum_probs=88.5
Q ss_pred CCCCCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 1 MFPGPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 1 ~~PgP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
++|||+|||++||+|+|+|+|.++++++|||||+++...+++||++++ ||+|.||++|+|+|+++.++||||||||...
T Consensus 22 ~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~ 101 (117)
T PF07732_consen 22 QFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHG 101 (117)
T ss_dssp BSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTT
T ss_pred CCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCc
Confidence 589999999999999999999999999999999999888889999998 9999999999999998656999999999998
Q ss_pred hhhCCccccEEEeCC
Q 042677 80 QKAGGGFGPIRINNR 94 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~ 94 (504)
|..+||+|+|||+++
T Consensus 102 ~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 102 QQVMGLYGAIIVEPP 116 (117)
T ss_dssp HHHTTEEEEEEEE-T
T ss_pred hhcCcCEEEEEEcCC
Confidence 888999999999984
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=3.7e-31 Score=231.69 Aligned_cols=109 Identities=31% Similarity=0.467 Sum_probs=99.4
Q ss_pred CcccceEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEE
Q 042677 370 DAIRGVFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAY 449 (504)
Q Consensus 370 ~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ 449 (504)
....+..++.++.|++|+|+|+|.+...|||||||++|+|++++.+.+.......+++.+|.||||+.|+++++++|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~ 107 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFR 107 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEE
Confidence 35677888999999999999999999999999999999999999877665555568899999999999999999999999
Q ss_pred ecCceeeeeeeccchhhhhccEEEEEEec
Q 042677 450 LDNPGMWNLRSQLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 450 adnpG~w~~HCHil~H~~~Gm~~~~~V~~ 478 (504)
+||||.|+|||||++|++.|||..++|.+
T Consensus 108 ~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 108 ADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp ETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=7e-28 Score=215.50 Aligned_cols=152 Identities=31% Similarity=0.540 Sum_probs=123.2
Q ss_pred cceeEEeeeeecccHHHHHH-HHhccc--cCCCCCCCeEEEccccCCCCCCC----CCcceEEEecCCEEEEEEEecCCC
Q 042677 106 AEFDLLIGDWYQESYKEIRS-KMKKMQ--WAYFNPPDWMLMNGKVSLMNPNT----TEHESFTVTKGKTYRFRISNVGTA 178 (504)
Q Consensus 106 ~e~~l~l~d~~~~~~~~~~~-~~~~~~--~~~~~~~~~~liNG~~~~~~~~~----~~~p~~~v~~G~~~rlRliNa~~~ 178 (504)
.|++|+++||+++....+.. .+..+. .+..+++++++|||++.+.|... ...+.+++++|++|||||||+++.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 37899999999987665543 222221 23467889999999998877632 457899999999999999999999
Q ss_pred eeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCC
Q 042677 179 WSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNS 257 (504)
Q Consensus 179 ~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~ 257 (504)
..+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|+|++................|||+|+++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999997799999999632222222235778999999864
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.75 E-value=4.1e-18 Score=148.67 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCeEEEEEEeCCC---CCeeeeeCCcCCCCCCCCCCCccc-CCcCCCC---C-e--EEEEEEeCCCceee
Q 042677 2 FPGPLINCSTDDMIHVNVFNKMD---EPLLFTWNGIQQRLNSWQDGVSGT-NCPIQPG---T-N--WTYVFQTKDQIGSF 71 (504)
Q Consensus 2 ~PgP~i~~~~Gd~v~i~v~N~l~---~~~siH~HG~~~~~~~~~DG~~~~-~~~i~pg---~-~--~~y~~~~~~~~Gt~ 71 (504)
.+||+|++++||+|+|+|+|.+. ....||+||......+.+||++.+ +|+|.|+ + . .++.|++ .++|||
T Consensus 49 ~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f-~~aGty 127 (148)
T TIGR03095 49 LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHF-STAGTY 127 (148)
T ss_pred CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEEC-CCCeEE
Confidence 58999999999999999999964 456777777655444568999988 9998874 1 1 2445554 379999
Q ss_pred eeecchhhhhhCCccccEEEe
Q 042677 72 FYFPSINFQKAGGGFGPIRIN 92 (504)
Q Consensus 72 wYH~H~~~~~~~Gl~G~liV~ 92 (504)
|||||...|+.+||+|.|||+
T Consensus 128 wyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 128 WYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEcCChhHHHCCCEEEEEEC
Confidence 999999999999999999985
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.67 E-value=1.1e-14 Score=143.61 Aligned_cols=245 Identities=15% Similarity=0.053 Sum_probs=155.1
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCC-eeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTA-WSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~d 217 (504)
+.|++||+.. .|.+++++|+++++++.|.... ..+.+++|++. +.||... ...|.||+++.
T Consensus 48 ~~~~~nG~~p--------GP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~t 109 (311)
T TIGR02376 48 QAMTFDGSVP--------GPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETAT 109 (311)
T ss_pred EEEEECCccc--------CceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEE
Confidence 4799999964 3899999999999999998642 46789998874 4577431 23489999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
+.++++ .+|.||++|+........ ......+.|.+..... .+. .+....+ ...+ +.+......
T Consensus 110 y~F~~~-~~Gty~YH~H~~~~~~~q-~~~Gl~G~liV~~~~~-----~~~----~d~e~~l-~l~d--~~~~~~~~~--- 172 (311)
T TIGR02376 110 LRFKAT-RPGAFVYHCAPPGMVPWH-VVSGMNGAIMVLPREG-----LPE----YDKEYYI-GESD--LYTPKDEGE--- 172 (311)
T ss_pred EEEEcC-CCEEEEEEcCCCCchhHH-hhcCcceEEEeeccCC-----CcC----cceeEEE-eeee--Eeccccccc---
Confidence 999987 699999999953210000 0112334444443211 111 0111000 0011 101000000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
.. .+. ..... +.. .....+.|||+.+.. .| .
T Consensus 173 --~~---------~~~-~~~~~-~~~-~~~~~~~iNG~~~~~--~~---------------------------------~ 203 (311)
T TIGR02376 173 --GG---------AYE-DDVAA-MRT-LTPTHVVFNGAVGAL--TG---------------------------------D 203 (311)
T ss_pred --cc---------ccc-chHHH-Hhc-CCCCEEEECCccCCC--CC---------------------------------C
Confidence 00 000 00000 000 112457889985421 00 1
Q ss_pred EeeeCCcEEEEEEEeCCC-CcceeeecCcceEEEeeccccCCccccCcCCCCCCC-cccEEEeCCCcEEEEEEEecCcee
Q 042677 378 ATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPV-VRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~-~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
+.++.|++++|.|.|.+. ..+.||++|++|.+|... |.+- ..+. ..|++.|.||+.+.|-++++.||.
T Consensus 204 ~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~D-G~~~---------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~ 273 (311)
T TIGR02376 204 NALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVT-GKFA---------NPPNRDVETWFIPGGSAAAALYTFEQPGV 273 (311)
T ss_pred cccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEEC-Cccc---------CCCCCCcceEEECCCceEEEEEEeCCCeE
Confidence 356789999999999975 669999999999999984 4321 1122 369999999999999999999999
Q ss_pred eeeeeccchhh-hhccEEEEEEe
Q 042677 456 WNLRSQLLKNW-HLGQELYVRVY 477 (504)
Q Consensus 456 w~~HCHil~H~-~~Gm~~~~~V~ 477 (504)
|++|||...+. ..|++..++|.
T Consensus 274 y~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 274 YAYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred EEEECcHHHHHHhCCCEEEEEEC
Confidence 99999998777 66999999875
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.53 E-value=2.5e-13 Score=144.03 Aligned_cols=217 Identities=13% Similarity=0.127 Sum_probs=138.4
Q ss_pred CeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCcc----c-CCcCCCCCeEEEEEEeCCCceeeeeecchh
Q 042677 5 PLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSG----T-NCPIQPGTNWTYVFQTKDQIGSFFYFPSIN 78 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~ 78 (504)
+++.+++|+++++||.|.. .....+++.|+.+.. ...||.+. + ...|.|||+++..+++ .+.|.|+..+...
T Consensus 260 ~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~V-Ia~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~~g~~~i~a~~~ 337 (587)
T TIGR01480 260 WTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTV-VAVDGQYVHPVSVDEFRIAPAETFDVIVEP-TGDDAFTIFAQDS 337 (587)
T ss_pred ceEEECCCCEEEEEEEecCCCceEEEEECCCEEEE-EEcCCcCcCceEeCeEEEcCcceeEEEEec-CCCceEEEEEEec
Confidence 5689999999999999988 456889999987653 35899864 2 4569999999999996 4578999887543
Q ss_pred hhhhCCccccEEEeCCC-CcCCC-CCCC----CcceeE------------Eee-----ee----------ecc-------
Q 042677 79 FQKAGGGFGPIRINNRI-AINVP-FPKP----EAEFDL------------LIG-----DW----------YQE------- 118 (504)
Q Consensus 79 ~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~l------------~l~-----d~----------~~~------- 118 (504)
.. .|...+.+..... ..+.| .... ..+... .+. +. .+.
T Consensus 338 ~~--~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (587)
T TIGR01480 338 DR--TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDAS 415 (587)
T ss_pred CC--CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccccccccc
Confidence 11 1222222222111 10011 1000 000000 000 00 000
Q ss_pred ---------------------------------------cHHHHHHHH---hccc---------cCCCCCCCeEEEcccc
Q 042677 119 ---------------------------------------SYKEIRSKM---KKMQ---------WAYFNPPDWMLMNGKV 147 (504)
Q Consensus 119 ---------------------------------------~~~~~~~~~---~~~~---------~~~~~~~~~~liNG~~ 147 (504)
....+.... +... .|.+ ....|+|||+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m-~~~~wtiNG~~ 494 (587)
T TIGR01480 416 PKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNM-ERFAWSFDGEA 494 (587)
T ss_pred ccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCC-ceeEEEECCcc
Confidence 000000000 0000 0111 11248999998
Q ss_pred CCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCc
Q 042677 148 SLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPA 227 (504)
Q Consensus 148 ~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g 227 (504)
+.. .+.+.++.|+++||||+|.+.+ .|++|+|||.|.++..||.+ +...|++.|.|||++++.|+++ ++|
T Consensus 495 ~~~------~~pl~v~~Gervri~l~N~t~~-~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~~~f~ad-~pG 564 (587)
T TIGR01480 495 FGL------KTPLRFNYGERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRSFRVTAD-ALG 564 (587)
T ss_pred CCC------CCceEecCCCEEEEEEECCCCC-CcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEEEEEECC-CCe
Confidence 742 2468999999999999998765 57999999999999888863 2234889999999999999998 799
Q ss_pred eeEEEEecc
Q 042677 228 DYYIVASPK 236 (504)
Q Consensus 228 ~y~i~~~~~ 236 (504)
+|++||+..
T Consensus 565 ~w~~HCH~l 573 (587)
T TIGR01480 565 RWAYHCHML 573 (587)
T ss_pred EEEEcCCCH
Confidence 999999853
No 24
>PLN02835 oxidoreductase
Probab=99.16 E-value=1e-09 Score=116.26 Aligned_cols=229 Identities=11% Similarity=0.117 Sum_probs=140.2
Q ss_pred CCeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCcc----c-CCcCCCCCeEEEEEEeCCCceeeeeecch
Q 042677 4 GPLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSG----T-NCPIQPGTNWTYVFQTKDQIGSFFYFPSI 77 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~ 77 (504)
.|++++++|+++++||.|.. .....+|+.|..+.. .+.||.+. + ...|.|||+++..+++...+|.||...-.
T Consensus 201 ~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~ 279 (539)
T PLN02835 201 QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVAST 279 (539)
T ss_pred CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEc
Confidence 47899999999999999998 467899999997653 46899864 2 45699999999999986558999988532
Q ss_pred hhh-hhCCccccEEEeCCCCc----CCCC-CCCC--------cceeEEeeeeecccHH--H--H-HHHHhcc-----ccC
Q 042677 78 NFQ-KAGGGFGPIRINNRIAI----NVPF-PKPE--------AEFDLLIGDWYQESYK--E--I-RSKMKKM-----QWA 133 (504)
Q Consensus 78 ~~~-~~~Gl~G~liV~~~~~~----~~~~-~~~~--------~e~~l~l~d~~~~~~~--~--~-~~~~~~~-----~~~ 133 (504)
... ...... +++-++.... +.+. +..+ ......+...-..... . . ....... ...
T Consensus 280 ~~~~~~~~~~-ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 358 (539)
T PLN02835 280 RFTRQILTAT-AVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP 358 (539)
T ss_pred cccCCCcceE-EEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc
Confidence 110 011112 3333322110 0111 0000 0000001110000000 0 0 0000000 000
Q ss_pred CCCCCCeEEEccccCCCC--C---------------C-----------CCCcceEEEecCCEEEEEEEecCCCeeEEEEE
Q 042677 134 YFNPPDWMLMNGKVSLMN--P---------------N-----------TTEHESFTVTKGKTYRFRISNVGTAWSFNFRI 185 (504)
Q Consensus 134 ~~~~~~~~liNG~~~~~~--~---------------~-----------~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i 185 (504)
.......|.+||..+..- + . ......+.++.|+.+.|-|-|.+.. .|+||+
T Consensus 359 ~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~-~HP~HL 437 (539)
T PLN02835 359 LINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKT-MQSWHL 437 (539)
T ss_pred ccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCC-CCCCCC
Confidence 000013577888876320 0 0 0012346677889999999998654 589999
Q ss_pred cCceeeEeec-CCCc----------ccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 186 QNHRMVLVET-EGSY----------TNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 186 ~gh~~~via~-DG~~----------~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
|||.|+|++. +|.+ ..|...|++.+.++...-+-++++ +||.|.+||+-.
T Consensus 438 HGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~ 498 (539)
T PLN02835 438 DGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIW 498 (539)
T ss_pred CCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecch
Confidence 9999999987 5522 238889999999999999999999 799999999964
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.16 E-value=1.1e-09 Score=115.53 Aligned_cols=90 Identities=24% Similarity=0.273 Sum_probs=75.8
Q ss_pred EEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccc---eeeceEEEcCCcEEE
Q 042677 141 MLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNK---IKLDSLDVHVGQSYS 217 (504)
Q Consensus 141 ~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p---~~~d~v~l~~geR~d 217 (504)
++|||+.+.. ..+.++++.|++.+|+|+|.+....|+|||||+.|+|++.||.+.++ ...|+|.+.+ ++++
T Consensus 414 ~~ING~~~~~-----~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~ 487 (523)
T PRK10965 414 NKINGKAFDM-----NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSE 487 (523)
T ss_pred ccCCCeECCC-----CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEE
Confidence 5899998742 13668999999999999999976669999999999999999987653 4579999976 8899
Q ss_pred EEEEecC---CCceeEEEEecc
Q 042677 218 VLVTADK---NPADYYIVASPK 236 (504)
Q Consensus 218 v~v~~~~---~~g~y~i~~~~~ 236 (504)
++++++. ++|.|.++|+..
T Consensus 488 i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 488 VLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEEEecCCCCCCCCEEEEeCch
Confidence 9999873 467999999965
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.15 E-value=3e-09 Score=113.45 Aligned_cols=239 Identities=13% Similarity=0.061 Sum_probs=143.0
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEe-ecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLV-ETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..+++||+.. .|.|+++.|+++++++.|--... ..+|.||....-- ..||.+ .+..-.|.||+.+.
T Consensus 23 ~~~~~NG~~P--------GP~i~~~~GD~v~v~v~N~l~~~-tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~ 89 (539)
T TIGR03389 23 SILTVNGKFP--------GPTLYAREGDTVIVNVTNNVQYN-VTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYV 89 (539)
T ss_pred EEEEECCccc--------CCEEEEEcCCEEEEEEEeCCCCC-eeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEE
Confidence 4799999976 39999999999999999998854 3555555432111 258864 22223579999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
..+++.+.+|+||+|++..... ....+-|.+..... .+.|....-.+. ...+.+.....
T Consensus 90 Y~f~~~~~~GT~WYHsH~~~~~------~Gl~G~lIV~~~~~---~~~~~~~~d~e~----------~l~l~Dw~~~~-- 148 (539)
T TIGR03389 90 YNFTITGQRGTLWWHAHISWLR------ATVYGAIVILPKPG---VPYPFPKPDREV----------PIILGEWWNAD-- 148 (539)
T ss_pred EEEEecCCCeeEEEecCchhhh------ccceEEEEEcCCCC---CCCCCCCCCceE----------EEEecccccCC--
Confidence 9999865799999999964211 12333333333221 011110000011 00111110000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
.... .. .. +... ....-...+.|||+...... |+ .....+
T Consensus 149 -~~~~-----~~-~~----~~~~-~~~~~~d~~liNG~~~~~~~---------------------~~-------~~~~~~ 188 (539)
T TIGR03389 149 -VEAV-----IN-QA----NQTG-GAPNVSDAYTINGHPGPLYN---------------------CS-------SKDTFK 188 (539)
T ss_pred -HHHH-----HH-HH----HhcC-CCCCccceEEECCCcCCCCC---------------------CC-------CCCceE
Confidence 0000 00 00 0000 00001123678887531100 00 012346
Q ss_pred EeeeCCcEEEEEEEeCC-CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-cee
Q 042677 378 ATGIHRGWIEIVLKNEL-EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN-PGM 455 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~-~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~ 455 (504)
++++.|++++++|.|.+ ...+-|||+||.|.||+.. |.+ ..|...|++.|.+|+.+.|-++++. +|.
T Consensus 189 i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~D-G~~----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~ 257 (539)
T TIGR03389 189 LTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVD-ATY----------TKPFKTKTIVIGPGQTTNVLLTADQSPGR 257 (539)
T ss_pred EEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeC-Ccc----------cCceEeCeEEecCCCEEEEEEECCCCCce
Confidence 88999999999999997 4558999999999999995 322 2466789999999999999999975 799
Q ss_pred eeeeecc
Q 042677 456 WNLRSQL 462 (504)
Q Consensus 456 w~~HCHi 462 (504)
|.++-+.
T Consensus 258 y~i~~~~ 264 (539)
T TIGR03389 258 YFMAARP 264 (539)
T ss_pred EEEEEec
Confidence 8877553
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.09 E-value=4.8e-09 Score=111.81 Aligned_cols=227 Identities=12% Similarity=0.130 Sum_probs=136.4
Q ss_pred eEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCcc----c-CCcCCCCCeEEEEEEeCCCc-eeeeeecchh
Q 042677 6 LINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSG----T-NCPIQPGTNWTYVFQTKDQI-GSFFYFPSIN 78 (504)
Q Consensus 6 ~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~-~~~i~pg~~~~y~~~~~~~~-Gt~wYH~H~~ 78 (504)
+|.|++|+++++||.|.. .....+++.|..+.. ...||.+. + ...|.||||++..+++...+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 489999999999999987 567888888887653 46899854 2 45599999999999973334 5899986543
Q ss_pred hh---hhCCccccEEEeCCCCcCC-C-C-----CCCCc----c-eeEE-eeee-ecccHHHHHHHHhccccCC-CCCCCe
Q 042677 79 FQ---KAGGGFGPIRINNRIAINV-P-F-----PKPEA----E-FDLL-IGDW-YQESYKEIRSKMKKMQWAY-FNPPDW 140 (504)
Q Consensus 79 ~~---~~~Gl~G~liV~~~~~~~~-~-~-----~~~~~----e-~~l~-l~d~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 140 (504)
.+ ...++ +++.+....... + . ...+. + ..+. +... .................+. ......
T Consensus 283 ~~~~~~~~~~--aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (541)
T TIGR03388 283 GRKPNTPPGL--TVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTK 360 (541)
T ss_pred cCCCCCccEE--EEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEE
Confidence 22 11222 444443221110 0 0 00000 0 0000 0000 0000000000000000000 001123
Q ss_pred EEEccccCCCC--------------------------------------CCCCCcceEEEecCCEEEEEEEecCC-----
Q 042677 141 MLMNGKVSLMN--------------------------------------PNTTEHESFTVTKGKTYRFRISNVGT----- 177 (504)
Q Consensus 141 ~liNG~~~~~~--------------------------------------~~~~~~p~~~v~~G~~~rlRliNa~~----- 177 (504)
|.+||..+..- ......-.+.++.|+++.+.|.|...
T Consensus 361 ~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~ 440 (541)
T TIGR03388 361 WAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNN 440 (541)
T ss_pred EEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCC
Confidence 67777765200 00001234788999999999999753
Q ss_pred CeeEEEEEcCceeeEeecC-CCc-----------ccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 178 AWSFNFRIQNHRMVLVETE-GSY-----------TNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 178 ~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
...|+||+|||.|+|++.. |.+ ..|...|++.+.++.-+-+-++++ +||-|.+||+-.
T Consensus 441 ~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~ 510 (541)
T TIGR03388 441 SETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIE 510 (541)
T ss_pred CCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccch
Confidence 3468999999999999987 332 137788999999999999999998 799999999964
No 28
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=3.8e-09 Score=110.56 Aligned_cols=218 Identities=12% Similarity=0.085 Sum_probs=138.4
Q ss_pred eEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCc----cc-CCcCCCCCeEEEEEEeCCCceeeeeecchhh
Q 042677 6 LINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVS----GT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINF 79 (504)
Q Consensus 6 ~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~----~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~ 79 (504)
++.+.++..+++|+.|.. .....+++.|..... ...||.+ .+ +..+.|||+++.....+ ..|++-+.|.. .
T Consensus 200 p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~~~-~~~~~~l~~~~-~ 276 (451)
T COG2132 200 PFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVDMN-DGGAVTLTALG-E 276 (451)
T ss_pred ceeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEEcC-CCCeEEEEecc-c
Confidence 345556777999999998 677788888776553 3478875 35 77899999999999974 47888888876 2
Q ss_pred hhhCCccccEEEeCCCCcCCCCCCCCcceeEEeeee-ecccHHHHHHHH-hcc----c---cCCCCCCCeEEEccccCCC
Q 042677 80 QKAGGGFGPIRINNRIAINVPFPKPEAEFDLLIGDW-YQESYKEIRSKM-KKM----Q---WAYFNPPDWMLMNGKVSLM 150 (504)
Q Consensus 80 ~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~-~~~~~~~~~~~~-~~~----~---~~~~~~~~~~liNG~~~~~ 150 (504)
+..+-+.+.+-..... ..++...+........|- ............ ..+ . ....-....+.+||+.+..
T Consensus 277 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~n~~~~~~ 354 (451)
T COG2132 277 DMPDTLKGFRAPNPIL--TPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGGIGGYVWAINGKAFDD 354 (451)
T ss_pred cCCceeeeeecccccc--ccccccccccccCCCcchhhccccccchhhcCCCcccccccchhhcccccccccccCccCCC
Confidence 2222222222111100 001101111111111110 000000000000 000 0 0000112468899988843
Q ss_pred CCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc---cceeeceEEEcCCcEEEEEEEecCCCc
Q 042677 151 NPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT---NKIKLDSLDVHVGQSYSVLVTADKNPA 227 (504)
Q Consensus 151 ~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~p~~~d~v~l~~geR~dv~v~~~~~~g 227 (504)
....+.++.|+++||+|.|-+. ..|+||+||+.|.|++.| ... .+...|++.+.+++++.+.++++ .+|
T Consensus 355 -----~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~-~~g 426 (451)
T COG2132 355 -----NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDAD-YPG 426 (451)
T ss_pred -----CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCC-CCC
Confidence 1367899999999999999999 568999999999999999 322 35678999999999999999998 678
Q ss_pred eeEEEEecc
Q 042677 228 DYYIVASPK 236 (504)
Q Consensus 228 ~y~i~~~~~ 236 (504)
.|.++|+..
T Consensus 427 ~~~~HCH~l 435 (451)
T COG2132 427 PWMFHCHIL 435 (451)
T ss_pred ceEEeccch
Confidence 999999964
No 29
>PLN02604 oxidoreductase
Probab=99.00 E-value=1.3e-08 Score=108.86 Aligned_cols=227 Identities=13% Similarity=0.094 Sum_probs=137.8
Q ss_pred CeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCcc----c-CCcCCCCCeEEEEEEeCCCce-eeeeecch
Q 042677 5 PLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSG----T-NCPIQPGTNWTYVFQTKDQIG-SFFYFPSI 77 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~-~~~i~pg~~~~y~~~~~~~~G-t~wYH~H~ 77 (504)
++|.+++|+++++||.|.. .....+++.|..+.. .+.||.+. + ...|.||||++..+++...+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~V-Ia~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEE-EEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 4789999999999999997 467788888887653 46899854 2 456999999999999743345 79988543
Q ss_pred h---hhhhCCccccEEEeCCCCc--CCCCCCCCcceeEEeeeeecccHHHHHH------HH----hcc----c-cCCCCC
Q 042677 78 N---FQKAGGGFGPIRINNRIAI--NVPFPKPEAEFDLLIGDWYQESYKEIRS------KM----KKM----Q-WAYFNP 137 (504)
Q Consensus 78 ~---~~~~~Gl~G~liV~~~~~~--~~~~~~~~~e~~l~l~d~~~~~~~~~~~------~~----~~~----~-~~~~~~ 137 (504)
. .+...|. +++-+..... ..+...... ..+.-.+...+....+.. .. +.. . .+....
T Consensus 303 ~~~~~~~~~~~--aIL~Y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 379 (566)
T PLN02604 303 VSRNNTTPPGL--AIFNYYPNHPRRSPPTVPPSG-PLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNG 379 (566)
T ss_pred ccCCCCCccee--EEEEECCCCCCCCCCCCCCCC-CcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCC
Confidence 2 1233332 3344332211 111100000 000000000000000000 00 000 0 000000
Q ss_pred CCeEEEccccCCCCC---------------------------------------CCCCcceEEEecCCEEEEEEEecCC-
Q 042677 138 PDWMLMNGKVSLMNP---------------------------------------NTTEHESFTVTKGKTYRFRISNVGT- 177 (504)
Q Consensus 138 ~~~~liNG~~~~~~~---------------------------------------~~~~~p~~~v~~G~~~rlRliNa~~- 177 (504)
...|.|||..+..-. .......+.++.|+++.+.|.|...
T Consensus 380 ~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 380 YRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred eEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 125777877542100 0001224788999999999999853
Q ss_pred ----CeeEEEEEcCceeeEeecC-CCc-----------ccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 178 ----AWSFNFRIQNHRMVLVETE-GSY-----------TNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 178 ----~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
...|+||+|||.|+|++.. |.+ ..|...|++.+.++.-+-|-++++ +||-|.+||+-.
T Consensus 460 ~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~ 533 (566)
T PLN02604 460 NANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIE 533 (566)
T ss_pred cCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecch
Confidence 3469999999999999987 432 137778999999999999999998 799999999954
No 30
>PLN02354 copper ion binding / oxidoreductase
Probab=98.98 E-value=3.2e-08 Score=105.07 Aligned_cols=234 Identities=11% Similarity=0.027 Sum_probs=139.1
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeE-eecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVL-VETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|++++|+++++++.|..... ..+|.||....- -..||.+. ..-.|.||+.+.
T Consensus 47 ~~~~iNGq~P--------GP~I~~~~GD~v~V~v~N~l~~~-ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~ 112 (552)
T PLN02354 47 QVILINGQFP--------GPNINSTSNNNIVINVFNNLDEP-FLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFT 112 (552)
T ss_pred EEEEECCCCc--------CCcEEEeCCCEEEEEEEECCCCC-cccccccccCCCCcccCCCcC-----CcCCCCCCCcEE
Confidence 4799999976 39999999999999999998643 345555543322 23799642 234699999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
..+++...+|+||+|++...... ....+-|...+... .+.|....-.+. ...+.+.....
T Consensus 113 Y~F~~~~q~GT~WYHsH~~~Q~~-----~Gl~G~lII~~~~~---~~~p~~~~d~e~----------~l~l~Dw~~~~-- 172 (552)
T PLN02354 113 YHFQPKDQIGSYFYYPSTGMHRA-----AGGFGGLRVNSRLL---IPVPYADPEDDY----------TVLIGDWYTKS-- 172 (552)
T ss_pred EEEEeCCCCcceEEecCccceec-----CCccceEEEcCCcC---CCCCCCCcCceE----------EEEeeeeccCC--
Confidence 99998646899999998532111 11222222332211 011110000011 00111110000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
... .. .. +... ..........|||+..... .....+
T Consensus 173 -~~~------~~-~~----~~~g-~~~~~~d~~liNG~~~~~~-------------------------------~~~~~~ 208 (552)
T PLN02354 173 -HTA------LK-KF----LDSG-RTLGRPDGVLINGKSGKGD-------------------------------GKDEPL 208 (552)
T ss_pred -HHH------HH-HH----HhcC-CCCCCCCeEEEeCCcCCCC-------------------------------CCCceE
Confidence 000 00 00 0000 0000112356777632100 012345
Q ss_pred EeeeCCcEEEEEEEeCC-CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-cee
Q 042677 378 ATGIHRGWIEIVLKNEL-EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN-PGM 455 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~-~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG~ 455 (504)
++++.|+++.|+|.|.+ ....-|||.||+|.||+... .+ ..|...|++.|.+|+...|-++++. +|.
T Consensus 209 ~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG-~~----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~ 277 (552)
T PLN02354 209 FTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEG-SH----------VLQNDYDSLDVHVGQCFSVLVTANQAPKD 277 (552)
T ss_pred EEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCC-cc----------cCCcceeEEEEccCceEEEEEECCCCCCc
Confidence 88999999999999988 55699999999999999843 22 1244579999999999999999974 788
Q ss_pred eeeeec
Q 042677 456 WNLRSQ 461 (504)
Q Consensus 456 w~~HCH 461 (504)
|.+.-.
T Consensus 278 Y~i~a~ 283 (552)
T PLN02354 278 YYMVAS 283 (552)
T ss_pred EEEEEe
Confidence 777655
No 31
>PLN02792 oxidoreductase
Probab=98.98 E-value=3.6e-08 Score=104.26 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=135.7
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEee---cCCCcccceeeceEEEcCCcE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVE---TEGSYTNKIKLDSLDVHVGQS 215 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~v~l~~geR 215 (504)
..++|||+.. .|.|++++|+++++++.|-.... ..||-|.+.+.. .||... + +-.|.||+.
T Consensus 36 ~~~~vNGq~P--------GP~I~~~~GD~v~V~v~N~L~~~---ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~s 99 (536)
T PLN02792 36 RGILINGQFP--------GPEIRSLTNDNLVINVHNDLDEP---FLLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKN 99 (536)
T ss_pred EEEEECCCCC--------CCcEEEECCCEEEEEEEeCCCCC---cCEeCCCcccCCCCccCCCCC----C-cCccCCCCc
Confidence 4799999976 39999999999999999998744 355555555544 799633 1 146899999
Q ss_pred EEEEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCC
Q 042677 216 YSVLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRN 295 (504)
Q Consensus 216 ~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p 295 (504)
+...+++++.+|+||+|++...... ....+. ++.+.....+ .+.+. . -.+. ...+.++....
T Consensus 100 ftY~F~~~~q~GT~WYHsH~~~q~~---~Gl~G~-liI~~~~~~~--~p~~~-~-d~e~----------~i~l~Dw~~~~ 161 (536)
T PLN02792 100 YTYDFQVKDQVGSYFYFPSLAVQKA---AGGYGS-LRIYSLPRIP--VPFPE-P-AGDF----------TFLIGDWYRRN 161 (536)
T ss_pred EEEEEEeCCCccceEEecCcchhhh---cccccc-eEEeCCcccC--cCCCc-c-ccee----------EEEecccccCC
Confidence 9999998656999999998532111 112222 2223221110 11111 0 0011 00111110000
Q ss_pred ccCCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccce
Q 042677 296 TRNILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGV 375 (504)
Q Consensus 296 ~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (504)
... .... +..............|||+... ..
T Consensus 162 ---~~~------~~~~-----~~~g~~~~~~~d~~liNG~~~~-----------------------------------~~ 192 (536)
T PLN02792 162 ---HTT------LKKI-----LDGGRKLPLMPDGVMINGQGVS-----------------------------------YV 192 (536)
T ss_pred ---HHH------HHHH-----hhccCcCCCCCCEEEEeccCCC-----------------------------------Cc
Confidence 000 0000 0000000001123566665310 01
Q ss_pred EEEeeeCCcEEEEEEEeCCC-CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-c
Q 042677 376 FVATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN-P 453 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-p 453 (504)
.++.++.|+++.++|.|.+. ...-|+|.||.|.||+.... + ..|...|++.|.+|+.+.|-++++. +
T Consensus 193 ~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~-~----------v~p~~~~~l~i~~GqRydVlV~a~~~~ 261 (536)
T PLN02792 193 YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGT-H----------TVQSMYTSLDIHVGQTYSVLVTMDQPP 261 (536)
T ss_pred ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCc-c----------CCCcceeEEEEccCceEEEEEEcCCCC
Confidence 34778999999999999984 46999999999999998432 2 1244669999999999999999976 5
Q ss_pred eeeeee
Q 042677 454 GMWNLR 459 (504)
Q Consensus 454 G~w~~H 459 (504)
|.|.+.
T Consensus 262 g~Y~i~ 267 (536)
T PLN02792 262 QNYSIV 267 (536)
T ss_pred ceEEEE
Confidence 776654
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=98.97 E-value=4.5e-08 Score=103.55 Aligned_cols=220 Identities=10% Similarity=0.019 Sum_probs=131.0
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEe-ecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLV-ETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|++++|+++++++.|-.... ..+|.||..+.-- ..||.+. ..-.|.||+++.
T Consensus 46 ~~~~vNG~~P--------GP~I~~~~GD~v~V~v~N~L~~~-ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sft 111 (545)
T PLN02168 46 QVIVINDMFP--------GPLLNATANDVINVNIFNNLTEP-FLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWT 111 (545)
T ss_pred EEEEECCcCC--------CCcEEEECCCEEEEEEEeCCCCC-ccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEE
Confidence 4789999976 39999999999999999998754 3556665443222 1599642 124689999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
..+++++.+|+||+|++..... .....+-|...+... .+.+.+. . ..+.. ..+.+.....
T Consensus 112 Y~F~~~~q~GT~WYHsH~~~Q~-----~~GL~G~lII~~~~~-~~~p~~~-~-d~e~~----------l~l~Dw~~~~-- 171 (545)
T PLN02168 112 YRFQVKDQIGSYFYFPSLLLQK-----AAGGYGAIRIYNPEL-VPVPFPK-P-DEEYD----------ILIGDWFYAD-- 171 (545)
T ss_pred EEEEeCCCCceEEEecChhhhh-----hCcceeEEEEcCCcc-cCcCcCc-c-cceee----------EEEEecCCCC--
Confidence 9999965699999999853211 112233333333221 0011111 0 00110 0011110000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
... .... +..... ........|||+.- ....
T Consensus 172 -~~~------~~~~-----~~~g~~-~~~~d~~liNG~~~------------------------------------~~~~ 202 (545)
T PLN02168 172 -HTV------MRAS-----LDNGHS-LPNPDGILFNGRGP------------------------------------EETF 202 (545)
T ss_pred -HHH------HHhh-----hhcCCC-CCCCCEEEEeccCC------------------------------------Ccce
Confidence 000 0000 000000 00012355666531 0124
Q ss_pred EeeeCCcEEEEEEEeCCC-CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC
Q 042677 378 ATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN 452 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 452 (504)
+.++.|+++.++|.|.+. ..+-|+|.||+|+||+.. |.+ ..|...|++.|.+|+.+.|-+++++
T Consensus 203 ~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~D-G~~----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 203 FAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETE-GTY----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred EEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEEC-CeE----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 778899999999999884 469999999999999984 322 2245679999999999999999964
No 33
>PLN02991 oxidoreductase
Probab=98.94 E-value=5.6e-08 Score=102.72 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=133.6
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceee-EeecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMV-LVETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|++++|+++++++.|..... ..+|.||.... --..||.+. + .-.|.||+++.
T Consensus 48 ~~~~vNG~~P--------GP~I~~~~GD~v~V~V~N~L~~~-ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sft 113 (543)
T PLN02991 48 QGILINGKFP--------GPDIISVTNDNLIINVFNHLDEP-FLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYT 113 (543)
T ss_pred EEEEEcCCCC--------CCcEEEECCCEEEEEecCCCCCC-ccEEECCcccCCCccccCCCC----C-CCccCCCCcEE
Confidence 4799999976 39999999999999999998644 35555554432 134799642 2 34699999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
..+++++.+|+||+|++..... .....+-|....... .+.|......+. ...+.+.....
T Consensus 114 Y~F~~~~q~GT~WYHsH~~~q~-----~~Gl~G~lIV~~~~~---~~~p~~~~d~d~----------~i~l~DW~~~~-- 173 (543)
T PLN02991 114 YALQVKDQIGSFYYFPSLGFHK-----AAGGFGAIRISSRPL---IPVPFPAPADDY----------TVLIGDWYKTN-- 173 (543)
T ss_pred EEEEeCCCCcceEEecCcchhh-----hCCCeeeEEEeCCcc---cCccccccccee----------EEEecceecCC--
Confidence 9999865699999999853211 112233333333211 111110000011 00111110000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
... .... +... ..........|||+.. ..+
T Consensus 174 -~~~------~~~~-----~~~~-~~~~~~d~~liNG~~~-------------------------------------~~~ 203 (543)
T PLN02991 174 -HKD------LRAQ-----LDNG-GKLPLPDGILINGRGS-------------------------------------GAT 203 (543)
T ss_pred -HHH------HHHH-----hhcC-CCCCCCCEEEEccCCC-------------------------------------Cce
Confidence 000 0000 0000 0000012345666521 123
Q ss_pred EeeeCCcEEEEEEEeCCCC-cceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc-ee
Q 042677 378 ATGIHRGWIEIVLKNELEV-IDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP-GM 455 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~~~-~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp-G~ 455 (504)
+.++.|+++.++|.|.+.. .+-|+|.||.|+||+.. |.+ ..|...|++.|.+|+...|-+++|++ |.
T Consensus 204 ~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~D-G~~----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~ 272 (543)
T PLN02991 204 LNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVE-GTH----------TIQTPFSSLDVHVGQSYSVLITADQPAKD 272 (543)
T ss_pred EEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeC-Ccc----------ccceeeeEEEEcCCcEEEEEEECCCCCCc
Confidence 6788999999999999854 58999999999999984 322 22556799999999999999999764 63
Q ss_pred e
Q 042677 456 W 456 (504)
Q Consensus 456 w 456 (504)
|
T Consensus 273 y 273 (543)
T PLN02991 273 Y 273 (543)
T ss_pred E
Confidence 3
No 34
>PRK10883 FtsI repressor; Provisional
Probab=98.94 E-value=1.1e-07 Score=99.47 Aligned_cols=228 Identities=14% Similarity=0.084 Sum_probs=132.2
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSV 218 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv 218 (504)
..+.+||+.. .|.|++++|+++++++.|.-...+ .+|.||..+.-- .||..- ..|.||++++.
T Consensus 66 ~v~~~ng~~p--------GPtir~~~Gd~v~v~v~N~L~~~t-tiHwHGl~~~~~-~~~g~~-------~~I~PG~~~~y 128 (471)
T PRK10883 66 SVWGINGRYL--------GPTIRVWKGDDVKLIYSNRLTEPV-SMTVSGLQVPGP-LMGGPA-------RMMSPNADWAP 128 (471)
T ss_pred eEEEECCccc--------CCeEEEECCCEEEEEEEeCCCCCC-ceeECCccCCCC-CCCCcc-------ccCCCCCeEEE
Confidence 4689999865 399999999999999999987553 666666543211 133321 13889999999
Q ss_pred EEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCccC
Q 042677 219 LVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTRN 298 (504)
Q Consensus 219 ~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~~ 298 (504)
.+..++.+|+||+|++......... .....+.+....... ...++|.. .+ .+++.+.+.+.....
T Consensus 129 ~f~~~~~aGT~WYH~H~~~~t~~qv-~~GL~G~lII~d~~~-~~~~~p~~---~~-------~~d~~l~l~D~~~~~--- 193 (471)
T PRK10883 129 VLPIRQNAATCWYHANTPNRMAQHV-YNGLAGMWLVEDEVS-KSLPIPNH---YG-------VDDFPVIIQDKRLDN--- 193 (471)
T ss_pred EEecCCCceeeEEccCCCCchhhhH-hcCCeEEEEEeCCcc-cccCCccc---CC-------CcceeEEeeeeeecc---
Confidence 9988878999999998543221100 011222222333221 11112210 00 001111111100000
Q ss_pred CccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEEE
Q 042677 299 ILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFVA 378 (504)
Q Consensus 299 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (504)
.+ ... ..... ..... ...+.|||+.+ ..+
T Consensus 194 -~g---------~~~-~~~~~-~~g~~-gd~~lvNG~~~--------------------------------------p~~ 222 (471)
T PRK10883 194 -FG---------TPE-YNEPG-SGGFV-GDTLLVNGVQS--------------------------------------PYV 222 (471)
T ss_pred -CC---------Ccc-ccccc-cCCcc-CCeeEECCccC--------------------------------------CeE
Confidence 00 000 00000 00000 12355666532 124
Q ss_pred eeeCCcEEEEEEEeCCC-Ccceeee-cCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 379 TGIHRGWIEIVLKNELE-VIDSWHL-DGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 379 ~~~~g~~v~ivi~N~~~-~~HP~Hl-HG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.++.+ +++|+|.|.+. ...-+++ +||.|+||+...|.. ..|...|.+.|.||+-+.|-+++++.+.|
T Consensus 223 ~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd~~~~~~~ 291 (471)
T PRK10883 223 EVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVDMSNGDEV 291 (471)
T ss_pred EecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEECCCCceE
Confidence 56554 68999999985 4578888 899999999965533 23556799999999999999988777788
Q ss_pred eeee
Q 042677 457 NLRS 460 (504)
Q Consensus 457 ~~HC 460 (504)
.+++
T Consensus 292 ~l~~ 295 (471)
T PRK10883 292 SITA 295 (471)
T ss_pred EEEC
Confidence 8876
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.84 E-value=3.1e-08 Score=86.30 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=71.7
Q ss_pred cceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc-----------cceeeceEEEcCCcEEEEEEEecCC
Q 042677 157 HESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT-----------NKIKLDSLDVHVGQSYSVLVTADKN 225 (504)
Q Consensus 157 ~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-----------~p~~~d~v~l~~geR~dv~v~~~~~ 225 (504)
...+.++.|++++|+|.|.+.. .|+||+|||.|+|++.++... .|...|++.|.+|+++.+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 4789999999999999998876 589999999999999999884 57789999999999999999998 8
Q ss_pred CceeEEEEecc
Q 042677 226 PADYYIVASPK 236 (504)
Q Consensus 226 ~g~y~i~~~~~ 236 (504)
+|.|.++|+..
T Consensus 111 ~G~w~~HCHi~ 121 (138)
T PF07731_consen 111 PGPWLFHCHIL 121 (138)
T ss_dssp TEEEEEEESSH
T ss_pred ceEEEEEEchH
Confidence 99999999864
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.83 E-value=2.5e-07 Score=98.49 Aligned_cols=241 Identities=7% Similarity=-0.005 Sum_probs=140.9
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeE-eecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVL-VETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|++++|+++++++.|.-......+|.||..+.- -..||.+... .-.|.||+.+.
T Consensus 28 ~~~~~NG~~P--------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vT----QcpI~PG~sf~ 95 (538)
T TIGR03390 28 YSVVVNGTSP--------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLAS----QWPIPPGHFFD 95 (538)
T ss_pred EEEEECCcCC--------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccc----cCCCCCCCcEE
Confidence 4799999976 399999999999999999865444466777664322 2378876321 12478999999
Q ss_pred EEEEec-CCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCc
Q 042677 218 VLVTAD-KNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNT 296 (504)
Q Consensus 218 v~v~~~-~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (504)
..++++ ..+|+||+|++... +. .. ..+.|.+.+... .+.. .+.+ ....+.+....+
T Consensus 96 Y~f~~~~~q~GT~WYHsH~~~--Q~--~~--l~G~lIV~~~~~---~~~~-----~d~e--------~~l~l~Dw~~~~- 152 (538)
T TIGR03390 96 YEIKPEPGDAGSYFYHSHVGF--QA--VT--AFGPLIVEDCEP---PPYK-----YDDE--------RILLVSDFFSAT- 152 (538)
T ss_pred EEEEecCCCCeeeEEecCCch--hh--hc--ceeEEEEccCCc---cCCC-----ccCc--------EEEEEeCCCCCC-
Confidence 999875 36899999998632 21 11 334444443211 0110 0100 001111111000
Q ss_pred cCCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceE
Q 042677 297 RNILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVF 376 (504)
Q Consensus 297 ~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (504)
... ....+ +..............|||+......... . +. ...| ...
T Consensus 153 --~~~------~~~~~----~~~~~~~~~~~d~~liNG~~~~~~~~~~--------~----~~---------~~~~-~~~ 198 (538)
T TIGR03390 153 --DEE------IEQGL----LSTPFTWSGETEAVLLNGKSGNKSFYAQ--------I----NP---------SGSC-MLP 198 (538)
T ss_pred --HHH------HHhhh----hccCCccCCCCceEEECCcccccccccc--------c----cC---------CCCC-cce
Confidence 000 00000 0000000011124678887422100000 0 00 0011 134
Q ss_pred EEeeeCCcEEEEEEEeCCC-CcceeeecCcc-eEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc-
Q 042677 377 VATGIHRGWIEIVLKNELE-VIDSWHLDGFG-FYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP- 453 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~-F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp- 453 (504)
.+.++.|+++.|+|.|.+. ...-|+|.||. |+||+.... +..|...|++.|.+|+...|-++++.+
T Consensus 199 ~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~ 267 (538)
T TIGR03390 199 VIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTED 267 (538)
T ss_pred EEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCcc
Confidence 6889999999999999984 45899999999 999999432 234678899999999999999999764
Q ss_pred -------eeeeee
Q 042677 454 -------GMWNLR 459 (504)
Q Consensus 454 -------G~w~~H 459 (504)
|.|.+.
T Consensus 268 ~~~~~~~~~Y~ir 280 (538)
T TIGR03390 268 ELCGGDKRQYFIQ 280 (538)
T ss_pred ccccCCCCcEEEE
Confidence 766554
No 37
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.82 E-value=3e-07 Score=97.88 Aligned_cols=237 Identities=11% Similarity=0.063 Sum_probs=137.7
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEe-ecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLV-ETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|++++|+++++++.|..... ..+|.||..+..- -.||.. . ..-.|.||+++.
T Consensus 49 ~vi~vNGq~P--------GPtI~~~~GD~v~V~V~N~L~~~-ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sft 114 (596)
T PLN00044 49 EAIGINGQFP--------GPALNVTTNWNLVVNVRNALDEP-LLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWT 114 (596)
T ss_pred EEEEEcCcCC--------CCcEEEECCCEEEEEEEeCCCCC-ccEEECCccCCCCccccCCC---C--CcCCcCCCCcEE
Confidence 3799999976 39999999999999999998754 4677777554332 479863 2 235789999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCC-CCCCCccccccccccccccccccCCCCc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKG-LDPFNLQLSIDQAKDIRGCFVNSYHRNT 296 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~~~~~l~~~~~~p~ 296 (504)
..+++++..|+||+|++...... ....+-|.+.+... .+.|.. +...+. ...+.+....+
T Consensus 115 Y~F~~~dq~GT~WYHsH~~~Q~~-----~Gl~GalII~~~~~---~~~P~~~~~~~e~----------~i~l~DW~~~~- 175 (596)
T PLN00044 115 YQFQVKDQVGSFFYAPSTALHRA-----AGGYGAITINNRDV---IPIPFGFPDGGDI----------TLFIADWYARD- 175 (596)
T ss_pred EEEEeCCCCceeEeeccchhhhh-----CcCeeEEEEcCccc---ccccccCCcccce----------EEEecccccCC-
Confidence 99999656999999998532111 11223233333211 111110 000011 00111110000
Q ss_pred cCCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceE
Q 042677 297 RNILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVF 376 (504)
Q Consensus 297 ~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (504)
... .... +... ..........|||..-....... .+ ......
T Consensus 176 --~~~------~~~~-----l~~g-~~~~~~d~~lING~g~~~~n~~~-----------------~~-------~~~~~~ 217 (596)
T PLN00044 176 --HRA------LRRA-----LDAG-DLLGAPDGVLINAFGPYQYNDSL-----------------VP-------PGITYE 217 (596)
T ss_pred --HHH------HHHH-----HhcC-CCCCCCCceEEcccCccccCCcc-----------------cc-------CCCccc
Confidence 000 0000 0000 00000111335553210000000 00 001123
Q ss_pred EEeeeCCcEEEEEEEeCC-CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc-e
Q 042677 377 VATGIHRGWIEIVLKNEL-EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP-G 454 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~-~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp-G 454 (504)
++.++.|+++.++|.|.+ ...--|+|-||+|.||+.. |.+ ..|...|.+.|.+|+.+.+-++++.+ |
T Consensus 218 ~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~D-G~~----------v~P~~vd~i~I~~GQRydVLV~a~q~~~ 286 (596)
T PLN00044 218 RINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAE-GSY----------TSQQNYTNLDIHVGQSYSFLLTMDQNAS 286 (596)
T ss_pred eEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeC-Ccc----------cCceeeeeEEEcCCceEEEEEECCCCCC
Confidence 688999999999999987 5668899999999999994 432 24667899999999999999999865 5
Q ss_pred --eee
Q 042677 455 --MWN 457 (504)
Q Consensus 455 --~w~ 457 (504)
-|+
T Consensus 287 ~~Y~i 291 (596)
T PLN00044 287 TDYYV 291 (596)
T ss_pred CceEE
Confidence 465
No 38
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=98.80 E-value=1.3e-08 Score=85.98 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=50.7
Q ss_pred CCCCeEEEcCCCeEEEEEEeCCCCC--eeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchh
Q 042677 2 FPGPLINCSTDDMIHVNVFNKMDEP--LLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSIN 78 (504)
Q Consensus 2 ~PgP~i~~~~Gd~v~i~v~N~l~~~--~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~ 78 (504)
+..+.|+|++||+|+++|+|..+.+ ..++++|+ +..|.||++.+|+|.+ +++|+|||||-.+
T Consensus 58 ~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 58 NEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred EcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 5678999999999999999998543 35555443 2458899999999995 8999999999876
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.76 E-value=3.7e-07 Score=97.67 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=134.2
Q ss_pred eEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCCCCcc----c-CCcCCCCCeEEEEEEeCCCc-eeeeeecchh
Q 042677 6 LINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQDGVSG----T-NCPIQPGTNWTYVFQTKDQI-GSFFYFPSIN 78 (504)
Q Consensus 6 ~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~DG~~~----~-~~~i~pg~~~~y~~~~~~~~-Gt~wYH~H~~ 78 (504)
+|.+++|++.++||.|.. .....+++.|+.+.. ...||.+. + ...|.||||++..+++...+ +.||-..-..
T Consensus 227 ~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~ 305 (574)
T PLN02191 227 TLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVR 305 (574)
T ss_pred EEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEcc
Confidence 699999999999999997 567788888887654 46899965 2 45699999999999974434 4899876432
Q ss_pred hhh---hCCccccEEEeCCCCcCC-CCCC-----CCcc------eeE-Eeeeee-cccHHHHHH---HHhccccCCCCCC
Q 042677 79 FQK---AGGGFGPIRINNRIAINV-PFPK-----PEAE------FDL-LIGDWY-QESYKEIRS---KMKKMQWAYFNPP 138 (504)
Q Consensus 79 ~~~---~~Gl~G~liV~~~~~~~~-~~~~-----~~~e------~~l-~l~d~~-~~~~~~~~~---~~~~~~~~~~~~~ 138 (504)
.+. ..++ +++-+....... +... .-.+ ... .+.... .+....... .+.... .....
T Consensus 306 ~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~ 381 (574)
T PLN02191 306 GRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN--LIDGY 381 (574)
T ss_pred ccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc--eeCCe
Confidence 211 1222 334342211110 1000 0000 000 000000 000000000 000000 00001
Q ss_pred CeEEEccccCCCC--C----------C--------------------------CCCcceEEEecCCEEEEEEEecC----
Q 042677 139 DWMLMNGKVSLMN--P----------N--------------------------TTEHESFTVTKGKTYRFRISNVG---- 176 (504)
Q Consensus 139 ~~~liNG~~~~~~--~----------~--------------------------~~~~p~~~v~~G~~~rlRliNa~---- 176 (504)
..+.+||..+..- + . ......+.++.|+.+.+=|.|..
T Consensus 382 ~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (574)
T PLN02191 382 TKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKG 461 (574)
T ss_pred EEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccC
Confidence 2466777654200 0 0 00112456777999999999875
Q ss_pred -CCeeEEEEEcCceeeEeecCCC------------cccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 177 -TAWSFNFRIQNHRMVLVETEGS------------YTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 177 -~~~~~~~~i~gh~~~via~DG~------------~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
....|+||+|||+|+||+...+ ...|...|++.+.++.=+-+-++++ +||-|.+||+-.
T Consensus 462 ~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~ 533 (574)
T PLN02191 462 VVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIE 533 (574)
T ss_pred CCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCch
Confidence 2457899999999999975532 1247789999999999999999998 799999999964
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.74 E-value=4.8e-08 Score=82.21 Aligned_cols=90 Identities=14% Similarity=0.016 Sum_probs=68.1
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-ce
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN-PG 454 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG 454 (504)
.++.++.|+.|++.+.|.....+.+|.||...---...+|.. ... .-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~-------~~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP-------GVT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGT-------TTS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcc-------ccc-------ceeEEeecceeeeEeeecccc
Confidence 358899999999999999999999999996641100011100 000 123788999999999988 99
Q ss_pred eeeeeeccchhhhhccEEEEEEecC
Q 042677 455 MWNLRSQLLKNWHLGQELYVRVYDA 479 (504)
Q Consensus 455 ~w~~HCHil~H~~~Gm~~~~~V~~~ 479 (504)
.|.||||...+..+||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988877999999988754
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=2.3e-05 Score=82.86 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=139.7
Q ss_pred CeEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEEcCce-eeEeecCCCcccceeeceEEEcCCcEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRIQNHR-MVLVETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~~~d~v~l~~geR~d 217 (504)
..++|||+.. .|.|.++.|+++.++++|-.. ..+.+|.||.. ..---.||.++. .=.|.|||.|.
T Consensus 48 ~vi~iNG~fP--------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~T-----qCPI~Pg~~~t 113 (563)
T KOG1263|consen 48 QVITINGQFP--------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYIT-----QCPIQPGENFT 113 (563)
T ss_pred eeEeecCCCC--------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCccc-----cCCcCCCCeEE
Confidence 4789999976 399999999999999999955 44566666653 333455994432 12478999999
Q ss_pred EEEEecCCCceeEEEEeccCCcCCCCCCceeEEEEEeeCCCCCCCCCCCCCCCCCCccccccccccccccccccCCCCcc
Q 042677 218 VLVTADKNPADYYIVASPKLSHADANSSIYGVAVLHYDNSTTPPIGIPPKGLDPFNLQLSIDQAKDIRGCFVNSYHRNTR 297 (504)
Q Consensus 218 v~v~~~~~~g~y~i~~~~~~~~~~~~~~~~~~~il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~p~~ 297 (504)
-.++.++..|+||.+++....-. ....+-|......... .+.+. |. .|.. ..+.++--.-
T Consensus 114 Y~F~v~~q~GT~~yh~h~~~~Ra-----~G~~G~liI~~~~~~p-~pf~~-pd-~E~~----------ill~dW~~~~-- 173 (563)
T KOG1263|consen 114 YRFTVKDQIGTLWYHSHVSWQRA-----TGVFGALIINPRPGLP-VPFPK-PD-KEFT----------ILLGDWYKNL-- 173 (563)
T ss_pred EEEEeCCcceeEEEeeccccccc-----cCceeEEEEcCCccCC-CCCCC-CC-ceeE----------EEeEeecccc--
Confidence 99999978999999998653221 1133333333322100 11111 10 1111 0011100000
Q ss_pred CCccceeeeeeeeEEeeeeecccccccCCceEEEEcceeeeCCCcchhhhhhhcCCCCccccCCCCCCCCCCCcccceEE
Q 042677 298 NILTYFSEINATFTYLRSKVMRSLAGIDGAPLYTVNNVSYLTPETPLKLADKFANGSGVYELDKFPVNASNVDAIRGVFV 377 (504)
Q Consensus 298 ~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iNg~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (504)
.... + +.. +..........-...|||... ....|...
T Consensus 174 ~~~~------l-~~~----~~~~~~~p~~~D~~~iNg~~g--------------------------------~~~~~~~~ 210 (563)
T KOG1263|consen 174 NHKN------L-KNF----LDRTGALPNPSDGVLINGRSG--------------------------------FLYNCTPT 210 (563)
T ss_pred CHHH------H-HHh----hccCCCCCCCCCceEECCCCC--------------------------------cccCceeE
Confidence 0000 0 000 000000001012355666641 11244677
Q ss_pred EeeeCCcEEEEEEEeCC--CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-ce
Q 042677 378 ATGIHRGWIEIVLKNEL--EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN-PG 454 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~--~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn-pG 454 (504)
+++..|+++.++|.|.+ ...+ |.|-||.+.||... |.+ ..|..-|++.|-+|+...+-.+||. |+
T Consensus 211 l~v~pGktY~lRiiN~g~~~~l~-F~I~~H~ltvVe~D-g~y----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~ 278 (563)
T KOG1263|consen 211 LTVEPGKTYRLRIINAGLNTSLN-FSIANHQLTVVEVD-GAY----------TKPFTTDSLDIHPGQTYSVLLTADQSPG 278 (563)
T ss_pred EEEcCCCEEEEEEEccccccceE-EEECCeEEEEEEec-ceE----------EeeeeeceEEEcCCcEEEEEEeCCCCCC
Confidence 89999999999999987 3445 99999999999983 332 2355679999999999999999975 45
Q ss_pred e-eeeeec
Q 042677 455 M-WNLRSQ 461 (504)
Q Consensus 455 ~-w~~HCH 461 (504)
. |+-=|=
T Consensus 279 ~Y~i~~~~ 286 (563)
T KOG1263|consen 279 DYYIAASP 286 (563)
T ss_pred cEEEEEEe
Confidence 3 554444
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.22 E-value=5.5e-06 Score=67.61 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=55.8
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCC-CCCCCCCCccc-CCcCCCCCeEEEEEEeCCCceeeeeecchhhhh
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQR-LNSWQDGVSGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQK 81 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~-~~~~~DG~~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~ 81 (504)
-..|++++||+| +++|....++++.++..... +.....+...- ...+.||+++++.|.. +|+|.|+|. .+.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 467999999986 55687667777776543211 00000111000 2346899999999873 899999998 678
Q ss_pred hCCccccEEEe
Q 042677 82 AGGGFGPIRIN 92 (504)
Q Consensus 82 ~~Gl~G~liV~ 92 (504)
..||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 88999999984
No 43
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.17 E-value=1.1e-05 Score=72.11 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=76.6
Q ss_pred eEEEeeeCCcEEEEEEEeCCC-CcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecC-
Q 042677 375 VFVATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDN- 452 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn- 452 (504)
..++.++.|+++.|.|.|.+. ..+.|++.||+|+||+..... + .|...|++.|.+|+.+.|-++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~----------v-~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVP----------V-EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEE----------E-EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccc----------c-cccccceEEeeCCeEEEEEEEeCCC
Confidence 456889999999999999884 579999999999999994321 1 166789999999999999999987
Q ss_pred ceeeeeee----ccchhhhhccEEEEEEec
Q 042677 453 PGMWNLRS----QLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 453 pG~w~~HC----Hil~H~~~Gm~~~~~V~~ 478 (504)
+|.|.++| +...+...++.+.+.+.+
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 666788899988877653
No 44
>PRK02710 plastocyanin; Provisional
Probab=98.02 E-value=2.6e-05 Score=65.90 Aligned_cols=74 Identities=19% Similarity=0.424 Sum_probs=54.7
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhhC
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKAG 83 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 83 (504)
-+.|++++||+| +++|....++++.+.|... .... ...+.||++++|.|.. +|+|-|+|- .+...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~--~~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKE--LSHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCcc--cccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 368999999985 5678777777777654311 0011 2347899999999973 899999997 45668
Q ss_pred CccccEEEe
Q 042677 84 GGFGPIRIN 92 (504)
Q Consensus 84 Gl~G~liV~ 92 (504)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 45
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.97 E-value=1.7e-05 Score=65.42 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=45.6
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhhCC
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKAGG 84 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G 84 (504)
.+|+++.|+.|+|+++|.....+.+...++.. ...|.||++.++.|. +.++|+|=|+|-.+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCC---c-
Confidence 48999999999999999987776666666422 245899999999998 478999999999765 2
Q ss_pred ccccEEE
Q 042677 85 GFGPIRI 91 (504)
Q Consensus 85 l~G~liV 91 (504)
|.|.|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6677775
No 46
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.95 E-value=5.4e-05 Score=66.29 Aligned_cols=87 Identities=13% Similarity=-0.042 Sum_probs=57.6
Q ss_pred EEeeeCCcEEEEEEEeCCC-CcceeeecCcceEE--EeeccccCCccccCcCCCCCCCcccEEEeCC---C--cEEEEEE
Q 042677 377 VATGIHRGWIEIVLKNELE-VIDSWHLDGFGFYT--VGYGIGDWNPQLRSRYNLYDPVVRSTVQVYP---G--AWTAVYA 448 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~-~~HP~HlHG~~F~V--v~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~irf 448 (504)
.+.++.|+.|++.+.|.+. ..|.|-||.+.-.. ....+|. |..-..-.+|+ + ++..+.|
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEEE
Confidence 4778999999999999865 56666666322110 0000000 11111222232 2 2568899
Q ss_pred EecCceeeeeeeccchhhhhccEEEEEE
Q 042677 449 YLDNPGMWNLRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 449 ~adnpG~w~~HCHil~H~~~Gm~~~~~V 476 (504)
+++.+|.+.||||+..|...||-..+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 9999999999999999999999998877
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.94 E-value=1.6e-05 Score=64.93 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=53.2
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCC------ccc-CCcCCCCCeEEEEEEeCCCceeeeeecc
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGV------SGT-NCPIQPGTNWTYVFQTKDQIGSFFYFPS 76 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~------~~~-~~~i~pg~~~~y~~~~~~~~Gt~wYH~H 76 (504)
-..|++++||+| ++.|....++++.+=--. ...|. +.- ...+.||+++++.|. .+|+|.|+|-
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADG-----MPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTS-----SHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEeccc-----ccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 368999999986 566665555665542210 00111 000 123789999999998 5899999998
Q ss_pred hhhhhhCCccccEEEe
Q 042677 77 INFQKAGGGFGPIRIN 92 (504)
Q Consensus 77 ~~~~~~~Gl~G~liV~ 92 (504)
- +...||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 4 8889999999985
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.84 E-value=8.5e-05 Score=58.43 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=51.4
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhhC
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKAG 83 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 83 (504)
-+.|++++||+| +++|....+++++...-... ..+-. ...+.+|++|++.|. ++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~---~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLG---EAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCc---ccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999996 56898877888876543110 01100 122578888888774 5899999997653
Q ss_pred CccccEEEe
Q 042677 84 GGFGPIRIN 92 (504)
Q Consensus 84 Gl~G~liV~ 92 (504)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 388999885
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.70 E-value=8.5e-05 Score=78.37 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=55.5
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchh-hhhhC
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSIN-FQKAG 83 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 83 (504)
+.|+|++||.|.|+|+|.....=.+ ||+...+. | +..-+.||++.+..|++ +++|+|||+|..- ...-.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----n---I~~dv~PG~t~svtF~a-dkPGvy~~~CtefCGa~H~ 624 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----G---VNMEVAPQATASVTFTA-DKPGVYWYYCTWFCHALHM 624 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccc--cceeeccc----C---ccEEEcCCceEEEEEEc-CCCEEEEEECCcccccCcc
Confidence 4699999999999999953211111 55533211 1 12346799999999995 8899999999863 22223
Q ss_pred CccccEEEeC
Q 042677 84 GGFGPIRINN 93 (504)
Q Consensus 84 Gl~G~liV~~ 93 (504)
+|.|.++|++
T Consensus 625 ~M~G~~iVep 634 (635)
T PRK02888 625 EMRGRMLVEP 634 (635)
T ss_pred cceEEEEEEe
Confidence 7999999986
No 50
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.55 E-value=0.00036 Score=59.30 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=49.9
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.|+|.+.|.+..+|.+-++++.+ ...|+||+...++|.++-||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 3779999999999999998888777765421 3457889999999999999999
Q ss_pred eeeecc
Q 042677 457 NLRSQL 462 (504)
Q Consensus 457 ~~HCHi 462 (504)
.|||-+
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999987
No 51
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.53 E-value=0.00044 Score=56.33 Aligned_cols=82 Identities=13% Similarity=0.003 Sum_probs=58.0
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCcee
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
..+.++.|+.|+|+ |.+...|-+.++.-.+..-.. + . ......+++.+.||....+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-----~------~--~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-----E------L--AKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-----h------h--cccccccccccCCCCEEEEEeCC--CEE
Confidence 35789999998775 777788888876433221100 0 0 00123467788999988887765 999
Q ss_pred eeeeeccchhhhhccEEEEEE
Q 042677 456 WNLRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 456 w~~HCHil~H~~~Gm~~~~~V 476 (504)
|.|||- .|...||-..+.|
T Consensus 80 y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred EEEEcC--CccccCCEEEEEE
Confidence 999998 6999999999987
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.44 E-value=0.00064 Score=57.32 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhhCC
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKAGG 84 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G 84 (504)
-+|+|++||+ |++.|.....++++.-+.. . .+|.- .....+|++|++.|. .+|+|=|+|-. ++.+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~--~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---D--PEGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---C--ccccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 4789999999 6788988778887766653 1 13322 234456788888887 39999999975 57889
Q ss_pred ccccEEEeC
Q 042677 85 GFGPIRINN 93 (504)
Q Consensus 85 l~G~liV~~ 93 (504)
|.|.++|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.31 E-value=0.0012 Score=55.07 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=50.6
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeee-CCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhh
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTW-NGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKA 82 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~-HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 82 (504)
...|+|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|. .+|+|=|+|- .+..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4679999999976665554 444443 221 1122211 11245777777774 5899999998 5788
Q ss_pred CCccccEEEeCCC
Q 042677 83 GGGFGPIRINNRI 95 (504)
Q Consensus 83 ~Gl~G~liV~~~~ 95 (504)
.||.|.++|.+++
T Consensus 78 ~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 78 MGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEEEECCCC
Confidence 9999999998743
No 54
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.16 E-value=0.0025 Score=57.42 Aligned_cols=90 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCeEEEcCCCeEEEEEEeCCCCCeeeeeC--CcCC--CCCCCCCCCc----cc------CCcCCCCCeEEEEEEeCCCce
Q 042677 4 GPLINCSTDDMIHVNVFNKMDEPLLFTWN--GIQQ--RLNSWQDGVS----GT------NCPIQPGTNWTYVFQTKDQIG 69 (504)
Q Consensus 4 gP~i~~~~Gd~v~i~v~N~l~~~~siH~H--G~~~--~~~~~~DG~~----~~------~~~i~pg~~~~y~~~~~~~~G 69 (504)
-++|.+..|-+|.|+|+|....++++-.- +..+ ......||.. |. ...|.+|++..-.|. +-++|
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~-~l~aG 163 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYN-DLPAG 163 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEc-cCCCc
Confidence 37899999999999999986544443321 2111 1123356631 11 235789999987775 35799
Q ss_pred eeeeecchhhhhhCCccccEEEeCC
Q 042677 70 SFFYFPSINFQKAGGGFGPIRINNR 94 (504)
Q Consensus 70 t~wYH~H~~~~~~~Gl~G~liV~~~ 94 (504)
+|||-|-...|...||++-|+|.+.
T Consensus 164 ~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 164 YYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEEccCCChhhcCCEEEEEEecC
Confidence 9999999999999999999999873
No 55
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.10 E-value=0.0043 Score=54.69 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=64.1
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCC----CCCCCCCCc----ccC------CcCCCCCeEEEEEEeCCCcee
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQR----LNSWQDGVS----GTN------CPIQPGTNWTYVFQTKDQIGS 70 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~----~~~~~DG~~----~~~------~~i~pg~~~~y~~~~~~~~Gt 70 (504)
++|.+..|=.|.|+|+|....++++-.-=-... .....||.. |.. .-|.+|++-.-.|. +-++|+
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~-~~~~G~ 163 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN-DTSAGK 163 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec-cCCCee
Confidence 799999999999999999866665554111110 012346652 221 22567888555555 578999
Q ss_pred eeeecchhhhhhCCccccEEEeCC
Q 042677 71 FFYFPSINFQKAGGGFGPIRINNR 94 (504)
Q Consensus 71 ~wYH~H~~~~~~~Gl~G~liV~~~ 94 (504)
|||-|-.-.+..+||+|-+||...
T Consensus 164 YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 164 YWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEEcccCChhhcCcEEEEEEecC
Confidence 999999999999999999999874
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.94 E-value=0.0048 Score=50.72 Aligned_cols=60 Identities=12% Similarity=0.075 Sum_probs=43.2
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.+.++|.|.+...|-|.+-+. . -...+++|+...+.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~--------------------------~-~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL--------------------------G-ISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG--------------------------T-EEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC--------------------------c-eEEEECCCCEEEEEEcCCCCEEE
Confidence 57899999999999999988776666541 1 22678899999999999999999
Q ss_pred eeeeccc
Q 042677 457 NLRSQLL 463 (504)
Q Consensus 457 ~~HCHil 463 (504)
-|+|-+.
T Consensus 89 ~~~C~~~ 95 (104)
T PF13473_consen 89 EFYCTMH 95 (104)
T ss_dssp EEB-SSS
T ss_pred EEEcCCC
Confidence 9999973
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.63 E-value=0.027 Score=45.74 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=54.4
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCcc-ccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQ-LRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~-~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
..+.++.|+.|.|+.. +...|.+.+=- . .+... ...... ..-.+..+.+|....+.|. .||
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~-------~---~~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA-------D---GMPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET-------T---SSHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec-------c---cccccccccccC----ccccceecCCCCEEEEEeC--CCe
Confidence 4588999999887544 66777665422 1 11000 000011 0115677888888777776 999
Q ss_pred eeeeeeccchhhhhccEEEEEEe
Q 042677 455 MWNLRSQLLKNWHLGQELYVRVY 477 (504)
Q Consensus 455 ~w~~HCHil~H~~~Gm~~~~~V~ 477 (504)
.|.|+|- . |...||-..+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999884
No 58
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=96.59 E-value=0.01 Score=49.47 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=49.4
Q ss_pred CeEEEcCCCeEEEEEEeCC-CCCeeeeeCCcCCCCCCCCC-CCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhh
Q 042677 5 PLINCSTDDMIHVNVFNKM-DEPLLFTWNGIQQRLNSWQD-GVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKA 82 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l-~~~~siH~HG~~~~~~~~~D-G~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 82 (504)
..|++++||+|. ++|.. ..++++..-+ + ...| + .....+|++|+|.|. ++|+|=|+|-. +..
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~-~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~~ 105 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----D-GDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP--HEA 105 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----C-CCcccc----ccccCCCCEEEEEec---CCcEEEEEccC--CCC
Confidence 578999999965 66543 4556554311 0 0112 1 123578999999996 58999999974 466
Q ss_pred CCccccEEEe
Q 042677 83 GGGFGPIRIN 92 (504)
Q Consensus 83 ~Gl~G~liV~ 92 (504)
.||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7899999984
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.48 E-value=0.012 Score=62.58 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=55.7
Q ss_pred EEeeeCCcEEEEEEEeCC---CCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc
Q 042677 377 VATGIHRGWIEIVLKNEL---EVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP 453 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~---~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 453 (504)
.+.++.|+.|.+.+.|.+ +..|-|-|-++.. -+.+.||....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 367888999999999974 5677776643321 1345689999999999999
Q ss_pred eeeeeeeccch-hhhhccEEEEEEe
Q 042677 454 GMWNLRSQLLK-NWHLGQELYVRVY 477 (504)
Q Consensus 454 G~w~~HCHil~-H~~~Gm~~~~~V~ 477 (504)
|+|.+||...- -.|.+|...+.|.
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEE
Confidence 99999988622 2456888888885
No 60
>PRK02710 plastocyanin; Provisional
Probab=95.79 E-value=0.047 Score=46.04 Aligned_cols=70 Identities=13% Similarity=-0.009 Sum_probs=50.3
Q ss_pred EeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeee
Q 042677 378 ATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWN 457 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~ 457 (504)
+.++.|+.|+| .|.+...|.+.+.+..+ +. .++ ..+.+|....+.|.. ||.+.
T Consensus 49 i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~---------~~-------------~~~-~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKW--VNNKLAPHNAVFDGAKE---------LS-------------HKD-LAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEE--EECCCCCceEEecCCcc---------cc-------------ccc-cccCCCCEEEEEecC--CEEEE
Confidence 67889998877 47777889876542210 00 112 346788877777665 99999
Q ss_pred eeeccchhhhhccEEEEEE
Q 042677 458 LRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 458 ~HCHil~H~~~Gm~~~~~V 476 (504)
|+|= .|...||-..+.|
T Consensus 102 y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 102 YYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEcC--CCccCCcEEEEEE
Confidence 9997 5888999999887
No 61
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.39 E-value=0.081 Score=47.84 Aligned_cols=88 Identities=19% Similarity=0.149 Sum_probs=61.0
Q ss_pred eEEEccccCCCCCCCCCcceEEEecCCEEEEEEEecCCCeeEEEEE-cCc----eeeEeecCCCccc-----ceeeceEE
Q 042677 140 WMLMNGKVSLMNPNTTEHESFTVTKGKTYRFRISNVGTAWSFNFRI-QNH----RMVLVETEGSYTN-----KIKLDSLD 209 (504)
Q Consensus 140 ~~liNG~~~~~~~~~~~~p~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh----~~~via~DG~~~~-----p~~~d~v~ 209 (504)
.+-+||..... ..+-|.+|-++.++++|.+... |.|-+ ..- ..-.++.||.-+. +.....--
T Consensus 75 ~~nfnGts~G~-------m~i~VPAGw~V~i~f~N~~~l~-Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~G 146 (196)
T PF06525_consen 75 PFNFNGTSNGQ-------MTIYVPAGWNVQITFTNQESLP-HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNG 146 (196)
T ss_pred ceeeecccCCc-------EEEEEcCCCEEEEEEEcCCCCC-eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCC
Confidence 57788887643 7899999999999999998765 45544 222 2346777876542 11111224
Q ss_pred EcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 210 VHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 210 l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
|..||++...+... ++|.|||.|.-.
T Consensus 147 I~~G~s~~~~~~~l-~aG~YwlvC~ip 172 (196)
T PF06525_consen 147 ISSGQSASGVYNDL-PAGYYWLVCGIP 172 (196)
T ss_pred ccCCceeeEEEccC-CCceEEEEccCC
Confidence 67999999877544 699999999754
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.32 E-value=0.099 Score=40.91 Aligned_cols=71 Identities=8% Similarity=-0.087 Sum_probs=46.1
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.|.| .|.+...|-++++...+ +..+ ++ ...+.++... +++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~-~~~~~~g~~~--~~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LK-GPMMKKEQAY--SLTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------cc-ccccCCCCEE--EEECCCCEEE
Confidence 477889999877 68777889888653221 0000 11 1123456544 4566889999
Q ss_pred eeeeccchhhhhccEEEEEE
Q 042677 457 NLRSQLLKNWHLGQELYVRV 476 (504)
Q Consensus 457 ~~HCHil~H~~~Gm~~~~~V 476 (504)
.|||=+ | -.|-..+.|
T Consensus 67 ~y~C~~--H--p~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--H--PFMRGKVVV 82 (83)
T ss_pred EEEcCC--C--CCCeEEEEE
Confidence 999997 3 358777776
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.56 E-value=0.23 Score=41.55 Aligned_cols=79 Identities=8% Similarity=0.006 Sum_probs=49.8
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
...+.++.|++|.|+..+. .|- |........+. . +.+.-.++.... ++++.||
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hn---------v~~~~~~~p~g--~-----------~~~~s~~g~~~~--~tF~~~G 66 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHN---------VETIKGMIPEG--A-----------EAFKSKINEEYT--VTVTEEG 66 (116)
T ss_pred CCEEEECCCCEEEEEECCC---Cee---------EEEccCCCcCC--c-----------ccccCCCCCEEE--EEeCCCE
Confidence 3458899999999987764 242 22211000000 0 011113455544 4557899
Q ss_pred eeeeeeccchhhhhccEEEEEEecCCCC
Q 042677 455 MWNLRSQLLKNWHLGQELYVRVYDADPN 482 (504)
Q Consensus 455 ~w~~HCHil~H~~~Gm~~~~~V~~~~~~ 482 (504)
.+-|+|= .|..+||-..+.|.+++..
T Consensus 67 ~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n 92 (116)
T TIGR02375 67 VYGVKCT--PHYGMGMVALIQVGDPPAN 92 (116)
T ss_pred EEEEEcC--CCccCCCEEEEEECCCCcC
Confidence 9999999 5999999999999886543
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.73 E-value=0.19 Score=43.59 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=54.5
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEc--C----ceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEE
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQ--N----HRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYI 231 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~--g----h~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i 231 (504)
..++++.|++||+-+-|.+... |.|.++ + |.-..+.+| ..+--..+++.|.||+..++++++. .+|+|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft-~~g~ye~ 138 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFT-GAGKYEF 138 (158)
T ss_pred CcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEec-CCccEEE
Confidence 5689999999999999998755 455554 2 211222222 1122345689999999999999998 6999999
Q ss_pred EEecc
Q 042677 232 VASPK 236 (504)
Q Consensus 232 ~~~~~ 236 (504)
.|...
T Consensus 139 ~C~iP 143 (158)
T COG4454 139 ACNIP 143 (158)
T ss_pred EecCC
Confidence 99854
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.34 E-value=1.5 Score=36.88 Aligned_cols=75 Identities=20% Similarity=0.104 Sum_probs=55.1
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
...+.++.|+.|.+.+.+. +..|.|.+-+.... +.+.||....+.|.++.||
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~G 96 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKPG 96 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSSE
T ss_pred cceecccccceEeEEEEcC-CccccccccccCcc---------------------------cccccccceeeeeeeccCC
Confidence 3468899999999999996 55688777644332 2345789999999999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEe
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVY 477 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~ 477 (504)
.+-..|...= .-|..|...++|.
T Consensus 97 ~y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 97 TYYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEEE-SSSSTTGGG-EEEEEEE
T ss_pred cEEEcCccccCcCcCCCeEEEEEC
Confidence 9999998643 4667777777763
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.20 E-value=0.98 Score=38.04 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=46.7
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.++.|++++|++.+... .|.|++.+..+. +.+-||+.-.+-++++ .+|.|.++|...
T Consensus 46 ~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred ceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCccc
Confidence 67999999999999998544 567777765543 3567888888999987 799999999853
No 67
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.16 E-value=0.42 Score=40.01 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=52.5
Q ss_pred CeEEEcCC-CeEEEEEEeCCCCCeeeeeC--------------------CcCCCCCCCCCCCcc-c--CCcCCCCCeEEE
Q 042677 5 PLINCSTD-DMIHVNVFNKMDEPLLFTWN--------------------GIQQRLNSWQDGVSG-T--NCPIQPGTNWTY 60 (504)
Q Consensus 5 P~i~~~~G-d~v~i~v~N~l~~~~siH~H--------------------G~~~~~~~~~DG~~~-~--~~~i~pg~~~~y 60 (504)
.+|.|+.+ ..|.|+|+|...-+-..-=| |+.....+..| +. + -.-|.+||+.+.
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d--~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGD--ARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCC--cceEEEccccCCCceEEE
Confidence 47899984 89999999984322111111 11111111111 11 1 233899999999
Q ss_pred EEEeCC-Ccee-eeeecchhhhhhCCccccEE
Q 042677 61 VFQTKD-QIGS-FFYFPSINFQKAGGGFGPIR 90 (504)
Q Consensus 61 ~~~~~~-~~Gt-~wYH~H~~~~~~~Gl~G~li 90 (504)
.|.++. ++|+ |=|-|-.-.+.. .|.|.|.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 999853 5886 999999877776 4888875
No 68
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.75 E-value=0.4 Score=41.61 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=66.5
Q ss_pred EeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceeee
Q 042677 378 ATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMWN 457 (504)
Q Consensus 378 ~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~ 457 (504)
+.++.|+++..++.|....-|=|=+= ++....+ .+..... ..-..-.-..++.|.||....+-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 56788999999999999877765444 2211111 1100000 001112245799999999999999999999999
Q ss_pred eeeccchhhhhccEEEEEEe
Q 042677 458 LRSQLLKNWHLGQELYVRVY 477 (504)
Q Consensus 458 ~HCHil~H~~~Gm~~~~~V~ 477 (504)
|-|=|-.|-+.||-..++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999874
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.42 E-value=0.82 Score=38.13 Aligned_cols=73 Identities=16% Similarity=-0.030 Sum_probs=47.0
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.|.|+.+ .+...|-. .+.+.+.|+. ......+|+...+.| +.||.+
T Consensus 43 ~ltV~~GdTVtw~~~-~d~~~HnV---------~s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWT-GEGGGHNV---------VSDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEEC-CCCCCEEE---------EECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 478899999998543 23456654 2222223321 111234566555555 789999
Q ss_pred eeeeccchhhhhccEEEEEEe
Q 042677 457 NLRSQLLKNWHLGQELYVRVY 477 (504)
Q Consensus 457 ~~HCHil~H~~~Gm~~~~~V~ 477 (504)
.|+|=. |..+||-..+.|.
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999995 8989999998873
No 70
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.70 E-value=0.75 Score=42.60 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=56.3
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCcee
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
+.+.++.|+.|++.+.+.+- .|.| +|-+.+ --..+-||....+.|.++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-~Hsf-------~ip~~~--------------------~k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-IHSF-------WVPELG--------------------GKIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-hhcc-------cccccC--------------------ceEEecCCcEEEEEEEeCCCEE
Confidence 35789999999999998653 3544 442221 1123457889999999999999
Q ss_pred eeeeeccch-hhhhccEEEEEEecCC
Q 042677 456 WNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 456 w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
+...|-..- ..|..|...++|.+++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHH
Confidence 999998632 3478898999888654
No 71
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=90.58 E-value=2.5 Score=35.49 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=52.3
Q ss_pred cceEEEecC-CEEEEEEEecCCCe----eEEEEE-cCceeeEeec-------CCCcccc----eeeceEEEcCCcEEEEE
Q 042677 157 HESFTVTKG-KTYRFRISNVGTAW----SFNFRI-QNHRMVLVET-------EGSYTNK----IKLDSLDVHVGQSYSVL 219 (504)
Q Consensus 157 ~p~~~v~~G-~~~rlRliNa~~~~----~~~~~i-~gh~~~via~-------DG~~~~p----~~~d~v~l~~geR~dv~ 219 (504)
...|+|.++ +.+++.|-|.+... .|++-| ..-.+.-++. |-.|+++ +...+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 367999984 88999999998643 333333 1112332333 3445543 23456679999999999
Q ss_pred EEecC-CCc-eeEEEEec
Q 042677 220 VTADK-NPA-DYYIVASP 235 (504)
Q Consensus 220 v~~~~-~~g-~y~i~~~~ 235 (504)
++++. .+| +|.+.|+-
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99864 466 69999974
No 72
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=87.77 E-value=3.3 Score=35.10 Aligned_cols=74 Identities=15% Similarity=0.003 Sum_probs=47.2
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.++++.|++|+| .|.+...|..+. .+... |..-+++....+.....- ++-||.+
T Consensus 55 ~v~v~pGDTVtw--~~~d~~~Hnv~~---------~~~~~-------------~~g~~~~~~~~~~s~~~T--fe~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTW--VNTDSVGHNVTA---------VGGMD-------------PEGSGTLKAGINESFTHT--FETPGEY 108 (128)
T ss_pred EEEECCCCEEEE--EECCCCCceEEE---------eCCCC-------------cccccccccCCCcceEEE--ecccceE
Confidence 367889999888 677666775443 22211 111223333334544444 4459999
Q ss_pred eeeeccchhhhhccEEEEEEec
Q 042677 457 NLRSQLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 457 ~~HCHil~H~~~Gm~~~~~V~~ 478 (504)
.|.|=. |.-+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999997 88889988888753
No 73
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=85.94 E-value=3.6 Score=41.65 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCccc--CCcCCCCCeEEEEEEeCCCceeeeeecchhhhhh
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGT--NCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKA 82 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~--~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 82 (504)
.++.++.|+ +.+.|+|....++.+-. .+|+..+ .-.|.||.+.++.+++ .+|+|=|+|-. +
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~--~-- 106 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGL--L-- 106 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecCc--C--
Confidence 456778885 77888888654422110 1232211 3468999999988776 59999999933 2
Q ss_pred CCccccEEEeCC
Q 042677 83 GGGFGPIRINNR 94 (504)
Q Consensus 83 ~Gl~G~liV~~~ 94 (504)
..+.|.|+|.+.
T Consensus 107 ~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 TNPKGKLIVKGE 118 (375)
T ss_pred CCCCceEEEeCC
Confidence 335899999864
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=84.80 E-value=4.1 Score=38.86 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=56.9
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+... +..|.|.+-+..+ -+.+-||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~---------------------------k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG---------------------------KIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCc---------------------------eeeecCCceEEEEEecCCCe
Confidence 3457899999999988887 4446554443222 23344678888999999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDADP 481 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~~ 481 (504)
.+-.+|+..- .-|..|-+.+.|..+++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999765 45666767788876654
No 75
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=83.92 E-value=1.8 Score=44.03 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=29.2
Q ss_pred CcCCCCCeEEEEEEeCCCceeeeeecchh-hhhhCCccccEEEe
Q 042677 50 CPIQPGTNWTYVFQTKDQIGSFFYFPSIN-FQKAGGGFGPIRIN 92 (504)
Q Consensus 50 ~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~Gl~G~liV~ 92 (504)
..+.|-++-.|.|.+ +.+|.+||.|--. ..+-+=|.|-++|+
T Consensus 594 ~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~em~~rmlve 636 (637)
T COG4263 594 MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHMEMAGRMLVE 636 (637)
T ss_pred EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHhhccceeec
Confidence 347788889999996 7899999997532 12222256777775
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=78.35 E-value=9.1 Score=35.36 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=45.2
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.++.|+.+||++.+... .|.|.+.+... .+..-||..-.+.++++ .+|.|..+|...
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~-~~G~y~~~c~e~ 176 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--IHSFWVPELGG----------------KIDAIPGQYNALWFNAD-EPGVYYGYCAEL 176 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--hhcccccccCc----------------eEEecCCcEEEEEEEeC-CCEEEEEEehhh
Confidence 67999999999999887554 34444444322 24567899999999888 699999999853
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.08 E-value=8.1 Score=36.89 Aligned_cols=77 Identities=6% Similarity=-0.083 Sum_probs=56.6
Q ss_pred CeEEEcCCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeeecchh-hhhhC
Q 042677 5 PLINCSTDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSIN-FQKAG 83 (504)
Q Consensus 5 P~i~~~~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 83 (504)
..|.+..|..|++.++-. +.-+++...++.. +.-+-||...+..+++ +++|+|.-.|+.- +..-.
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH~ 202 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGHS 202 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCcc
Confidence 789999999999999887 3333444444321 2335678889999984 8999999999853 55556
Q ss_pred CccccEEEeCCC
Q 042677 84 GGFGPIRINNRI 95 (504)
Q Consensus 84 Gl~G~liV~~~~ 95 (504)
.|.|.++|.+++
T Consensus 203 ~M~~~v~vvs~~ 214 (247)
T COG1622 203 FMRFKVIVVSQE 214 (247)
T ss_pred cceEEEEEEcHH
Confidence 699999999844
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=76.82 E-value=12 Score=29.16 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=34.7
Q ss_pred EEEEEEecCCCeeEEEEE-cCc--eeeEeecCCCcccc--------eeeceEEEcCCcEEEEEEEecCC---CceeEEEE
Q 042677 168 YRFRISNVGTAWSFNFRI-QNH--RMVLVETEGSYTNK--------IKLDSLDVHVGQSYSVLVTADKN---PADYYIVA 233 (504)
Q Consensus 168 ~rlRliNa~~~~~~~~~i-~gh--~~~via~DG~~~~p--------~~~d~v~l~~geR~dv~v~~~~~---~g~y~i~~ 233 (504)
..|++.|.+... ..|.+ .|+ .|.|...+|..+-- .......|.|||...+-.+.+.. +|.|.+.+
T Consensus 4 ~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 456666666644 34444 233 34444455554421 13457889999999999988763 79998864
No 79
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.44 E-value=12 Score=35.40 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=55.9
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+.+.+ ..|. |+|-+.+- . +.+-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViHs-------f~ip~~~~-----------------k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIHS-------WTVPSLGV-----------------K---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-cccc-------eeccccCc-----------------e---eECCCCcceeEEEEeCCCE
Confidence 45678999999999999965 4454 44433210 1 2334788888999999999
Q ss_pred eeeeeeccchh-hhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLKN-WHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~H-~~~Gm~~~~~V~~~~ 480 (504)
.+...|.-+-. -|..|-..++|..++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHH
Confidence 99999986543 477788888887654
No 80
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=71.53 E-value=28 Score=25.79 Aligned_cols=65 Identities=26% Similarity=0.310 Sum_probs=37.3
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEe
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVAS 234 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~ 234 (504)
-.+++++|+++++.+-+.+. +..+.|...+|..+....-.. -..+..-.+.+.+. .+|+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 46899999999998877765 223556666654332211111 01122233334454 6899998864
No 81
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=71.12 E-value=30 Score=35.20 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=43.9
Q ss_pred cceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEec
Q 042677 157 HESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASP 235 (504)
Q Consensus 157 ~p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~ 235 (504)
+..++|++|+ ++|.+.|.+... +.|++++ |..+. ...=.|.||.+..+.+.+ .||+|.+.|..
T Consensus 43 p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~ 105 (375)
T PRK10378 43 PMTLTVNAGK-TQFIIQNHSQKA--------LEWEILK--GVMVV---EERENIAPGFSQKMTANL--QPGEYDMTCGL 105 (375)
T ss_pred cCceeeCCCC-EEEEEEeCCCCc--------ceEEeec--ccccc---ccccccCCCCceEEEEec--CCceEEeecCc
Confidence 4789999996 999999999865 3444442 22110 011268999888877766 49999999953
No 82
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.29 E-value=38 Score=31.10 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=55.2
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.+++.+...+ ..|.|.+-.... .+|.+ ||-...+.|.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp~l~~------------------------k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVPDLNL------------------------KMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceeccccCc------------------------eeecC---CCceEEEEEEcCCCEEE
Confidence 477899999999888764 446555432211 23433 78889999999999999
Q ss_pred eeeeccch-hhhhccEEEEEEecCC
Q 042677 457 NLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 457 ~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
..-|.-.= -.|..|-..++|.+++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999654 3477788888887664
No 83
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=68.18 E-value=18 Score=34.16 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=55.4
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
-+.++.|+.|++.+...+-. | .|+|-+.+ ..+|.+ ||-...+.|++|.||.+
T Consensus 140 el~lP~g~pV~~~ltS~DVi-H-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM-N-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh-h-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 36789999999999887533 5 45554332 134555 68888999999999999
Q ss_pred eeeeccch-hhhhccEEEEEEecCC
Q 042677 457 NLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 457 ~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.-.|--.= -.|..|.+.++|..++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHH
Confidence 99997533 2467788888887654
No 84
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=65.37 E-value=13 Score=28.97 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=32.1
Q ss_pred eEEEEEEeCCCCCeeeeeC-CcCCC----------CCCCCCCCccc----CCcCCCCCeEEEEEEeCCC---ceeee
Q 042677 14 MIHVNVFNKMDEPLLFTWN-GIQQR----------LNSWQDGVSGT----NCPIQPGTNWTYVFQTKDQ---IGSFF 72 (504)
Q Consensus 14 ~v~i~v~N~l~~~~siH~H-G~~~~----------~~~~~DG~~~~----~~~i~pg~~~~y~~~~~~~---~Gt~w 72 (504)
.+.++|+|....+.+|.+. |.... .=-|++|-... ...|.||++.+|++..+.. +|+|.
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 3567777777766666654 22110 11356776553 4569999999999999643 68885
No 85
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=64.97 E-value=68 Score=28.92 Aligned_cols=96 Identities=9% Similarity=-0.069 Sum_probs=57.1
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeecccc-CCccc---cCcCCC--CCCCcccEEEeCCCcEEEEEEE
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGD-WNPQL---RSRYNL--YDPVVRSTVQVYPGAWTAVYAY 449 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~-~~~~~---~~~~~~--~~p~~rDTv~vp~~g~~~irf~ 449 (504)
..+.++.|-.|.+.|.|.+.++| .+-|+..+... ..+.- ...++. ..+.--..=-+..|.....-+.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 45778999999999999998876 44455443210 00000 000000 0000000111223445455555
Q ss_pred ecCceeeeeeeccchhhhhccEEEEEEec
Q 042677 450 LDNPGMWNLRSQLLKNWHLGQELYVRVYD 478 (504)
Q Consensus 450 adnpG~w~~HCHil~H~~~Gm~~~~~V~~ 478 (504)
.--||.+.+=|=+.-|...||-..+.|-.
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 56899999999999999999998887753
No 86
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=63.71 E-value=23 Score=33.21 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|+.|++.+...+- .| .|+|=+.+ ..+|.+ ||-...+.|.++.||.+
T Consensus 131 ~l~iP~g~~v~~~ltS~DV-iH-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT-MT-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCch-hh-------hhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEE
Confidence 3678999999999988753 34 45553321 145655 78888999999999999
Q ss_pred eeeeccch-hhhhccEEEEEEecCCC
Q 042677 457 NLRSQLLK-NWHLGQELYVRVYDADP 481 (504)
Q Consensus 457 ~~HCHil~-H~~~Gm~~~~~V~~~~~ 481 (504)
--.|=-.= --|.-|.+.++|..+++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 99997432 34677888888876653
No 87
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=63.70 E-value=69 Score=25.03 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=39.9
Q ss_pred EEEecCCEE--EEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceE-EEcCCcEEEEEEEecC-CCceeEEEEec
Q 042677 160 FTVTKGKTY--RFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSL-DVHVGQSYSVLVTADK-NPADYYIVASP 235 (504)
Q Consensus 160 ~~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~l~~geR~dv~v~~~~-~~g~y~i~~~~ 235 (504)
-.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+.+.... .+|.|.|++..
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 356677766 577899987653333332 23355444 33344 6899999988888753 57888887764
No 88
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=63.51 E-value=43 Score=29.65 Aligned_cols=76 Identities=16% Similarity=0.256 Sum_probs=52.4
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
.+.++.|..|++.+...+- .|.|.+-.... ..|.+ ||-...+.|.++.||.+
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV-IHSF~VP~lgv------------------------K~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV-IHSWSVPSLGI------------------------KADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc-ceeeeccccCc------------------------eeecc---CCceEEEEEecCCCeEE
Confidence 4678999999998887754 37655432211 23433 67777889999999999
Q ss_pred eeeeccch-hhhhccEEEEEEecCC
Q 042677 457 NLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 457 ~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
...|.-+= --|..|-..++|..++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~ 150 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPE 150 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHH
Confidence 99999543 3355677777776543
No 89
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=63.02 E-value=26 Score=33.14 Aligned_cols=78 Identities=13% Similarity=0.099 Sum_probs=57.3
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+...+-. |.|+|-+.|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCce
Confidence 3457889999999999887643 5677755431 23433 788888999999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+...|.-+= -.|..|-..++|..++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~ 217 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHH
Confidence 9999998543 3477888888887654
No 90
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=62.65 E-value=21 Score=29.20 Aligned_cols=69 Identities=16% Similarity=0.376 Sum_probs=45.8
Q ss_pred EEEEEeCCCCCeeeeeCCcCCCCCCCCC-CCcccCCcCCCCCeEEEEEEeCCCceeeeeecchhhhhhCCccccEEEeCC
Q 042677 16 HVNVFNKMDEPLLFTWNGIQQRLNSWQD-GVSGTNCPIQPGTNWTYVFQTKDQIGSFFYFPSINFQKAGGGFGPIRINNR 94 (504)
Q Consensus 16 ~i~v~N~l~~~~siH~HG~~~~~~~~~D-G~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 94 (504)
.|.|+|.|.....|..|=-.- .-| | ...+.||+.+...|.. +-.|+-.|.|+... .....+..+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~----d~Dlg----~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSK----DDDLG----WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCC----CccCC----CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 488999996666666665421 112 2 2458999999999984 55688888999865 11113566777653
No 91
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=61.72 E-value=23 Score=28.17 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=40.7
Q ss_pred EEecCCEEEEEEE--ecCCCeeEEEEEcCc--eeeEeecCCCcccceeeceE-EEcCCcEEEEEEEecCC--CceeEEEE
Q 042677 161 TVTKGKTYRFRIS--NVGTAWSFNFRIQNH--RMVLVETEGSYTNKIKLDSL-DVHVGQSYSVLVTADKN--PADYYIVA 233 (504)
Q Consensus 161 ~v~~G~~~rlRli--Na~~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~v-~l~~geR~dv~v~~~~~--~g~y~i~~ 233 (504)
.-+|||++.+|++ +..... -...+. .++|..-+|..+.- ..+ .......++..+..+.+ .|.|.|++
T Consensus 10 iYrPGetV~~~~~~~~~~~~~---~~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDNDF---KPPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECTTC---SCESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccccc---ccccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 3479999999998 666210 011222 35566666654422 222 34667888888887654 59999998
Q ss_pred ecc
Q 042677 234 SPK 236 (504)
Q Consensus 234 ~~~ 236 (504)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 863
No 92
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=60.28 E-value=97 Score=25.60 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=14.5
Q ss_pred EEEEEEecCCC-eeEEEEEcCce
Q 042677 168 YRFRISNVGTA-WSFNFRIQNHR 189 (504)
Q Consensus 168 ~rlRliNa~~~-~~~~~~i~gh~ 189 (504)
-++|++|++.. ..+.+.++|..
T Consensus 2 a~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 2 ARVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred cEEEEEEcCCCCccEEEEECCEE
Confidence 36788888775 46666665544
No 93
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=59.22 E-value=39 Score=31.88 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=55.5
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCcee
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
+.+.++.|+.|++.+...+-. |.|+|-+.| ...|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------ccccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 467899999999998887643 456664432 123443 6888889999999999
Q ss_pred eeeeeccch-hhhhccEEEEEEecCC
Q 042677 456 WNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 456 w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
+..-|.-+- -.|.-|-..++|..++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~ 217 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLK 217 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHH
Confidence 999998543 2467787788877654
No 94
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=58.54 E-value=78 Score=23.93 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=30.4
Q ss_pred EecCCEE--EEEEEecCCCe--eEEEEEcCceeeEeecCCCc--ccceeeceEEEcCCcEEEEEEEe--cC--CCceeEE
Q 042677 162 VTKGKTY--RFRISNVGTAW--SFNFRIQNHRMVLVETEGSY--TNKIKLDSLDVHVGQSYSVLVTA--DK--NPADYYI 231 (504)
Q Consensus 162 v~~G~~~--rlRliNa~~~~--~~~~~i~gh~~~via~DG~~--~~p~~~d~v~l~~geR~dv~v~~--~~--~~g~y~i 231 (504)
|.+|+.. ++.+-|.+... ...+.+.. =+|=. ..|..+. .|.+|+...+-++. +. .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3566654 67788988643 23444332 22222 1333333 78999776666654 32 4799998
Q ss_pred EEec
Q 042677 232 VASP 235 (504)
Q Consensus 232 ~~~~ 235 (504)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 95
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.13 E-value=47 Score=31.42 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=55.4
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.+++.+...+-. |.|+|-+.|. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 4457899999999998887643 4555544321 23433 688888889999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.--|.-+= -.|.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLE 217 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHH
Confidence 9999998543 2467777778777554
No 96
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=56.36 E-value=66 Score=25.15 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=41.5
Q ss_pred CCCeEEEc---CCCeEEEEEEeCCCCCeeeeeCCcCCCCCCCCCCCcccCCcCCCCCeEEEEEEeCCCceeeeee
Q 042677 3 PGPLINCS---TDDMIHVNVFNKMDEPLLFTWNGIQQRLNSWQDGVSGTNCPIQPGTNWTYVFQTKDQIGSFFYF 74 (504)
Q Consensus 3 PgP~i~~~---~Gd~v~i~v~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~i~pg~~~~y~~~~~~~~Gt~wYH 74 (504)
+.|.+.++ ....|.|+|.|.......+....... ..+.+ .+..|.||++.+..|.+. ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 35666665 34589999999987777777665311 11111 156789999999999873 3334554
No 97
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=55.34 E-value=52 Score=31.08 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=54.8
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+.+.+ ..| .|+|-+.|- ..|. -||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~~~~-----------------k~da---iPG~~~~~~~~~~~~G 190 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD-VIH-------SWTVPSLGV-----------------KVDA---VPGRLNQIGFTITRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEeCC-ccc-------cccccccCc-----------------ceec---CCCceEEEEEEeCCCE
Confidence 34578999999999999965 445 444433321 2233 3788888899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+..-|--+= -.|.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00008 191 VFYGQCSEICGANHSFMPIVLEAVDTK 217 (228)
T ss_pred EEEEEChhhcCcCccCceeEEEEECHH
Confidence 9999987543 3467777788877654
No 98
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=52.28 E-value=1.3e+02 Score=25.35 Aligned_cols=63 Identities=13% Similarity=0.209 Sum_probs=38.9
Q ss_pred EEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc-cceeeceEEEcCCcEEEEEEEecCCCc
Q 042677 160 FTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT-NKIKLDSLDVHVGQSYSVLVTADKNPA 227 (504)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~~geR~dv~v~~~~~~g 227 (504)
+.+.....|+|.+...+. ..|.|+|.. |+..++..- .+.....+.|..|++|.+.|...+..+
T Consensus 52 i~~~~~G~y~f~~~~~~~---~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITSDDG---ARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEcCCc---EEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 555555669999854443 577888864 444443321 123344688888888888887754333
No 99
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=51.44 E-value=1e+02 Score=26.06 Aligned_cols=61 Identities=13% Similarity=0.243 Sum_probs=42.3
Q ss_pred eEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc-------cceeeceEEEcCCcEEEEEEEecC
Q 042677 159 SFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT-------NKIKLDSLDVHVGQSYSVLVTADK 224 (504)
Q Consensus 159 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~l~~geR~dv~v~~~~ 224 (504)
.+++..-..|+|++-.-+. .+|.|+|..+ ++.++..- .+....++.|-.|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d~---~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDDG---ARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESSE---EEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEeccc---EEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 3677677789999984443 6778998874 55565432 345567888999999999998754
No 100
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.76 E-value=71 Score=30.14 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=55.8
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+...+-. |.|+|-+.| ...|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDVL--------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecchh--------hcccccccC-----------------ceeEec---CCceEEEEEEEcccc
Confidence 3567899999999988887643 456664432 133443 688888999999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.--|--+= --|.-|-..++|..++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLK 217 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHH
Confidence 9999988543 2467777778777554
No 101
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.75 E-value=68 Score=29.44 Aligned_cols=60 Identities=12% Similarity=0.242 Sum_probs=43.4
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+++||++..... .|.|.+.+...+ +..-||..-.+.++++ .+|.|..+|...
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~-~~G~y~g~C~e~ 175 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV--IHSFSVPDLNLK----------------MDAIPGRINHLFFCPD-RHGVFVGYCSEL 175 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc--ccceeccccCce----------------eecCCCceEEEEEEcC-CCEEEEEEeehh
Confidence 35889999999999875543 445555544332 3445788888888887 699999999853
No 102
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=49.48 E-value=1.3e+02 Score=23.83 Aligned_cols=59 Identities=24% Similarity=0.250 Sum_probs=37.0
Q ss_pred EEecCCEE--EEEEEecCCCe-eEEEEEcC---ceeeEeecCCCcccceeeceEEEcCCcEEEEEEEec-C-CCceeE
Q 042677 161 TVTKGKTY--RFRISNVGTAW-SFNFRIQN---HRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTAD-K-NPADYY 230 (504)
Q Consensus 161 ~v~~G~~~--rlRliNa~~~~-~~~~~i~g---h~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~-~-~~g~y~ 230 (504)
.+..|++| .+.|.|.|... .+.+.... ..|.+ .| ..-.|.||+..++.|.+. . +.|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEE
Confidence 56677777 68999999865 33333332 11222 22 233599999999999986 3 457664
No 103
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=47.73 E-value=22 Score=29.40 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=33.4
Q ss_pred EEEEEeCCCCC---eeeeeCCcCCCCC---CCCCCCcccCCcCCCCCeEEEEEEeC--CCcee
Q 042677 16 HVNVFNKMDEP---LLFTWNGIQQRLN---SWQDGVSGTNCPIQPGTNWTYVFQTK--DQIGS 70 (504)
Q Consensus 16 ~i~v~N~l~~~---~siH~HG~~~~~~---~~~DG~~~~~~~i~pg~~~~y~~~~~--~~~Gt 70 (504)
.|++.|....+ .+=|||=-...+. -.-+||-|-|.-|.||++|+|.=-.+ .+.|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 57888887544 4679983322111 11244444488899999999975432 44666
No 104
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=47.12 E-value=76 Score=26.23 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred EEEEEEEecCCCe-eEEEEEcCc-eeeEeecCCCcccceeeceEEEcCCcEEEEEEEec
Q 042677 167 TYRFRISNVGTAW-SFNFRIQNH-RMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTAD 223 (504)
Q Consensus 167 ~~rlRliNa~~~~-~~~~~i~gh-~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~ 223 (504)
.|+++|+|.+... .+.+.++|. .+++ .- ....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~~-~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAEL--------QG-PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE---------E-S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEE--------EC-CCcceEECCCCEEEEEEEEE
Confidence 5899999999865 777777774 2222 11 33568889999888777653
No 105
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.07 E-value=79 Score=29.85 Aligned_cols=78 Identities=12% Similarity=0.093 Sum_probs=55.3
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.+++.+...+-. |.|+|-+.| ...|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G 190 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAEDVL--------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEecccc--------ccccccccC-----------------ceEEcc---CCcceeEEEEeCCcE
Confidence 3467899999999998887533 455554332 123443 678888899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.--|.-+- --|..|-..++|..++
T Consensus 191 ~~~g~C~e~CG~~Hs~M~~~v~vv~~~ 217 (228)
T MTH00076 191 VYYGQCSEICGANHSFMPIVVEATPLN 217 (228)
T ss_pred EEEEEChhhcCccccCCceEEEEeCHH
Confidence 9999998543 3477787788877554
No 106
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=45.84 E-value=90 Score=29.70 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=55.7
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+... +..|.|.+- +.| ..+|.+ ||-...+.|.++.||
T Consensus 150 ~n~lvlP~~~~v~~~~tS~-DViHsf~iP-------~lg-----------------vK~Dai---PG~~n~~~~~~~~~G 201 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA-DVLHSFAVP-------SLG-----------------LKIDAV---PGRLNQTGFFIKRPG 201 (240)
T ss_pred CceEEEecCCEEEEEEEcC-Ccccceeec-------ccC-----------------ceeecC---CCcceeEEEEcCCCE
Confidence 3457899999999988877 455655443 221 134544 677778899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.-.|.-+- .-|.-|-..++|.+++
T Consensus 202 ~y~g~C~e~CG~~Hs~M~~~v~vv~~~ 228 (240)
T MTH00023 202 VFYGQCSEICGANHSFMPIVIEAVSLD 228 (240)
T ss_pred EEEEEchhhcCcCccCCeEEEEEECHH
Confidence 9999998644 3467777788887654
No 107
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.54 E-value=67 Score=30.27 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=55.9
Q ss_pred ceEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc
Q 042677 374 GVFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP 453 (504)
Q Consensus 374 ~~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 453 (504)
..+.+.++.|+.|++.+...+ ..|. |+|-+.+ ..+|.+ ||-...+.|.++.|
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~ 189 (226)
T MTH00139 138 VDNRLVLPYKSNIRALITAAD-VLHS-------WTVPSLG-----------------VKIDAV---PGRLNQVGFFINRP 189 (226)
T ss_pred cCceEEEecCCEEEEEEecCc-cccc-------eeccccC-----------------ccccCC---CCcEEEEEEEcCCC
Confidence 345678999999998887764 4454 4443332 145655 68888899999999
Q ss_pred eeeeeeeccch-hhhhccEEEEEEecCC
Q 042677 454 GMWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 454 G~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
|.+.--|--+= --|.-|-..++|.+++
T Consensus 190 G~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (226)
T MTH00139 190 GVFYGQCSEICGANHSFMPIVVEAISPK 217 (226)
T ss_pred EEEEEEChhhcCcCcCCCeEEEEEeCHH
Confidence 99999997543 3466777788877654
No 108
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.97 E-value=68 Score=30.26 Aligned_cols=60 Identities=10% Similarity=0.175 Sum_probs=43.8
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++.+... .|.|.+.+...+ +..-||..-.+.++++ .+|.|...|...
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~ 199 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--IHSWTVPSLGVK----------------VDAIPGRLNQLSFEPK-RPGVFYGQCSEI 199 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--ccceeccccCce----------------eECCCCcceeEEEEeC-CCEEEEEECccc
Confidence 57899999999999988554 345555444332 3455788888888887 699999998753
No 109
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=41.30 E-value=46 Score=22.86 Aligned_cols=41 Identities=10% Similarity=-0.022 Sum_probs=30.7
Q ss_pred CCCCcccEEE-eCCCcEEEEEEEecCceeeeeeeccchhhhh
Q 042677 428 YDPVVRSTVQ-VYPGAWTAVYAYLDNPGMWNLRSQLLKNWHL 468 (504)
Q Consensus 428 ~~p~~rDTv~-vp~~g~~~irf~adnpG~w~~HCHil~H~~~ 468 (504)
..|..+-+.. .+.|....++++...-..+=+||..+.|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3454444333 5567888899999999999999999988754
No 110
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.85 E-value=1.2e+02 Score=28.72 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=54.2
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.+++.+...+ ..|.|. |-+.| ...|.+ ||....+.|.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViHsf~-------iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD-VLHSWA-------VPSLG-----------------VKMDAV---PGRLNQTTFFISRTG 190 (229)
T ss_pred CceEEEecCeEEEEEEEECC-cccccc-------ccccC-----------------ceeecC---CCceEEEEEEcCCCE
Confidence 34578999999999888774 446444 32221 134544 688888999999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+..-|--+- -.|.-|-..++|..++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~ 217 (229)
T MTH00038 191 LFYGQCSEICGANHSFMPIVIESVPFN 217 (229)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 9999998543 2356677777776554
No 111
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=40.32 E-value=72 Score=25.28 Aligned_cols=50 Identities=16% Similarity=0.323 Sum_probs=26.2
Q ss_pred EEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc--c--ceeeceEEEcCCcEEEEE
Q 042677 167 TYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT--N--KIKLDSLDVHVGQSYSVL 219 (504)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--p~~~d~v~l~~geR~dv~ 219 (504)
.|++||-|.+... +.|-...+.|...||... + .+.-..=.|.|||.+...
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 4899999998863 455555566665555321 1 112223347888866554
No 112
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.20 E-value=1.2e+02 Score=28.69 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=54.8
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+.+.+ ..| .|+|-+.| ...|.+ ||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~D-ViH-------sf~vp~lg-----------------~k~dai---PG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAAD-VLH-------SFAVPSLS-----------------VKIDAV---PGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCc-hhc-------cccccccC-----------------ceeEcc---CCceEeEEEEeCCCE
Confidence 45678999999999999874 444 44443332 123433 678888899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.--|.-+= -.|.-|-..++|..++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~ 221 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLD 221 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHH
Confidence 9999998533 3467777788877554
No 113
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=38.50 E-value=1.1e+02 Score=31.80 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred EEEeCCCcEEEEEEEecCceeeeee----eccchhhhhccE
Q 042677 435 TVQVYPGAWTAVYAYLDNPGMWNLR----SQLLKNWHLGQE 471 (504)
Q Consensus 435 Tv~vp~~g~~~irf~adnpG~w~~H----CHil~H~~~Gm~ 471 (504)
-+.+-|....++-|++|-||+|++- ||.++-|..|-|
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 3456677888999999999998754 777544444433
No 114
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.07 E-value=1.1e+02 Score=28.97 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=54.3
Q ss_pred EEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCcee
Q 042677 376 FVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGM 455 (504)
Q Consensus 376 ~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~ 455 (504)
+.+.++.|+.|++.+...+ ..|.| +|=+.| ..+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHsf-------~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIHSW-------TVPSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhhhe-------eccccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 4578999999999888775 44544 443221 134544 6888889999999999
Q ss_pred eeeeeccch-hhhhccEEEEEEecCC
Q 042677 456 WNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 456 w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
+.--|--+= .-|.-|-..++|..++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~ 217 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVN 217 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHH
Confidence 999998543 3466777778777554
No 115
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.96 E-value=1.1e+02 Score=28.77 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=42.5
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++.+... .|.+.+.+..++ +..-||..-.+.+.++ .+|.|...|+..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEI 199 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhh
Confidence 46888999999999888554 345555444332 3344788888888887 699999999753
No 116
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=37.65 E-value=37 Score=29.54 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=21.4
Q ss_pred eCCCcEEEEEEEe-cCc---eeeeeeeccc
Q 042677 438 VYPGAWTAVYAYL-DNP---GMWNLRSQLL 463 (504)
Q Consensus 438 vp~~g~~~irf~a-dnp---G~w~~HCHil 463 (504)
|+||..+.|.++. .|| |+|.|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 6789999999964 576 8999999863
No 117
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=37.50 E-value=99 Score=29.14 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=42.7
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++...... |.|.+.. ..-....-||..-.+-++++ .+|.|...|...
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--HSF~VP~----------------l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--NSFFIPQ----------------LGSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--hhhhhhh----------------cCCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 578999999999988776652 3333332 22233455888888889888 699999999853
No 118
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=36.95 E-value=50 Score=28.05 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCe---eeeeCCcCCCC-CCCCCCCccc--CCcCCCCCeEEEE
Q 042677 16 HVNVFNKMDEPL---LFTWNGIQQRL-NSWQDGVSGT--NCPIQPGTNWTYV 61 (504)
Q Consensus 16 ~i~v~N~l~~~~---siH~HG~~~~~-~~~~DG~~~~--~~~i~pg~~~~y~ 61 (504)
.|++.|....+. +=||-=....+ .....|..++ |.-|.||++|.|.
T Consensus 34 ~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 34 TITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 578889775543 45664111110 1112333334 5558999988885
No 119
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=36.85 E-value=1.9e+02 Score=25.66 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=41.2
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|..+||++.-+.. .|.|.+....+.+ ..-||..-.+.+.+. .+|.|...|...
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsEl 132 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEM 132 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchh
Confidence 45788999988888766554 3566666555433 233566666667666 699999999853
No 120
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.72 E-value=96 Score=29.95 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=55.4
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|..+++.+...+ ..| .|+|=+.| ..+|.+ ||-...+.|.++.||
T Consensus 173 dn~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G 224 (262)
T MTH00027 173 DNRLILPVDTNVRVLITAAD-VLH-------SWTVPSLA-----------------VKMDAV---PGRINETGFLIKRPG 224 (262)
T ss_pred eceEEEeeCcEEEEEEEcCc-ccc-------ceeccccc-----------------CcccCC---CCceeeEEEEcCCcE
Confidence 34678999999998887764 445 44443332 134554 577778899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.-.|.-+= .-|..|-..++|..++
T Consensus 225 ~y~g~CsE~CG~~Hs~Mpi~v~vv~~~ 251 (262)
T MTH00027 225 IFYGQCSEICGANHSFMPIVVESVSLS 251 (262)
T ss_pred EEEEEcchhcCcCcCCCeEEEEEECHH
Confidence 9999999643 3477888888887654
No 121
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=36.34 E-value=1.4e+02 Score=29.59 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=53.2
Q ss_pred EEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCceee
Q 042677 377 VATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPGMW 456 (504)
Q Consensus 377 ~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 456 (504)
-+.++.|+.|++.+...+-+ | .|+|-+.+. ..|.+ ||-...+.|.+|.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DVi-H-------SF~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM-N-------SFFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh-h-------hhhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEE
Confidence 37789999999999988643 4 455533321 23433 68888999999999999
Q ss_pred eeeeccch-hhhhccEEEEEEec
Q 042677 457 NLRSQLLK-NWHLGQELYVRVYD 478 (504)
Q Consensus 457 ~~HCHil~-H~~~Gm~~~~~V~~ 478 (504)
.-.|--.- .-|..|.+.++|..
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~~ 226 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIATP 226 (315)
T ss_pred EEEChhhcCccccCCeEEEEEEC
Confidence 99998543 44677777777763
No 122
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=35.44 E-value=1.2e+02 Score=22.15 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=26.1
Q ss_pred EEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEE
Q 042677 160 FTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYS 217 (504)
Q Consensus 160 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~d 217 (504)
+++.+|+..+||.-... .+.+..-.++|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 56778888888854432 3555556666643 442 2234455555553
No 123
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.79 E-value=1.2e+02 Score=28.48 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEec
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASP 235 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~ 235 (504)
..+.+..|+.+||++.-... .|.|.+.....+ +..-||..-.+.+.++ .+|.|...|+.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--LHSWAVPSLGLK----------------TDAIPGRLNQTTLMST-RPGLYYGQCSE 198 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--cccccccccccc----------------eecCCCceEEEEEecC-CcEEEEEECcc
Confidence 46788899988888876654 344444443322 3344788888888877 69999999875
No 124
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=33.31 E-value=19 Score=32.14 Aligned_cols=28 Identities=7% Similarity=0.202 Sum_probs=24.0
Q ss_pred EEcCCCeEEEEEEeCCCCCeeeeeCCcC
Q 042677 8 NCSTDDMIHVNVFNKMDEPLLFTWNGIQ 35 (504)
Q Consensus 8 ~~~~Gd~v~i~v~N~l~~~~siH~HG~~ 35 (504)
..+-++.+.+.+.|+++..+++||||+-
T Consensus 72 ~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 72 PGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred cccCCCCcEEeccchhheeeecccceEE
Confidence 3456788999999999999999999983
No 125
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.14 E-value=1.2e+02 Score=28.54 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=41.6
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEec
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASP 235 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~ 235 (504)
..+.+..|+.+||++.-... .|.|.+.+..+ + +..-||.+-.+.+.++ .+|.|...|..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~~-------------k---~da~PG~~~~~~~~~~-~~G~~~g~C~e 198 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--LHSWAVPALGV-------------K---MDAVPGRLNQTAFIAS-RPGVFYGQCSE 198 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--ccceeccccCC-------------c---cccCCCceEEEEEEeC-CceEEEEEChh
Confidence 46888999988888866554 34455544432 2 2345788888888887 69999999975
No 126
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=31.29 E-value=1.4e+02 Score=27.94 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=42.6
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++..+.. .|.|.+ |.-.-.+..-||..-.+-++++ .+|.|...|...
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~v----------------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~ 189 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWI----------------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANF 189 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhc----------------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhh
Confidence 56889999988888876654 333333 3222233455888888999988 699999999853
No 127
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=31.29 E-value=1.2e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc--c--ceeeceEEEcCCcEEEEE
Q 042677 167 TYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT--N--KIKLDSLDVHVGQSYSVL 219 (504)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--p~~~d~v~l~~geR~dv~ 219 (504)
.|++||.|.+.. .+.|-...+.|...||... + .+.-..=.|.|||.+...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 479999998764 3456666666766666532 1 122223347777766543
No 128
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=31.19 E-value=2.2e+02 Score=23.73 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=40.9
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccce----eeceEEEcCCcEEEEEEEecC--CCceeEE
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKI----KLDSLDVHVGQSYSVLVTADK--NPADYYI 231 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~----~~d~v~l~~geR~dv~v~~~~--~~g~y~i 231 (504)
+.-.+..|+.+++|+-=......-.+. -.+.+...+|..+-.. ....+....++++.+.++++. .+|+|.|
T Consensus 27 ~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i 103 (142)
T PF14524_consen 27 PTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSI 103 (142)
T ss_dssp S-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEE
T ss_pred EeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEE
Confidence 334577888888886544433322222 3456666777654221 122445555899999998875 5899999
Q ss_pred EEec
Q 042677 232 VASP 235 (504)
Q Consensus 232 ~~~~ 235 (504)
.+.-
T Consensus 104 ~v~l 107 (142)
T PF14524_consen 104 SVGL 107 (142)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 129
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.28 E-value=1.7e+02 Score=27.64 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=55.4
Q ss_pred eEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCce
Q 042677 375 VFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNPG 454 (504)
Q Consensus 375 ~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG 454 (504)
.+.+.++.|+.|++.+...+ ..|.| +|=+.| ...|.+ ||-...+.|.++.||
T Consensus 142 dn~l~lP~~~~v~~~itS~D-ViHSf-------~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G 193 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSSD-VIHSW-------ALPSLS-----------------IKMDAM---SGILSTLCYSFPMPG 193 (231)
T ss_pred eCceEeecCcEEEEEEEeCc-ccccc-------cccccC-----------------ceeecc---CCceEEEEEEEcCce
Confidence 34567999999999888875 34544 442221 134555 678888899999999
Q ss_pred eeeeeeccch-hhhhccEEEEEEecCC
Q 042677 455 MWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 455 ~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
.+.--|--.= -.|..|-..++|..++
T Consensus 194 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~ 220 (231)
T MTH00080 194 VFYGQCSEICGANHSFMPIAVEVTLLD 220 (231)
T ss_pred EEEEEehhhcCcCccCCEEEEEEECHH
Confidence 9999998432 3477888888887654
No 130
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.26 E-value=1.7e+02 Score=27.69 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=41.7
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEec
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASP 235 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~ 235 (504)
..+.+..|+.+||++..+.. .|.|.+....++ +..-||..-.+.+.++ .+|.|...|..
T Consensus 144 n~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~k----------------~daiPG~~~~~~~~~~-~~G~y~g~Cse 202 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--LHSFAVPSLSVK----------------IDAVPGRLNQTSFFIK-RPGVFYGQCSE 202 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--hccccccccCce----------------eEccCCceEeEEEEeC-CCEEEEEEChh
Confidence 46889999999999887744 344554444332 2344787777888877 68999999875
No 131
>PRK07440 hypothetical protein; Provisional
Probab=30.10 E-value=27 Score=26.13 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=24.1
Q ss_pred eeEeecCCCcccceeeceEEEcCCcEEEEEE
Q 042677 190 MVLVETEGSYTNKIKLDSLDVHVGQSYSVLV 220 (504)
Q Consensus 190 ~~via~DG~~~~p~~~d~v~l~~geR~dv~v 220 (504)
..++|.+|..+....-+...|..|.+++++=
T Consensus 35 ~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 35 LVAVEYNGEILHRQFWEQTQVQPGDRLEIVT 65 (70)
T ss_pred eEEEEECCEEeCHHHcCceecCCCCEEEEEE
Confidence 4478889988876666677789999998864
No 132
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.65 E-value=1.9e+02 Score=27.18 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=55.4
Q ss_pred ceEEEeeeCCcEEEEEEEeCCCCcceeeecCcceEEEeeccccCCccccCcCCCCCCCcccEEEeCCCcEEEEEEEecCc
Q 042677 374 GVFVATGIHRGWIEIVLKNELEVIDSWHLDGFGFYTVGYGIGDWNPQLRSRYNLYDPVVRSTVQVYPGAWTAVYAYLDNP 453 (504)
Q Consensus 374 ~~~~~~~~~g~~v~ivi~N~~~~~HP~HlHG~~F~Vv~~g~g~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnp 453 (504)
..+.+.++.|+.+++.+...+ ..|.| +|=+.| ...|.+ ||-...+.|.++.|
T Consensus 138 ~~n~l~lP~~~~v~~~~tS~D-ViHsf-------~vP~lg-----------------~k~dai---PG~~n~~~~~~~~~ 189 (225)
T MTH00168 138 VDNRLVLPMDSKIRVLVTSAD-VLHSW-------TLPSLG-----------------LKMDAV---PGRLNQLAFLSSRP 189 (225)
T ss_pred ecceEEEecCCEEEEEEEeCC-hhhcc-------cccccc-----------------ccccCC---CCeEEEEEEEcCCC
Confidence 345678999999999888875 34544 442221 134544 78888889999999
Q ss_pred eeeeeeeccch-hhhhccEEEEEEecCC
Q 042677 454 GMWNLRSQLLK-NWHLGQELYVRVYDAD 480 (504)
Q Consensus 454 G~w~~HCHil~-H~~~Gm~~~~~V~~~~ 480 (504)
|.+.--|.-+- -.|.-|-..++|..++
T Consensus 190 G~~~g~CsE~CG~~Hs~M~~~v~vv~~~ 217 (225)
T MTH00168 190 GSFYGQCSEICGANHSFMPIVVEFVPWE 217 (225)
T ss_pred EEEEEEcccccCcCcCCCeEEEEEeCHH
Confidence 99999998543 3467777778877554
No 133
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.17 E-value=2.1e+02 Score=27.07 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=41.0
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++.-... .|.+.+.+...+ +..-||..-.+.+.++ .+|.|..+|+..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~iP~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDV--LHSWTVPALGVK----------------MDAVPGRLNQATFIIS-RPGLYYGQCSEI 199 (230)
T ss_pred CeEEEecCCEEEEEEEcCcc--cccccccccCce----------------eEecCCceEEEEEEeC-CcEEEEEEchhh
Confidence 56888999988888765554 344444444332 3344777777778777 699999998753
No 134
>COG1470 Predicted membrane protein [Function unknown]
Probab=28.51 E-value=3.3e+02 Score=28.57 Aligned_cols=74 Identities=27% Similarity=0.383 Sum_probs=45.7
Q ss_pred ceEEEecCC--EEEEEEEecCCCe--eEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEE--EEecC--CCcee
Q 042677 158 ESFTVTKGK--TYRFRISNVGTAW--SFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVL--VTADK--NPADY 229 (504)
Q Consensus 158 p~~~v~~G~--~~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~--v~~~~--~~g~y 229 (504)
-.+++.+|+ ..+++|-|.|... -..+.+++-.=+=+.+|+. +.+. |.||+|-.|- ++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~-----~I~s--L~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDES-----TIPS--LEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcc-----cccc--cCCCCcceEEEEEEcCCCCCCCcE
Confidence 456777775 5688899988755 4556666554455555654 2232 4566655544 44543 47899
Q ss_pred EEEEeccCC
Q 042677 230 YIVASPKLS 238 (504)
Q Consensus 230 ~i~~~~~~~ 238 (504)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 988876543
No 135
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=28.14 E-value=4e+02 Score=23.11 Aligned_cols=83 Identities=23% Similarity=0.262 Sum_probs=53.2
Q ss_pred CeEEEccccCCCCCCCCCcceEEEe-cCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCccccee-------eceEEE
Q 042677 139 DWMLMNGKVSLMNPNTTEHESFTVT-KGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIK-------LDSLDV 210 (504)
Q Consensus 139 ~~~liNG~~~~~~~~~~~~p~~~v~-~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~v~l 210 (504)
++-.||.-+. +...-. --.+|.|.+=|.|... +.+++..++|+ +||..+.|.. .+.|.|
T Consensus 51 dFaIIndPg~---------i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l 117 (154)
T COG3354 51 DFAIINDPGQ---------IPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRL 117 (154)
T ss_pred cEEEecCCCC---------CccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEe
Confidence 4667776655 222221 1257899999999854 46777777775 5998876643 356889
Q ss_pred cCCcEE-EEEEEecCCCceeEEEEec
Q 042677 211 HVGQSY-SVLVTADKNPADYYIVASP 235 (504)
Q Consensus 211 ~~geR~-dv~v~~~~~~g~y~i~~~~ 235 (504)
.|||-- ++.+.-. ..|.-.+....
T Consensus 118 ~PG~Vg~ev~vn~~-lSGyhri~V~~ 142 (154)
T COG3354 118 SPGQVGREVTVNEA-LSGYHRIVVSL 142 (154)
T ss_pred cCCceeeEEEeccC-CCcceEEEEEc
Confidence 999988 6666543 34655565543
No 136
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=27.34 E-value=2.9e+02 Score=21.17 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=15.8
Q ss_pred EecCCEEEEEEEecCCCeeEEEEE
Q 042677 162 VTKGKTYRFRISNVGTAWSFNFRI 185 (504)
Q Consensus 162 v~~G~~~rlRliNa~~~~~~~~~i 185 (504)
.+.|++++|++-.--....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 567888888887755544444444
No 137
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=26.95 E-value=2.3e+02 Score=23.67 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=32.6
Q ss_pred EEcCCCeEEEEEEeCC---CCCeeeeeC----CcCCC-CCCCCCCCcccCCcCCCCCeEEEEEEeC
Q 042677 8 NCSTDDMIHVNVFNKM---DEPLLFTWN----GIQQR-LNSWQDGVSGTNCPIQPGTNWTYVFQTK 65 (504)
Q Consensus 8 ~~~~Gd~v~i~v~N~l---~~~~siH~H----G~~~~-~~~~~DG~~~~~~~i~pg~~~~y~~~~~ 65 (504)
.++.|..+.+.+.=.. ....+...| |+... ..+..||=-.+.|||.+|+.++|.+.++
T Consensus 23 ~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 23 VIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred EEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 4567777766665322 222333344 43222 1123455211379999999999999764
No 138
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.87 E-value=2.6e+02 Score=23.36 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=31.9
Q ss_pred EEcCCCeEEEEEEeCCC---C--CeeeeeC--CcCCCC-CCCCCCCc--ccCCcCCCCCeEEEEEEeC
Q 042677 8 NCSTDDMIHVNVFNKMD---E--PLLFTWN--GIQQRL-NSWQDGVS--GTNCPIQPGTNWTYVFQTK 65 (504)
Q Consensus 8 ~~~~Gd~v~i~v~N~l~---~--~~siH~H--G~~~~~-~~~~DG~~--~~~~~i~pg~~~~y~~~~~ 65 (504)
.++.|..+.+.+.=... . .+.+|+. |+.... ....|+=- ++.|||.+|+.++|.+.++
T Consensus 25 ~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 25 KLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred EEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 35667777766653321 1 2233332 543221 11234421 1369999999999999763
No 139
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.49 E-value=3.1e+02 Score=25.79 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=41.0
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++.-+.. .|.|.+..... + +..-||..-.+.+.++ .+|.|...|...
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~lg~-------------K---~DavPG~~n~~~~~~~-~~G~y~g~CsE~ 199 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDV--LHSWAVPSLGV-------------K---TDAVPGRLNQTSFITT-RPGVFYGQCSEI 199 (227)
T ss_pred ceEEEecCceEEEEEEecch--hhcccccccCc-------------e---eEecCCceEEEEEEEc-ccceEEEEeccc
Confidence 46888889888888866654 33444444332 2 3344788888888877 699999999853
No 140
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.23 E-value=2.1e+02 Score=21.49 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=24.0
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCC
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEG 197 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG 197 (504)
..+++..++.+++|+=|++. ..+.++|..+.+.+..|
T Consensus 30 ~~~~~~~~~~~~i~iGna~~---v~v~~nG~~~~~~~~~~ 66 (77)
T PF13464_consen 30 ETKTFEGKEPFRIRIGNAGA---VEVTVNGKPVDLLGPPG 66 (77)
T ss_pred cEEEEeCCCCEEEEEeCCCc---EEEEECCEECCCCCCCC
Confidence 45666667777778877776 46677776665544443
No 141
>COG3241 Azurin [Energy production and conversion]
Probab=22.94 E-value=99 Score=25.82 Aligned_cols=87 Identities=18% Similarity=0.281 Sum_probs=50.3
Q ss_pred eEEEccccCCCCCCCCCcceEEEecC-CEEEEEEEecCCCeeEEEEEcCceee--------EeecCC-------Ccccc-
Q 042677 140 WMLMNGKVSLMNPNTTEHESFTVTKG-KTYRFRISNVGTAWSFNFRIQNHRMV--------LVETEG-------SYTNK- 202 (504)
Q Consensus 140 ~~liNG~~~~~~~~~~~~p~~~v~~G-~~~rlRliNa~~~~~~~~~i~gh~~~--------via~DG-------~~~~p- 202 (504)
.+.-|.+..++. ..|+|..- +-+.+.+-..+...- .+-||++. -+..|| .|++|
T Consensus 28 ti~~NDqMqFnt------n~I~v~k~Ck~ftitL~HtG~~pk---~vMGHNwVltk~~DMqgV~~dG~~a~ld~dYvkpd 98 (151)
T COG3241 28 TIESNDQMQFNT------NDIQVSKACKEFTITLKHTGTQPK---RVMGHNWVLTKTEDMQGVFKDGVGAALDTDYVKPD 98 (151)
T ss_pred EeecCcceeecc------cceeeeecceEEEEEeecCCCCCc---cccccceEEeechhhhHHHHhhhhhhhccccCCCC
Confidence 344455655442 23444332 234566666665332 34455543 233344 45554
Q ss_pred ---eeeceEEEcCCcEEEEEEEecC-CCc-eeEEEEec
Q 042677 203 ---IKLDSLDVHVGQSYSVLVTADK-NPA-DYYIVASP 235 (504)
Q Consensus 203 ---~~~d~v~l~~geR~dv~v~~~~-~~g-~y~i~~~~ 235 (504)
+...+-.|+.|||-++-++..+ ..| +|.+.|.-
T Consensus 99 D~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCtF 136 (151)
T COG3241 99 DARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCTF 136 (151)
T ss_pred CcceEEEeeeecCCccceEecCHHHhcCCceEEEEEec
Confidence 3456788999999999998754 345 89988873
No 142
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.45 E-value=3.2e+02 Score=25.76 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=41.6
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++..+.. .|.|.+.....+ +..-||..-.+.+.++ .+|.|...|...
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~k----------------~davPG~~~~~~~~~~-~~G~y~g~Cse~ 199 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--IHSWTVPSLGVK----------------VDAVPGRLNQLNFLIN-RPGLFFGQCSEI 199 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--hhheeccccCCe----------------eecCCCceEEEEEEEc-CceEEEEEeech
Confidence 46888999988888765544 445555443332 2334777778888887 699999999853
No 143
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=22.29 E-value=2.8e+02 Score=28.97 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=32.4
Q ss_pred EEEEEEEecCCCe-eEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEec
Q 042677 167 TYRFRISNVGTAW-SFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTAD 223 (504)
Q Consensus 167 ~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~ 223 (504)
.|+++|.|.+... .+.+.++|.+ |..++- ..+.+.|.+||+.++.|...
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 5899999998754 6677776642 221111 11278999999987777654
No 144
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=21.79 E-value=94 Score=22.24 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=30.3
Q ss_pred EEEEecCCCeeEEEEEcCce-eeEeecCCCcccceeeceEEEcCCcEEEEEEEec
Q 042677 170 FRISNVGTAWSFNFRIQNHR-MVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTAD 223 (504)
Q Consensus 170 lRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~ 223 (504)
.++.+.+......+.+.++. +.. .+.+.....+.|.+|+++-+.+++.
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~~l~a------~it~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGETLTA------RITPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp EEEEESSSEEEEEEEETTSEEEEE------EEEHHHHHHCT-STT-EEEEEE-GG
T ss_pred EEEEECCCeEEEEEEECCCCEEEE------EEcHHHHHHcCCCCCCEEEEEEehh
Confidence 45566666666677777776 444 2234456678899999999999865
No 145
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=21.75 E-value=2.1e+02 Score=28.45 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=43.3
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEecc
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASPK 236 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~~ 236 (504)
..+.+..|+.+||++...... |.|.|. ...-.+..-||..-.+-+.++ .+|.|...|...
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--HSF~IP----------------~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEy 210 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--NSFFIP----------------RLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASY 210 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--hhhhhh----------------hhCCeeecCCCceeEEEEEcC-CCEEEEEEChhh
Confidence 568899999999998877653 333333 333344566788888888888 699999999854
No 146
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.01 E-value=3.2e+02 Score=25.76 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.4
Q ss_pred ceEEEecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcccceeeceEEEcCCcEEEEEEEecCCCceeEEEEec
Q 042677 158 ESFTVTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYTNKIKLDSLDVHVGQSYSVLVTADKNPADYYIVASP 235 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~~geR~dv~v~~~~~~g~y~i~~~~ 235 (504)
..+.+..|+.+||++.-... .|.|.+....+++ ..-||..-.+.+.++ .+|.|...|..
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg~k~----------------da~PG~~n~~~~~~~-~~G~~~g~C~e 198 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDV--LHSWAVPSLGIKT----------------DAIPGRLNQTSFIAS-RPGVYYGQCSE 198 (228)
T ss_pred ceEEEecCCEEEEEEEeccc--cccccccccCceE----------------EccCCcceeEEEEeC-CcEEEEEEChh
Confidence 46889999988888876554 3455554443322 334677777777777 68999998875
No 147
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=20.86 E-value=1.5e+02 Score=19.38 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=14.8
Q ss_pred ceEEEecCCEEEEEEEecC
Q 042677 158 ESFTVTKGKTYRFRISNVG 176 (504)
Q Consensus 158 p~~~v~~G~~~rlRliNa~ 176 (504)
...-...|+.||||+-.++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 4556678999999997665
No 148
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=20.43 E-value=51 Score=28.08 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=27.2
Q ss_pred EecCCEEEEEEEecCCCeeEEEEEcCceeeEeecCCCcc
Q 042677 162 VTKGKTYRFRISNVGTAWSFNFRIQNHRMVLVETEGSYT 200 (504)
Q Consensus 162 v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~ 200 (504)
-+.|.++||||+...-.. +|-=.-|.++++++|.+.+
T Consensus 120 Y~~GaRVrlRl~DlELs~--rFLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSE--RFLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhh--hhhcCCccceEEecceeee
Confidence 357899999999875433 3333457899999998765
No 149
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=20.00 E-value=5.3e+02 Score=21.59 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=38.0
Q ss_pred EEEEEEEecCCCeeEEEEEcCc-eeeEeecCCCcccc------eeeceEEEcCCcEEEEEEEec
Q 042677 167 TYRFRISNVGTAWSFNFRIQNH-RMVLVETEGSYTNK------IKLDSLDVHVGQSYSVLVTAD 223 (504)
Q Consensus 167 ~~rlRliNa~~~~~~~~~i~gh-~~~via~DG~~~~p------~~~d~v~l~~geR~dv~v~~~ 223 (504)
.++|.+-|.|.... .|.|. .+..+..||..+.. .....+.|.||++..+.|...
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 45899999998654 55555 35555778874421 134578999999999998875
Done!